Citrus Sinensis ID: 006368
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZTS1 | 801 | Probable methionine--tRNA | yes | no | 0.924 | 0.747 | 0.795 | 0.0 | |
| Q9SVN5 | 797 | Probable methionine--tRNA | yes | no | 0.938 | 0.762 | 0.787 | 0.0 | |
| Q54X95 | 736 | Probable methionine--tRNA | yes | no | 0.871 | 0.767 | 0.559 | 0.0 | |
| Q68FL6 | 902 | Methionine--tRNA ligase, | yes | no | 0.891 | 0.640 | 0.537 | 0.0 | |
| Q2T9L8 | 898 | Methionine--tRNA ligase, | yes | no | 0.862 | 0.622 | 0.528 | 0.0 | |
| P56192 | 900 | Methionine--tRNA ligase, | yes | no | 0.868 | 0.625 | 0.534 | 0.0 | |
| Q6PF21 | 905 | Methionine--tRNA ligase, | N/A | no | 0.949 | 0.679 | 0.499 | 0.0 | |
| Q9UUF2 | 782 | Probable methionine--tRNA | yes | no | 0.867 | 0.718 | 0.534 | 0.0 | |
| Q20970 | 917 | Methionine--tRNA ligase, | yes | no | 0.887 | 0.627 | 0.495 | 1e-176 | |
| P00958 | 751 | Methionine--tRNA ligase, | yes | no | 0.865 | 0.747 | 0.499 | 1e-174 |
| >sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/601 (79%), Positives = 539/601 (89%), Gaps = 2/601 (0%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RNIL+TSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYN IYICGTDEYGTATETK
Sbjct: 14 GRRNILVTSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVIYICGTDEYGTATETK 73
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ CSPKEICDKYH +H +VYKWFDI FD FGRTS+PQQTE CQAIF+KL++NNWL E
Sbjct: 74 AMEEKCSPKEICDKYHAVHSEVYKWFDIKFDKFGRTSSPQQTEVCQAIFQKLMENNWLTE 133
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
NTMQQ YCDTC+RFLADRLVEG CP EGCNYE+ARGDQCENC KLLN T+L DPKCKVC+
Sbjct: 134 NTMQQLYCDTCQRFLADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDPKCKVCK 193
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
N P++RDT+HLFL+LP L +KL YIN SVAG WSQNAIQAT+AWLKEGLK RCITRDL
Sbjct: 194 NTPRVRDTDHLFLELPLLSDKLVNYINETSVAGMWSQNAIQATNAWLKEGLKPRCITRDL 253
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWGVPVP E++K+KVFYVWFDAPIGYVSIT+ YT +WE+WWK+P+NVEL+QFMGKDNVPF
Sbjct: 254 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITASYTPDWEKWWKDPDNVELFQFMGKDNVPF 313
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
HTVMFPSTLLGTGE WT+MKTISVTEYLNYE+GKFSKS GIGVFGNDAKDTNIP EVWRY
Sbjct: 314 HTVMFPSTLLGTGEKWTMMKTISVTEYLNYEAGKFSKSHGIGVFGNDAKDTNIPPEVWRY 373
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSF+AKP G GY SIVPDA A
Sbjct: 374 YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAGAGYDSIVPDAPNA 433
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
ESH LTK L EK K+VEQYLEAMEKVKLKQGLK+AM ISS+GNAYLQESQFWKLYKED
Sbjct: 434 ESHPLTKALVEKTNKWVEQYLEAMEKVKLKQGLKSAMGISSDGNAYLQESQFWKLYKEDP 493
Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
+C++VM+TSVG+V+LLACLLEPFMPSFS EV QLN+ PE+ +S CD+KG++ +A+RPW
Sbjct: 494 AACAVVMKTSVGVVYLLACLLEPFMPSFSNEVLLQLNMTPEESLSFCDDKGEIAKAKRPW 553
Query: 560 EIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE--AEAAKTAEQLKKTKI 617
+ + AGHKIG P+PLFKELKD+EVE FR+KFAGSQA+R +A+ AEA K A++LK TK+
Sbjct: 554 DFVSAGHKIGKPSPLFKELKDEEVESFRNKFAGSQAERSSKAQADAEAKKVADKLKGTKL 613
Query: 618 S 618
S
Sbjct: 614 S 614
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0 |
| >sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1027 bits (2656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/612 (78%), Positives = 540/612 (88%), Gaps = 4/612 (0%)
Query: 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYI 66
E+ PKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRLRGYNAIYI
Sbjct: 2 EDDGKSSPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYI 61
Query: 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126
CGTDEYGTATETKA+E+NC+PKEICDKYH IHK+VY WF ISFD FGRTSTP+QTE CQA
Sbjct: 62 CGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEVCQA 121
Query: 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLN 186
IF KL DN WL ENTMQQ YCDTCK+FLADRLVEG+CPFEGCNY+SARGDQCE CGKLLN
Sbjct: 122 IFNKLWDNKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLN 181
Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWL 246
T+LKDPKCKVC+N P+IRDT+HLF++LP L+++LE YI SV GSWSQNAIQ T+AWL
Sbjct: 182 PTELKDPKCKVCQNTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTNAWL 241
Query: 247 KEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENV 306
++GL+ RCITRDLKWGVPVP E++K+KVFYVWFDAPIGYVSITSCYT+EWE+WWKNPENV
Sbjct: 242 RDGLRQRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTSEWEKWWKNPENV 301
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
ELYQFMGKDNVPFHTVMFPST LGT ENWTLMKTISVTEYLNYE GKFSKSKG+GVFGND
Sbjct: 302 ELYQFMGKDNVPFHTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGND 361
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
KDTNIPVEVWRYYLLTNRPEVSDT F+W DLQAK N ELL+NLGNF+NRVLSFIAKP
Sbjct: 362 VKDTNIPVEVWRYYLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDN 421
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
GYGS++PDA+ AESH LTK+LAEKV K+V +Y+EAMEKVKLKQGLKTAM ISSEGN YL
Sbjct: 422 AGYGSVIPDAHDAESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYL 481
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
Q SQFWKLYKED+P C++V+RT+ GLVHLLA LLEPFMPSFS EV KQLNL P+ SL
Sbjct: 482 QASQFWKLYKEDKPLCAVVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--FSLS 539
Query: 547 DEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAA 606
DE+G+V A RPW+I+P H+IG+P PLFKEL++DEV +R KFAGSQ+DR RA EAA
Sbjct: 540 DERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDR--RARDEAA 597
Query: 607 KTAEQLKKTKIS 618
A+QL KTK+S
Sbjct: 598 NLADQLNKTKLS 609
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Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q54X95|SYMC_DICDI Probable methionine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=metS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/586 (55%), Positives = 435/586 (74%), Gaps = 21/586 (3%)
Query: 9 PAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68
P+ PP LP G+RNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRL+ YN IYICG
Sbjct: 4 PSNTPP-LPKDGERNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLKNYNCIYICG 62
Query: 69 TDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128
TDEYGTATETKA+ + C+PKEICDKYH IHK++Y+WF+ISFD FGRTST QTE Q IF
Sbjct: 63 TDEYGTATETKALSEGCTPKEICDKYHEIHKEIYEWFNISFDKFGRTSTNSQTEIAQDIF 122
Query: 129 KKLLDNNWLIENTMQQPYCD-TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNA 187
K+ DN + + ++Q YC+ TCK FLADR VEGTCP C +E ARGDQC+ C KLLN
Sbjct: 123 NKIKDNGYTLTQEIEQLYCEQTCKMFLADRFVEGTCPH--CKFEDARGDQCDGCSKLLNP 180
Query: 188 TDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK 247
T+L +P+CKVC P I+ T H+F+DLP L+ ++++++ S G+WS+N+I T+ W+K
Sbjct: 181 TELINPRCKVCSKPPVIKSTKHIFIDLPQLQQQVDQFVETNSKGGNWSENSIAITNTWVK 240
Query: 248 EGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVE 307
LK RCITRDLKWG PVP+E FK+KVFYVWFDAPIGY+SIT+ YTNEWE+WWKNPENV+
Sbjct: 241 GELKPRCITRDLKWGTPVPMEEFKDKVFYVWFDAPIGYISITAEYTNEWEKWWKNPENVK 300
Query: 308 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDA 367
L QFMGKDNVPFHTV+FP++L+G+ +N+TL+ +S TE+LNYE+GKFSKS+ GVFG+ A
Sbjct: 301 LVQFMGKDNVPFHTVIFPASLIGSKDNYTLLNNLSTTEFLNYETGKFSKSRNTGVFGDGA 360
Query: 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
K T IP EVWR+YLL NRPE SD++F+W D K NNELLNN GN +NRVL +
Sbjct: 361 KATGIPSEVWRFYLLNNRPESSDSIFSWDDFNFK-NNELLNNFGNLVNRVLKMLNT--NA 417
Query: 428 GYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487
+ +VP E +++ K L ++V +++ QY + +E++ LK+GLK AMSIS GN Y+Q
Sbjct: 418 AFNGVVPKI--GELNEVDKKLVQEVDEHLVQYFQKLEEISLKEGLKIAMSISKLGNTYMQ 475
Query: 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
+++ W L +D C V+ + L+ LL+ LLEP++PS + +V++QLN++P K+ + D
Sbjct: 476 DNKPWDLSGKDNERCGQVLAILINLIKLLSTLLEPYIPSLTDKVHQQLNVEPTKYSTHFD 535
Query: 548 EKGDVDRARRPWEIIPAGHKIGSPN-PLFKELKDDEVEFFRSKFAG 592
IPAGH+I PL K+++ D+++ +R+KF+G
Sbjct: 536 INA-----------IPAGHEISKEILPLVKKIEADDLKKWRTKFSG 570
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Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q68FL6|SYMC_MOUSE Methionine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Mars PE=2 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/599 (53%), Positives = 424/599 (70%), Gaps = 21/599 (3%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
P LP+PG+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+CRLR +N +Y+CGTDEYG
Sbjct: 258 PVLPVPGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRQWNTLYLCGTDEYG 317
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+ +P+EICDKYH IH D+Y+WF ISFD FGRT+TPQQT+ Q IF++LL
Sbjct: 318 TATETKAMEEGLTPREICDKYHAIHADIYRWFGISFDTFGRTTTPQQTKITQDIFQRLLT 377
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
+++ +T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P
Sbjct: 378 RGFVLRDTVEQLRCERCARFLADRFVEGVCPF--CGYEEARGDQCDRCGKLINAIELKKP 435
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CK+CR+ P +R + HLFLDLP L +LE+++ W+ NA +WL++GLK R
Sbjct: 436 QCKICRSCPVVRSSQHLFLDLPKLEKRLEDWLGKTVPGSDWTPNARFIIRSWLRDGLKPR 495
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWG PVPLE F++KVFYVWFDA IGYVSIT+ YT++WE+WWKNPE V+LYQFM
Sbjct: 496 CITRDLKWGTPVPLEGFEDKVFYVWFDATIGYVSITANYTDQWEKWWKNPEQVDLYQFMA 555
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFH ++FP ++LG +N+TL+K I TEYLNYE GKFSKS+GIGVFG+ AKDT IP
Sbjct: 556 KDNVPFHGLVFPCSVLGAEDNYTLVKHIIATEYLNYEDGKFSKSRGIGVFGDMAKDTGIP 615
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
++WR+YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G V
Sbjct: 616 ADIWRFYLLYIRPEGQDSAFSWTDLLIKNNSELLNNLGNFINRAGMFVSK----FFGGCV 671
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
P+ + L V ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK
Sbjct: 672 PEMALTPDD---RRLVAHVSWELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWK 728
Query: 494 LYK---EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKG 550
K D+ V +V + LL+ +L+P+MP+ S + QL L P L
Sbjct: 729 RIKGGEMDRQRAGTVTGMAVNMAALLSVMLQPYMPTVSSTIQTQLQLPPAACRIL----- 783
Query: 551 DVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTA 609
A +PAGH+IG+ +PLF++L++D++E R +F G QA + A A TA
Sbjct: 784 ----ATSFICTLPAGHRIGTVSPLFQKLENDQIENLRQRFGGGQAKGSPKPAAVEAVTA 838
|
Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q2T9L8|SYMC_BOVIN Methionine--tRNA ligase, cytoplasmic OS=Bos taurus GN=MARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/590 (52%), Positives = 420/590 (71%), Gaps = 31/590 (5%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
P LP+ G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYG
Sbjct: 256 PVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYG 315
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+ +P+EICDKYHVIH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL
Sbjct: 316 TATETKAMEEGLTPQEICDKYHVIHADIYRWFNISFDFFGRTTTPQQTKITQDIFQRLLA 375
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
+++++T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P
Sbjct: 376 RGFVLQDTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKP 433
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CKVCR+ P ++ + HLFLDLP L ++EE++ W+ NA +WL++GLK R
Sbjct: 434 QCKVCRSCPVVKSSQHLFLDLPKLAARVEEWLEKTLPGSDWTANARFIIRSWLRDGLKPR 493
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V LYQFM
Sbjct: 494 CITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWEKWWKNPEQVNLYQFMA 553
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFH ++FPS+ LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP
Sbjct: 554 KDNVPFHGIVFPSSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIP 613
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
++WR+YLL NRPE D+ F+W D+ K+N+ELLNNLGNFINR F++K +G V
Sbjct: 614 ADIWRFYLLYNRPEGQDSAFSWTDMLFKNNSELLNNLGNFINRAGMFVSK----FFGGFV 669
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
P+ Q L + ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK
Sbjct: 670 PEMVLTSDDQ---RLLTHITLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWK 726
Query: 494 LYK---EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEK-----HISL 545
K D+ V +V + LL+ +L+P+MP+ S + QL L P L
Sbjct: 727 RIKGGEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILPTNFL 786
Query: 546 CDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
C +PAGH+IG+ +PLF++L++D++E + +F+G QA
Sbjct: 787 C--------------TLPAGHQIGTVSPLFQKLENDQIESLKQRFSGGQA 822
|
Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|P56192|SYMC_HUMAN Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/586 (53%), Positives = 421/586 (71%), Gaps = 23/586 (3%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
P LP+ G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYG
Sbjct: 256 PVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYG 315
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKA+E+ +P+EICDKYH+IH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL
Sbjct: 316 TATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLK 375
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
+++++T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P
Sbjct: 376 RGFVLQDTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAVELKKP 433
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CKVCR+ P ++ + HLFLDLP L +LEE++ W+ NA T +WL++GLK R
Sbjct: 434 QCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPR 493
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V+LYQFM
Sbjct: 494 CITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMA 553
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFH+++FP + LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP
Sbjct: 554 KDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIP 613
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
++WR+YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G V
Sbjct: 614 ADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSK----FFGGYV 669
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
P+ Q L V ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK
Sbjct: 670 PEMVLTPDDQ---RLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWK 726
Query: 494 LYK---EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEK-HISLCDEK 549
K D+ V +V + LL+ +L+P+MP+ S + QL L P I L +
Sbjct: 727 RIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFL 786
Query: 550 GDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 787 C----------TLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQA 822
|
Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q6PF21|SYMC_XENLA Methionine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=mars PE=2 SV=1 | Back alignment and function description |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/641 (49%), Positives = 441/641 (68%), Gaps = 26/641 (4%)
Query: 2 GSTGEENPAA-PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRG 60
G TG P P P LP+ G++N+LITSALPYVNNVPHLGNIIGSVLSADVFAR+CRLR
Sbjct: 241 GLTGASKPKQRPHPILPVEGEKNVLITSALPYVNNVPHLGNIIGSVLSADVFARYCRLRN 300
Query: 61 YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120
+N +YICGTDEYGTATETKAME+ +P++ICDKY+ IH +Y+WF+ISFD FGRT+T Q
Sbjct: 301 WNTLYICGTDEYGTATETKAMEEGLTPQQICDKYNAIHTAIYQWFNISFDYFGRTTTQHQ 360
Query: 121 TEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180
T Q IF +LL+ +L+ +T++Q C+ C+RFLADR VEG CPF CNYE ARGDQC+
Sbjct: 361 TTISQDIFHRLLEREFLLTDTVEQLRCEKCQRFLADRFVEGICPF--CNYEEARGDQCDK 418
Query: 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ 240
CGKL+NA +LK P+CK+C+ +P I+ + HLFLDLP L +LE+++ G W+ NA
Sbjct: 419 CGKLINAVELKKPQCKICKQSPVIKSSKHLFLDLPKLEKRLEQWLEQSFSTGDWTSNARF 478
Query: 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWW 300
T +W+++GLK RCITRDLKWG PVPL+ F++KVFYVWFDAPIGY+SIT+ YT++WE+WW
Sbjct: 479 ITRSWIRDGLKPRCITRDLKWGTPVPLDGFRDKVFYVWFDAPIGYISITANYTDQWEKWW 538
Query: 301 KNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGI 360
K+P+ V+LY FM KDNVPFH+V+FPS LLG +N+TL+ + TEYLNYE GKFSKS+G+
Sbjct: 539 KSPQQVQLYNFMAKDNVPFHSVVFPSCLLGAEDNYTLVNHLVATEYLNYEDGKFSKSRGV 598
Query: 361 GVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSF 420
GVFG+ AKDT IP ++WR+YLL RPE D+ F+W+DL K+N+ELLNNLGNF+NR F
Sbjct: 599 GVFGDMAKDTGIPADIWRFYLLYVRPEGQDSAFSWSDLMLKNNSELLNNLGNFVNRAGMF 658
Query: 421 IAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS 480
+ K + VP+ E K L +V ++QY +EKV+++ L+ ++IS
Sbjct: 659 VQK----FFNGCVPE---MELLSEDKRLLAQVAAELQQYNLLLEKVRIRDALRCILNISR 711
Query: 481 EGNAYLQESQFWKLYK---EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537
GN Y+Q ++ WK K ++Q V +V + LL+ +L P+MP+ S + +QL +
Sbjct: 712 HGNQYIQVNEPWKCIKGNQQEQKRAGTVTGVAVNMAALLSIMLHPYMPTISSVIQEQLLM 771
Query: 538 QPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADR 597
E + D + +GH+IG+ +PLF++L++D++E R +F G Q
Sbjct: 772 PQESKVLTTDFCC----------CLQSGHQIGNVSPLFQKLENDQIESLRKRFGGGQVK- 820
Query: 598 IIRAEAEAAKTAEQLKKTKISGENGLCSLQSETSSNEGNQI 638
++ ++ A + + K SG + L E +GN +
Sbjct: 821 -TESKVSPSQEAPEQQAPKASGPERVKELMQEL-EKQGNHV 859
|
Xenopus laevis (taxid: 8355) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q9UUF2|SYMC_SCHPO Probable methionine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rar1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/586 (53%), Positives = 406/586 (69%), Gaps = 24/586 (4%)
Query: 16 LPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA 75
LP +RNILITSALPYVNNVPHLGNI+GS LSADVFAR+ R R +N +YICGTDEYGTA
Sbjct: 216 LPKSNERNILITSALPYVNNVPHLGNIVGSTLSADVFARYHRARNHNTLYICGTDEYGTA 275
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN 135
TETKA+E+ SPKE+CDKYH +HK+VY WF+I FD+FGRT+TP+QT Q IF KL +N+
Sbjct: 276 TETKALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGIAQHIFTKLYNND 335
Query: 136 WLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195
++ +TM Q YC+ + +LADR VEGTCP C Y+ ARGDQC+ CG LLNA +L DPKC
Sbjct: 336 YMAIDTMTQLYCEVHQGYLADRYVEGTCP--KCGYDDARGDQCDGCGGLLNAFELIDPKC 393
Query: 196 KVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCI 255
K+ R P R+T H+FL L L+ +E + +V G WS N T +WLKEGL+ RCI
Sbjct: 394 KLDRATPVKRETKHVFLSLDKLQPAVESWAMQSAVEGKWSNNGRSITESWLKEGLRPRCI 453
Query: 256 TRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315
TRDLKWG PVPLE FK KV YVWFDA IGY+SIT+ YT+EWE+WW+NPE V+LYQFMGKD
Sbjct: 454 TRDLKWGTPVPLEEFKGKVLYVWFDATIGYISITANYTDEWEKWWRNPEQVKLYQFMGKD 513
Query: 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVE 375
NVPFHTV+FPS+LLGTGE WT++ I+ T+YLNYE+GKFSKS+G+GVFGN A+D +
Sbjct: 514 NVPFHTVIFPSSLLGTGEKWTMLHHINTTDYLNYETGKFSKSRGVGVFGNTAQDIGLSPS 573
Query: 376 VWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPD 435
VWRYYLL++RPE SDT+FTW + + N+ELL NLGNF+NR L F Y +VP
Sbjct: 574 VWRYYLLSSRPETSDTMFTWKEFITRHNSELLANLGNFVNRTLKFTTAK----YNGLVPH 629
Query: 436 A---NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF- 491
+ +L + V + +Y A+E KL++GL+ AM IS+ GN YLQ+++
Sbjct: 630 YLTDPSVGAGKLKADFVKDVNALLAKYNAALEASKLREGLRLAMEISARGNQYLQDNRID 689
Query: 492 WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGD 551
K Y ++ C+ + ++ L++LLA + P+MPS S + KQLN P I
Sbjct: 690 NKCYLYERQKCADAIGYALNLIYLLAAIFYPYMPSTSTSIYKQLN-APAAAIP------- 741
Query: 552 VDRARRPWEI-IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQAD 596
WE+ + GH+IG P LF + + E +RSK+ G+ ++
Sbjct: 742 -----DTWELCLLPGHRIGEPEYLFTRIDESMEEEWRSKYGGNGSN 782
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/616 (49%), Positives = 405/616 (65%), Gaps = 41/616 (6%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P LP PGKRNILIT+ALPYVNNVPHLGNIIG VLSADVFAR+C LRG+ Y+ GTDE
Sbjct: 25 PKSILPQPGKRNILITAALPYVNNVPHLGNIIGCVLSADVFARYCNLRGHQTFYVGGTDE 84
Query: 72 YGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKL 131
YGTATETKA+++ C+P+E+CDKYH IHK +Y+WF I F +FGRT+T QTE CQ +F KL
Sbjct: 85 YGTATETKALQEGCTPRELCDKYHAIHKGIYEWFGIDFSHFGRTTTDHQTEICQDMFLKL 144
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLK 191
N + ++ Q YC+ C++FLADR V GTCP C Y+ ARGDQC+ CGKL+NA DLK
Sbjct: 145 HKNGYTSSQSVDQLYCNQCEKFLADRFVTGTCPM--CAYDDARGDQCDGCGKLINAVDLK 202
Query: 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVA--GSWSQNAIQATHAWLKEG 249
D KC +C+ P+++ + H+FL L L+ K E+++ WS NA+ T AW+K G
Sbjct: 203 DAKCHMCKATPEVKQSTHIFLSLDKLQQKTTEHLDRELAKEDNRWSSNAVGITKAWMKLG 262
Query: 250 LKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE-WEQWWKNPENVEL 308
L RCITRDLKWG VPL+ F++KVFYVWFDAPIGY+SIT C + W +WWKNPENVEL
Sbjct: 263 LDPRCITRDLKWGTAVPLDGFEKKVFYVWFDAPIGYLSITKCVLGDNWTKWWKNPENVEL 322
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAK 368
+ F+GKDNV FH VMFP + LG +N+T++ + TEYLNYE KFSKS+G G+FG+ A+
Sbjct: 323 FNFVGKDNVAFHAVMFPCSQLGANDNYTVVNNLCATEYLNYEDTKFSKSRGTGIFGDAAQ 382
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
T IP ++WR+YLL RPE DT F+W D K N+ELLNNLGNFINR LSF+A
Sbjct: 383 GTEIPADIWRFYLLYMRPESQDTAFSWDDFVLKVNSELLNNLGNFINRALSFVA----NS 438
Query: 429 YGSIVPDANGAESHQLTKTLAE---KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485
+G +VP+ N LT AE ++ Q+ + + V LK +KT +++S GN Y
Sbjct: 439 FGGVVPEMN------LTNDDAEVLSEIHNECMQWDKQFDGVHLKDAVKTILNVSRLGNQY 492
Query: 486 LQESQFWKLYKEDQPS---CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
+Q W L K+D+ ++ + + + ++ LL P MP+ S + +Q L
Sbjct: 493 MQAQTPWVLMKKDEEGKKRAGTIIGVAANIAYHVSVLLYPIMPTISATIREQCGLPALPL 552
Query: 543 ISLCDEKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIR 600
+ P+ I + AGHKIG P+PLF++L ++ F++KF GSQ
Sbjct: 553 FT-------------PFPICYLKAGHKIGQPSPLFQKLDPAQIAEFKAKFGGSQ-----D 594
Query: 601 AEAEAAKTAEQLKKTK 616
A++ A KTAE+ K+ K
Sbjct: 595 AQSSAPKTAEKPKQQK 610
|
Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|P00958|SYMC_YEAST Methionine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MES1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/581 (49%), Positives = 402/581 (69%), Gaps = 20/581 (3%)
Query: 16 LPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA 75
LP P +RNILITSALPYVNNVPHLGNIIGSVLSAD+FAR+C+ R YNA++ICGTDEYGTA
Sbjct: 190 LPKPNERNILITSALPYVNNVPHLGNIIGSVLSADIFARYCKGRNYNALFICGTDEYGTA 249
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN 135
TETKA+E+ +P+++CDKYH IH DVYKWF I FD FGRT+T +QTE Q IF KL N
Sbjct: 250 TETKALEEGVTPRQLCDKYHKIHSDVYKWFQIGFDYFGRTTTDKQTEIAQHIFTKLNSNG 309
Query: 136 WLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195
+L E +M+Q YC +LADR VEG CP C+Y+ ARGDQC+ CG LL+ +L +P+C
Sbjct: 310 YLEEQSMKQLYCPVHNSYLADRYVEGECP--KCHYDDARGDQCDKCGALLDPFELINPRC 367
Query: 196 KVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCI 255
K+ +P+ + ++H+FL L L +++ E++ S G+WS+N+ T +WLK+GLK RCI
Sbjct: 368 KLDDASPEPKYSDHIFLSLDKLESQISEWVEKASEEGNWSKNSKTITQSWLKDGLKPRCI 427
Query: 256 TRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315
TRDL WG PVPLE++K+KV YVWFDA IGYVSITS YT EW+QWW NPE+V LYQFMGKD
Sbjct: 428 TRDLVWGTPVPLEKYKDKVLYVWFDATIGYVSITSNYTKEWKQWWNNPEHVSLYQFMGKD 487
Query: 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVE 375
NVPFHTV+FP + LGT ENWT++ ++ TEYL YE+GKFSKS+G+GVFGN+A+D+ I
Sbjct: 488 NVPFHTVVFPGSQLGTEENWTMLHHLNTTEYLQYENGKFSKSRGVGVFGNNAQDSGISPS 547
Query: 376 VWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPD 435
VWRYYL + RPE SD+ F+W D A++N+ELL NLGNF+NR++ F+ Y +VP
Sbjct: 548 VWRYYLASVRPESSDSHFSWDDFVARNNSELLANLGNFVNRLIKFV----NAKYNGVVPK 603
Query: 436 ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK-L 494
+ + L + + + + Y++ ME ++GL+ AMS+S+ GN +LQE++ L
Sbjct: 604 FDPKKVSNY-DGLVKDINEILSNYVKEMELGHERRGLEIAMSLSARGNQFLQENKLDNTL 662
Query: 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDR 554
+ + V+ + +++ ++ ++ P+MP ++NK LN K D++ +
Sbjct: 663 FSQSPEKSDAVVAVGLNIIYAVSSIITPYMPEIGEKINKMLNAPALK----IDDRFHL-- 716
Query: 555 ARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
I GH I LF+ + + +++ +R+K+ G Q
Sbjct: 717 ------AILEGHNINKAEYLFQRIDEKKIDEWRAKYGGQQV 751
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | ||||||
| 298205165 | 949 | unnamed protein product [Vitis vinifera] | 0.939 | 0.641 | 0.844 | 0.0 | |
| 225433588 | 807 | PREDICTED: probable methionyl-tRNA synth | 0.939 | 0.754 | 0.848 | 0.0 | |
| 224129132 | 801 | predicted protein [Populus trichocarpa] | 0.936 | 0.757 | 0.847 | 0.0 | |
| 225463876 | 804 | PREDICTED: probable methionyl-tRNA synth | 0.979 | 0.789 | 0.787 | 0.0 | |
| 449442335 | 804 | PREDICTED: probable methionine--tRNA lig | 0.955 | 0.769 | 0.815 | 0.0 | |
| 224055851 | 805 | predicted protein [Populus trichocarpa] | 0.933 | 0.751 | 0.833 | 0.0 | |
| 356543424 | 803 | PREDICTED: probable methionyl-tRNA synth | 0.939 | 0.758 | 0.795 | 0.0 | |
| 356544343 | 636 | PREDICTED: probable methionyl-tRNA synth | 0.935 | 0.952 | 0.791 | 0.0 | |
| 297800908 | 798 | hypothetical protein ARALYDRAFT_493536 [ | 0.927 | 0.753 | 0.806 | 0.0 | |
| 4091008 | 804 | methionyl-tRNA synthetase [Oryza sativa] | 0.924 | 0.745 | 0.797 | 0.0 |
| >gi|298205165|emb|CBI17224.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/612 (84%), Positives = 566/612 (92%), Gaps = 3/612 (0%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLPI GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 15 PKLPIQGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 74
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+ C+P++ICDKYH IHK+VYKWF+ISFD FGRTS+PQQTE CQAIFKKL++
Sbjct: 75 TATETKAMEEKCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQAIFKKLME 134
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
NNWL EN MQQ YCD C++FLADRLVEG CP + CNY+SARGDQCE CGKLLN +LKDP
Sbjct: 135 NNWLSENVMQQLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLLNPIELKDP 194
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CK C + P IRDTNHLFL+LP L++KLEEYIN MSVAGSWSQNAIQATHAWLKEGLK R
Sbjct: 195 RCKFCHSTPHIRDTNHLFLELPLLKDKLEEYINLMSVAGSWSQNAIQATHAWLKEGLKPR 254
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVP E+FK+KVFYVWFDAPIGYVSITSCYT +WE+WWKNPENVELYQFMG
Sbjct: 255 CITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMG 314
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPSTLLGT ENWTLMKTISVTEYLNYE+GKFSKSKG+GVFGNDAKDTNIP
Sbjct: 315 KDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIP 374
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
VEVWRYYLLTNRPEVSDTLFTW DLQAK N+ELLNNLGNFINRVLSFIAKP G GYGS++
Sbjct: 375 VEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPAGLGYGSVI 434
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
PDA GAE HQLTKTLAEKVG++VEQY+EAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK
Sbjct: 435 PDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 494
Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
LYKEDQPSCSIV++TS+GLVHLLACLLEPFMPSFS+EV KQLN+ PE LCDEKGD++
Sbjct: 495 LYKEDQPSCSIVVKTSLGLVHLLACLLEPFMPSFSLEVLKQLNMPPETSFLLCDEKGDIE 554
Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLK 613
RA+RPWEI+PAGH+IG+P PLFKELKD++VEFFR KFAGSQADRI++AEAEA K AEQLK
Sbjct: 555 RAKRPWEIVPAGHRIGTPEPLFKELKDEDVEFFREKFAGSQADRIVKAEAEAKKIAEQLK 614
Query: 614 KTKISGENGLCS 625
KTK+S LC+
Sbjct: 615 KTKVS---ALCT 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433588|ref|XP_002269672.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/609 (84%), Positives = 565/609 (92%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLPI GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 15 PKLPIQGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 74
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+ C+P++ICDKYH IHK+VYKWF+ISFD FGRTS+PQQTE CQAIFKKL++
Sbjct: 75 TATETKAMEEKCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQAIFKKLME 134
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
NNWL EN MQQ YCD C++FLADRLVEG CP + CNY+SARGDQCE CGKLLN +LKDP
Sbjct: 135 NNWLSENVMQQLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLLNPIELKDP 194
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CK C + P IRDTNHLFL+LP L++KLEEYIN MSVAGSWSQNAIQATHAWLKEGLK R
Sbjct: 195 RCKFCHSTPHIRDTNHLFLELPLLKDKLEEYINLMSVAGSWSQNAIQATHAWLKEGLKPR 254
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVP E+FK+KVFYVWFDAPIGYVSITSCYT +WE+WWKNPENVELYQFMG
Sbjct: 255 CITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMG 314
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPSTLLGT ENWTLMKTISVTEYLNYE+GKFSKSKG+GVFGNDAKDTNIP
Sbjct: 315 KDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIP 374
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
VEVWRYYLLTNRPEVSDTLFTW DLQAK N+ELLNNLGNFINRVLSFIAKP G GYGS++
Sbjct: 375 VEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPAGLGYGSVI 434
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
PDA GAE HQLTKTLAEKVG++VEQY+EAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK
Sbjct: 435 PDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 494
Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
LYKEDQPSCSIV++TS+GLVHLLACLLEPFMPSFS+EV KQLN+ PE LCDEKGD++
Sbjct: 495 LYKEDQPSCSIVVKTSLGLVHLLACLLEPFMPSFSLEVLKQLNMPPETSFLLCDEKGDIE 554
Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLK 613
RA+RPWEI+PAGH+IG+P PLFKELKD++VEFFR KFAGSQADRI++AEAEA K AEQLK
Sbjct: 555 RAKRPWEIVPAGHRIGTPEPLFKELKDEDVEFFREKFAGSQADRIVKAEAEAKKIAEQLK 614
Query: 614 KTKISGENG 622
KTK+S NG
Sbjct: 615 KTKVSDGNG 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129132|ref|XP_002328898.1| predicted protein [Populus trichocarpa] gi|222839328|gb|EEE77665.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/609 (84%), Positives = 566/609 (92%), Gaps = 2/609 (0%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P PKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDE
Sbjct: 7 PVPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDE 66
Query: 72 YGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKL 131
YGTATETKAME+N +PK+ICDKYH IH++VYKWF+ISFD FGRTS+PQQTE CQAIFKKL
Sbjct: 67 YGTATETKAMEENSTPKQICDKYHAIHREVYKWFNISFDEFGRTSSPQQTEVCQAIFKKL 126
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLK 191
LDNNWL ENTM+Q YCDTC+RFLADRLVEGTCP EGCNY+SARGDQCENCGKLLN T+L
Sbjct: 127 LDNNWLSENTMKQLYCDTCERFLADRLVEGTCPTEGCNYDSARGDQCENCGKLLNPTELI 186
Query: 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251
+P+CK C+N P+IRDTNHLFL+LP L++KL YI +MSVAGSWSQNAIQ T+AWLKEGLK
Sbjct: 187 NPRCKQCKNTPRIRDTNHLFLELPQLKDKLVSYIESMSVAGSWSQNAIQTTNAWLKEGLK 246
Query: 252 VRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQF 311
RCITRDLKWGVPVPL+ FK+KVFYVWFDAPIGYVSITSCYT +WE+WWKNP+NVELYQF
Sbjct: 247 PRCITRDLKWGVPVPLDEFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPDNVELYQF 306
Query: 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTN 371
MGKDNVPFHTVMFPSTL+GTGENWT+MKTISVTEYLNYE+GKFSKSKG+GVFGNDAKDTN
Sbjct: 307 MGKDNVPFHTVMFPSTLIGTGENWTMMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTN 366
Query: 372 IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGS 431
IPVEVWRYYLLTNRPEVSDTLFTW+DLQAK N+ELLNNLGNFINRVLSF+AKPPG GYGS
Sbjct: 367 IPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSELLNNLGNFINRVLSFLAKPPGLGYGS 426
Query: 432 IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
I+PDA GA+SH LTK LA +VGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF
Sbjct: 427 IIPDAPGADSHPLTKKLAGEVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 486
Query: 492 WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGD 551
WKLYKEDQPSCSIV++TS+GLV+LLACLLEPF+PSFSVEV KQLNL P + SLCDEKGD
Sbjct: 487 WKLYKEDQPSCSIVIKTSLGLVYLLACLLEPFIPSFSVEVFKQLNL-PLEQASLCDEKGD 545
Query: 552 VDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAE-AAKTAE 610
+DRA+RPWEI+PAGHKIG+P PLFKELKD+EVE +R +FAGSQADR+ R EAE AAK AE
Sbjct: 546 MDRAKRPWEILPAGHKIGTPEPLFKELKDEEVEDYRRRFAGSQADRLERDEAEKAAKLAE 605
Query: 611 QLKKTKISG 619
QLKK G
Sbjct: 606 QLKKKASVG 614
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463876|ref|XP_002268996.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] gi|296081059|emb|CBI18340.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/639 (78%), Positives = 568/639 (88%), Gaps = 4/639 (0%)
Query: 5 GEENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAI 64
G+EN K+P+ GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYN +
Sbjct: 2 GDENEKGGRKKVPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVL 61
Query: 65 YICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEAC 124
YICGTDEYGTATETKAME+NCSP++ICDKYH IHK+VY WF ISFD FGRTSTPQ TE C
Sbjct: 62 YICGTDEYGTATETKAMEENCSPQQICDKYHKIHKEVYDWFGISFDEFGRTSTPQHTEVC 121
Query: 125 QAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKL 184
QAIFKKL++NNWL EN MQQ YC+TC+RFLADRLVEGTCP CNY+SARGDQCE CGKL
Sbjct: 122 QAIFKKLMENNWLSENRMQQLYCETCQRFLADRLVEGTCPTLDCNYDSARGDQCEKCGKL 181
Query: 185 LNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA 244
LN T+LKDP+CKVC+++PQIRDT+HLFL+LP L++KLEEYINNMS+AG WSQNAIQAT+A
Sbjct: 182 LNPTELKDPRCKVCQSSPQIRDTDHLFLELPLLKDKLEEYINNMSIAGCWSQNAIQATYA 241
Query: 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPE 304
WLKEGL+ RCITRDLKWGVPVP E++K+KVFYVWFDAPIGYVSIT+CYT EWE+WWKNPE
Sbjct: 242 WLKEGLRSRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPE 301
Query: 305 NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
NV+LYQFMGKDNVPFHTVMFPSTL+GTGENWTLMK+ISVTEYLNYE+GKFSKSKG+GVFG
Sbjct: 302 NVDLYQFMGKDNVPFHTVMFPSTLIGTGENWTLMKSISVTEYLNYEAGKFSKSKGVGVFG 361
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
ND KDT IP EVWRYYLLTNRPEVSD+LFTW DLQAK N ELLNNLGNFINRVLSFIAK
Sbjct: 362 NDVKDTKIPAEVWRYYLLTNRPEVSDSLFTWVDLQAKLNTELLNNLGNFINRVLSFIAKA 421
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
PG GYGS +PDA GAESH LTK LAEKVG Y+EQY+EAMEKVKLKQGLK MSISSEGN
Sbjct: 422 PGLGYGSSIPDAPGAESHYLTKALAEKVGAYLEQYIEAMEKVKLKQGLKIGMSISSEGNG 481
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
YLQESQFWKLYKED+ SCSIVMRTSVGLV+LL+CLLEPFMPSFS+EV KQLNL PE +S
Sbjct: 482 YLQESQFWKLYKEDRASCSIVMRTSVGLVYLLSCLLEPFMPSFSLEVLKQLNLPPETRLS 541
Query: 545 LCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAE 604
LCDE GD++RAR+PWE++PAGHK+G+P PLF EL+D++VEFFR KFAGSQADR+++AEAE
Sbjct: 542 LCDENGDLERARKPWELLPAGHKMGTPEPLFNELRDEDVEFFREKFAGSQADRVVKAEAE 601
Query: 605 AAKTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGS 643
A K EQLK+ KIS NG + + S+ G+++ S
Sbjct: 602 AKKIVEQLKEAKISDGNG----KKQKSTKSGSEVQIKKS 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442335|ref|XP_004138937.1| PREDICTED: probable methionine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/619 (81%), Positives = 556/619 (89%)
Query: 1 MGSTGEENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRG 60
MG + A KLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRG
Sbjct: 1 MGDHSGKAAGANASKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRG 60
Query: 61 YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120
YNAIYICGTDEYGTATETKAME+ CSPKEICDKYH IHK+VY WF ISFD FGRTS+PQQ
Sbjct: 61 YNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQ 120
Query: 121 TEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180
TE CQAIF KLL+NNWL ENTMQQ YCDTC+RFLADRLVEG CP GC Y+SARGDQCE
Sbjct: 121 TEVCQAIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEK 180
Query: 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ 240
CGKLLN T+L+DP+CKVC+ P+IRDTNH+FL+LP LR KLEEYIN MSVAGSWSQNAIQ
Sbjct: 181 CGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQ 240
Query: 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWW 300
AT+AWLKEGLK RCITRDLKWGVPVPLERFK+KVFYVWFDAPIGYVSITSCYTNEWE+WW
Sbjct: 241 ATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWW 300
Query: 301 KNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGI 360
KNPENVEL+QFMGKDNVPFHTVMFPSTLLGTGE+WTLMKTISVTEYLNYE+GKFSKSKGI
Sbjct: 301 KNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGI 360
Query: 361 GVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSF 420
GVFGNDAKDTNIPVEVWRYYLL NRPEVSDTLFTWADLQAK N ELLNNLGNFI+RVLSF
Sbjct: 361 GVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSF 420
Query: 421 IAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS 480
IAKP GQGYGSI+PD SH+LT +LA+KVGKYV+QY+E+MEKVKLKQGLK AM+ISS
Sbjct: 421 IAKPLGQGYGSIIPDVPDVVSHELTLSLADKVGKYVDQYMESMEKVKLKQGLKAAMAISS 480
Query: 481 EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPE 540
EGN YLQ +QFW LYK D+PSC IVMRTS GLV+LLACLLEPF+PSFS+EV +QL+L E
Sbjct: 481 EGNIYLQTAQFWNLYKADKPSCDIVMRTSAGLVYLLACLLEPFIPSFSLEVFRQLDLPLE 540
Query: 541 KHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIR 600
+HISLC+EKGD++ ++PW+I+P+G KIG+P PLFKELKD+EVE +R KFAGSQA RI+R
Sbjct: 541 RHISLCEEKGDIETVKQPWKILPSGQKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVR 600
Query: 601 AEAEAAKTAEQLKKTKISG 619
AEAEA K A QLKKT +SG
Sbjct: 601 AEAEAEKLAAQLKKTNVSG 619
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055851|ref|XP_002298685.1| predicted protein [Populus trichocarpa] gi|222845943|gb|EEE83490.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/612 (83%), Positives = 560/612 (91%), Gaps = 7/612 (1%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 68
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+N +PK+ICDKY+ IH++VYKWF+ISFD FGRTS+PQQTE CQAIFKKLL+
Sbjct: 69 TATETKAMEENSTPKQICDKYYAIHREVYKWFNISFDEFGRTSSPQQTEICQAIFKKLLE 128
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
NNWL EN+MQQ YCDTC+RFLADRLVEG CP EGCNY+SARGDQCENCGKLLN T+L +P
Sbjct: 129 NNWLSENSMQQLYCDTCERFLADRLVEGNCPTEGCNYDSARGDQCENCGKLLNPTELINP 188
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CK C+N P+IRDTNHLFL+LP L++KL YI + SVAG WSQNAIQ T+AWLKEGLK R
Sbjct: 189 RCKQCKNTPRIRDTNHLFLELPLLKDKLVHYIESTSVAGGWSQNAIQTTNAWLKEGLKPR 248
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVPLE FK+KVFYVWFDAPIGYVSITSCYT +WE+WWKNPENVELYQFMG
Sbjct: 249 CITRDLKWGVPVPLEEFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPENVELYQFMG 308
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYE+GKFSKSKG+GVFGNDAKDTNIP
Sbjct: 309 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIP 368
Query: 374 VEVWRYYLLTNRPE-----VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
VEVWRYYLLTNRPE VSDTLFTW+DLQAKSNNELLNNLGNFINRVLSF+AKPPG G
Sbjct: 369 VEVWRYYLLTNRPEAILLKVSDTLFTWSDLQAKSNNELLNNLGNFINRVLSFLAKPPGSG 428
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
YGS++PDA GA SH LT LAE+VGKYVEQYLEAMEKVKLK GLKTAMSISSEGNAYLQE
Sbjct: 429 YGSVIPDAPGAGSHPLTNKLAEEVGKYVEQYLEAMEKVKLKHGLKTAMSISSEGNAYLQE 488
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
SQFW+LYKEDQPSCSIV++TS+GLV+LLACLLEPFMPSFSVEV KQLN+ PE+ SLCDE
Sbjct: 489 SQFWRLYKEDQPSCSIVIKTSLGLVYLLACLLEPFMPSFSVEVFKQLNMPPEQA-SLCDE 547
Query: 549 KGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAE-AAK 607
KGD+D+A+RPWEI+PAGHKIG+P PLFKELK +EVE +R KFAGSQADR+ R E E A+K
Sbjct: 548 KGDMDKAKRPWEILPAGHKIGTPEPLFKELKIEEVEDYRKKFAGSQADRLEREEVEKASK 607
Query: 608 TAEQLKKTKISG 619
AE+LKK G
Sbjct: 608 LAEELKKKATVG 619
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543424|ref|XP_003540160.1| PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/612 (79%), Positives = 551/612 (90%), Gaps = 3/612 (0%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLP+ GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 8 PKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 67
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+NCSPKEICDKYH IHK+VY WF+ISFD FGRTS+P+QTE CQAIF+K+ +
Sbjct: 68 TATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPEQTEVCQAIFRKIFE 127
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
N WL ENTMQQ YC+TC+RFLADRLVEGTCP GC Y+SARGDQCE CGKLLN T+LK+P
Sbjct: 128 NKWLSENTMQQLYCNTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNP 187
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+CKVC+ P IRDT+HLFL+LP L+++LE+YI+ MSV G WSQNAIQ T++WL+EGLK R
Sbjct: 188 RCKVCQKTPHIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPR 247
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVP E++ +KVFYVWFDAPIGYVSITSCYT+EWE+WWKNPENVELYQFMG
Sbjct: 248 CITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTHEWEKWWKNPENVELYQFMG 307
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPSTLLGT ENWTLMKTISVTEYLNYE+GKFSKSKGIGVFGNDAKDTNIP
Sbjct: 308 KDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIP 367
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI- 432
VEVWRYYLLTNRPEVSDTLFTW DLQAK N+ELLNNLGNFINRVLSFIAKP GQGY SI
Sbjct: 368 VEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSII 427
Query: 433 --VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490
VPD +SH TK LA+KV Y++QY+EAMEKVKLKQGLKTAMSISSEGNAYLQE++
Sbjct: 428 PSVPDNVSGDSHGPTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAE 487
Query: 491 FWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKG 550
FW+LYKE++ CS+VM+T+ G+V+LLACLLEPF+PSF++EV KQLNL + H+SL D+KG
Sbjct: 488 FWRLYKENKSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPADTHVSLSDDKG 547
Query: 551 DVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAE 610
DVDR +RPW+II AGHKIG+P PLF+EL ++EVEF+R KFAGSQADRI+RAEAEA AE
Sbjct: 548 DVDRVKRPWDIISAGHKIGTPKPLFRELVNEEVEFYRKKFAGSQADRIVRAEAEAQNVAE 607
Query: 611 QLKKTKISGENG 622
QLKKTK+S NG
Sbjct: 608 QLKKTKVSDGNG 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544343|ref|XP_003540612.1| PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/609 (79%), Positives = 549/609 (90%), Gaps = 3/609 (0%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLP+ GKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYICGTDEYG
Sbjct: 8 PKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYG 67
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKAME+NCSPKEICDKYH IHK+VY WF+ISFD FGRTS+P+QTE CQAIF+K+ +
Sbjct: 68 TATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPEQTEVCQAIFRKIFE 127
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
N WL ENTMQQ YC+TC+RFLADRLVEGTCP GC Y+SARGDQCE CGKLLN T+LK+P
Sbjct: 128 NKWLSENTMQQLYCNTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNP 187
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
CKVC+ P+IRDT+HLFL+LP L+++LE+YI+ MSV G WSQNAIQ T++WL+EGLK R
Sbjct: 188 GCKVCQKTPRIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPR 247
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVP E++ +KVFYVWFDAPIGYVSITSCYT +WE+WWKNPENVELYQFMG
Sbjct: 248 CITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMG 307
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPSTLLGT ENWTLMKTISVTEYLNYE+GKFSKSKGIGVFGNDAKDTNIP
Sbjct: 308 KDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIP 367
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI- 432
VEVWRYYLLTNRPEVSDTLFTW+DLQAK N+ELLNNLGNFINRVLSFIAKP GQGY SI
Sbjct: 368 VEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSII 427
Query: 433 --VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490
VPD +SH TK LA+KV Y++QY+EAMEKVKLKQGLK AMSISSEGNAYLQE++
Sbjct: 428 PSVPDDVSGDSHGPTKKLADKVAAYIDQYIEAMEKVKLKQGLKVAMSISSEGNAYLQEAE 487
Query: 491 FWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKG 550
FW+LYKE++ CS+VM+T+ G+V+LLACLLEPF+PSF++EV KQLNL + H+SLCD+KG
Sbjct: 488 FWRLYKENKSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPVDTHVSLCDDKG 547
Query: 551 DVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAE 610
D+DR +RPW+II A HKIG+P PLF+EL ++EV+F+R KFAGSQADRI+RAEAEA AE
Sbjct: 548 DIDRVKRPWDIISASHKIGTPKPLFRELVNEEVKFYRKKFAGSQADRIVRAEAEAQNVAE 607
Query: 611 QLKKTKISG 619
QLKKTK+SG
Sbjct: 608 QLKKTKVSG 616
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800908|ref|XP_002868338.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] gi|297314174|gb|EFH44597.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/605 (80%), Positives = 542/605 (89%), Gaps = 4/605 (0%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
PKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRLRGYNAIYICGTDEYG
Sbjct: 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYG 68
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133
TATETKA+E+NC+PKEICDKYH IHK+VY WFDISFD FGRTSTP+QTE CQAIFKKL D
Sbjct: 69 TATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPEQTEVCQAIFKKLWD 128
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
N WL ENTMQQ YCDTCK+FLADRLVEG+CPFEGCNY+SARGDQCE CGKLLN T+LKDP
Sbjct: 129 NKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDP 188
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
KCKVC+N P+IRDT+HLF++LP L+++LE+YIN SVAGSWSQNAIQ T+AWL++GL+ R
Sbjct: 189 KCKVCQNTPRIRDTDHLFIELPLLKDRLEKYINETSVAGSWSQNAIQTTNAWLRDGLRQR 248
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313
CITRDLKWGVPVP E++KEKVFYVWFDAPIGYVSITSCYT+EWE+WWKNPENVELYQFMG
Sbjct: 249 CITRDLKWGVPVPHEKYKEKVFYVWFDAPIGYVSITSCYTSEWEKWWKNPENVELYQFMG 308
Query: 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIP 373
KDNVPFHTVMFPST LGTGENWTLMKTISVTEYLNYE GKFSKSKG+GVFGND KDTNIP
Sbjct: 309 KDNVPFHTVMFPSTQLGTGENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGNDVKDTNIP 368
Query: 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
VEVWRYYLLTNRPEVSDT F+W DLQAK N ELLNNLGNF+NRVLSFIAKP GYGS++
Sbjct: 369 VEVWRYYLLTNRPEVSDTSFSWTDLQAKLNGELLNNLGNFVNRVLSFIAKPNNAGYGSVI 428
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
PDA+ AESH LTK+LAEKV K+V +Y+EAMEKVKLKQGLKTAM ISSEGN YLQ SQFWK
Sbjct: 429 PDAHDAESHPLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNFYLQTSQFWK 488
Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
LYKED+P C+IV+RT+ GLVHLLA LLEPFMPSFS EV KQLNL P+ SL DE+G+V
Sbjct: 489 LYKEDKPLCAIVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--FSLSDERGEVL 546
Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLK 613
A +PWEI+P H+IG+ PLFKEL++DEV +R KFAGSQADR RA EAA +QL
Sbjct: 547 LASKPWEILPPSHRIGTAQPLFKELENDEVTQYREKFAGSQADR--RARDEAANLTDQLN 604
Query: 614 KTKIS 618
KTK+S
Sbjct: 605 KTKLS 609
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4091008|gb|AAC99620.1| methionyl-tRNA synthetase [Oryza sativa] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/601 (79%), Positives = 540/601 (89%), Gaps = 2/601 (0%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RNIL+TSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYN IYICGTDEYGTATETK
Sbjct: 17 GRRNILVTSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVIYICGTDEYGTATETK 76
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ CSPKEICDKYH +H +VYKWFDI FD FGRTS+PQQTE CQAIF+KL++NNWL E
Sbjct: 77 AMEEKCSPKEICDKYHAVHSEVYKWFDIKFDKFGRTSSPQQTEVCQAIFQKLMENNWLTE 136
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
NTMQQ YCDTC+RFLADRLVEG CP EGCNYE+ARGDQCENC KLLN T+L DPKCKVC+
Sbjct: 137 NTMQQLYCDTCQRFLADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDPKCKVCK 196
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
N P++RDT+HLFL+LP L +KL YIN SVAG WSQNAIQAT+AWLKEGLK RCITRDL
Sbjct: 197 NTPRVRDTDHLFLELPLLSDKLVNYINETSVAGMWSQNAIQATNAWLKEGLKPRCITRDL 256
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWGVPVP E++K+KVFYVWFDAPIGYVSIT+ YT +WE+WWK+P+NVEL+QFMGKDNVPF
Sbjct: 257 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITASYTPDWEKWWKDPDNVELFQFMGKDNVPF 316
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
HTVMFPSTLLGTGE WT+MKTISVTEYLNYE+GKFSKS GIGVFGNDAKDTNIP EVWRY
Sbjct: 317 HTVMFPSTLLGTGEKWTMMKTISVTEYLNYEAGKFSKSHGIGVFGNDAKDTNIPPEVWRY 376
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSF+AKP G GY SIVPDA A
Sbjct: 377 YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAGAGYDSIVPDAPNA 436
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
ESH LTK LAEK K+VEQYLEAMEKVKLKQGLK+AM ISS+GNAYLQESQFWKLYKED
Sbjct: 437 ESHPLTKALAEKTNKWVEQYLEAMEKVKLKQGLKSAMGISSDGNAYLQESQFWKLYKEDP 496
Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
+C++VM+TSVG+V+LLACLLEPFMPSFS EV QLN+ PE+ +S CD+KG++ +A+RPW
Sbjct: 497 AACAVVMKTSVGVVYLLACLLEPFMPSFSNEVLLQLNMTPEESLSFCDDKGEIAKAKRPW 556
Query: 560 EIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE--AEAAKTAEQLKKTKI 617
+ + AGHKIG P+PLFKELKD+EVE FR+KFAGSQA+R +A+ AEA K A++LK TK+
Sbjct: 557 DFVSAGHKIGKPSPLFKELKDEEVESFRNKFAGSQAERSSKAQADAEAKKVADKLKGTKL 616
Query: 618 S 618
S
Sbjct: 617 S 617
|
Source: Oryza sativa Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 648 | ||||||
| TAIR|locus:2119515 | 797 | AT4G13780 [Arabidopsis thalian | 0.893 | 0.726 | 0.798 | 1.9e-266 | |
| DICTYBASE|DDB_G0279113 | 736 | metS "methionyl-tRNA synthetas | 0.856 | 0.754 | 0.561 | 6e-183 | |
| MGI|MGI:1345633 | 902 | Mars "methionine-tRNA syntheta | 0.859 | 0.617 | 0.544 | 2.9e-174 | |
| UNIPROTKB|P56192 | 900 | MARS "Methionine--tRNA ligase, | 0.861 | 0.62 | 0.535 | 1.8e-172 | |
| UNIPROTKB|Q2T9L8 | 898 | MARS "Methionine--tRNA ligase, | 0.861 | 0.621 | 0.531 | 3e-172 | |
| UNIPROTKB|A6NC17 | 635 | MARS "Methionine--tRNA ligase, | 0.865 | 0.883 | 0.530 | 3e-172 | |
| RGD|1305321 | 902 | Mars "methionyl-tRNA synthetas | 0.861 | 0.618 | 0.535 | 4.9e-172 | |
| UNIPROTKB|F1MDW1 | 898 | MARS "Methionine--tRNA ligase, | 0.861 | 0.621 | 0.530 | 2.7e-171 | |
| UNIPROTKB|E2QZ06 | 900 | MARS "Uncharacterized protein" | 0.861 | 0.62 | 0.530 | 1.2e-170 | |
| UNIPROTKB|F6XD28 | 898 | MARS "Uncharacterized protein" | 0.861 | 0.621 | 0.530 | 1.2e-170 |
| TAIR|locus:2119515 AT4G13780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2563 (907.3 bits), Expect = 1.9e-266, P = 1.9e-266
Identities = 464/581 (79%), Positives = 519/581 (89%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
GKRNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRLRGYNAIYICGTDEYGTATETK
Sbjct: 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYGTATETK 74
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+E+NC+PKEICDKYH IHK+VY WF ISFD FGRTSTP+QTE CQAIF KL DN WL E
Sbjct: 75 ALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEVCQAIFNKLWDNKWLSE 134
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
NTMQQ YCDTCK+FLADRLVEG+CPFEGCNY+SARGDQCE CGKLLN T+LKDPKCKVC+
Sbjct: 135 NTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDPKCKVCQ 194
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
N P+IRDT+HLF++LP L+++LE YI SV GSWSQNAIQ T+AWL++GL+ RCITRDL
Sbjct: 195 NTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTNAWLRDGLRQRCITRDL 254
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWGVPVP E++K+KVFYVWFDAPIGYVSITSCYT+EWE+WWKNPENVELYQFMGKDNVPF
Sbjct: 255 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTSEWEKWWKNPENVELYQFMGKDNVPF 314
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
HTVMFPST LGT ENWTLMKTISVTEYLNYE GKFSKSKG+GVFGND KDTNIPVEVWRY
Sbjct: 315 HTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGNDVKDTNIPVEVWRY 374
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLLTNRPEVSDT F+W DLQAK N ELL+NLGNF+NRVLSFIAKP GYGS++PDA+ A
Sbjct: 375 YLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDNAGYGSVIPDAHDA 434
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
ESH LTK+LAEKV K+V +Y+EAMEKVKLKQGLKTAM ISSEGN YLQ SQFWKLYKED+
Sbjct: 435 ESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYLQASQFWKLYKEDK 494
Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
P C++V+RT+ GLVHLLA LLEPFMPSFS EV KQLNL P+ SL DE+G+V A RPW
Sbjct: 495 PLCAVVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--FSLSDERGEVLLASRPW 552
Query: 560 EIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIR 600
+I+P H+IG+P PLFKEL++DEV +R KFAGSQ+DR R
Sbjct: 553 DILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDRRAR 593
|
|
| DICTYBASE|DDB_G0279113 metS "methionyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1775 (629.9 bits), Expect = 6.0e-183, P = 6.0e-183
Identities = 323/575 (56%), Positives = 429/575 (74%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RNILITSALPYVNNVPHLGNIIG VLSADV+AR+CRL+ YN IYICGTDEYGTATETK
Sbjct: 14 GERNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLKNYNCIYICGTDEYGTATETK 73
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ + C+PKEICDKYH IHK++Y+WF+ISFD FGRTST QTE Q IF K+ DN + +
Sbjct: 74 ALSEGCTPKEICDKYHEIHKEIYEWFNISFDKFGRTSTNSQTEIAQDIFNKIKDNGYTLT 133
Query: 140 NTMQQPYCD-TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
++Q YC+ TCK FLADR VEGTCP C +E ARGDQC+ C KLLN T+L +P+CKVC
Sbjct: 134 QEIEQLYCEQTCKMFLADRFVEGTCPH--CKFEDARGDQCDGCSKLLNPTELINPRCKVC 191
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258
P I+ T H+F+DLP L+ ++++++ S G+WS+N+I T+ W+K LK RCITRD
Sbjct: 192 SKPPVIKSTKHIFIDLPQLQQQVDQFVETNSKGGNWSENSIAITNTWVKGELKPRCITRD 251
Query: 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP 318
LKWG PVP+E FK+KVFYVWFDAPIGY+SIT+ YTNEWE+WWKNPENV+L QFMGKDNVP
Sbjct: 252 LKWGTPVPMEEFKDKVFYVWFDAPIGYISITAEYTNEWEKWWKNPENVKLVQFMGKDNVP 311
Query: 319 FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWR 378
FHTV+FP++L+G+ +N+TL+ +S TE+LNYE+GKFSKS+ GVFG+ AK T IP EVWR
Sbjct: 312 FHTVIFPASLIGSKDNYTLLNNLSTTEFLNYETGKFSKSRNTGVFGDGAKATGIPSEVWR 371
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANG 438
+YLL NRPE SD++F+W D K NNELLNN GN +NRVL + + +VP
Sbjct: 372 FYLLNNRPESSDSIFSWDDFNFK-NNELLNNFGNLVNRVLKMLNT--NAAFNGVVPKIG- 427
Query: 439 AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED 498
E +++ K L ++V +++ QY + +E++ LK+GLK AMSIS GN Y+Q+++ W L +D
Sbjct: 428 -ELNEVDKKLVQEVDEHLVQYFQKLEEISLKEGLKIAMSISKLGNTYMQDNKPWDLSGKD 486
Query: 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRP 558
C V+ + L+ LL+ LLEP++PS + +V++QLN++P K+ + D
Sbjct: 487 NERCGQVLAILINLIKLLSTLLEPYIPSLTDKVHQQLNVEPTKYSTHFDINA-------- 538
Query: 559 WEIIPAGHKIGSPN-PLFKELKDDEVEFFRSKFAG 592
IPAGH+I PL K+++ D+++ +R+KF+G
Sbjct: 539 ---IPAGHEISKEILPLVKKIEADDLKKWRTKFSG 570
|
|
| MGI|MGI:1345633 Mars "methionine-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1693 (601.0 bits), Expect = 2.9e-174, P = 2.9e-174
Identities = 316/580 (54%), Positives = 418/580 (72%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+CRLR +N +Y+CGTDEYGTATETK
Sbjct: 264 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRQWNTLYLCGTDEYGTATETK 323
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYH IH D+Y+WF ISFD FGRT+TPQQT+ Q IF++LL +++
Sbjct: 324 AMEEGLTPREICDKYHAIHADIYRWFGISFDTFGRTTTPQQTKITQDIFQRLLTRGFVLR 383
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CK+CR
Sbjct: 384 DTVEQLRCERCARFLADRFVEGVCPF--CGYEEARGDQCDRCGKLINAIELKKPQCKICR 441
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGS-WSQNAIQATHAWLKEGLKVRCITRD 258
+ P +R + HLFLDLP L +LE+++ +V GS W+ NA +WL++GLK RCITRD
Sbjct: 442 SCPVVRSSQHLFLDLPKLEKRLEDWLGK-TVPGSDWTPNARFIIRSWLRDGLKPRCITRD 500
Query: 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP 318
LKWG PVPLE F++KVFYVWFDA IGYVSIT+ YT++WE+WWKNPE V+LYQFM KDNVP
Sbjct: 501 LKWGTPVPLEGFEDKVFYVWFDATIGYVSITANYTDQWEKWWKNPEQVDLYQFMAKDNVP 560
Query: 319 FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWR 378
FH ++FP ++LG +N+TL+K I TEYLNYE GKFSKS+GIGVFG+ AKDT IP ++WR
Sbjct: 561 FHGLVFPCSVLGAEDNYTLVKHIIATEYLNYEDGKFSKSRGIGVFGDMAKDTGIPADIWR 620
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANG 438
+YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 621 FYLLYIRPEGQDSAFSWTDLLIKNNSELLNNLGNFINRAGMFVSK----FFGGCVPEMAL 676
Query: 439 AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKE- 497
+ L V ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 677 TPDD---RRLVAHVSWELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGG 733
Query: 498 --DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRA 555
D+ V +V + LL+ +L+P+MP+ S + QL L P + C
Sbjct: 734 EMDRQRAGTVTGMAVNMAALLSVMLQPYMPTVSSTIQTQLQLPP----AACRILATSFIC 789
Query: 556 RRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 790 T-----LPAGHRIGTVSPLFQKLENDQIENLRQRFGGGQA 824
|
|
| UNIPROTKB|P56192 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1676 (595.0 bits), Expect = 1.8e-172, P = 1.8e-172
Identities = 310/579 (53%), Positives = 417/579 (72%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 321
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+E+ +P+EICDKYH+IH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 322 ALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQ 381
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 382 DTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAVELKKPQCKVCR 439
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L +LEE++ W+ NA T +WL++GLK RCITRDL
Sbjct: 440 SCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDL 499
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V+LYQFM KDNVPF
Sbjct: 500 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPF 559
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H+++FP + LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 560 HSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 619
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 620 YLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSK----FFGGYVPEMVLT 675
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
Q + LA V ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 676 PDDQ--RLLAH-VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSE 732
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL L P L
Sbjct: 733 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCT---- 788
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 789 -----LPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQA 822
|
|
| UNIPROTKB|Q2T9L8 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 308/579 (53%), Positives = 416/579 (71%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 321
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYHVIH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 322 AMEEGLTPQEICDKYHVIHADIYRWFNISFDFFGRTTTPQQTKITQDIFQRLLARGFVLQ 381
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 382 DTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKPQCKVCR 439
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L ++EE++ W+ NA +WL++GLK RCITRDL
Sbjct: 440 SCPVVKSSQHLFLDLPKLAARVEEWLEKTLPGSDWTANARFIIRSWLRDGLKPRCITRDL 499
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V LYQFM KDNVPF
Sbjct: 500 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWEKWWKNPEQVNLYQFMAKDNVPF 559
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H ++FPS+ LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 560 HGIVFPSSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 619
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL NRPE D+ F+W D+ K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 620 YLLYNRPEGQDSAFSWTDMLFKNNSELLNNLGNFINRAGMFVSK----FFGGFVPEMVLT 675
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
Q L + ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 676 SDDQ---RLLTHITLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGGE 732
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL L P S+
Sbjct: 733 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPA-CSILPTNFLCT--- 788
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E + +F+G QA
Sbjct: 789 -----LPAGHQIGTVSPLFQKLENDQIESLKQRFSGGQA 822
|
|
| UNIPROTKB|A6NC17 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 309/582 (53%), Positives = 418/582 (71%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYGTATETK
Sbjct: 28 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 87
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+E+ +P+EICDKYH+IH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 88 ALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQ 147
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 148 DTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAVELKKPQCKVCR 205
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L +LEE++ W+ NA T +WL++GLK RCITRDL
Sbjct: 206 SCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDL 265
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V+LYQFM KDNVPF
Sbjct: 266 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPF 325
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H+++FP + LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 326 HSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 385
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 386 YLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSK----FFGGYVPEMVLT 441
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
Q + LA V ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 442 PDDQ--RLLAH-VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSE 498
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL L P L
Sbjct: 499 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCT---- 554
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRI 598
+PAGH+IG+ +PLF++L++D++E R +F G Q ++
Sbjct: 555 -----LPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQVRKL 591
|
|
| RGD|1305321 Mars "methionyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 310/579 (53%), Positives = 417/579 (72%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYGTATETK
Sbjct: 264 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 323
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYH IH D+Y+WF+ISFD FGRT+TP QT+ Q IF++LL ++++
Sbjct: 324 AMEEGLTPQEICDKYHAIHVDIYRWFNISFDTFGRTTTPLQTKITQDIFQRLLTRGFVLQ 383
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 384 DTVEQLRCEQCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKRPQCKVCR 441
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L +LE+++ W+ NA +WL++GLK RCITRDL
Sbjct: 442 SHPVVKSSKHLFLDLPKLEKRLEDWLGKTMPGSDWTPNARFIIRSWLRDGLKPRCITRDL 501
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V+LYQFM KDNVPF
Sbjct: 502 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPF 561
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H ++FP + LG +N+TL+K + TEYLNYE GKFSKS+GIGVFG+ A+DT IP ++WR+
Sbjct: 562 HGLVFPCSALGAEDNYTLVKNLIATEYLNYEDGKFSKSRGIGVFGDMAQDTGIPADIWRF 621
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W DL K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 622 YLLYIRPEGQDSAFSWTDLLIKNNSELLNNLGNFINRAGMFVSK----FFGGCVPEM--V 675
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
+H + L V +++Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K D+
Sbjct: 676 LTHD-DRRLVAHVSWELQRYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGDE 734
Query: 500 PS---CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
V +V + LL+ +L+P+MP+ S + QL L PE + A
Sbjct: 735 MDRQRAGTVTGMAVNIAALLSVMLQPYMPTVSSTIQTQLQL-PEAACRIL--------AT 785
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 786 SFICTLPAGHRIGTVSPLFQKLENDQIENLRQRFGGGQA 824
|
|
| UNIPROTKB|F1MDW1 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
Identities = 307/579 (53%), Positives = 415/579 (71%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N +Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 321
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYHVIH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 322 AMEEGLTPQEICDKYHVIHADIYRWFNISFDFFGRTTTPQQTKITQDIFQRLLARGFVLQ 381
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 382 DTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKPQCKVCR 439
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L ++EE++ W+ NA +WL++GLK RCITRDL
Sbjct: 440 SCPVVKSSQHLFLDLPKLAARVEEWLEKTLPGSDWTANARFIIRSWLRDGLKPRCITRDL 499
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V LYQFM KDNVPF
Sbjct: 500 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWEKWWKNPEQVNLYQFMAKDNVPF 559
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H ++FPS+ LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 560 HGIVFPSSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 619
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W D+ K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 620 YLLYIRPEGQDSAFSWTDMLFKNNSELLNNLGNFINRAGMFVSK----FFGGFVPEMVLT 675
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
Q L + ++ Y + +EKV+++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 676 SDDQ---RLLTHITLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGGE 732
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL L P S+
Sbjct: 733 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPA-CSILPTNFLCT--- 788
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E + +F+G QA
Sbjct: 789 -----LPAGHQIGTVSPLFQKLENDQIESLKQRFSGGQA 822
|
|
| UNIPROTKB|E2QZ06 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
Identities = 307/579 (53%), Positives = 413/579 (71%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N Y+CGTDEYGTATETK
Sbjct: 264 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTFYLCGTDEYGTATETK 323
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYH IH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 324 AMEEGLTPQEICDKYHAIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQRLLTRGFVLQ 383
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 384 DTVEQLRCERCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKPQCKVCR 441
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L +LEE++ W+ NA +WL++GLK RCITRDL
Sbjct: 442 SCPVVKSSQHLFLDLPKLEKRLEEWLGKTLPGSDWTPNARFIIRSWLRDGLKPRCITRDL 501
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V LYQFM KDNVPF
Sbjct: 502 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVNLYQFMAKDNVPF 561
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H ++FP + LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 562 HGLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 621
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W D+ K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 622 YLLYIRPEGQDSAFSWTDMLLKNNSELLNNLGNFINRAGMFVSK----FFGGYVPEMVLT 677
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
+ + LA V ++ Y + +EKV++++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 678 SDDR--RLLAH-VTLELQHYHQLLEKVRIREALRSILTISRHGNQYIQVNEPWKRIKGSE 734
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL + P L
Sbjct: 735 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQVPPPACSILLTNFLCT---- 790
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 791 -----LPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQA 824
|
|
| UNIPROTKB|F6XD28 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
Identities = 307/579 (53%), Positives = 413/579 (71%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G+RN+LITSALPYVNNVPHLGNIIG VLSADVFAR+ RLR +N Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTFYLCGTDEYGTATETK 321
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
AME+ +P+EICDKYH IH D+Y+WF+ISFD FGRT+TPQQT+ Q IF++LL ++++
Sbjct: 322 AMEEGLTPQEICDKYHAIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQRLLTRGFVLQ 381
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+T++Q C+ C RFLADR VEG CPF C YE ARGDQC+ CGKL+NA +LK P+CKVCR
Sbjct: 382 DTVEQLRCERCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKPQCKVCR 439
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ P ++ + HLFLDLP L +LEE++ W+ NA +WL++GLK RCITRDL
Sbjct: 440 SCPVVKSSQHLFLDLPKLEKRLEEWLGKTLPGSDWTPNARFIIRSWLRDGLKPRCITRDL 499
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
KWG PVPLE F++KVFYVWFDA IGY+SIT+ YT++WE+WWKNPE V LYQFM KDNVPF
Sbjct: 500 KWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVNLYQFMAKDNVPF 559
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
H ++FP + LG +N+TL+ + TEYLNYE GKFSKS+G+GVFG+ A+DT IP ++WR+
Sbjct: 560 HGLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRF 619
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RPE D+ F+W D+ K+N+ELLNNLGNFINR F++K +G VP+
Sbjct: 620 YLLYIRPEGQDSAFSWTDMLLKNNSELLNNLGNFINRAGMFVSK----FFGGYVPEMVLT 675
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK--- 496
+ + LA V ++ Y + +EKV++++ L++ ++IS GN Y+Q ++ WK K
Sbjct: 676 SDDR--RLLAH-VTLELQHYHQLLEKVRIREALRSILTISRHGNQYIQVNEPWKRIKGSE 732
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRAR 556
D+ V +V + LL+ +L+P+MP+ S + QL + P L
Sbjct: 733 ADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQVPPPACSILLTNFLCT---- 788
Query: 557 RPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQA 595
+PAGH+IG+ +PLF++L++D++E R +F G QA
Sbjct: 789 -----LPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQA 822
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0ANL8 | SYM_MARMM | 6, ., 1, ., 1, ., 1, 0 | 0.3804 | 0.8364 | 0.9475 | yes | no |
| Q166L9 | SYM_ROSDO | 6, ., 1, ., 1, ., 1, 0 | 0.3773 | 0.8456 | 0.9580 | yes | no |
| Q0C161 | SYM_HYPNA | 6, ., 1, ., 1, ., 1, 0 | 0.3925 | 0.8611 | 0.9637 | yes | no |
| A1RXT9 | SYM_THEPD | 6, ., 1, ., 1, ., 1, 0 | 0.3622 | 0.8472 | 0.9716 | yes | no |
| Q82F60 | SYM_STRAW | 6, ., 1, ., 1, ., 1, 0 | 0.3873 | 0.8503 | 0.9599 | yes | no |
| A8LIJ9 | SYM_DINSH | 6, ., 1, ., 1, ., 1, 0 | 0.3851 | 0.8472 | 0.9597 | yes | no |
| A8ABN0 | SYM_IGNH4 | 6, ., 1, ., 1, ., 1, 0 | 0.3975 | 0.8209 | 0.9483 | yes | no |
| Q68FL6 | SYMC_MOUSE | 6, ., 1, ., 1, ., 1, 0 | 0.5375 | 0.8919 | 0.6407 | yes | no |
| Q1GEI7 | SYM_RUEST | 6, ., 1, ., 1, ., 1, 0 | 0.3743 | 0.8487 | 0.9598 | yes | no |
| A8ZQ66 | SYM1_ACAM1 | 6, ., 1, ., 1, ., 1, 0 | 0.4069 | 0.8441 | 0.9802 | yes | no |
| Q9ZTS1 | SYM_ORYSJ | 6, ., 1, ., 1, ., 1, 0 | 0.7953 | 0.9243 | 0.7478 | yes | no |
| B8H5U4 | SYM_CAUCN | 6, ., 1, ., 1, ., 1, 0 | 0.3788 | 0.8503 | 0.9683 | yes | no |
| B9KKH3 | SYM_RHOSK | 6, ., 1, ., 1, ., 1, 0 | 0.3794 | 0.8395 | 0.9510 | yes | no |
| A4WV24 | SYM_RHOS5 | 6, ., 1, ., 1, ., 1, 0 | 0.3847 | 0.8441 | 0.9562 | yes | no |
| Q5LTL1 | SYM_RUEPO | 6, ., 1, ., 1, ., 1, 0 | 0.3817 | 0.8472 | 0.9597 | yes | no |
| Q28MK0 | SYM_JANSC | 6, ., 1, ., 1, ., 1, 0 | 0.3703 | 0.8364 | 0.9508 | yes | no |
| A2BLU2 | SYM_HYPBU | 6, ., 1, ., 1, ., 1, 0 | 0.3903 | 0.8209 | 0.9300 | yes | no |
| P56192 | SYMC_HUMAN | 6, ., 1, ., 1, ., 1, 0 | 0.5341 | 0.8688 | 0.6255 | yes | no |
| Q2T9L8 | SYMC_BOVIN | 6, ., 1, ., 1, ., 1, 0 | 0.5288 | 0.8626 | 0.6224 | yes | no |
| Q9YCY3 | SYM_AERPE | 6, ., 1, ., 1, ., 1, 0 | 0.3862 | 0.8302 | 0.9405 | yes | no |
| B0T3J0 | SYM_CAUSK | 6, ., 1, ., 1, ., 1, 0 | 0.3798 | 0.8518 | 0.9701 | yes | no |
| Q9SVN5 | SYM_ARATH | 6, ., 1, ., 1, ., 1, 0 | 0.7875 | 0.9382 | 0.7628 | yes | no |
| Q54X95 | SYMC_DICDI | 6, ., 1, ., 1, ., 1, 0 | 0.5597 | 0.8719 | 0.7676 | yes | no |
| A3PLG8 | SYM_RHOS1 | 6, ., 1, ., 1, ., 1, 0 | 0.3791 | 0.8441 | 0.9562 | yes | no |
| Q3J0T3 | SYM_RHOS4 | 6, ., 1, ., 1, ., 1, 0 | 0.3791 | 0.8441 | 0.9562 | yes | no |
| A3MVB7 | SYM_PYRCJ | 6, ., 1, ., 1, ., 1, 0 | 0.3939 | 0.8256 | 0.9385 | yes | no |
| Q8SQW5 | SYMC_ENCCU | 6, ., 1, ., 1, ., 1, 0 | 0.4338 | 0.8101 | 0.9545 | yes | no |
| Q9A884 | SYM_CAUCR | 6, ., 1, ., 1, ., 1, 0 | 0.3788 | 0.8503 | 0.9683 | yes | no |
| Q9UUF2 | SYMC_SCHPO | 6, ., 1, ., 1, ., 1, 0 | 0.5341 | 0.8672 | 0.7186 | yes | no |
| A0M5Z9 | SYM_GRAFK | 6, ., 1, ., 1, ., 1, 0 | 0.3622 | 0.8904 | 0.8350 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.10 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00038829001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (807 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00022341001 | SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (392 aa) | • | • | 0.951 | ||||||
 | GSVIVG00017439001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (767 aa) | • | • | 0.922 | ||||||
 | GSVIVG00003836001 | SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa) | • | • | 0.922 | ||||||
 | GSVIVG00001918001 | SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa) | • | • | • | • | 0.916 | ||||
 | GSVIVG00000520001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa) | • | • | 0.900 | ||||||
 | GSVIVG00035361001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1090 aa) | • | 0.899 | |||||||
 | GSVIVG00017573001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (592 aa) | • | • | 0.861 | ||||||
 | GSVIVG00030361001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (530 aa) | • | • | • | • | 0.796 | ||||
 | GSVIVG00016648001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa) | • | • | • | • | 0.789 | ||||
 | GSVIVG00022843001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa) | • | • | • | 0.786 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 648 | |||
| PLN02610 | 801 | PLN02610, PLN02610, probable methionyl-tRNA synthe | 0.0 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.0 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 0.0 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 0.0 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 0.0 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 0.0 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 1e-156 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 4e-93 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 6e-76 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 2e-40 | |
| cd07957 | 129 | cd07957, Anticodon_Ia_Met, Anticodon-binding domai | 3e-37 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 1e-19 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-15 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 3e-06 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 4e-06 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 7e-06 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 3e-05 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 4e-05 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 4e-05 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 1e-04 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 2e-04 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 6e-04 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 0.003 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 0.004 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 0.004 |
| >gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1304 bits (3377), Expect = 0.0
Identities = 517/617 (83%), Positives = 564/617 (91%), Gaps = 2/617 (0%)
Query: 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYI 66
E+ PPKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYI
Sbjct: 2 EDEGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYI 61
Query: 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126
CGTDEYGTATETKA+E+NC+PKEICDKYH IHK+VY WFDISFD FGRTSTPQQTE CQA
Sbjct: 62 CGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQA 121
Query: 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLN 186
IFKKL++NNWL ENTMQQ YCDTC++FLADRLVEGTCP EGCNY+SARGDQCE CGKLLN
Sbjct: 122 IFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLN 181
Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWL 246
T+L DPKCKVC+N P+IRDT+HLFL+LP L++KL EYIN SVAG WSQNAIQ T+AWL
Sbjct: 182 PTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWL 241
Query: 247 KEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENV 306
++GLK RCITRDLKWGVPVPLE++K+KVFYVWFDAPIGYVSIT+CYT EWE+WWKNPENV
Sbjct: 242 RDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENV 301
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
ELYQFMGKDNVPFHTVMFPSTLLGTGENWT+MKTISVTEYLNYE GKFSKSKG+GVFGND
Sbjct: 302 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGND 361
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSFIAKPPG
Sbjct: 362 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPG 421
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
GYGS++PDA GAESH LTK LAEKVGK VEQY+EAMEKVKLKQGLKTAMSISSEGNAYL
Sbjct: 422 AGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYL 481
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
QESQFWKLYKED+PSC+IV++TSVGLV+LLACLLEPFMPSFS EV KQLNL PE +SL
Sbjct: 482 QESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLS 540
Query: 547 DEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAA 606
DEKG+V RA+RPWE++PAGHKIG+P PLFKELKD+EVE +R KFAGSQADR RAEA A
Sbjct: 541 DEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAEA 600
Query: 607 -KTAEQLKKTKISGENG 622
K A+QLKK +S
Sbjct: 601 KKLAKQLKKKALSDGGK 617
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Length = 801 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 687 bits (1776), Expect = 0.0
Identities = 245/578 (42%), Positives = 343/578 (59%), Gaps = 31/578 (5%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
ILITSA PY N HLG++ GS L ADVFAR+ RL+G +++ G+DE+GT E A
Sbjct: 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA 61
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ DKYH HK+ +K IS+D F RT++P E Q F KL +N ++ +
Sbjct: 62 KKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T++Q YC + RFL DR VEGTCP+ C YE ARGDQC+NCG LL+ TDL +P+ K+ +
Sbjct: 122 TIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDNCGALLDPTDLINPRSKISGS 179
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P+ R+T H FLDLPA +L +I + +G W N + T WLKEGLK R ITRDL
Sbjct: 180 TPEFRETEHFFLDLPAFAERLRAWIES---SGDWPPNVLNFTLNWLKEGLKPRAITRDLD 236
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGK 314
WG+PVP F+ KVFYVWFDA IGY+S + + W+++W +PE + Y F+GK
Sbjct: 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPE-TKSYYFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
DN+PFH++++P+ LLG+GE L I +EYL E GKFSKS+G G++ +DA + P
Sbjct: 296 DNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPP 354
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ RYYL N PE SDT FTW + + N+EL + GN +NRVLSFI K G + P
Sbjct: 355 DYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK---YFGGIVPP 411
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
G E +L AE + K V E +E + K+ L+ M ++ E N YL E WKL
Sbjct: 412 GELGDEDREL-IAEAEALFKEVG---ELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467
Query: 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDR 554
K D+ + V+ T++ LV LLA LL PF+P + ++ + L +
Sbjct: 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-----------ENIEKL 516
Query: 555 ARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAG 592
+ + GH I P PLFK++ D+++E + G
Sbjct: 517 TWESLKPLLPGHPINKPEPLFKKIDDEQIEEELERLGG 554
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Length = 556 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 629 bits (1624), Expect = 0.0
Identities = 217/571 (38%), Positives = 315/571 (55%), Gaps = 31/571 (5%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IL+T+ALPY N PHLG++ + L+ADV+AR+ RLRGY ++ GTDE+GT E KA
Sbjct: 4 MKKILVTTALPYPNGPPHLGHLY-TYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA 62
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ DK H K+++K +ISFDNF RT++P+ E Q F KL +N +
Sbjct: 63 EKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLR 122
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC +C+RFL DR VEGTCP C E ARGDQCENCG+ L+ T+L +P C +
Sbjct: 123 EYEGLYCVSCERFLPDRYVEGTCP--KCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DL 259
P++R+ H F L ++KL E+ + + W N +LKEGLK ITR DL
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYES-NPDFIWPANRRNEVLNFLKEGLKDLSITRTDL 239
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCY-----TNEWEQWWKNPENVELYQFMGK 314
WG+PVP KV YVWFDA IGY+S +++++W + EL F+GK
Sbjct: 240 DWGIPVPG--DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADD-TELVHFIGK 296
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FH V +P+ L+ G L I +L E K SKS+G V ++ + V
Sbjct: 297 DIIRFHAVYWPAMLMAAGLP--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGV 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ RYYL PE SD F+W D + N +L N LGN NR L FI K + +VP
Sbjct: 354 DALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY----FDGVVP 409
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
A GA + + L + +E EAMEK + ++ L+ M+++S N Y+ E WKL
Sbjct: 410 AA-GAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKL 468
Query: 495 YKEDQPS-CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
KED+ + V+ ++ LV +LA LL PFMP + ++ QL L+ +
Sbjct: 469 AKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGA---- 524
Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
+ + GHK+G P PLF ++++ +E
Sbjct: 525 -----RQPLLPGHKLGPPEPLFPRIEEEAIE 550
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Length = 558 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 616 bits (1591), Expect = 0.0
Identities = 193/610 (31%), Positives = 298/610 (48%), Gaps = 53/610 (8%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
R IL+T ALPY N HLG+++ + AD++ R+ R+RG+ +++C D +GT KA
Sbjct: 1 MRKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA 59
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ +YH HK + F ISFDN+G T + + E Q I+ KL +N ++ E
Sbjct: 60 EKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEK 119
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T++Q Y FL DR V+GTCP C E GD CE CG + T+L +PK +
Sbjct: 120 TIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVCGATYSPTELINPKSAISGA 177
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P ++++ H F LP L+E+I +G N WL+EGL+ I+RD
Sbjct: 178 TPVLKESEHFFFKLPRFEEFLKEWITR---SGELQPNVANKMKEWLEEGLQDWDISRDAP 234
Query: 261 W-GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE-----WEQWWKNPENVELYQFMGK 314
+ G +P KVFYVW DAPIGY+S T ++ W+++WK + ELY F+GK
Sbjct: 235 YFGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGK 292
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FHT+ +P+ L G G + L + +L E K SKS+G ++ D ++
Sbjct: 293 DIIYFHTLFWPAMLEGAG--YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDP 349
Query: 375 EVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
+ RYYL PE + D F W D Q + N+EL+ + NF +R FI K + +
Sbjct: 350 DYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK----RFDGKL 405
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
PDA +L + E+ EA E + ++ L+ M+++ N Y+ +++ WK
Sbjct: 406 PDA--LADPELLEEFEAA----AEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWK 459
Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
L K+D V + L LA L+P +P + LNL+
Sbjct: 460 LAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELT------------ 507
Query: 554 RARRPWEII---PAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAE 610
W+ AGH I LF ++D ++E + A A+A AA A
Sbjct: 508 -----WDDAQQPLAGHPINKFKILFTRIEDKQIEALIEASKEAAA-----AKAAAAAAAA 557
Query: 611 QLKKTKISGE 620
L + I+
Sbjct: 558 PLAEEPIAET 567
|
Length = 673 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 565 bits (1458), Expect = 0.0
Identities = 225/559 (40%), Positives = 315/559 (56%), Gaps = 34/559 (6%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
ILIT+ALPY N PHLG+ + + ADV+AR+ RLRGY +++CGTDE+GT E KA ++
Sbjct: 1 ILITTALPYANGKPHLGHAY-TTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
+PKE+ DKYH KD +KW +ISFD F RT+ + E Q IF+KL +N ++ E ++
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIK 119
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Q YC C+ FL DR VEGTCP C E ARGD CE CG+ L T+L +P+CK+C P+
Sbjct: 120 QLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPE 177
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262
+RD+ H F L A +LEE+I +GS + N WLK GLK ITRDL WG
Sbjct: 178 LRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVS---ITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
+PVP + KV YVWFDA IGY+S I S T +W++WW N E+ EL F+GKD V F
Sbjct: 238 IPVPND--PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRF 295
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
HT+ +P+ L+G G L + YL E GK SKS G V +D ++ RY
Sbjct: 296 HTIYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRY 352
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RP D F+W D + N +L N LGN +NR L FI K + ++P +
Sbjct: 353 YLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKY----FNGVLPSEDIT 408
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
+ K L + + + +EQ EA+E + ++ L+ M ++ GN Y+ E++ W+L+K
Sbjct: 409 DEED--KKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFK-QS 465
Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
P ++ L+ +L+ LL P MP S ++ K LN + E +
Sbjct: 466 PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE--------LEWDFKLKLLE-- 515
Query: 560 EIIPAGHKIGSPNPLFKEL 578
GHK+ PLF ++
Sbjct: 516 -----GHKLNKAEPLFSKI 529
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 534 bits (1377), Expect = 0.0
Identities = 161/398 (40%), Positives = 235/398 (59%), Gaps = 13/398 (3%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
LIT+ALPYVN PH+G++ + + ADV+AR+ RLRGY+ +++ GTDE+GT E A ++
Sbjct: 1 FLITTALPYVNGPPHIGHLY-TTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
+P+E+ D+YH K+++K F+ISFD+F RT++ + E Q F KL + + E +
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYE 119
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
YC + +RFL DR VEGTCP C E ARGDQCE CG+ L T+L +P+ + + P+
Sbjct: 120 GWYCVSDERFLPDRYVEGTCP--YCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPE 177
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
+++ H F L ++KL E+I N + +WLKEGLK ITRDL WG+
Sbjct: 178 LKEEEHYFFRLSKFQDKLLEWIKE--NPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGI 235
Query: 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFH 320
PVP KV YVWFDA IGY+S T + +W+++W + + E+ F+GKD + FH
Sbjct: 236 PVP--GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFH 293
Query: 321 TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYY 380
+ +P+ L+ L + +L E GK SKS+G V ++ D V+ RYY
Sbjct: 294 AIYWPAMLM--AAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR-YGVDALRYY 350
Query: 381 LLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418
L PE D F+W D + N+EL N+LGN +NR L
Sbjct: 351 LAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-156
Identities = 153/373 (41%), Positives = 202/373 (54%), Gaps = 56/373 (15%)
Query: 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME 82
+LIT+ALPYVN VPHLG++ G+VL ADVFAR+ RLRGY+ +++ GTDE+GT E KA E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 83 DNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM 142
+ +P+E+CDKYH I KD++KW +ISFD F RT++P+ E Q FKKL +N ++ E
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEY 119
Query: 143 QQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAP 202
+ YC +C+RFL P
Sbjct: 120 EGLYCVSCERFL-----------------------------------------------P 132
Query: 203 QIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261
+ R+ H F L +++L E++ + W +NA +WLKEGLK ITRDL W
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEK-NPDFIWPENARNEVLSWLKEGLKDLSITRDLFDW 191
Query: 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQ-WWKNPENVELYQFMGKDNVPFH 320
G+PVPL KV YVWFDA IGY+S T Y EW WW EL F+GKD + FH
Sbjct: 192 GIPVPL--DPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFH 249
Query: 321 TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYY 380
+ +P+ LLG G L I YL E K SKS+G V +D + + RYY
Sbjct: 250 AIYWPAMLLGAG--LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYY 306
Query: 381 LLTNRPEVSDTLF 393
LL RPE D+ F
Sbjct: 307 LLRERPEGKDSDF 319
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = 4e-93
Identities = 156/577 (27%), Positives = 253/577 (43%), Gaps = 83/577 (14%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IT+ + Y N PH+G+ + L+ADV ARF RLRGY+ ++ GTDE+G + KA
Sbjct: 1 KKFYITTPIYYPNGKPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE 59
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
E SP+E+ D+ K +++ +IS+D+F RT+ P+ EA Q IF++LL N +
Sbjct: 60 EAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGK 119
Query: 142 MQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC C+ F + L+E +C
Sbjct: 120 YEGWYCVRCEEFYTESELIED------------------------------GYRCPPTGA 149
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA------WLKEGLKVRC 254
+ + F L ++KL E + IQ ++K GLK
Sbjct: 150 PVEWVEEESYFFRLSKYQDKLLELYEAN-------PDFIQPASRRNEVISFVKSGLKDLS 202
Query: 255 ITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENV 306
I+R + WG+PVP K V YVWFDA Y++ +E + ++W P +V
Sbjct: 203 ISRTNFDWGIPVP---GDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYW--PADV 257
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+GKD + FH V +P+ L+ G L K + +L + K SKS G + D
Sbjct: 258 ---HLIGKDILRFHAVYWPAFLMAAGLP--LPKRVFAHGFLTLDGEKMSKSLGNVI---D 309
Query: 367 AKD--TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
D V+ RY+LL P D F+ + N +L N+LGN R LS IAK
Sbjct: 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK- 368
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
+ VP+ + L E +E+ AM+ + + L+ +++ N
Sbjct: 369 ---NFDGKVPEPGALTEA--DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANK 423
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y+ E W L K D + V+ T + ++ +A LL+P MP + ++ QL ++ +++
Sbjct: 424 YIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRD 483
Query: 545 LCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
A W + G + P P+F L+++
Sbjct: 484 F---------AALSWGRLAPGTTLPKPEPIFPRLEEE 511
|
Length = 511 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 6e-76
Identities = 164/636 (25%), Positives = 272/636 (42%), Gaps = 132/636 (20%)
Query: 21 KRNILITSALPYVNNVPHLGN----IIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT 76
K+ IT+ + Y N PH+G+ I AD AR+ RL+GY+ ++ GTDE+G
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIA-----ADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN- 135
+ A + +P+E D+ K+++K DIS+D F RT+ + + Q IF+KL +
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGD 117
Query: 136 --------WLIENTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLN 186
W YC +C+ F + LV+G
Sbjct: 118 IYKGEYEGW---------YCVSCETFFTESQLVDG------------------------- 143
Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ------ 240
KC C ++ F + +++L EY + + IQ
Sbjct: 144 ------GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEE-------NPDFIQPESRKN 190
Query: 241 -ATHAWLKEGLKVRCITRD-LKWGVPVPLERFKEK-VFYVWFDAPIGYVS---ITSCYTN 294
+ ++K GL+ I+R WG+PVP F K V YVW DA + Y++ S
Sbjct: 191 EMINNFIKPGLEDLSISRTSFDWGIPVP---FDPKHVVYVWIDALLNYITALGYGSDDDE 247
Query: 295 EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKF 354
++++W P +V +GKD + FH + +P L+ G L K + + + GK
Sbjct: 248 LFKKFW--PADV---HLVGKDILRFHAIYWPIMLMALGL--PLPKKVFAHGWWLMKDGKM 300
Query: 355 SKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNEL 406
SKSKG + +G DA RYYLL P SD F+ L + N++L
Sbjct: 301 SKSKGNVVDPEELVDRYGLDA---------LRYYLLREVPFGSDGDFSPEALVERINSDL 351
Query: 407 LNNLGNFINRVLSFIAKPPGQGY-GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465
N+LGN +NR ++ I K Y +P + + L + ++ Y E ME+
Sbjct: 352 ANDLGNLLNRTVAMINK-----YFDGEIPAP--GNVTEFDEELIALAEETLKNYEELMEE 404
Query: 466 VKLKQGLKTAMSISSEGNAYLQESQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPF 523
++ + L+ + S N Y+ E+ W L K+ + + VM + +A LL PF
Sbjct: 405 LQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPF 464
Query: 524 MPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL-KDDE 582
MP S ++ +QL L+ E + W +PAG K+ PLF + ++E
Sbjct: 465 MPETSKKIFEQLGLEEEL---------TSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEE 515
Query: 583 VEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKIS 618
+ + + + GS A E + ++ +K +I+
Sbjct: 516 IAYIKEQMEGS-------APKEPEEKEKKPEKPEIT 544
|
Length = 648 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 2e-40
Identities = 149/579 (25%), Positives = 246/579 (42%), Gaps = 93/579 (16%)
Query: 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
++T+ L YVN PH+G+ + ++AD ARF RL G I+I GTDE+G T A +
Sbjct: 72 VLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 85 CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144
+P E CD ++ ++K DI++D F RT+ P+ + + ++ N + +
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190
Query: 145 PYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
YC C+ + ++ L+E C C V +
Sbjct: 191 LYCVNCEEYKDEKELLENNC-------------------------------CPVHQMPCV 219
Query: 204 IRDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-K 260
R ++ F L + LE+ + N V S+ N +Q+ W+K GL+ I+R L
Sbjct: 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQS---WIKSGLRDFSISRALVD 276
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELY------QFMGK 314
WG+PVP + ++ YVWFDA +GY+S T + +Q +N E + +GK
Sbjct: 277 WGIPVPDD--DKQTIYVWFDALLGYIS---ALTEDNKQ--QNLETAVSFGWPASLHLIGK 329
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGND 366
D + FH V +P+ L+ G L K + +L + K KS G + FG D
Sbjct: 330 DILRFHAVYWPAMLMSAG--LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPD 387
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
A RY+ L +D ++ N L N +GN +NR L + K
Sbjct: 388 AV---------RYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK--- 435
Query: 427 QGYGSIVPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485
++V D+ AE L T V K VE+ E + L + + I + GN Y
Sbjct: 436 NCESTLVEDSTVAAEGVPLKDT----VEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTY 491
Query: 486 LQESQFWKLYKEDQPSCSIVMRTSV---GLVHLLACLLEPFMPSFSVEVNKQLNLQPEK- 541
+ + W L+K+ S + V ++ ++A L P P S+ + QL ++
Sbjct: 492 MDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQF 551
Query: 542 -HISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELK 579
I+ D K W + G + +P+F ++
Sbjct: 552 NSITWSDTK---------WGGLKGGQVMEQASPVFARIE 581
|
Length = 616 |
| >gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-37
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Query: 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEA 462
N+EL NNLGN +NR L+ +K +G +VP+ G + + L E+ + +E+ EA
Sbjct: 2 NSELANNLGNLVNRTLNMASKY----FGGVVPEFGGLT--EEDEELLEEAEELLEEVAEA 55
Query: 463 MEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPS-CSIVMRTSVGLVHLLACLLE 521
ME+++ ++ L+ M ++ N Y+ E+ WKL KE+ P + V+ + L+ +LA LL
Sbjct: 56 MEELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLS 115
Query: 522 PFMPSFSVEVNKQL 535
PFMP + ++ QL
Sbjct: 116 PFMPETAEKILDQL 129
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Length = 129 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 37/207 (17%)
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258
R +R T F D+P + KL + + + +N ++A WL+ L I+R
Sbjct: 131 RGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEA---WLESLLD-WAISRQ 186
Query: 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITS--CYTNEWEQWWKNPENVELYQFMGKDN 316
WG P+P E VF VWFD+ IG + ++ + + +GKD
Sbjct: 187 RYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP-----ADWHLIGKDI 236
Query: 317 VPFHTVMFPSTLLGT-GENWTLMKTISVTEYLNYESG-KFSKSKG--------IGVFGND 366
+ + + L+ GE K + V ++ E G K SKSKG + +G D
Sbjct: 237 LRGWANFWITMLVALFGEIP--PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGAD 294
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLF 393
A RYYL + P D
Sbjct: 295 A---------LRYYLTSLAPYGDDIRL 312
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA--- 80
+T+ PY N HLG+ + ++ AD AR+ R+RGY ++ G D +G E KA
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 81 ----------MEDNCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIF 128
E PKE ++ HK+ ++ IS+D + T+ P+ ++A + IF
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 129 KKLLDN 134
+L +
Sbjct: 121 SRLYEK 126
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+ PY + H+G++ + DV AR+ R++GYN ++ G D +G E A++
Sbjct: 38 VLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKLLDNNWLIENTM 142
P + K K S D + R T P+ + Q F KL +
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEA 155
Query: 143 QQPYCDTCKRFLAD 156
+C LA+
Sbjct: 156 PVNWCPVDGTVLAN 169
|
Length = 814 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
I PY + H+G++ + D+ AR+ R++GYN ++ G D +G E A++
Sbjct: 4 ILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGR 62
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKL 131
P++ + K+ K S+D + R T P+ + Q +F KL
Sbjct: 63 DPEDWTEYNIKKMKEQLKRMGFSYD-WRREFTTCDPEYYKFTQWLFLKL 110
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 94/288 (32%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
P V H+G+ + + + D+ AR+ R++GYN ++ GTD G AT+ +
Sbjct: 10 PNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL---GIE 65
Query: 91 CDKYHVIHKD-----VYKW----------------FDISFDNFGRTSTPQQTEACQAIFK 129
H + ++ ++W + + T P + A Q F
Sbjct: 66 GKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFV 125
Query: 130 KLLDN----------NWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179
+L + NW C + ++D V C
Sbjct: 126 RLYEKGLIYRDNRLVNW----------CPKLRTAISDIEV------------------CS 157
Query: 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS-QNA 238
G ++ +P K PQ F+ + L K E + + + +
Sbjct: 158 RSGDVI------EPLLK-----PQW------FVKVKDLAKKALEAVKEGDI--KFVPERM 198
Query: 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286
+ WL E ++ CI+R L WG +P W+ G+
Sbjct: 199 EKRYENWL-ENIRDWCISRQLWWGHRIP----------AWYCKDGGHW 235
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
N H+G++ V D A+ R GY I D+ G A + + K
Sbjct: 6 ITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAF 64
Query: 91 CDKY-HVIHKDVYKWFDISFDN 111
+++ I +DV F + D
Sbjct: 65 VERWIERIKEDVEYMFLQAADF 86
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
K I S PY + H+G++ ++ DV +R+ R++GYN ++ G D +G E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTIT-DVLSRYYRMKGYNVLHPIGWDAFGLPAEN 84
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136
A++ P + + K + F +D T P+ + Q IF +L +
Sbjct: 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144
Query: 137 LIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176
+C LA+ V+ +G S RGD
Sbjct: 145 AYVKEADVNWCPNDGTVLANEQVDS----DGR---SWRGD 177
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE------------- 77
P + H+G+ + L D+ R+ R++G++ +++ G D +G TE
Sbjct: 32 PNATGLLHIGHALNKTLK-DIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
Query: 78 ------TKAMEDNCSPKEICDKYH-VIHKDVYK---WFDISFDNFGRTSTPQQTEACQAI 127
+ + C +E +Y I + D +D T P A +
Sbjct: 91 DRHKLGREKFREKC--REWKMEYADEIRSQFKRLGVSGD--WDREYFTLDPGLEAAVWRV 146
Query: 128 FKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160
F +L D + + L++ VE
Sbjct: 147 FVRLHDKGLIYRGKKPVNWSPALNTALSEAEVE 179
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
P V H+G+ + + D+ AR+ R++GYN +++ GTD G AT+ K
Sbjct: 42 PNVTGSLHIGHALNWSIQ-DIIARYKRMKGYNVLWLPGTDHAGIATQVK 89
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
P V H+G+ + L D+ AR+ R+RGYN ++ GTD G AT+
Sbjct: 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVV 89
|
Length = 877 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-------D 83
PY N HLG+ + +L D+ R+ ++G+N G D +G E K +
Sbjct: 45 PYANGSIHLGHALNKILK-DIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKK 103
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGR------------TSTPQQTEACQAIFKKL 131
S EI + + K + + F R T P E+ +FK+
Sbjct: 104 EISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEA 163
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVE 160
+ L + C+ LA+ VE
Sbjct: 164 HEKGLLYRGLKPVYWSPRCRTALAEAEVE 192
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 23/85 (27%)
Query: 31 PYVNNVPHLGNIIGSVLS---ADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP 87
P V+ H+G+ V S D AR+ R+RGYN + G D+ G TE K
Sbjct: 47 PTVSGSLHIGH----VFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKV------- 95
Query: 88 KEICDKYHVIHKDVYKWFDISFDNF 112
+KY+ I KD DIS + F
Sbjct: 96 ----EKYYGIRKD-----DISREEF 111
|
Length = 800 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
R T F+ + ++++L E + ++ W +N WL E + CI+R WG
Sbjct: 147 YRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRF---GNWL-ENRRDWCISRQRYWGT 202
Query: 264 PVPLERFKEK----------VFYVWFD---APIGYVSITSCYTNEWEQWWKNPENVELYQ 310
P+P+ ++ V VWFD P Y + + NE E +
Sbjct: 203 PIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMP--YAQLHYPFENEDF------EELFPAD 254
Query: 311 FM--GKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGN 365
F+ G D F++++ ST L K + V ++ E G K SKS G V
Sbjct: 255 FILEGSDQTRGWFYSLLLLSTAL---FGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQ 311
Query: 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393
+ D + R ++ ++ D F
Sbjct: 312 EVVDK-YGADALRLWVASSDVYAEDLRF 338
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
PY N +PH G+ + +L D+ R+ ++GY G D +G E K ++
Sbjct: 10 PYANGLPHYGHALNKILK-DIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 100.0 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 100.0 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.97 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.96 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.95 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.95 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.94 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.93 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.8 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.79 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.77 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.76 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.72 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.59 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.56 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.53 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.46 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.45 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.41 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 99.38 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.24 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.23 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 99.18 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 99.1 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.08 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 99.07 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 99.04 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 99.02 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 98.96 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 98.95 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 98.95 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 98.93 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 98.93 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 98.92 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 98.92 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 98.91 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 98.89 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 98.88 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 98.87 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 98.86 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 98.85 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 98.82 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 98.76 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 98.55 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 98.09 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 98.08 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 97.85 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.7 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 97.61 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 97.59 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 97.58 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 97.54 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 97.51 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.43 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 97.41 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 97.29 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 97.06 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 97.0 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 96.99 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 96.17 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 96.0 | |
| PF09190 | 63 | DALR_2: DALR domain; InterPro: IPR015273 The amino | 95.45 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 95.11 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA | 94.82 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 93.93 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 93.6 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 93.39 | |
| smart00836 | 122 | DALR_1 DALR anticodon binding domain. This all alp | 93.32 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 92.12 | |
| COG0073 | 123 | ARC1 EMAP domain [General function prediction only | 91.57 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 91.26 | |
| PF01588 | 95 | tRNA_bind: Putative tRNA binding domain; InterPro: | 90.93 | |
| PRK14714 | 1337 | DNA polymerase II large subunit; Provisional | 90.93 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 90.86 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 88.11 | |
| cd07963 | 156 | Anticodon_Ia_Cys Anticodon-binding domain of cyste | 86.87 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 84.94 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 84.71 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 84.38 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 83.84 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 82.85 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 82.84 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 82.63 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 82.38 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 81.52 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 81.45 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 80.54 |
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-139 Score=1197.22 Aligned_cols=631 Identities=80% Similarity=1.345 Sum_probs=559.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHH
Q 006368 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDK 93 (648)
Q Consensus 14 ~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~ 93 (648)
+.+|..+++++|||||+|||||+|||||++++||++||++||+|++|++|+|++|||+||+||+.+|+++|++|+++|++
T Consensus 9 ~~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CcCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 36788899999999999999999999999987899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCC
Q 006368 94 YHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESA 173 (648)
Q Consensus 94 ~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~ 173 (648)
+++.|+++|++|||++|.|+||++++|.+.||++|.+|+++|+||++++++|||++|++||+|++|+|+||.++|+++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccc
Q 006368 174 RGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253 (648)
Q Consensus 174 ~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~ 253 (648)
+||+||.||++++|.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..+.|++|+...+.+||++||+||
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~ 248 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPR 248 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887677899999988899999999999
Q ss_pred eeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 254 ~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
||||++.||||||.+++++||+||||||++||||++.+|..+|.+||++|.+++++||+||||++||+++|||||||+|.
T Consensus 249 ~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~ 328 (801)
T PLN02610 249 CITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 328 (801)
T ss_pred ceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCC
Confidence 99999999999999988899999999999999999888988899999876688899999999999999999999999999
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
+|++|+.+++||||+++|+|||||+||+|+|.++++..|++|++||||++.+|+++|.+|||+.|.+++|++|++++|||
T Consensus 329 ~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNl 408 (801)
T PLN02610 329 NWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNF 408 (801)
T ss_pred CcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999833999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+++|+.+....+++|.+|........+.|++|++.+.++.+++.++|++|+++.|++.|+++++.+|+||+..+||+
T Consensus 409 v~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~ 488 (801)
T PLN02610 409 INRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 488 (801)
T ss_pred HHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99999999820000688888853322234568899999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCC
Q 006368 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (648)
Q Consensus 494 l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 573 (648)
+.+++..++.+++++++++++++++||+||||++|++||++||++... .++.+....+......|+.+..|+.|+++++
T Consensus 489 L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 567 (801)
T PLN02610 489 LYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEP 567 (801)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCC
Confidence 988776778899999999999999999999999999999999986432 2222100000001112455677999999999
Q ss_pred CCCCCChHHHHHHHHHhccchhHH----HH-------HH----H-------HH-----------------------HHHH
Q 006368 574 LFKELKDDEVEFFRSKFAGSQADR----II-------RA----E-------AE-----------------------AAKT 608 (648)
Q Consensus 574 Lf~~i~~~~~~~~~~~~~~~~~~~----~~-------~~----~-------~~-----------------------~~~~ 608 (648)
||+||++++++++.+++.+.++++ ++ ++ + ++ ..++
T Consensus 568 lF~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlrV 647 (801)
T PLN02610 568 LFKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIRV 647 (801)
T ss_pred CCCCCCHHHHHHHHHHhccchhhhhhhhhcccccccccccccccccccccccccccccccccccccccccccceeeeeEE
Confidence 999999988877655543321110 00 00 0 00 0123
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEecccccc
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCF 646 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~ 646 (648)
+++++.+++++|+||+.++||+|+++.|||+ .|..++
T Consensus 648 g~I~~~~~hp~adkL~~~~Vd~G~~~~r~iv-sG~~~~ 684 (801)
T PLN02610 648 GLIVKAEKHPDADSLYVEEIDVGEGAPRTVV-SGLVKY 684 (801)
T ss_pred EEEEEEEeecCCCcceEEEEEeCCCceEEEE-eCcccc
Confidence 4556777888999999999999988899995 455544
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-139 Score=1133.56 Aligned_cols=546 Identities=39% Similarity=0.706 Sum_probs=511.7
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
.++++|||||+|||||+|||||+++ +|+|||++||+|++|++|+|+||||+||+||+.+|+++|++|+++|+++++.|+
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~-~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~ 179 (648)
++|+.|+|+||.|+|||+++|.+.||++|++|+++|+||.++++||||++|++||+|++|+|+||. ||+++++||+||
T Consensus 82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce 159 (558)
T COG0143 82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCE 159 (558)
T ss_pred HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-c
Q 006368 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-D 258 (648)
Q Consensus 180 ~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-~ 258 (648)
+||+.++|.+|++|+|++||+++++++++||||+|++|+++|++|+++++. ..||.++++++.+||++||+|||||| +
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCC
Confidence 999999999999999999999999999999999999999999999999884 36899999999999999999999999 7
Q ss_pred cCCCcccCCcCCCCceeeeeecccchHHHhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
++||||||+. ++||+|||||||+||||+++.+. .+|.+||+++ +++++|||||||++||++|||||||++|.
T Consensus 239 ~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~ 315 (558)
T COG0143 239 LDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGL 315 (558)
T ss_pred CCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCC
Confidence 9999999965 89999999999999999987664 5799999875 89999999999999999999999999998
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
+ +|+.+++||||+++|+|||||+||+|+|.++++ .|++|+|||||++..|+++|++||++.|.+++|++|+|++|||
T Consensus 316 ~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl 392 (558)
T COG0143 316 P--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNL 392 (558)
T ss_pred C--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+++|+.| +++|.+|....... +.|+++++.+.++.+.+.++|+.+++++|++.+|+|++.+|+||++.+||+
T Consensus 393 ~~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~ 467 (558)
T COG0143 393 ANRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWK 467 (558)
T ss_pred HHHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999 89999987542223 678899999999999999999999999999999999999999999999999
Q ss_pred hccCC-hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc-cccccccCcccccCCCCccCCCCCccCCC
Q 006368 494 LYKED-QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH-ISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (648)
Q Consensus 494 l~k~~-~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 571 (648)
+.|++ +++++++++.+++++|+++++|+||||.+|++|+++||.+.+.. .++.. .+..+..|+.++++
T Consensus 468 l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~----------~~~~l~~~~~~~~~ 537 (558)
T COG0143 468 LAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLG----------ARQPLLPGHKLGPP 537 (558)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhh----------hccccCCCcccCCc
Confidence 99875 68899999999999999999999999999999999999874332 11111 12246678999999
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 006368 572 NPLFKELKDDEVEFFRSKF 590 (648)
Q Consensus 572 ~~Lf~~i~~~~~~~~~~~~ 590 (648)
++||+|++.++++++.++.
T Consensus 538 ~~lF~ri~~~~~~~~~~~~ 556 (558)
T COG0143 538 EPLFPRIEEEAIEELIEAL 556 (558)
T ss_pred ccCccccCHHHHHHHHHhh
Confidence 9999999999888776543
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-122 Score=1049.52 Aligned_cols=584 Identities=33% Similarity=0.611 Sum_probs=526.0
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++++||||+|||||.|||||+++ +|.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~-~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHH-HHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
++.|||++|.|+||++++|.+.++++|.+|+++|+||++++.+|||+.|++||+|++|+|+||. |++++++|++||.|
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~--C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCC--CCCcccCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
|..+++.+|++|+|++||+++++++++||||+|++|+++|.+|+++.+ .||+++++.+.+||++||.||||||++.|
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~d~~ISR~~~W 235 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG---ELQPNVANKMKEWLEEGLQDWDISRDAPY 235 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhCCCcccceeeeCCc
Confidence 999999999999999999999999999999999999999999997643 37999999999999999999999999999
Q ss_pred -CcccCCcCCCCceeeeeecccchHHHhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCc
Q 006368 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (648)
Q Consensus 262 -Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~ 335 (648)
|||||++ +++++||||||++||+|++.+|+ ++|..||+.+.+++++||+||||++||+++|||||+++|+
T Consensus 236 ~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-- 311 (673)
T PRK00133 236 FGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-- 311 (673)
T ss_pred cceECCCC--CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC--
Confidence 9999976 79999999999999999886664 2599999433457789999999999999999999999986
Q ss_pred ccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCC-CCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 336 ~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++.++.+ +|.+|+++.+....|++++++++|++
T Consensus 312 ~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie-~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 312 RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCEEeeeccEEecCCcccccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999 799999999999989998 99999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+.+++.+ ++++.+|. .+.|+++++.+..+.+.+.++|++|+++.|++.++++++.+|+|++..+||.+
T Consensus 391 ~R~~~~~~k----~~~~~~~~------~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~ 460 (673)
T PRK00133 391 SRTAGFINK----RFDGKLPD------ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460 (673)
T ss_pred HHHHHHHHH----hcCCCCCC------CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 999999887 56665552 23477999999999999999999999999999999999999999999999998
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+++..++.++++++++++++++++|+||||++|++||++||.+. ..|.+ +..+..|+.++.+++|
T Consensus 461 ~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~---~~~~~-----------~~~~~~g~~~~~~~~l 526 (673)
T PRK00133 461 AKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEE---LTWDD-----------AQQPLAGHPINKFKIL 526 (673)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCc---cChhh-----------hcCCCCCCCcCCCCcC
Confidence 876667788899999999999999999999999999999999752 12221 1224468999999999
Q ss_pred CCCCChHHHHHHHHHhccchhHHHHHHH-H-------------------HHHHHHHHHhhhcccCCCCceeEEEecCCCc
Q 006368 575 FKELKDDEVEFFRSKFAGSQADRIIRAE-A-------------------EAAKTAEQLKKTKISGENGLCSLQSETSSNE 634 (648)
Q Consensus 575 f~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~ 634 (648)
|+|++++++++..+++++++++++++++ . -..+++++++.+++++++||+.+++|+|.+
T Consensus 527 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~- 605 (673)
T PRK00133 527 FTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVDLRVAKIVEAEKVEGADKLLKLTLDLGEE- 605 (673)
T ss_pred CcCCCHHHHHHHHHHhhcchhhcccchhcccccccCccccccCHHHHhhhhcceeeeEeeecCCCCCccceeeEecCCc-
Confidence 9999998888776665543332211110 0 012445778888999999999999999875
Q ss_pred cceEEec
Q 006368 635 GNQITCN 641 (648)
Q Consensus 635 ~~q~~~~ 641 (648)
.+||+|.
T Consensus 606 ~~~iv~g 612 (673)
T PRK00133 606 TRQVFSG 612 (673)
T ss_pred eeEEEcC
Confidence 8998653
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-122 Score=924.70 Aligned_cols=565 Identities=62% Similarity=1.103 Sum_probs=539.1
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHH
Q 006368 10 AAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89 (648)
Q Consensus 10 ~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e 89 (648)
++|.++.|+.++++++||++.||||..||+|++.+.+++|||++||.+.+|++..|+|||||+|++++.+|.++|++|++
T Consensus 2 ~~~~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~e 81 (567)
T KOG1247|consen 2 EKKDPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQE 81 (567)
T ss_pred CCCCCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccc
Q 006368 90 ICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCN 169 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~ 169 (648)
+|++++..|+..+++++|++|.|.|||.+.+...+|.+|.+|+++|+..+.+..++||..|++|++||+|+|+||. |+
T Consensus 82 lcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~--C~ 159 (567)
T KOG1247|consen 82 LCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPF--CG 159 (567)
T ss_pred HHHhcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcc
Q 006368 170 YESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEG 249 (648)
Q Consensus 170 ~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (648)
|++|+||||++||+.+++.+|.+|+|.+|...++.+.+.|+||.|+++++++.+|++.......|++|+.+++++||++|
T Consensus 160 yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~g 239 (567)
T KOG1247|consen 160 YDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDG 239 (567)
T ss_pred CccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999988766789999999999999999
Q ss_pred cccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhh
Q 006368 250 LKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329 (648)
Q Consensus 250 l~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~ 329 (648)
|.++|||||+.||+|||.++++++|+||||||++||+|.++.|.++|++||.+|.++++++|||||++.||+++||++++
T Consensus 240 l~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~l 319 (567)
T KOG1247|consen 240 LKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQL 319 (567)
T ss_pred ccccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHH
Q 006368 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNN 409 (648)
Q Consensus 330 a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 409 (648)
+++..|++-+++.+++||+.+..|||||+|..|...++.+.+.+++.+||||++.+|+.+|..|||++|..++|++|.++
T Consensus 320 gt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~N 399 (567)
T KOG1247|consen 320 GTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNN 399 (567)
T ss_pred cCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 410 LGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 410 l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
||||++|++.++.+ .++|.+|... ...-++.+++.++.+..++.++||..++++|++.+|++.+++|.|+|+.
T Consensus 400 LGNFvNR~l~fv~~----~~~g~Vp~~~---~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 400 LGNFVNRVLKFVAA----KYNGVVPEME---LTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred HHHHHHHHHHHHHH----hhCCccccee---ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 99999999999987 6899999752 2223778999999999999999999999999999999999999999999
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccC
Q 006368 490 QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIG 569 (648)
Q Consensus 490 ~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~ 569 (648)
+.|++...+++++..++.++++++..++.+|+||||.+|.+|++||++|.. -+.+ +.+..+++||+|+
T Consensus 473 ~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~---~~~~---------~~~~~l~~gH~ig 540 (567)
T KOG1247|consen 473 TDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPET---LFPD---------RFICRLLAGHRIG 540 (567)
T ss_pred cccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccc---cCCC---------ccceeecCcCccC
Confidence 999998888899999999999999999999999999999999999999742 1222 3455688999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhccchh
Q 006368 570 SPNPLFKELKDDEVEFFRSKFAGSQA 595 (648)
Q Consensus 570 ~~~~Lf~~i~~~~~~~~~~~~~~~~~ 595 (648)
+++|||+++++++|+++++++++.+.
T Consensus 541 ~~~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 541 TPSPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred CccHHHHhcCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999988753
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-113 Score=979.43 Aligned_cols=561 Identities=28% Similarity=0.517 Sum_probs=489.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||||+|||||.|||||+++ ||.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|+++++.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~-~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYT-TIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchH-HHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
+|++|||++|.|+||+++.|...++++|.+|.++|+||++++++|||+.|++||+++++
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l--------------------- 140 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL--------------------- 140 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh---------------------
Confidence 99999999999999999999999999999999999999999999999999999998763
Q ss_pred cCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH-HHHhcccccceeeec
Q 006368 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH-AWLKEGLKVRCITRD 258 (648)
Q Consensus 181 cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~gl~d~~IsR~ 258 (648)
++ ++|++||+++++++++||||+|++|+++|.+|+++++.. .+|++..+.+. +||++||+||||||+
T Consensus 141 ----------~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~ 209 (648)
T PRK12267 141 ----------VDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRT 209 (648)
T ss_pred ----------ccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCC
Confidence 22 567778999999999999999999999999999887532 36888888888 999999999999998
Q ss_pred -cCCCcccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 259 -LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 259 -~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
..||||||++ +++|+||||||+++|+|++ +|+ .+|++||| .+ +||+||||++||+++||+||+++|.
T Consensus 210 ~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~~~wp--~~---~~~~GkDii~fH~i~wpa~l~~~~~ 281 (648)
T PRK12267 210 SFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSDDDELFKKFWP--AD---VHLVGKDILRFHAIYWPIMLMALGL 281 (648)
T ss_pred CCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCCCchHHHhhcc--cc---eEEEeeeecchhHHHHHHHHHhCCC
Confidence 5899999987 6999999999999999987 664 36999994 45 8999999999999999999999985
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.|.+++|++|++++||+
T Consensus 282 --~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~-~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl 358 (648)
T PRK12267 282 --PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD-RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNL 358 (648)
T ss_pred --CCCcEEEecceEEECCceecccCCcccCHHHHHH-HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 5899999999999999999999999999999998 7999999999999889999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+.+++.+ ++++.+|... ...+.|+++++.++.+.+++.++|++|++++|++.++++++.+|+|++..+||.
T Consensus 359 ~~R~~~~~~~----~~~~~~p~~~--~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 359 LNRTVAMINK----YFDGEIPAPG--NVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHHHHH----hcCCcCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999987 6777776421 234568899999999999999999999999999999999999999999999999
Q ss_pred hccC--ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCC
Q 006368 494 LYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (648)
Q Consensus 494 l~k~--~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 571 (648)
+.++ +..++.++++++++++++++++|+||||++|++||++||.+... ..|.+ ...+..+..|+.|+.+
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~-~~~~~--------~~~~~~~~~g~~~~~~ 503 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEEL-TSWES--------LLEWGGLPAGTKVAKG 503 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccc-cchhh--------hhhhccccCCCccCCC
Confidence 8765 34678889999999999999999999999999999999985322 12221 0113446679999999
Q ss_pred CCCCCCCChH-HHHHHHHHhccchhHHHHHH-HHH--------------HHHHHHHHhhhcccCCCCceeEEEecCCCcc
Q 006368 572 NPLFKELKDD-EVEFFRSKFAGSQADRIIRA-EAE--------------AAKTAEQLKKTKISGENGLCSLQSETSSNEG 635 (648)
Q Consensus 572 ~~Lf~~i~~~-~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ 635 (648)
++||+|++++ +++.+. ++.+.++.+++++ ..+ ..+++++++.+++++++||+.+++|+|.++.
T Consensus 504 ~~lf~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~ 582 (648)
T PRK12267 504 EPLFPRIDVEEEIAYIK-EQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAEKVEKSDKLLKLQVDLGEEEP 582 (648)
T ss_pred CCCcCCCCcHHHHHHHH-HhhhhhhcccccccccCcccCccCHhhhhhhceeEEEEEeeccCCCCCccceEEEEeCCCce
Confidence 9999999975 454433 3222211111100 000 1123366778888999999999999987778
Q ss_pred ceEEec
Q 006368 636 NQITCN 641 (648)
Q Consensus 636 ~q~~~~ 641 (648)
|||.|.
T Consensus 583 ~~iv~g 588 (648)
T PRK12267 583 RQIVSG 588 (648)
T ss_pred EEEEeC
Confidence 999653
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-111 Score=933.73 Aligned_cols=509 Identities=25% Similarity=0.464 Sum_probs=451.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++|+||||||||||.||||||++ ++.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|.++|+++++.|++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~-~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYT-TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHH-HHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456999999999999999999998 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
+++.|||++|.|+||++|.|.+.||++|.+|+++|+||++++++|||++|++|+++.++.+
T Consensus 147 ~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------- 207 (616)
T PLN02224 147 LWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------- 207 (616)
T ss_pred HHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998754321
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec-c
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD-L 259 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~-~ 259 (648)
++.|..||+++++++++||||+|++|++.|++|+++++.. .+|++.++.+.+||++||+||||||+ .
T Consensus 208 -----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~-~~p~~~~~~~~~~l~~gL~d~~ISR~~~ 275 (616)
T PLN02224 208 -----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRF-VQPSYRLNEVQSWIKSGLRDFSISRALV 275 (616)
T ss_pred -----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhcCCCCccccCCCC
Confidence 2457788999999999999999999999999999887653 24777888899999999999999998 4
Q ss_pred CCCcccCCcCCCCceeeeeecccchHHHhccccchH------HHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 260 ~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~------~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
.||||||++ ++||+||||||++||||++..+..+ +..||+ .+ +||+||||++||+++|||||+++|+
T Consensus 276 ~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~--~~---v~~iGKDii~fH~i~wpa~l~~~g~ 348 (616)
T PLN02224 276 DWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWP--AS---LHLIGKDILRFHAVYWPAMLMSAGL 348 (616)
T ss_pred CCceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCCC--cc---eEEEeecccccHHHHHHHHHHHCCC
Confidence 899999987 6999999999999999987655421 334674 34 8999999999999999999999986
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+.+++||||+++|+|||||+||+|+|.++++ .||+|++||||++.+|+.+|++|+++.|.+++|++|++++||+
T Consensus 349 --~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~-~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNl 425 (616)
T PLN02224 349 --ELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ-KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNL 425 (616)
T ss_pred --CCCcEEEecccEecCCccccccCCccCCHHHHHH-HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|++.++.+ ++++.+|... .....++++.+.+..+++.+.++|+++++++|++.++++++.+|+|++..+||+
T Consensus 426 l~R~l~~~~k----~~~~~~~~~~--~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 426 LNRTLGLLKK----NCESTLVEDS--TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHH----hcCCcCCCcc--ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988 6777666421 112336789999999999999999999999999999999999999999999999
Q ss_pred hccCC---hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc--cccccccCcccccCCCCccCCCCCcc
Q 006368 494 LYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH--ISLCDEKGDVDRARRPWEIIPAGHKI 568 (648)
Q Consensus 494 l~k~~---~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~~l 568 (648)
+.+.+ ..++..+++++.++++++++||+||||++|++||++||.+.+.. ..|.+ ..++.++.|+.|
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~---------~~~~~~~~g~~i 570 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSD---------TKWGGLKGGQVM 570 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhh---------hccccCCCCCCC
Confidence 88753 24567788999999999999999999999999999999864321 11211 013345678899
Q ss_pred CCCCCCCCCCChHHHHHH
Q 006368 569 GSPNPLFKELKDDEVEFF 586 (648)
Q Consensus 569 ~~~~~Lf~~i~~~~~~~~ 586 (648)
+.+.+||+||+.++++.+
T Consensus 571 ~~~~~Lf~ri~~~~~~~~ 588 (616)
T PLN02224 571 EQASPVFARIELNPEKEE 588 (616)
T ss_pred CCCCCCCCCcCcchHHHH
Confidence 999999999996544443
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-110 Score=933.44 Aligned_cols=525 Identities=42% Similarity=0.784 Sum_probs=485.0
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
++||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~-~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYT-TILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999997 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCC
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~ 183 (648)
+|||++|.|+||+++.|...++++|++|.++|+||++++++|||+.|++|++|++|+|+||. |++++++|++|+.||.
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~--c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCC--CCCcccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccC-CC
Q 006368 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262 (648)
Q Consensus 184 ~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~-WG 262 (648)
.+++.+|++|+|++||++++.++++||||+|++|+++|.+++++++....||++..+.+.+||+++++||||||++. ||
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WG 237 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 99999999999999999999999999999999999999999998765556888988899999999999999999999 99
Q ss_pred cccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccC
Q 006368 263 VPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (648)
Q Consensus 263 i~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p 338 (648)
||+|.+ +++++||||||+++|++.+ +++ .+|++||+.+.+++++|++|+||++||+++||||++++|. ++|
T Consensus 238 ipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~--~~~ 312 (530)
T TIGR00398 238 IPVPND--PNKVVYVWFDALIGYISSL-GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL--PLP 312 (530)
T ss_pred eeCCCC--CCcEEEEeecchHHhHhhh-ccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC--CCC
Confidence 999988 6999999999999999865 332 4689999865578899999999999999999999999985 579
Q ss_pred ceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHH
Q 006368 339 KTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418 (648)
Q Consensus 339 ~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~ 418 (648)
+.+++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++|+++.+.+..|++++++++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~-~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHH-HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 799999999999888889999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 006368 419 SFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED 498 (648)
Q Consensus 419 ~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~ 498 (648)
+++.+ ++++.+|... ...+.|+++++.+..+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+.+.+
T Consensus 392 ~~~~~----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKK----YFNGVLPSED--ITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHH----hcCCcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 99887 4555555321 23467889999999999999999999999999999999999999999999999988654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCCCCCC
Q 006368 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578 (648)
Q Consensus 499 ~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf~~i 578 (648)
. ++.++++++.+++++++++|+||||++|++||++||.+.... . ...+..|+.++.+.+||+|+
T Consensus 466 ~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~----~-----------~~~~~~~~~i~~~~~lf~ki 529 (530)
T TIGR00398 466 P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWD----F-----------KLKLLEGHKLNKAEPLFSKI 529 (530)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhh----h-----------hcCCCCCCCCCCCCCCCCCC
Confidence 4 677889999999999999999999999999999999753211 0 01244689999999999998
Q ss_pred C
Q 006368 579 K 579 (648)
Q Consensus 579 ~ 579 (648)
+
T Consensus 530 ~ 530 (530)
T TIGR00398 530 E 530 (530)
T ss_pred C
Confidence 5
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-110 Score=937.86 Aligned_cols=548 Identities=44% Similarity=0.819 Sum_probs=496.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++||+|+|||||.|||||+++.|+.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|+++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999965889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||++++|.+.++++|.+|+++|+||++.+.+|||+.|++||++++|.|+||. |++.+++|+.||.
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCC--CCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccC
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~ 260 (648)
||+.+++.+|++|+|++||++++++.++||||++++|++.|.+++++. ..||+...+++.+||+++++||||||++.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~---~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~ 236 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS---GDWPPNVLNFTLNWLKEGLKPRAITRDLD 236 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHhCCCCCcCceeeCC
Confidence 999999999999999999999999999999999999999999999853 35799999999999998899999999999
Q ss_pred CCcccCCcCCCCceeeeeecccchHHHhcccc------chHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC
Q 006368 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (648)
Q Consensus 261 WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~ 334 (648)
||+|+|.+..+++++||||||+++|++....+ +++|..||.+ .+...+|++|+||++||+++||+++++.|.+
T Consensus 237 WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~d-s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~ 315 (556)
T PRK12268 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLD-PETKSYYFIGKDNIPFHSIIWPAMLLGSGEP 315 (556)
T ss_pred CCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCC-CCCeEEEEEeeccCcchHHHHHHHHHhcCCC
Confidence 99999954457899999999999999865433 2368889942 2345699999999999999999999999966
Q ss_pred cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 335 ~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
+++|+.+++||||+++|+|||||+||+|+|.|+++ .||+|++|||+++.++..+|++|+++.+....|++++++++|++
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~-~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALE-RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 67889999999999999999999999999999999 79999999999998888999999999999888999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+..++.+ ..++.+|. ....+.|+++++.+..+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 395 ~r~~~~~~~----~~~~~~~~---~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~ 467 (556)
T PRK12268 395 NRVLSFIEK----YFGGIVPP---GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467 (556)
T ss_pred HHHHHHHHH----hcCCcCCC---CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999999876 34444441 12345688999999999999999999999999999999999999999999999988
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+.+...+..+++++.+++++++.+|+||||++|++||++||.+......|.+ +..++.|+.|+.+++|
T Consensus 468 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~-----------~~~~~~g~~i~~~~~l 536 (556)
T PRK12268 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWES-----------LKPLLPGHPINKPEPL 536 (556)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhh-----------hcCCCCCCCCCCCCCC
Confidence 76556667788999999999999999999999999999999973111111211 1135679999999999
Q ss_pred CCCCChHHHHHHHHHhccc
Q 006368 575 FKELKDDEVEFFRSKFAGS 593 (648)
Q Consensus 575 f~~i~~~~~~~~~~~~~~~ 593 (648)
|+|+++++++++++.++++
T Consensus 537 f~r~~~~~~~~~~~~~~~~ 555 (556)
T PRK12268 537 FKKIDDEQIEEELERLGGA 555 (556)
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 9999999999999887764
|
|
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-110 Score=836.48 Aligned_cols=480 Identities=29% Similarity=0.472 Sum_probs=428.8
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+.+++++|||+.|||.+|||||+|++ |.+|+++|++|++|..|+|.+||||||.||+.+|+.+|..|.++||+.++.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~-llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYST-LLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHH-HHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 34589999999999999999999995 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc-ccCCCCccccCCCCCccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQC 178 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~c 178 (648)
++++.+||+|+.|+|||+|.|...||+||..+.++|+||.+.++||||++||+|++++.|. ..||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999998774 34443
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
|+ ++...+|++++++++.+|||+||+|+..|.++++++|.+. .|....+.+.+||+.||+|+||||.
T Consensus 183 ---gk---------~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fv-qPs~~~~qVl~~lktglpDlSISRp 249 (578)
T KOG0436|consen 183 ---GK---------VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFV-QPSYFHNQVLSWLKTGLPDLSISRP 249 (578)
T ss_pred ---Cc---------eeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCcc-CchHHHHHHHHHHHcCCCcccccCh
Confidence 11 3445679999999999999999999999999999999763 4666778899999999999999994
Q ss_pred ---cCCCcccCCcCCCCceeeeeecccchHHHhccccch-------HHHhhcCCCCCcceEEEEeccccchhHhHHHHHh
Q 006368 259 ---LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-------EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (648)
Q Consensus 259 ---~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~-------~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l 328 (648)
++||||||+| +.++|||||||++||||+. +++. .+.-+||. . +|+|||||++||++||||||
T Consensus 250 sarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~~~~N~k~~ls~~wPa--t---~HvIGKDIlrFHavYWPafL 321 (578)
T KOG0436|consen 250 SARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPNKQQNLKTALSFGWPA--T---LHVIGKDILRFHAVYWPAFL 321 (578)
T ss_pred hhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCchhccccceeecCCCc--e---eeehhhhhhhhhhhhhHHHH
Confidence 7799999998 6999999999999999985 6652 36667953 4 89999999999999999999
Q ss_pred hhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 329 ~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
||+|++ +|+.+++||||+.+|.|||||+||||+|.++++ +||+|++|||||+++..+.|.||+++.+....|.+|++
T Consensus 322 maAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~-kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 322 MAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQ-KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HhcCCC--CccEEEEeeeeeecceecchhhccccCHHHHHH-HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 999986 899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHH--hhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 409 NLGNFINRVLS--FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 409 ~l~N~~~R~~~--~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
++||+++|+++ +..+.. ..+.+-.. .........|...+..+++.+.+.+|+|.+++|++.++++++.+|.|+
T Consensus 399 ~lG~LlnRc~gkkln~sn~---e~~l~~~s--~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlv 473 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISNC---ESTLVVDS--PTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLV 473 (578)
T ss_pred HHHHHHHHHhhcccChhcc---ccccccCC--cchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 333310 11111111 011122336888999999999999999999999999999999999999
Q ss_pred HhhhhhhhccCCh---hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc
Q 006368 487 QESQFWKLYKEDQ---PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542 (648)
Q Consensus 487 ~~~~pw~l~k~~~---~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~ 542 (648)
|..+||++.++.. +.+..++..+++++|+++++|+|++|.+|.+++.+||++.+++
T Consensus 474 q~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 474 QQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred hhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 9999999987643 5678889999999999999999999999999999999987654
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-104 Score=849.39 Aligned_cols=385 Identities=41% Similarity=0.816 Sum_probs=342.6
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
||||||+|||||+|||||++ +||.||+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCC
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~ 183 (648)
++||++|.|+||++++|++.|+++|++|+++|+||++++++|||++|++|++|++|+|+||. |+++.++|++|+.||+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~--C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPY--CGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETT--T--SSCTTTEETTTSS
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccC--cCccccCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCc
Q 006368 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263 (648)
Q Consensus 184 ~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi 263 (648)
.++|.+|++|+|..||++++++++++|||+|++|+++|.+|+++.+.. |++++++.+.+||++||+|+||||+.+|||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 999999999999999999999999999999999999999999988754 889999999999999999999999999999
Q ss_pred ccCCcCCCCceeeeeecccchHHHhccccc------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc
Q 006368 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (648)
Q Consensus 264 ~vP~~~~~~~v~yVWfDa~~~yis~~~~~~------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~ 337 (648)
|||++ ++||+||||||++||+|++..+. ..|.+||..+.+++++||+||||++||+++|||||+|+|++ +
T Consensus 236 ~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~--l 311 (391)
T PF09334_consen 236 PVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLP--L 311 (391)
T ss_dssp EETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----
T ss_pred eeecc--CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCC--C
Confidence 99966 79999999999999999875543 46999995456789999999999999999999999998764 8
Q ss_pred CceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHH
Q 006368 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (648)
Q Consensus 338 p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~ 417 (648)
|+.+++||||+++|+|||||+||+|++.++++ .|++|++||||++.+|+.+|.+|+++.|.+++|++|++++||+++|+
T Consensus 312 P~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~-~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 312 PRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLE-EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp -SEEEEE--EEETTCCEETTTTESSBHHHHHH-HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCEEEeeeeEEECCeeccccCCcccCHHHHHH-hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 89999999999999999999999999999999 69999999999999999999999999999999999999999999998
Q ss_pred H
Q 006368 418 L 418 (648)
Q Consensus 418 ~ 418 (648)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 5
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-96 Score=821.96 Aligned_cols=502 Identities=29% Similarity=0.547 Sum_probs=449.1
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++++||+|+|||||.+||||+++ +|.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|+++++.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~-~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYT-TLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
+++|||++|.|++|+++.|...|+++|.+|.++|+||++.+++|||++|++|++++++...
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~------------------- 140 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIED------------------- 140 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998764310
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-ccC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DLK 260 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-~~~ 260 (648)
.|+|++||+++++++++||||+|++|++.|.+++++++.. .+|+..++.+.+|+++++.|||||| ++.
T Consensus 141 ----------~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~D~~isR~~~~ 209 (511)
T PRK11893 141 ----------GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF-IQPASRRNEVISFVKSGLKDLSISRTNFD 209 (511)
T ss_pred ----------CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHHCCCCCcccCCCCCC
Confidence 1679999999999999999999999999999999875422 3577788888999999999999999 899
Q ss_pred CCcccCCcCCCCceeeeeecccchHHHhccccc-------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 261 WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
||+|+|++ +++++||||||+++|++.. +++ ++|..||+ .| +|++|+|+++||+++|||++++++.
T Consensus 210 WGipiP~~--~~~~~~vWfda~~~y~s~~-~~p~~~~~~~~~~~~~~~--~D---~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 210 WGIPVPGD--PKHVIYVWFDALTNYLTAL-GYPDDEELLAELFNKYWP--AD---VHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred CCccCCCC--CCceEEEEecCcHHHHhHh-ccccccccchhHHHhcCC--Cc---ceEecccccccchhHHHHHHHhCCC
Confidence 99999987 6999999999999999975 342 35889995 46 7999999999999999999999865
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+++++||||+++|+|||||+||+|++.|+++ .||+|++||||++.+++.+|++|+++.+.+++|+++.+.++|+
T Consensus 282 --~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~-~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~ 358 (511)
T PRK11893 282 --PLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD-EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNL 358 (511)
T ss_pred --CCCCEEEeeccEEECCeeecccCCcEEcHHHHHH-HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999 7999999999999889899999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+.+++.+ .+++.+|... ...+.|+++++.+..+.+.+.++|++|+++.|+..++++++.+|.|++..+||.
T Consensus 359 ~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~ 432 (511)
T PRK11893 359 AQRTLSMIAK----NFDGKVPEPG--ALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHH----hcCCCCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999999886 3445455321 234567889999999999999999999999999999999999999999999998
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCC
Q 006368 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (648)
Q Consensus 494 l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 573 (648)
+.+++..++.+++.++.++++.++++|+||||++|++||++||.+.+....+.+ . .+..++.|+.|+.+++
T Consensus 433 ~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~ 503 (511)
T PRK11893 433 LAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAA-------L--SWGRLAPGTTLPKPEP 503 (511)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhh-------h--hcccCCCCCCCCCCCC
Confidence 876666788999999999999999999999999999999999975432101111 0 1334567999998999
Q ss_pred CCCCCCh
Q 006368 574 LFKELKD 580 (648)
Q Consensus 574 Lf~~i~~ 580 (648)
||+++++
T Consensus 504 lf~~~~~ 510 (511)
T PRK11893 504 IFPRLEE 510 (511)
T ss_pred CccCCCC
Confidence 9999975
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=754.42 Aligned_cols=504 Identities=19% Similarity=0.257 Sum_probs=422.7
Q ss_pred CCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----C
Q 006368 11 APPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----N 84 (648)
Q Consensus 11 ~~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g 84 (648)
+...|.+. .++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||.||+..+++. |
T Consensus 20 ~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g 98 (861)
T TIGR00422 20 KSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALN-WSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEG 98 (861)
T ss_pred HCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHH-HHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccC
Confidence 34444442 35677999999999999999999999 56799999999999999999999999999999887754 6
Q ss_pred CCH------------HHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 85 CSP------------KEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 85 ~~~------------~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
+++ .++++++...+++++++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|
T Consensus 99 ~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~ 178 (861)
T TIGR00422 99 KTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKL 178 (861)
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCC
Confidence 665 477899999999999999999984 245999999999999999999999999999999999999
Q ss_pred Cccccccccc----------------------------------------------------------------------
Q 006368 151 KRFLADRLVE---------------------------------------------------------------------- 160 (648)
Q Consensus 151 ~~~l~d~~v~---------------------------------------------------------------------- 160 (648)
+++|+|.+|+
T Consensus 179 ~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~ 258 (861)
T TIGR00422 179 NTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIAD 258 (861)
T ss_pred CCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeec
Confidence 9999997642
Q ss_pred -------cc-----CCCCcccc----------------CCCCCccccccCCC------------------------CCcc
Q 006368 161 -------GT-----CPFEGCNY----------------ESARGDQCENCGKL------------------------LNAT 188 (648)
Q Consensus 161 -------g~-----cp~~~c~~----------------~~~~g~~c~~cg~~------------------------l~~~ 188 (648)
|| ||. |+. -+..|..|+.||.+ ..+.
T Consensus 259 ~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 336 (861)
T TIGR00422 259 EYVDMEFGTGAVKVTPA--HDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPH 336 (861)
T ss_pred CCCCcccCCCceEecCC--CChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeee
Confidence 11 332 221 15678888888875 1223
Q ss_pred ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc
Q 006368 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (648)
Q Consensus 189 el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~ 268 (648)
+...|+|+|||++++.+.++|||++++++++++.++++++.. ..+|++..+...+||+. ++|||||||+.||+|||.|
T Consensus 337 ~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i-~~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~piP~w 414 (861)
T TIGR00422 337 THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEI-KFVPKRMEKRYLNWLRN-IKDWCISRQLIWGHRIPVW 414 (861)
T ss_pred eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCe-EEEChHHHHHHHHHHhc-cccceeeeecccCCcceEE
Confidence 446799999999999999999999999999999999985432 12588888999999986 9999999999999999985
Q ss_pred CCC-----------------------------CceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccc
Q 006368 269 RFK-----------------------------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 269 ~~~-----------------------------~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
.++ .+|+||||||.++|++.. +|+ .+|+.||| .| +|++|+||
T Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~P--~d---~~~~G~Di 488 (861)
T TIGR00422 415 YCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFYP--TD---LLVTGYDI 488 (861)
T ss_pred EECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHh-CCCCChHHHhhcCC--cc---eeecchhh
Confidence 321 368889999999999875 676 36888995 46 89999999
Q ss_pred cchhHhHHHHHhhhcCCCcccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 317 VPFHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 317 ~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
++||.++|+++.+++... .|++++++|||++. +|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|++
T Consensus 489 i~fw~~~~~~~~~~~~~~-~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~~~~~~d~~f~~ 566 (861)
T TIGR00422 489 IFFWVARMIFRSLALTGQ-VPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLASLVTPGDDINFDW 566 (861)
T ss_pred hhHHHHHHHHHHHHhcCC-CchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceecH
Confidence 999999999988877433 34599999999985 99999999999999999998 7999999999998888789999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i 475 (648)
+.+.+. .+++++|+| +.|...+..+ .+++ ++... ......|+++++.++.+++.+.++|++|+++.|++.+
T Consensus 567 ~~~~~~--~~~~nkl~N-~~rf~~~~~~----~~~~-~~~~~-~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l 637 (861)
T TIGR00422 567 KRVESA--RNFLNKLWN-ASRFVLMNLS----DDLE-LSGGE-EKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKAL 637 (861)
T ss_pred HHHHHH--HHHHHHHHH-HHHHHHhccc----cccc-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999876 559999999 4555444332 2221 22111 1235678999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 476 MSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++++ ..+|.|++..+||.... +......++.++.++++.+++||+||||++|++||++|+.
T Consensus 638 ~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 638 YEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 9996 78999999999998643 3345567888999999999999999999999999999984
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-81 Score=729.10 Aligned_cols=493 Identities=22% Similarity=0.291 Sum_probs=410.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCHH----------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSPK---------- 88 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~~---------- 88 (648)
++++|+|++|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|++. |++++
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~ 114 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFS-YTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIEL 114 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHh-HHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHH
Confidence 4678999999999999999999998 67899999999999999999999999999999999984 88776
Q ss_pred --HHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc----
Q 006368 89 --EICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---- 160 (648)
Q Consensus 89 --e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---- 160 (648)
++++++.+.+++++++||+++| .+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~ 194 (800)
T PRK13208 115 CRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRER 194 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccc
Confidence 5999999999999999999988 78999999999999999999999999999999999999999999999763
Q ss_pred --------------------ccCCC--Ccccc---------------------------------------------CCC
Q 006368 161 --------------------GTCPF--EGCNY---------------------------------------------ESA 173 (648)
Q Consensus 161 --------------------g~cp~--~~c~~---------------------------------------------~~~ 173 (648)
.|||. +||.+ .-.
T Consensus 195 ~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p 274 (800)
T PRK13208 195 EGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 274 (800)
T ss_pred cceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCC
Confidence 46774 23322 012
Q ss_pred CCcccc-----------------------ccC----------------------CCCCcccc--CCCcCCCCCCCcEEee
Q 006368 174 RGDQCE-----------------------NCG----------------------KLLNATDL--KDPKCKVCRNAPQIRD 206 (648)
Q Consensus 174 ~g~~c~-----------------------~cg----------------------~~l~~~el--~~~~~~~~g~~~~~~~ 206 (648)
.|+.|| +|| ..+..+++ ..|+|+|||++++.+.
T Consensus 275 ~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 354 (800)
T PRK13208 275 FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354 (800)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEec
Confidence 445555 232 12222222 2499999999999999
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC----------------
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF---------------- 270 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~---------------- 270 (648)
++|||++++++++++.+++++.. ..|++.++++.+||++..+|||||||+.||+|||.+.+
T Consensus 355 ~~qwfl~~~~~~~~~~~~~~~~~---~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~ 431 (800)
T PRK13208 355 TRQWFIKVLDLKEELLERGKEIN---WYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPV 431 (800)
T ss_pred cceeeEeCHHHHHHHHHhhcCcE---EECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhcc
Confidence 99999999999999999998754 25788888999999974449999999999999995211
Q ss_pred ----------------------CCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHH
Q 006368 271 ----------------------KEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (648)
Q Consensus 271 ----------------------~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~p 325 (648)
+.+|+|||||+.+.+++.. +|+ ..|..|| |.| +++.|+||++||..++.
T Consensus 432 ~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~--P~d---~~~~G~Di~~~w~~~~l 505 (800)
T PRK13208 432 DPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVF--PMD---LRPQGHDIIRTWLFYTI 505 (800)
T ss_pred CchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcC--Cce---EEEeecchhhhHHHHHH
Confidence 1369999999999888653 664 3588888 456 89999999999988876
Q ss_pred HHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhH
Q 006368 326 STLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (648)
Q Consensus 326 a~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 404 (648)
++-+++... .+++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||+ .++..+|++|+++.+.. ++
T Consensus 506 ~~~~~~~~~-~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~--~~ 580 (800)
T PRK13208 506 LRAYLLTGK-LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-KYGADAVRYWAA-SARLGSDTPFDEKQVKI--GR 580 (800)
T ss_pred HHHHHhcCC-CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-HcCccHHHHHHh-cCCCCCCceecHHHHHH--HH
Confidence 544333222 2458999999997 699999999999999999998 799999999999 68888999999999875 58
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HH
Q 006368 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EG 482 (648)
Q Consensus 405 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~--~~ 482 (648)
+++++++|+++++..+ .+ .+..+.. ......|+++++.++.+++++.++|++|+++.|++.+++++. .+
T Consensus 581 ~~l~kl~N~~r~~~~~-~~------~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~ 651 (800)
T PRK13208 581 RLLTKLWNASRFVLHF-SA------DPEPDKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFC 651 (800)
T ss_pred HHHHHHHHHHHHHHhc-cc------ccccCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 9999999998776532 21 0111111 123467899999999999999999999999999999999985 59
Q ss_pred HHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 483 NAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 483 N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
|.|++..+||............++.++.++++.+++||+||||++|++||++|+
T Consensus 652 n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 652 DDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 999999999875433223356778899999999999999999999999999998
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=731.23 Aligned_cols=494 Identities=19% Similarity=0.266 Sum_probs=403.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-----CCC--------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-----NCS-------- 86 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-----g~~-------- 86 (648)
++++|+|+.|||||||.+||||+++. +.+||++||+||+||+|+|++|+|+||.+++..+++. |.+
T Consensus 46 ~~~~f~i~~pPP~~nG~lHiGH~~~~-~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~ 124 (1052)
T PRK14900 46 TRPPFSIVLPPPNVTGSLHLGHALTA-TLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREA 124 (1052)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHhh-HHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHH
Confidence 46679999999999999999999994 6699999999999999999999999999999877652 333
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 87 ----PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 87 ----~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
+.++++++...++++|++||+++|. -+.|.++.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.+|+
T Consensus 125 f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 125 FLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 3457788999999999999999884 3558999999999999999999999999999999999999999999886
Q ss_pred cc--------------------------CCC--Ccccc------------------------------------C-----
Q 006368 161 GT--------------------------CPF--EGCNY------------------------------------E----- 171 (648)
Q Consensus 161 g~--------------------------cp~--~~c~~------------------------------------~----- 171 (648)
.. .|+ +||.+ +
T Consensus 205 ~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GT 284 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGT 284 (1052)
T ss_pred ccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCC
Confidence 31 121 01000 0
Q ss_pred ----------------------------CCCCccccccCCCC----------------------C--ccccCCCcCCCCC
Q 006368 172 ----------------------------SARGDQCENCGKLL----------------------N--ATDLKDPKCKVCR 199 (648)
Q Consensus 172 ----------------------------~~~g~~c~~cg~~l----------------------~--~~el~~~~~~~~g 199 (648)
+..|...+.+|.+- . +.+...|+|+|||
T Consensus 285 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~ 364 (1052)
T PRK14900 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSA 364 (1052)
T ss_pred CeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCC
Confidence 11111111122110 0 0122468999999
Q ss_pred CCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------
Q 006368 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------- 270 (648)
Q Consensus 200 ~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------- 270 (648)
++++.+.++||||++++|++++.+++++.+. ..+|.+..+.+.+||+ +++|||||||+.||+|||.|.+
T Consensus 365 ~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~ 442 (1052)
T PRK14900 365 TILEPLLSDQWYVRIEPLARPAIEAVEQGRT-RFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQIPAWYCPDGHVTVAR 442 (1052)
T ss_pred ceEEEEeccceeeehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEeecCCCceeCeEEcCCCcEEecc
Confidence 9999999999999999999999999986442 2358888889999998 4999999999999999998631
Q ss_pred ----------------CCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhc
Q 006368 271 ----------------KEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (648)
Q Consensus 271 ----------------~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~ 331 (648)
+.+|+||||||+++|++.+ +|+ .+|..||| .| +|++|+||++| |+++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~P--~d---~~~~G~Dii~~----W~a~~l~~ 512 (1052)
T PRK14900 443 ETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTM-GWPEQTDTLRTFYP--TS---VMETGHDIIFF----WVARMMMM 512 (1052)
T ss_pred cccccccccCccceecCCceEEEEEcCChHHHHHH-cCCCchHHHHhhCC--ch---hhcccccHHhH----HHHHHHHH
Confidence 3589999999999999875 675 35888995 46 79999999975 77777766
Q ss_pred CCC---cccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHH
Q 006368 332 GEN---WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (648)
Q Consensus 332 g~~---~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 407 (648)
|+. ..|++.+++||||+. +|+|||||+||+|+|.++++ .||+|+|||||++..+.++|++|+++.+... ++++
T Consensus 513 ~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~ 589 (1052)
T PRK14900 513 GLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-QYGADALRFTLAALTAQGRDIKLAKERIEGY--RAFA 589 (1052)
T ss_pred HHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-HhCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHH
Confidence 542 234599999999986 99999999999999999998 7999999999999889999999999999654 5799
Q ss_pred HHHhHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGN 483 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~--~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N 483 (648)
++++| ++|+..+..+ .+ ++..+.. ......|+++++.++.++..+.++|++|+|+.|++.+++|+ ..+|
T Consensus 590 nkl~N-~~R~~~~~~~----~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n 662 (1052)
T PRK14900 590 NKLWN-ASRFALMNLS----GYQERGEDPAR--LARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCD 662 (1052)
T ss_pred HHHHH-HHHHHHHhhh----ccCcccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhH
Confidence 99999 5676655433 22 2222221 12346789999999999999999999999999999999997 5899
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.||+..+|| +.+.+......++.++.++++.+++||+||||++|++||++|+.
T Consensus 663 ~Yie~~k~~-l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 663 WYIELAKEA-LASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHhccHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999886 44444445556778888999999999999999999999999974
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=711.43 Aligned_cols=489 Identities=19% Similarity=0.240 Sum_probs=401.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cCCCHHH-------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DNCSPKE------- 89 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g~~~~e------- 89 (648)
+++|+|++|||||||.+|||||++ ++.+|+++||+||+|++|+|++|+|+||.+++.+.++ +|+++.+
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~ 113 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALN-NTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFL 113 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHH
Confidence 456999999999999999999999 4669999999999999999999999999987666543 4776654
Q ss_pred -----HHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc-
Q 006368 90 -----ICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG- 161 (648)
Q Consensus 90 -----~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g- 161 (648)
+++++...+++++++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+|.+|+.
T Consensus 114 ~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~ 193 (874)
T PRK05729 114 EKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK 193 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccc
Confidence 5889999999999999999983 35699999999999999999999999999999999999999999998861
Q ss_pred -----------------------------------------------------cCCCCcccc------------------
Q 006368 162 -----------------------------------------------------TCPFEGCNY------------------ 170 (648)
Q Consensus 162 -----------------------------------------------------~cp~~~c~~------------------ 170 (648)
.||. |+.
T Consensus 194 ~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~--~~~~ipii~~~~V~~~~GTG~ 271 (874)
T PRK05729 194 EVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPL--VGREIPIIADEYVDPEFGTGA 271 (874)
T ss_pred cccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCC--CCCeeeEecCccCCCCCCCcc
Confidence 1332 221
Q ss_pred -------------------------CCCCCccccccCCCC------------------------CccccCCCcCCCCCCC
Q 006368 171 -------------------------ESARGDQCENCGKLL------------------------NATDLKDPKCKVCRNA 201 (648)
Q Consensus 171 -------------------------~~~~g~~c~~cg~~l------------------------~~~el~~~~~~~~g~~ 201 (648)
-+..|..++.||..- .+.+...|+|+|||++
T Consensus 272 V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~ 351 (874)
T PRK05729 272 VKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVV 351 (874)
T ss_pred eEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCce
Confidence 034566666666421 1113357999999999
Q ss_pred cEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCC---------
Q 006368 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--------- 272 (648)
Q Consensus 202 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~--------- 272 (648)
++.+.++|||++++++++++.+++++... ..+|++..+...+||++ ++|||||||+.||+|||.|.+++
T Consensus 352 i~~~~~~QWFi~~~~~~~~~~~~v~~~~i-~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~ 429 (874)
T PRK05729 352 IEPYLSDQWFVKMKPLAKPALEAVENGEI-KFVPERWEKTYFHWMEN-IQDWCISRQLWWGHRIPAWYDEDGEVYVGREE 429 (874)
T ss_pred EEEEecCcceEehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHhc-CccceeeeecccCCcccEEEeCCCcEEeCCcc
Confidence 99999999999999999999999975432 23688889999999986 99999999999999999754332
Q ss_pred -------------ceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC--
Q 006368 273 -------------KVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-- 334 (648)
Q Consensus 273 -------------~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~-- 334 (648)
.|++||||+.+.|++.+ +|+ .+|..||| .| +|++|+||++| |++++++.|..
T Consensus 430 ~~~~~~~~~~~~~DvlDtWfsS~l~~~~~l-gwp~~~~~~~~~~P--~d---~~~~G~Dii~~----W~a~~~~~~~~~~ 499 (874)
T PRK05729 430 PEAREKALLTQDEDVLDTWFSSALWPFSTL-GWPEKTEDLKRFYP--TS---VLVTGFDIIFF----WVARMIMMGLHFT 499 (874)
T ss_pred cccccccCeEeCCceecceecCCccHHHHh-CCCCCcHHHHhcCC--cc---cccccccccch----HHHHHHHHHHHhc
Confidence 35556777788887765 775 35888994 56 89999999997 66665554432
Q ss_pred cc-cCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 335 WT-LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 335 ~~-~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
.. |++.+++||++. .+|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++|+++.+... .+++++++|
T Consensus 500 ~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~--~~~~nkl~N 576 (874)
T PRK05729 500 GQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-KYGADALRFTLAALASPGRDIRFDEERVEGY--RNFANKLWN 576 (874)
T ss_pred CCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceeCHHHHHHH--HHHHHHHHH
Confidence 12 349999999998 799999999999999999999 7999999999998878899999999999876 569999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ 490 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~ 490 (648)
..+.+...+.+ ...+..+.. ......|++++..++.+++.+.++|++|+++.|++.+++++ ..+|.|++..+
T Consensus 577 ~~Rf~~~~~~~----~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k 650 (874)
T PRK05729 577 ASRFVLMNLEG----ADVGELPDP--EELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAK 650 (874)
T ss_pred HHHHHHHhccc----CCccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554433232 222222211 12356789999999999999999999999999999999998 57999999999
Q ss_pred hhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 491 FWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 491 pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
||.. . . ....++.++.++++.++.||+||||++|++||++|+-
T Consensus 651 ~~l~--~-~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 651 PVLQ--E-A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHhh--h-h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 9943 2 2 2456788899999999999999999999999999974
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-76 Score=695.68 Aligned_cols=498 Identities=18% Similarity=0.226 Sum_probs=404.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----CCCH--------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----NCSP-------- 87 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g~~~-------- 87 (648)
++++|+|++|||||||.+|||||++ ++.+|+++||+||+||+|+|++|+|+||.+++.+.++. |+++
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f 164 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMF-VTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEF 164 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHH-HHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHH
Confidence 5667999999999999999999998 56799999999999999999999999999998866543 6543
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc
Q 006368 88 ----KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 88 ----~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (648)
.++++++...+++++++||+++| ..+.|++|.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.+|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 165 TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 45668889999999999999887 467799999999999999999999999999999999999999999998862
Q ss_pred --------------------------cCCC--Ccc--------------------------ccC----------------
Q 006368 162 --------------------------TCPF--EGC--------------------------NYE---------------- 171 (648)
Q Consensus 162 --------------------------~cp~--~~c--------------------------~~~---------------- 171 (648)
|.|. +|| +-+
T Consensus 245 ~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG 324 (958)
T PLN02943 245 SEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTG 324 (958)
T ss_pred ccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCc
Confidence 1222 000 000
Q ss_pred ---------------------------CCCCccccccCCC--------------------CCccccCCCcCCCCCCCcEE
Q 006368 172 ---------------------------SARGDQCENCGKL--------------------LNATDLKDPKCKVCRNAPQI 204 (648)
Q Consensus 172 ---------------------------~~~g~~c~~cg~~--------------------l~~~el~~~~~~~~g~~~~~ 204 (648)
+..|...+.+|.. ..+.++..|+|++||++++.
T Consensus 325 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~ 404 (958)
T PLN02943 325 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 404 (958)
T ss_pred eEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEE
Confidence 2233333334432 11223457999999999999
Q ss_pred eeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC--------------
Q 006368 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF-------------- 270 (648)
Q Consensus 205 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~-------------- 270 (648)
+.++|||++++++++.+.+++++.+. ..+|.+..+...+||+ +++|||||||+.||+|||.|..
T Consensus 405 ~~~~QWFi~~~~l~~~~l~~v~~~~i-~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~ 482 (958)
T PLN02943 405 LVSKQWFVTMEPLAEKALKAVENGEL-TIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARS 482 (958)
T ss_pred EeccceeEEHHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceeccccCCCceEEecCc
Confidence 99999999999999999999975432 2357788888999998 6999999999999999997531
Q ss_pred --------------------CCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHH
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa 326 (648)
+.+|+||||||.+.|++.+ +|+ ++|+.||| .| +++.|+||++| |++
T Consensus 483 ~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~yP--~d---l~~~G~Dii~f----W~a 552 (958)
T PLN02943 483 AEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFYP--TT---VLETGHDILFF----WVA 552 (958)
T ss_pred HHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccCC--Ce---EEEEeehHHHH----HHH
Confidence 3589999999999999875 575 36888894 46 79999999975 888
Q ss_pred HhhhcCCCc--c-cCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 327 TLLGTGENW--T-LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 327 ~l~a~g~~~--~-~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.+++.|... . |++++++||+++ .+|+|||||+||+|+|.++++ .||+|++|||+++. +.++|++|+++.+.+
T Consensus 553 ~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~-~~~~d~~fs~~~l~~-- 628 (958)
T PLN02943 553 RMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-EFGTDALRFTLALG-TAGQDLNLSTERLTS-- 628 (958)
T ss_pred HHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-hcCChHHHHHHHhC-CCCCCccccHHHHHH--
Confidence 765555431 2 458999999996 799999999999999999998 79999999999975 458999999999987
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCC---------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPG---------QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLK 473 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~---------~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~ 473 (648)
+++++++|+|+.+++...+..... ..+++..+ .......|+++++.++.+++++.++|++|+|+.|++
T Consensus 629 ~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~ 705 (958)
T PLN02943 629 NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES---LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGR 705 (958)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc---ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 489999999988877654421000 01221111 012346789999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 474 TAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 474 ~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.+++++ ..+|.|++..+||...+++......+..++..+++.+..||+||||++|++||++|+.
T Consensus 706 ~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 706 EIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC
Confidence 999995 7899999999998543333334556778888999999999999999999999999973
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=629.45 Aligned_cols=316 Identities=48% Similarity=0.895 Sum_probs=290.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+++||+|+|||||.+||||+++. +.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++|+.+.+.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~-~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGT-VLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999995 66899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccC
Q 006368 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCG 182 (648)
Q Consensus 103 ~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg 182 (648)
++|||++|.|++|+++.|...++++|++|.++|++|++++.++||+.|++||+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999975
Q ss_pred CCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeecc-CC
Q 006368 183 KLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261 (648)
Q Consensus 183 ~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~-~W 261 (648)
++++++||||+|++|++.|++++++++. ..||+++++.+.+||+++++||||||++ .|
T Consensus 133 --------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~-~~~p~~~~~~~~~~l~~~l~d~~isR~~~~W 191 (319)
T cd00814 133 --------------------EWREEEHYFFRLSKFQDRLLEWLEKNPD-FIWPENARNEVLSWLKEGLKDLSITRDLFDW 191 (319)
T ss_pred --------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHhCCCcccCCCccCccc
Confidence 4678999999999999999999998764 2589999999999999999999999998 99
Q ss_pred CcccCCcCCCCceeeeeecccchHHHhccccchHHH--hhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc
Q 006368 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE--QWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK 339 (648)
Q Consensus 262 Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~--~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~ 339 (648)
|||+|.+ +++++||||||+++|+|++..+..... .||.. ....++||+|+||++||+++||||++++|. ++|+
T Consensus 192 Gipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~-~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~--~~~~ 266 (319)
T cd00814 192 GIPVPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD-GWPELVHFIGKDIIRFHAIYWPAMLLGAGL--PLPT 266 (319)
T ss_pred CeeCCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc-CCCceEEEEeechhhhhHHHHHHHHHhCCC--CCCc
Confidence 9999987 799999999999999998754432111 23332 223459999999999999999999999984 5889
Q ss_pred eEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 340 TISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 340 ~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
.+++|||++++|+|||||+||+|++.++++ .|++|++||||++..|.++|.||
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~-~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLE-RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999998 79999999999999999999987
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=691.84 Aligned_cols=493 Identities=20% Similarity=0.259 Sum_probs=404.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC------H----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS------P---- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~------~---- 87 (648)
.++++|+|++|||||||.+||||+++ ++.+||++||+||+||+|+|++|+|+||+||+.+|+++ |+. +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~-~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~ 111 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALN-KILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIE 111 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHH-HHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHH
Confidence 35677999999999999999999999 56799999999999999999999999999999999876 654 3
Q ss_pred ------HHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
++++.++.+.+++++++||++. +..+.|++|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 112 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev 191 (861)
T TIGR00392 112 EFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEV 191 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHH
Confidence 4788899999999999999966 57889999999999999999999999999999999999999999999888
Q ss_pred ccc-------CC------------------------------C--Ccccc----CC------------------------
Q 006368 160 EGT-------CP------------------------------F--EGCNY----ES------------------------ 172 (648)
Q Consensus 160 ~g~-------cp------------------------------~--~~c~~----~~------------------------ 172 (648)
+.. .| + +||.+ ++
T Consensus 192 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~ 271 (861)
T TIGR00392 192 EYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK 271 (861)
T ss_pred hcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH
Confidence 521 11 1 00000 00
Q ss_pred ----------------------------CCCccc------c---------------------------------------
Q 006368 173 ----------------------------ARGDQC------E--------------------------------------- 179 (648)
Q Consensus 173 ----------------------------~~g~~c------~--------------------------------------- 179 (648)
-.+... .
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~ 351 (861)
T TIGR00392 272 LYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVL 351 (861)
T ss_pred HHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcc
Confidence 000000 0
Q ss_pred ----ccCCCCC--c-------c-----------------------------ccCCCcCCCCCCCcEEeeccceeeechhh
Q 006368 180 ----NCGKLLN--A-------T-----------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPAL 217 (648)
Q Consensus 180 ----~cg~~l~--~-------~-----------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~ 217 (648)
..|.+.+ + . ....|+|+|||++++.+.++|||++++++
T Consensus 352 ~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~ 431 (861)
T TIGR00392 352 SPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDI 431 (861)
T ss_pred cccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHH
Confidence 0011000 0 0 01248999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------------------------
Q 006368 218 RNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------------------------- 270 (648)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------------------------- 270 (648)
+++++++++++.. .|....+++.+||+ +++|||||||+.||+|+|.+.+
T Consensus 432 k~~~l~~~~~i~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w 507 (861)
T TIGR00392 432 KDQMLEQIKKVNW---VPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAW 507 (861)
T ss_pred HHHHHHHhCCcEE---ECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccc
Confidence 9999999987653 47778888999999 4899999999999999997321
Q ss_pred ------------------------CCceeeeeecccchHHHhccccch---HHHhhcCCCCCcceEEEEeccccc--hhH
Q 006368 271 ------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVP--FHT 321 (648)
Q Consensus 271 ------------------------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~~~~~i~~~GkDi~~--fH~ 321 (648)
+.+|+||||||+++|++.. +|+. +|..||| .| +|++|+||++ ||+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~-~~~~~~~~f~~~~P--~d---~~i~G~Di~r~Wf~~ 581 (861)
T TIGR00392 508 FEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASI-HYPFENEKFKEVFP--AD---FILEGSDQTRGWFYS 581 (861)
T ss_pred cccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhc-CCCCCcchhhccCC--ce---EEEEecchhccHHHH
Confidence 2349999999999999875 4643 5888894 56 8999999998 899
Q ss_pred hHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHH
Q 006368 322 VMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQA 400 (648)
Q Consensus 322 i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~ 400 (648)
.+|+++++. |. .||+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++. +.++|++|+++.+..
T Consensus 582 ~~~~~~~~~-~~--~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~-~yGaDalR~~ll~~-~~~~D~~fs~~~l~~ 656 (861)
T TIGR00392 582 SLAIGTALF-GQ--APYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN-KYGADILRLYVASS-DPWEDLRFSDEILKQ 656 (861)
T ss_pred HHHHHHHHc-CC--CChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-HcCHHHHHHHHHhC-CCCCCceECHHHHHH
Confidence 999998764 43 4789999999998 599999999999999999999 79999999999987 889999999999976
Q ss_pred HhhHHHHHHHhHHHHHHH--HhhhCCCCCCCCC--CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 401 KSNNELLNNLGNFINRVL--SFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 401 ~~n~~l~~~l~N~~~R~~--~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
. ++.+.+.++|+++++. +.+.+ ++. ..+.. ......|++++..++.+.+.+.++|++|+++.|++.++
T Consensus 657 ~-~~~~~n~l~N~~~~~~~~~~l~~-----~~~~~~~~~~--~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~ 728 (861)
T TIGR00392 657 V-VEKYRKIRWNTYRFLLTYANLDK-----FDPLFNSVAV--EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQ 728 (861)
T ss_pred H-HHHHHHHHHHHHHHHHHHhcccc-----CCcccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4 4668999999999887 55443 221 11111 12346789999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHhhhh--hhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 477 SISSE--GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 477 ~l~~~--~N~yi~~~~p--w~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+++.. +|.|++..+| |...+.+..+ ++..++..+++.++.+|+||||++|++||++|+.
T Consensus 729 ~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~--~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~ 791 (861)
T TIGR00392 729 DFIVEELSNWYIRIIRDRLYCEAKDNDKR--AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG 791 (861)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccc
Confidence 99865 9999998876 8776543222 5566777889999999999999999999999975
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-75 Score=688.46 Aligned_cols=498 Identities=18% Similarity=0.266 Sum_probs=395.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~----------- 86 (648)
.++++|++++|||||||.|||||+++ ++.+|+++||+||+||+|.|++|+|+||+||+..++++ |+.
T Consensus 35 ~~~~~f~~~dgPPyanG~~HiGH~~~-~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~ 113 (1159)
T PLN02882 35 EGLPEYIFYDGPPFATGLPHYGHILA-GTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGID 113 (1159)
T ss_pred CCCCCEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHH
Confidence 35677999999999999999999999 56699999999999999999999999999999999644 653
Q ss_pred -----HHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 87 -----PKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 87 -----~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
|++++.+|...+++++++|| +++|++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.++
T Consensus 114 ~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~ 193 (1159)
T PLN02882 114 KYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEA 193 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhh
Confidence 56788899999999999999 56678999999999999999999999999999999999999999999997555
Q ss_pred c-------c----------------------cCCC--Ccc---------cc-----------------------------
Q 006368 160 E-------G----------------------TCPF--EGC---------NY----------------------------- 170 (648)
Q Consensus 160 ~-------g----------------------~cp~--~~c---------~~----------------------------- 170 (648)
+ + |.|+ ++| .|
T Consensus 194 ~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~ 273 (1159)
T PLN02882 194 GLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKS 273 (1159)
T ss_pred hhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcc
Confidence 2 0 2332 110 00
Q ss_pred ------------------------------------------C---------------------CCCC------------
Q 006368 171 ------------------------------------------E---------------------SARG------------ 175 (648)
Q Consensus 171 ------------------------------------------~---------------------~~~g------------ 175 (648)
. ++.|
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl 353 (1159)
T PLN02882 274 KKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGI 353 (1159)
T ss_pred cccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCC
Confidence 0 0000
Q ss_pred ---------------ccccc----------------------cCCCCCcccc--CCCcCCCCCCCcEEeeccceeeechh
Q 006368 176 ---------------DQCEN----------------------CGKLLNATDL--KDPKCKVCRNAPQIRDTNHLFLDLPA 216 (648)
Q Consensus 176 ---------------~~c~~----------------------cg~~l~~~el--~~~~~~~~g~~~~~~~~~~~f~~l~~ 216 (648)
...+. +|.++...++ ..|+|||||+|++++.++|||+++++
T Consensus 354 ~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~ 433 (1159)
T PLN02882 354 IEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEE 433 (1159)
T ss_pred CccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHH
Confidence 00000 0111111111 25999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcccccceeeeccCCCcccCCcCCC------------------------
Q 006368 217 LRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCITRDLKWGVPVPLERFK------------------------ 271 (648)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~------------------------ 271 (648)
+++++.+..++..+. |+++ .+++.+||++ ++||||||++.||+|+|.|.++
T Consensus 434 ~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~d 509 (1159)
T PLN02882 434 IKDRLLENNKQTYWV---PDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTD 509 (1159)
T ss_pred HHHHHHHhhCCcEEE---CCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhh
Confidence 999999977665432 5666 3688999987 8999999999999999975210
Q ss_pred -------------------------CceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 272 -------------------------EKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 272 -------------------------~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
..|++||||+.+...+. .+|| +.|..+| |+| +|+.|+||+++
T Consensus 510 lh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~-~~~p~e~~~~f~~~~--PaD---~i~eG~Dq~Rg--- 580 (1159)
T PLN02882 510 LHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAY-IHYPFENKELFEKNF--PAD---FVAEGLDQTRG--- 580 (1159)
T ss_pred ccccchhhhccccccCCchhceEecCceeeeeeccCccHHHH-cCCcccChhHhhccC--Cce---EEEEecchhhh---
Confidence 16899999987776654 3675 2467778 456 89999999997
Q ss_pred HHHHHhhhcC---CCcccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcC-CCCCCccccHHH
Q 006368 323 MFPSTLLGTG---ENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR-PEVSDTLFTWAD 397 (648)
Q Consensus 323 ~~pa~l~a~g---~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~-~~~~d~~fs~~~ 397 (648)
|+..++.++ .+.++|+++++|||++. +|+|||||+||+|+|.++++ +||+|+|||||++.. +++.|++|+++.
T Consensus 581 -Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~-~YGADaLR~~Ll~s~~~~~~d~~fs~~~ 658 (1159)
T PLN02882 581 -WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID-KYGADALRLYLINSPVVRAEPLRFKEEG 658 (1159)
T ss_pred -HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH-HhCcHHHHHHHHhCCcccCcCcccCHHH
Confidence 555444433 13468899999999996 89999999999999999999 799999999999743 247899999999
Q ss_pred HHHHhhHHHHHHHhH----HHHHHHHhhhCCCCCCCCCCCCCCC-C--CCChHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 006368 398 LQAKSNNELLNNLGN----FINRVLSFIAKPPGQGYGSIVPDAN-G--AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQ 470 (648)
Q Consensus 398 ~~~~~n~~l~~~l~N----~~~R~~~~~~k~~~~~~~~~~p~~~-~--~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~ 470 (648)
+.+..+ +..+++.| ++.++..+..+ ++++..|... . .....+|+++++.++.+.+.+.++|++|+++.
T Consensus 659 v~~~~~-~~l~kl~Na~rfl~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~ 733 (1159)
T PLN02882 659 VFGVVK-DVFLPWYNAYRFLVQNAKRLEVE----GGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733 (1159)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhhhhhhhc----cccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 887543 34444455 55554444333 3444444311 0 12356899999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 471 GLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 471 al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|++.|++++. .+|+||+..+||.+.+.+...+.++++++.++++.++.+|+||||++|++||++|+.
T Consensus 734 A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 734 VVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 9999999996 699999999999887655566788999999999999999999999999999999974
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-75 Score=685.90 Aligned_cols=497 Identities=21% Similarity=0.317 Sum_probs=395.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~----------- 86 (648)
.++++|+|++|||||||.|||||+++ ++.+|+++||+||+||+|.+++|+|+||+||+..++++ |++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~-~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~ 116 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLT-RTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIE 116 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHh-hHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHH
Confidence 46678999999999999999999999 45699999999999999999999999999999999875 654
Q ss_pred -----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 87 -----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 87 -----~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
|.+++.++.+.+++++++||++.| +.+.|++|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 117 ~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev 196 (975)
T PRK06039 117 KFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEV 196 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHH
Confidence 678999999999999999997664 6788999999999999999999999999999999999999999999988
Q ss_pred cc----------------------------cCCC--Ccc-------------------cc--------------------
Q 006368 160 EG----------------------------TCPF--EGC-------------------NY-------------------- 170 (648)
Q Consensus 160 ~g----------------------------~cp~--~~c-------------------~~-------------------- 170 (648)
++ |.|+ +|| .+
T Consensus 197 ~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~ 276 (975)
T PRK06039 197 AQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVET 276 (975)
T ss_pred hhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEee
Confidence 62 1121 111 00
Q ss_pred ---CC------------------------------CCCc----ccc----------------------ccCCCCCc-c--
Q 006368 171 ---ES------------------------------ARGD----QCE----------------------NCGKLLNA-T-- 188 (648)
Q Consensus 171 ---~~------------------------------~~g~----~c~----------------------~cg~~l~~-~-- 188 (648)
.+ ..|. .|+ .-|++.+. .
T Consensus 277 ~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~ 356 (975)
T PRK06039 277 FKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDY 356 (975)
T ss_pred ecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccc
Confidence 00 0000 000 00111000 0
Q ss_pred ----------------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHH
Q 006368 189 ----------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ 240 (648)
Q Consensus 189 ----------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (648)
....|+|+|||++++++.++|||++++++++++.+++++... .|+..++
T Consensus 357 ~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~---~P~~~~~ 433 (975)
T PRK06039 357 AGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINW---YPEHIKD 433 (975)
T ss_pred cCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEE---ECcccch
Confidence 113689999999999999999999999999999999977543 3566666
Q ss_pred -HHHHHHhcccccceeeeccCCCcccCCcCC------------------------------------------------C
Q 006368 241 -ATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------------------------------------K 271 (648)
Q Consensus 241 -~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------------------------------------~ 271 (648)
++.+||+. ++||||||++.||+|+|.|.+ +
T Consensus 434 ~~~~~wl~~-l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~ 512 (975)
T PRK06039 434 GRFGKWLEN-ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRV 512 (975)
T ss_pred hhHHHHHhc-CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEec
Confidence 78899985 999999999999999997421 1
Q ss_pred CceeeeeecccchHHHhccccch----HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcC---CCcccCceEEee
Q 006368 272 EKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTG---ENWTLMKTISVT 344 (648)
Q Consensus 272 ~~v~yVWfDa~~~yis~~~~~~~----~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g---~~~~~p~~~~~h 344 (648)
.+|+|||||+.+.|++.. +|+. .|..||| .| +++.|+||++| |...++.++ .+.++++++++|
T Consensus 513 ~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~P--ad---~~~~G~Di~r~----Wf~~l~~~~~~~~~~~pfk~v~~h 582 (975)
T PRK06039 513 PDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHFP--AD---FIVEGIDQTRG----WFYTLLALSTALFDRPPYKNVLVH 582 (975)
T ss_pred cccccceeecCCccHHHh-CCcccChhhhhccCC--ce---EEEechhhHhh----HHHHHHHHHHHhcCCCcccEEEEe
Confidence 289999999999998865 6642 4788894 56 89999999986 444444322 112467999999
Q ss_pred ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 345 EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 345 g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
||++ .+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++||++.+.+..|+.+ ++++|+++++.....-
T Consensus 583 G~Vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~ 660 (975)
T PRK06039 583 GHVLDEDGQKMSKSLGNYVDPFEVFD-KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANL 660 (975)
T ss_pred eeEECCCCCCcCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhh
Confidence 9998 599999999999999999999 799999999999988778999999999777676655 9999999887643221
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHhh--hhhhhccCChh
Q 006368 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYLQES--QFWKLYKEDQP 500 (648)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~-~N~yi~~~--~pw~l~k~~~~ 500 (648)
. .++..............|++++..++.+++.+.++|++|+++.|++.+++|++. +|.|++.. +||...+ +.
T Consensus 661 -~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~-~~- 735 (975)
T PRK06039 661 -D--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEED-DP- 735 (975)
T ss_pred -c--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-cH-
Confidence 0 111110000012245689999999999999999999999999999999999965 68999876 4687643 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 501 SCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 501 ~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
....+..++..+++.++.+|+||||++|++||+.|+.
T Consensus 736 ~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 736 DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 2334667788899999999999999999999999984
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-75 Score=681.53 Aligned_cols=492 Identities=19% Similarity=0.268 Sum_probs=392.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc------CCCHH----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED------NCSPK---- 88 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~------g~~~~---- 88 (648)
.++++|+|++|||||||.+|||||++ ++.+|+++||+||+|++|.|++|+|+||+||+.+|+++ ++++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~-~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~ 124 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALN-KILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRK 124 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHH-HHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHH
Confidence 46678999999999999999999999 67799999999999999999999999999999999886 66666
Q ss_pred ---HHHHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc--
Q 006368 89 ---EICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-- 161 (648)
Q Consensus 89 ---e~~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-- 161 (648)
++++++.+.++++|++||+ ++|.+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|++.|+|.+|+.
T Consensus 125 ~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~ 204 (912)
T PRK05743 125 KCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD 204 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence 4888889999999999999 556889999999999999999999999999999999999999999999998861
Q ss_pred -cC-----------------------------CC--Ccc-------------------cc--------------------
Q 006368 162 -TC-----------------------------PF--EGC-------------------NY-------------------- 170 (648)
Q Consensus 162 -~c-----------------------------p~--~~c-------------------~~-------------------- 170 (648)
.+ |+ +|| .+
T Consensus 205 ~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 284 (912)
T PRK05743 205 KTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYE 284 (912)
T ss_pred ccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceE
Confidence 11 11 000 00
Q ss_pred --------C---------------------------------------------------------CCCCccccccCCC-
Q 006368 171 --------E---------------------------------------------------------SARGDQCENCGKL- 184 (648)
Q Consensus 171 --------~---------------------------------------------------------~~~g~~c~~cg~~- 184 (648)
+ +..|...+.+|.+
T Consensus 285 ~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 364 (912)
T PRK05743 285 VLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFA 364 (912)
T ss_pred EEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccC
Confidence 0 0011010011110
Q ss_pred ---C------------------Ccc--ccCCCcCCCCCCCcEEeeccceeeechh--hHHHHHHHHHcCCCCCCCChHHH
Q 006368 185 ---L------------------NAT--DLKDPKCKVCRNAPQIRDTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAI 239 (648)
Q Consensus 185 ---l------------------~~~--el~~~~~~~~g~~~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~ 239 (648)
+ ... ....|+|||||++++++.++|||+++++ +++.+.+.+++.... |+..+
T Consensus 365 Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~---P~~~~ 441 (912)
T PRK05743 365 GLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWI---PAWGK 441 (912)
T ss_pred CcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEE---ChHHH
Confidence 0 000 0136999999999999999999999998 999999999876543 66778
Q ss_pred HHHHHHHhcccccceeeeccCCCcccCCcCCC--------------------CceeeeeecccchHHHh--ccccc----
Q 006368 240 QATHAWLKEGLKVRCITRDLKWGVPVPLERFK--------------------EKVFYVWFDAPIGYVSI--TSCYT---- 293 (648)
Q Consensus 240 ~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~--------------------~~v~yVWfDa~~~yis~--~~~~~---- 293 (648)
+++.+||+. ++|||||||+.||+|||.+.++ ++.+++|||+...++.. ...+.
T Consensus 442 ~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~D 520 (912)
T PRK05743 442 NRIESMVEN-RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETD 520 (912)
T ss_pred HHHHHHHhc-CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCc
Confidence 889999987 8999999999999999985321 23456777766555432 00110
Q ss_pred --h---------------HHHhhcCCCCCcceEEEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-cCCcc
Q 006368 294 --N---------------EWEQWWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGK 353 (648)
Q Consensus 294 --~---------------~~~~~w~~p~~~~~i~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~K 353 (648)
+ ....|| |.| +|+.|+||++ ||+.+|+++++ .|. +||+++++|||++ .+|+|
T Consensus 521 vlDvWfdSg~s~~~~~~~~~~~~~--P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~--~P~k~vl~HG~vld~~G~K 592 (912)
T PRK05743 521 ILDVWFDSGSSHAAVLEQRPELGY--PAD---LYLEGSDQHRGWFQSSLLTSVAT-RGK--APYKQVLTHGFTVDGKGRK 592 (912)
T ss_pred hhhhhhhhCCCHHHHhcCccccCC--Cce---EEEecccccchHHHHHHHHHHHh-cCC--CccceeEEeeeEECCCCCC
Confidence 0 012356 456 8999999996 88999999998 565 4889999999998 59999
Q ss_pred ccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCC---
Q 006368 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--- 430 (648)
Q Consensus 354 MSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~--- 430 (648)
||||+||+|+|.++++ .||+|+||||+++ +++++|++|+++.+.+. ++..++|+|.++.+++.+.. ++
T Consensus 593 MSKSlGNvIdP~~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~-----~~~~~ 663 (912)
T PRK05743 593 MSKSLGNVIDPQDVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLND-----FDPAK 663 (912)
T ss_pred CCCCCCCcCCHHHHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCccc
Confidence 9999999999999998 7999999999997 77899999999998874 67889999998887765443 22
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhhhh--hccCChhhHHHHH
Q 006368 431 SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWK--LYKEDQPSCSIVM 506 (648)
Q Consensus 431 ~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~pw~--l~k~~~~~~~~vl 506 (648)
+.+|. ......|++++..++.+++.+.++|++|+|+.|++.+++++ ..+|.|++..+||. ..+++. ....+.
T Consensus 664 ~~~~~---~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~-~r~~~~ 739 (912)
T PRK05743 664 DAVPY---EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSL-ARRSAQ 739 (912)
T ss_pred ccCCc---hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcH-HHHHHH
Confidence 11221 12356799999999999999999999999999999999999 57899999999963 332222 223344
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 507 RTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 507 ~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
.++..++..+..+|+||||++|++||++|+
T Consensus 740 ~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 740 TALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 556677788899999999999999999996
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=675.65 Aligned_cols=500 Identities=18% Similarity=0.234 Sum_probs=401.4
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH-----HcCCCH------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM-----EDNCSP------ 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~-----~~g~~~------ 87 (648)
.++++|+|++|||||||.+|||||++ ++.+||++||+||+|++|+|++|+|+||.+++...+ +.|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~-~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e 135 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALT-GAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGRE 135 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHH-HHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHH
Confidence 35678999999999999999999999 567999999999999999999999999999966543 335443
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.++++++...+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++.|+|.+|
T Consensus 136 ~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV 215 (995)
T PTZ00419 136 EFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhc
Confidence 46788999999999999999987 7889999999999999999999999999999999999999999999887
Q ss_pred c---------------------c---------------------cCCC--Cccc--------------------------
Q 006368 160 E---------------------G---------------------TCPF--EGCN-------------------------- 169 (648)
Q Consensus 160 ~---------------------g---------------------~cp~--~~c~-------------------------- 169 (648)
+ | |.|. +||.
T Consensus 216 e~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~ 295 (995)
T PTZ00419 216 EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPD 295 (995)
T ss_pred ccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCC
Confidence 5 2 1121 0100
Q ss_pred ----------c-CCCCCc---------------------------------cccccCCCCC-------------------
Q 006368 170 ----------Y-ESARGD---------------------------------QCENCGKLLN------------------- 186 (648)
Q Consensus 170 ----------~-~~~~g~---------------------------------~c~~cg~~l~------------------- 186 (648)
+ +...|. ..+++|.+--
T Consensus 296 ~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~ 375 (995)
T PTZ00419 296 RKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGL 375 (995)
T ss_pred CEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCC
Confidence 0 000111 1111111100
Q ss_pred -----ccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 187 -----ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 187 -----~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
+.....|+|+|||++++.+.++|||++++.+++++.+++++.+.. ..|+...++..+||+. ++|||||||+.|
T Consensus 376 l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~-~~P~~~~~~~~~wl~~-l~DWcISRQr~W 453 (995)
T PTZ00419 376 LRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK-IIPSSHENVWYHWLEN-IQDWCISRQLWW 453 (995)
T ss_pred EEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHHHhc-cccceeeeeccc
Confidence 001235899999999999999999999999999999999765432 2477788889999986 999999999999
Q ss_pred CcccCCcCC-------------------------------------------CCceeeeeecccchHHHhccccch---H
Q 006368 262 GVPVPLERF-------------------------------------------KEKVFYVWFDAPIGYVSITSCYTN---E 295 (648)
Q Consensus 262 Gi~vP~~~~-------------------------------------------~~~v~yVWfDa~~~yis~~~~~~~---~ 295 (648)
|+|||.|.+ +.+|+|||||+.+.|++.+ +||. +
T Consensus 454 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~-g~p~~~~~ 532 (995)
T PTZ00419 454 GHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTL-GWPDQTDD 532 (995)
T ss_pred CceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHh-CCCCChHH
Confidence 999998511 2389999999999998765 7753 5
Q ss_pred HHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC---cccCceEEeeceee-cCCccccccCCcccChhhhhhc-
Q 006368 296 WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDT- 370 (648)
Q Consensus 296 ~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~---~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~- 370 (648)
|..||| .| +++.|+||++| |++.++.+|.. -.|++.+++||++. .+|+|||||+||||+|.++++.
T Consensus 533 ~~~~~P--~d---~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~ 603 (995)
T PTZ00419 533 LQRFFP--TS---LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGI 603 (995)
T ss_pred HhhcCC--Cc---EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhccc
Confidence 788884 56 89999999985 76665554431 12348999999997 5999999999999999999871
Q ss_pred -----------------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHH
Q 006368 371 -----------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFIN 415 (648)
Q Consensus 371 -----------------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 415 (648)
.||+|+|||||++..+.+.|++|+.+.+... .+++++++|+++
T Consensus 604 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~--~~f~nklwN~~r 681 (995)
T PTZ00419 604 SLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGY--RHFCNKLWNAVK 681 (995)
T ss_pred chhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHH--HHHHHHHHHHHH
Confidence 5999999999998888889999999998865 789999999999
Q ss_pred HHHHhhhCCCCCCCCCCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhh
Q 006368 416 RVLSFIAKPPGQGYGSIVPD----ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQES 489 (648)
Q Consensus 416 R~~~~~~k~~~~~~~~~~p~----~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~ 489 (648)
|++..+.. ...+..+. .........|++++..++.+++.+.++|++|+|+.|++.+++|+ ..+|.||+..
T Consensus 682 f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~ 757 (995)
T PTZ00419 682 FALMKLLK----DFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELI 757 (995)
T ss_pred HHHhcccc----cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 99877654 11111000 00012345799999999999999999999999999999999964 6799999999
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 490 QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 490 ~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+||.....+......+..++.++++.+..||+||||++|++||+.|+.
T Consensus 758 K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 758 KPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 999732233344556778888999999999999999999999999973
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=618.23 Aligned_cols=326 Identities=20% Similarity=0.296 Sum_probs=293.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------CCCH-----
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------NCSP----- 87 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------g~~~----- 87 (648)
++|+||+|||||||.|||||+++ ++.+||++||+|++|++|+|++|+|+||+||+..|+++ +++|
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALN-NTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 36999999999999999999998 68899999999999999999999999999999999875 3443
Q ss_pred --HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 88 --KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 88 --~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+++++++++.+++++++|||++| .|++|++|+|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 46899999999999999999987 8999999999999999999999999999999999999999999998643
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
|++||++++.+.++||||+|++|+++|++++++++.. .+|++.++++.
T Consensus 156 -------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~ 203 (382)
T cd00817 156 -------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIK-FVPERMEKRYE 203 (382)
T ss_pred -------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcE-EEChHHHHHHH
Confidence 6778999999999999999999999999999986431 35888999999
Q ss_pred HHHhcccccceeeeccCCCcccCCcCC----------------------------------CCceeeeeecccchHHHhc
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------KEKVFYVWFDAPIGYVSIT 289 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~----------------------------------~~~v~yVWfDa~~~yis~~ 289 (648)
+||++ +.||||||++.||||+|.+.+ +++|+||||||+++|++.+
T Consensus 204 ~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~ 282 (382)
T cd00817 204 NWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282 (382)
T ss_pred HHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHh
Confidence 99998 999999999999999997432 3799999999999999976
Q ss_pred cccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChh
Q 006368 290 SCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGN 365 (648)
Q Consensus 290 ~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~ 365 (648)
+|+ ..|+.||| +| +|++|+||++||.+++.++.+++... .+...+++||+++ .+|+|||||+||+|++.
T Consensus 283 -~~~~~~~~~~~~~p--~d---~~~~G~D~~~~h~~~~l~~~~~~~g~-~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~ 355 (382)
T cd00817 283 -GWPEETKDLKKFYP--TS---LLVTGHDIIFFWVARMIMRGLKLTGK-LPFKEVYLHGLVRDEDGRKMSKSLGNVIDPL 355 (382)
T ss_pred -CCCCcchhHhhcCC--CC---eeeeecCcCchHHHHHHHHHHHhhCC-CchHHeEeeeeEECCCCCCccccCCCCCCHH
Confidence 454 35889995 46 89999999999999998888776432 2348999999998 89999999999999999
Q ss_pred hhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 366 ~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
|+++ .||+|++|||+++..+.++|.+|
T Consensus 356 dll~-~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 356 DVID-GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHH-hcCcHHHHHHHHhCCCccCCCCC
Confidence 9999 79999999999998888999887
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=661.53 Aligned_cols=491 Identities=19% Similarity=0.263 Sum_probs=393.4
Q ss_pred CCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----
Q 006368 9 PAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---- 83 (648)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---- 83 (648)
|++...|.+.. ++++|+||+|+||+||.+||||+++ ++.+|+++||+||+|++|+|.+|+|+||+||+..|++.
T Consensus 11 W~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~-~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~ 89 (938)
T TIGR00395 11 WEEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRT-FTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRD 89 (938)
T ss_pred HHhCCCcccCCCCCCceEEecCCCCCCCCcccchhhh-hhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhh
Confidence 34455555532 4678999999999999999999998 67799999999999999999999999999999988772
Q ss_pred -----------C---------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEce
Q 006368 84 -----------N---------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141 (648)
Q Consensus 84 -----------g---------~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~ 141 (648)
+ .+|.++++++...+++++++||+++| .-+.|++|.|.+.|++.|.+|+++|+||++.
T Consensus 90 ~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~ 169 (938)
T TIGR00395 90 ELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGE 169 (938)
T ss_pred hhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCC
Confidence 1 35688889999999999999999988 3557889999999999999999999999999
Q ss_pred EeeeeccCcCcccccccccc---------------------------cCCC-----------Cccc--------------
Q 006368 142 MQQPYCDTCKRFLADRLVEG---------------------------TCPF-----------EGCN-------------- 169 (648)
Q Consensus 142 ~~~~y~~~~~~~l~d~~v~g---------------------------~cp~-----------~~c~-------------- 169 (648)
+.+.||+.|++.++|.++.. |.|. |...
T Consensus 170 ~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s 249 (938)
T TIGR00395 170 HPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITS 249 (938)
T ss_pred eeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEe
Confidence 99999999999999987641 1121 0000
Q ss_pred --------c-------------C------------------------------------------------C--------
Q 006368 170 --------Y-------------E------------------------------------------------S-------- 172 (648)
Q Consensus 170 --------~-------------~------------------------------------------------~-------- 172 (648)
+ . +
T Consensus 250 ~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~ 329 (938)
T TIGR00395 250 KEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYL 329 (938)
T ss_pred HHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhc
Confidence 0 0 0
Q ss_pred ------------------CCCcc-----ccc-------------------------cCCCCCc-----------------
Q 006368 173 ------------------ARGDQ-----CEN-------------------------CGKLLNA----------------- 187 (648)
Q Consensus 173 ------------------~~g~~-----c~~-------------------------cg~~l~~----------------- 187 (648)
.+|+. |+. -|.+...
T Consensus 330 gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~ 409 (938)
T TIGR00395 330 GIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVK 409 (938)
T ss_pred CCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHH
Confidence 00100 000 0111100
Q ss_pred ------------ccc-CCCcCCCCCCCcEEe-eccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccc
Q 006368 188 ------------TDL-KDPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 188 ------------~el-~~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
.++ ..|+|+|||++++++ .++|||++++ .+++.+.++++++.. +|++.++.+.+||+. ++
T Consensus 410 ~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~---~P~~~~~~~~~~l~~-l~ 485 (938)
T TIGR00395 410 ADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRI---IPEEVKNAFEGKIDW-LK 485 (938)
T ss_pred HHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEE---eCHHHHHHHHHHHhh-hh
Confidence 012 347899999999987 9999999999 599999999987653 588888899999985 99
Q ss_pred cceeeeccCCCcccCCcC------CCCceeeeeecccchHHHhcc------------------------ccc--------
Q 006368 252 VRCITRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSITS------------------------CYT-------- 293 (648)
Q Consensus 252 d~~IsR~~~WGi~vP~~~------~~~~v~yVWfDa~~~yis~~~------------------------~~~-------- 293 (648)
||||||++.||+|+|.+. .+++++||||+++.+|++... +++
T Consensus 486 DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~ 565 (938)
T TIGR00395 486 DWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLR 565 (938)
T ss_pred hcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHH
Confidence 999999999999999632 236899999999999975421 011
Q ss_pred hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC-cccCceEEeeceeecCCccccccCCcccChhhhhhcCC
Q 006368 294 NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNI 372 (648)
Q Consensus 294 ~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~-~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~ 372 (648)
.+|..|| |.| +|++|+||++||+++| .+++.+..+ -+.|+++++||||+.+|+|||||+||+|+|.++++ .|
T Consensus 566 ~ef~~~y--P~D---~~~~GkDii~~H~~~~-i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~-~y 638 (938)
T TIGR00395 566 REFEYWY--PLD---WRISGKDLIPNHLTFY-IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVE-KF 638 (938)
T ss_pred HHHhhcC--Cce---EEEEeeccccchHHHH-HHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHH-Hc
Confidence 3577788 456 8999999999999999 556655433 12569999999999999999999999999999999 79
Q ss_pred CchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 006368 373 PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKV 452 (648)
Q Consensus 373 ~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l 452 (648)
|+|++||||++.++.++|++|+++.+.++.|. .++++|++.|+..... +..+ ......|+++++.+
T Consensus 639 GaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~~--------~~~~----~~~~~~D~wlls~l 704 (938)
T TIGR00395 639 GADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKESN--------LETG----EETSFIDRWLESRM 704 (938)
T ss_pred ChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhcc--------cCCC----ccCChHHHHHHHHH
Confidence 99999999999888899999999999988654 7799999988765321 1110 11245689999999
Q ss_pred HHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 006368 453 GKYVEQYLEAMEKVKLKQGL-KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEV 531 (648)
Q Consensus 453 ~~~~~~v~~a~d~~~~~~al-~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i 531 (648)
+.+.+.+.++|++|+++.|+ ..+++++..+|.|+...+ .+.. .++.++++.+++||+||||++|++|
T Consensus 705 ~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~---------~~~~---~~l~~~l~~~~~LLaP~~P~~aEei 772 (938)
T TIGR00395 705 NAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGG---------VNHK---DVLARYLETWIKLLAPFAPHFAEEM 772 (938)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCc---------chHH---HHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999 678899999999986521 1122 3567899999999999999999999
Q ss_pred HHHhCC
Q 006368 532 NKQLNL 537 (648)
Q Consensus 532 ~~~L~~ 537 (648)
|++||.
T Consensus 773 w~~Lg~ 778 (938)
T TIGR00395 773 WEEVGN 778 (938)
T ss_pred HHHcCC
Confidence 999984
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-72 Score=656.66 Aligned_cols=493 Identities=18% Similarity=0.214 Sum_probs=389.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcC----CC--------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN----CS-------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g----~~-------- 86 (648)
.++++|+|++|||||||.+|||||+| ++..||++||+||+||+|.|++|+|+||+||+.+++++. ..
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln-~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~ 129 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALN-KILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAE 129 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHH-HHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHH
Confidence 36678999999999999999999999 566999999999999999999999999999999887663 32
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 87 ----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 87 ----~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
+.++++++.+.++++|++||++.| +.+.|++|.|.+.++++|.+|+++|+||++..+++||+.|++.|+|.+|+
T Consensus 130 f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Eve 209 (961)
T PRK13804 130 FRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIE 209 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcc
Confidence 345778888899999999999864 77889999999999999999999999999999999999999999997765
Q ss_pred c-------------------------------cCCC--Ccc-----------------------------c---------
Q 006368 161 G-------------------------------TCPF--EGC-----------------------------N--------- 169 (648)
Q Consensus 161 g-------------------------------~cp~--~~c-----------------------------~--------- 169 (648)
. |.|+ +|| .
T Consensus 210 y~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~ 289 (961)
T PRK13804 210 YHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAE 289 (961)
T ss_pred cccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHH
Confidence 1 1111 010 0
Q ss_pred ----------cC-----------------CCCCc-----c--------------------cc-----------ccC----
Q 006368 170 ----------YE-----------------SARGD-----Q--------------------CE-----------NCG---- 182 (648)
Q Consensus 170 ----------~~-----------------~~~g~-----~--------------------c~-----------~cg---- 182 (648)
++ .-.+. . |+ .-|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~ 369 (961)
T PRK13804 290 SVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEI 369 (961)
T ss_pred HHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcc
Confidence 00 00000 0 00 000
Q ss_pred --------CCCC--cc-------------------------------------ccCCCcCCCCCCCcEEeeccceeeech
Q 006368 183 --------KLLN--AT-------------------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLP 215 (648)
Q Consensus 183 --------~~l~--~~-------------------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~ 215 (648)
++.+ +. ....|+|+|||+|++.+.++|||++++
T Consensus 370 ~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~ 449 (961)
T PRK13804 370 PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMD 449 (961)
T ss_pred cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcC
Confidence 0000 00 014689999999999999999999999
Q ss_pred h-------hHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC------------------
Q 006368 216 A-------LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------ 270 (648)
Q Consensus 216 ~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------ 270 (648)
. +++.+.+.+++.... |+...+++.+||+. ++|||||||+.||+|+|.+.+
T Consensus 450 ~~~~~~~~~k~~al~~i~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~ 525 (961)
T PRK13804 450 KDLGDGTTLRSRALDAIDKTRFV---PAAGQNRLYNMIED-RPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADA 525 (961)
T ss_pred CcccchHHHHHHHHHHHhccEEE---CHHHHHHHHHHHhc-CccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHH
Confidence 8 999999999877643 66778889999986 799999999999999998310
Q ss_pred ------------------------------CCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccc--
Q 006368 271 ------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP-- 318 (648)
Q Consensus 271 ------------------------------~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~-- 318 (648)
+..|++||||+.+...... ....++ +| |+| +|+.|+||++
T Consensus 526 ~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~--PaD---~~~eG~Di~rgW 597 (961)
T PRK13804 526 FEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KW--PAD---LYLEGSDQHRGW 597 (961)
T ss_pred HHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CC--Cce---EEEEEcccccHH
Confidence 1358889999865443221 122222 46 556 8999999996
Q ss_pred hhHhHHHHHhhhcCC-CcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHH
Q 006368 319 FHTVMFPSTLLGTGE-NWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396 (648)
Q Consensus 319 fH~i~~pa~l~a~g~-~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~ 396 (648)
||+. +|++.+. ..+||+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++ .++++|++||++
T Consensus 598 F~s~----ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls-~~~~~D~~fs~~ 671 (961)
T PRK13804 598 FNSS----LLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVAS-VDYSDDQRIGKE 671 (961)
T ss_pred HHHH----HHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHh-CCCCCCcccCHH
Confidence 8884 4444432 124679999999998 499999999999999999998 7999999999997 678899999999
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 397 DLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 397 ~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
.+... +++.++|+|+++++++++.+ ++..............|++++..++.+++.+.++|++|+|++|++.++
T Consensus 672 ~l~~~--~~~~~kL~N~~rf~l~nl~~-----~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~ 744 (961)
T PRK13804 672 ILKQV--SETYRKLRNTLRWLLGNLAH-----FDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALV 744 (961)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcccc-----CCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 98775 78899999999988887765 322110000123456789999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 477 SIS--SEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 477 ~l~--~~~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+++ ..+|.|++..+||..... +......+..++..+++.++.+|+||||++|++||++|+.
T Consensus 745 ~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 745 NFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 998 458999999999854321 2233445667777889999999999999999999999983
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=648.99 Aligned_cols=490 Identities=17% Similarity=0.264 Sum_probs=389.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCCHHHH---
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCSPKEI--- 90 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~~~e~--- 90 (648)
+++|+|++|||||||.+|||||+|. +.+|+++||+||+|++|.|++|+|+||.||+.+++++ +++|.+|
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~-~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~ 109 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNK-ILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAK 109 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-HHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHH
Confidence 4569999999999999999999995 5699999999999999999999999999999998543 3455444
Q ss_pred ----HHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccccc--
Q 006368 91 ----CDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT-- 162 (648)
Q Consensus 91 ----~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~-- 162 (648)
++++...+++.|++||+ ++|..++|++|.|...++++|.+|+++|+||++..+++||++|++.|+|.+|+..
T Consensus 110 c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~ 189 (974)
T PLN02843 110 AAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEG 189 (974)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCC
Confidence 66777788999999999 5568889999999999999999999999999999999999999999999877520
Q ss_pred -------------------------------------CCC-----------Cc-------cc------------------
Q 006368 163 -------------------------------------CPF-----------EG-------CN------------------ 169 (648)
Q Consensus 163 -------------------------------------cp~-----------~~-------c~------------------ 169 (648)
.|+ |. ++
T Consensus 190 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~ 269 (974)
T PLN02843 190 HVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPG 269 (974)
T ss_pred ccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccc
Confidence 010 00 00
Q ss_pred -------------c-----------------------C------------------------------------------
Q 006368 170 -------------Y-----------------------E------------------------------------------ 171 (648)
Q Consensus 170 -------------~-----------------------~------------------------------------------ 171 (648)
+ .
T Consensus 270 ~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~ 349 (974)
T PLN02843 270 NVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQ 349 (974)
T ss_pred cccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCH
Confidence 0 0
Q ss_pred -----------------CCCCccccccCC-----CC-Ccc-------------------ccCCCcCCCCCCCcEEeeccc
Q 006368 172 -----------------SARGDQCENCGK-----LL-NAT-------------------DLKDPKCKVCRNAPQIRDTNH 209 (648)
Q Consensus 172 -----------------~~~g~~c~~cg~-----~l-~~~-------------------el~~~~~~~~g~~~~~~~~~~ 209 (648)
+..|...+.+|. .+ +.. ....|+||||++|++.+.++|
T Consensus 350 ~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~Q 429 (974)
T PLN02843 350 EDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQ 429 (974)
T ss_pred HHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCc
Confidence 111111111111 01 110 113699999999999999999
Q ss_pred eeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC-------------------
Q 006368 210 LFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------- 270 (648)
Q Consensus 210 ~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------- 270 (648)
||+++..+++.+.+.++++... |+...+++.+||+. ++|||||||+.||+|+|.+..
T Consensus 430 WFi~~~~~k~~al~~~~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~ 505 (974)
T PLN02843 430 WFASVEGFRQAALDAIDKVKWI---PAQGENRIRAMVSG-RSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSI 505 (974)
T ss_pred eeEeCHHHHHHHHHHHhccEEE---ChHHHHHHHHHHhc-CcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHH
Confidence 9999999999999999887654 55667888999987 899999999999999994310
Q ss_pred -------------------------------CCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccc-
Q 006368 271 -------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP- 318 (648)
Q Consensus 271 -------------------------------~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~- 318 (648)
+..|++||||+.+.+.+.. +.. ...+| |.| +|+.|+||++
T Consensus 506 ~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~-~~~--~~~~~--PaD---l~~eG~Di~rg 577 (974)
T PLN02843 506 VAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL-GSR--EGLSY--PAD---LYLEGSDQHRG 577 (974)
T ss_pred HHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh-ccc--cccCC--Cce---eeeeeccccch
Confidence 1268889999988765543 211 22357 456 8999999998
Q ss_pred -hhHhHHHHHhhhcCCCcccCceEEeeceeec-CCccccccCCcccChhhhhhc--------CCCchhHHHHHhhcCCCC
Q 006368 319 -FHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDT--------NIPVEVWRYYLLTNRPEV 388 (648)
Q Consensus 319 -fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~--------~~~~d~lR~~ll~~~~~~ 388 (648)
||+.+|+++. ..|. +|++++++|||+.. +|+|||||+||||+|.++++. .||+|+||||+++ ..++
T Consensus 578 Wf~s~l~~~~~-~~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~ 653 (974)
T PLN02843 578 WFQSSLLTSVA-TKGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYT 653 (974)
T ss_pred HHHHHHHHHHH-hcCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccC
Confidence 8999999874 3454 37799999999974 899999999999999999972 4999999999997 6678
Q ss_pred CCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 006368 389 SDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (648)
Q Consensus 389 ~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~--~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~ 466 (648)
+|++|+++.+.+. ++..++|.|.++++++.+.. ++ ..++. .....+|+++++.++.+.+.+.++|++|
T Consensus 654 ~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~-----~~~~~~~~~---~~~~~~D~wiLskL~~li~~v~~aye~y 723 (974)
T PLN02843 654 GDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHD-----WKPDNAVPY---EDLPSIDKYALFQLENVVNEIEESYDNY 723 (974)
T ss_pred CCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998876 57788899999988766543 22 11111 1234679999999999999999999999
Q ss_pred cHHHHHHHHHHH--HHHHHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 467 KLKQGLKTAMSI--SSEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 467 ~~~~al~~i~~l--~~~~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+|++|++.++++ ...+|.||+..+||...+. +......+..++..++..+.++|+||||++|++||++|+.
T Consensus 724 ~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 724 QFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccc
Confidence 999999999988 5689999999999987542 2222233444556677888999999999999999999985
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-71 Score=615.27 Aligned_cols=507 Identities=20% Similarity=0.266 Sum_probs=410.3
Q ss_pred CCCCCCCCCCCCC--CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---
Q 006368 9 PAAPPPKLPIPGK--RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (648)
Q Consensus 9 ~~~~~~~~~~~~~--~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~--- 83 (648)
|.++..|.|..+. ++|.|.+|||||+|.+|||||++.+ ..|+++||.||+||+|+|+.|+|++|.+++...+++
T Consensus 18 W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~t-l~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~ 96 (877)
T COG0525 18 WEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYT-LQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAA 96 (877)
T ss_pred HHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHH-HHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHH
Confidence 4456678886443 6699999999999999999999955 599999999999999999999999999998887664
Q ss_pred -CCC------------HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeecc
Q 006368 84 -NCS------------PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (648)
Q Consensus 84 -g~~------------~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 148 (648)
|++ +.|+.+++...+++++++||+++|. ...|+||.+.++|++.|.+|+++|+||++++.+.|||
T Consensus 97 ~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP 176 (877)
T COG0525 97 EGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCP 176 (877)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCC
Confidence 543 3467778889999999999999873 4559999999999999999999999999999999999
Q ss_pred CcCcccccccccc-------------------------cCCC--Cc-------------------------ccc------
Q 006368 149 TCKRFLADRLVEG-------------------------TCPF--EG-------------------------CNY------ 170 (648)
Q Consensus 149 ~~~~~l~d~~v~g-------------------------~cp~--~~-------------------------c~~------ 170 (648)
.|+|.++|.+|+. |-|. .| ++-
T Consensus 177 ~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIia 256 (877)
T COG0525 177 KCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIA 256 (877)
T ss_pred ccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeec
Confidence 9999999988862 2232 01 110
Q ss_pred ----C---------------------------------CCCCccccccC-CC--CC----------------------cc
Q 006368 171 ----E---------------------------------SARGDQCENCG-KL--LN----------------------AT 188 (648)
Q Consensus 171 ----~---------------------------------~~~g~~c~~cg-~~--l~----------------------~~ 188 (648)
+ +..|..-++|+ .. ++ +.
T Consensus 257 D~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~ 336 (877)
T COG0525 257 DEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPH 336 (877)
T ss_pred CcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeec
Confidence 0 22333333443 21 00 01
Q ss_pred ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc
Q 006368 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (648)
Q Consensus 189 el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~ 268 (648)
.+.-|+|.|||++++...++|||+++..+++.+.+..+++.. ...|++..+...+|+++ ++|||||||+.||.++|.|
T Consensus 337 ~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i-~f~P~~~~~~~~~W~~~-i~DWcISRQlwwGh~IPvW 414 (877)
T COG0525 337 KHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKI-KFVPERMEKRYEDWMEN-IRDWCISRQLWWGHRIPVW 414 (877)
T ss_pred cccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCc-eEecHHHHHHHHHHHhh-CcCceeeeeeecCcccceE
Confidence 123589999999999999999999999999999999984432 12488888899999997 7799999999999999987
Q ss_pred CC-----------------------------CCceeeeeecccchHHHhccccch---HHHhhcCCCCCcceEEEEeccc
Q 006368 269 RF-----------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 269 ~~-----------------------------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~~~~~i~~~GkDi 316 (648)
.+ +..|+++||++.+..+|.+ +|++ ++++|.| .+ +-+.|.||
T Consensus 415 y~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fyP--t~---llvtG~DI 488 (877)
T COG0525 415 YCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFYP--TD---LLVTGHDI 488 (877)
T ss_pred EecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhccccccccc-CCCCcchHHHhcCC--Cc---cccccchh
Confidence 53 2368899999988888765 8875 6788774 45 67899999
Q ss_pred cchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 317 VPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 317 ~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
+||+..+.-.+-+...-. .|++.+++||.+. -+|+|||||+||||+|.++++ .||+|+|||+|++.+..++|++|++
T Consensus 489 IffWvarmi~~~~~~~~~-~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-~yGaDAlRf~la~~~~~G~Di~~~~ 566 (877)
T COG0525 489 IFFWVARMIMRGLHLTGE-VPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-KYGADALRFTLASLASPGRDINFDE 566 (877)
T ss_pred hHHHHHHHHHHHHHhcCC-CCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-HhChHHHHHHHHhccCCCcccCcCH
Confidence 999877654333333222 4679999999996 889999999999999999999 7999999999998878899999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i 475 (648)
+.+... .+++|+++|.-+.++..+.+ ... .+... ......|+|++..++++.+.+.++|++|+|..|.+.+
T Consensus 567 ~~~~~~--rnF~nKlWNa~Rfv~~~~~~-----~~~-~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~l 637 (877)
T COG0525 567 KRVEGY--RNFLNKLWNATRFVLMNLDD-----LGP-DDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARAL 637 (877)
T ss_pred HHHHHH--HHHHHHHHhHHHHHHhcccc-----cCc-ccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999986 78999999998888765543 111 01000 1225789999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 476 MSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.+|+ ..|+.||+-.+|-... + +....+..+++..++..+..||+||||+++++||+.+..
T Consensus 638 y~F~W~~fcD~YlEl~K~~l~~-~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~ 699 (877)
T COG0525 638 YEFIWNDFCDWYLELAKPRLYG-G-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG 699 (877)
T ss_pred HHHhHHHHHHHHHHHhhhhhcC-c-HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC
Confidence 9998 4599999999875433 2 444446788888999999999999999999999999976
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=645.91 Aligned_cols=507 Identities=16% Similarity=0.207 Sum_probs=395.5
Q ss_pred CCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-----C
Q 006368 12 PPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-----N 84 (648)
Q Consensus 12 ~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-----g 84 (648)
...|.+. .++++|+|++|||||||.||||||++ ++..|+++||+||+||+|+|++|+|+||.+++.+++++ |
T Consensus 116 ~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~-~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~ 194 (1066)
T PLN02381 116 SGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALT-AAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERH 194 (1066)
T ss_pred CCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHH-HHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcC
Confidence 3444442 35677999999999999999999999 56799999999999999999999999999999998753 5
Q ss_pred CC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 85 CS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 85 ~~------------~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
.+ +.++++++...+++++++||+++| .-+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|
T Consensus 195 ~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~ 274 (1066)
T PLN02381 195 LTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTL 274 (1066)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCC
Confidence 54 347788899999999999999887 4566999999999999999999999999999999999999
Q ss_pred Cccccccccc---------------------c--------------------cCCC--Cccc------------------
Q 006368 151 KRFLADRLVE---------------------G--------------------TCPF--EGCN------------------ 169 (648)
Q Consensus 151 ~~~l~d~~v~---------------------g--------------------~cp~--~~c~------------------ 169 (648)
++.|++.+|+ | |.|. .||.
T Consensus 275 ~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~ 354 (1066)
T PLN02381 275 RTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKF 354 (1066)
T ss_pred CCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCE
Confidence 9999998664 1 0000 0000
Q ss_pred ---------------c---C---------------------------------CCCCccccccCCCC-------------
Q 006368 170 ---------------Y---E---------------------------------SARGDQCENCGKLL------------- 185 (648)
Q Consensus 170 ---------------~---~---------------------------------~~~g~~c~~cg~~l------------- 185 (648)
+ + +..|...+.||..+
T Consensus 355 ~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii 434 (1066)
T PLN02381 355 AVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVI 434 (1066)
T ss_pred EECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHH
Confidence 0 0 11222222222100
Q ss_pred ------------CccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH--cCCCCCCCChHHHHHHHHHHhcccc
Q 006368 186 ------------NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN--NMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 186 ------------~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
.+.+...|+|+|||++++.+.++|||++++.+++.+.+.+. .+......|.+..++..+||.+ ++
T Consensus 435 ~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n-~~ 513 (1066)
T PLN02381 435 EALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLEN-IR 513 (1066)
T ss_pred HHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhc-Cc
Confidence 01123469999999999999999999999999999988882 1111112377778888999987 88
Q ss_pred cceeeeccCCCcccCCcCC-------------------------------------------CCceeeeeecccchHHHh
Q 006368 252 VRCITRDLKWGVPVPLERF-------------------------------------------KEKVFYVWFDAPIGYVSI 288 (648)
Q Consensus 252 d~~IsR~~~WGi~vP~~~~-------------------------------------------~~~v~yVWfDa~~~yis~ 288 (648)
|||||||+.||+|+|.|.. +..|++||||+.+.+++.
T Consensus 514 DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~ 593 (1066)
T PLN02381 514 DWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSV 593 (1066)
T ss_pred cceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHH
Confidence 9999999999999998632 235899999999988776
Q ss_pred ccccch---HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccCh
Q 006368 289 TSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFG 364 (648)
Q Consensus 289 ~~~~~~---~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~ 364 (648)
+ +||. +|..|+ |.| +.+.|.||++|+-..+..+-+.+... .|++++++||++. .+|+|||||+||||+|
T Consensus 594 l-g~P~~~~~~~~~~--P~d---~~~~G~Dii~~W~~rmi~~~~~~~~~-~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP 666 (1066)
T PLN02381 594 L-GWPDDTDDLKAFY--PTS---VLETGHDILFFWVARMVMMGMQLGGD-VPFRKVYLHPMIRDAHGRKMSKSLGNVIDP 666 (1066)
T ss_pred h-cCCCCHHHHhccC--CCe---eeeecchhhhhHHHHHHHHHHHhCCC-CchHHheecceEECCCCCCCCCCCCCCCCH
Confidence 4 6753 566777 556 67899999988544333222222222 4679999999997 7999999999999999
Q ss_pred hhhhhc------------------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 365 NDAKDT------------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 365 ~~~l~~------------------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
.++++. .||+|+||||+++..+.+.|++|+...+... ..+++
T Consensus 667 ~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~--r~f~n 744 (1066)
T PLN02381 667 LEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY--RQWCN 744 (1066)
T ss_pred HHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH--HHHHH
Confidence 999872 4899999999998887888999999998754 78999
Q ss_pred HHhHHHHHHHHhhhCCCCCCCCC--CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHH
Q 006368 409 NLGNFINRVLSFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNA 484 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~ 484 (648)
+|+|+++.++..+.. .+.. .++. .....+|+++++.++.++..+.++|++|+|+.|++.+++|+ ..+|.
T Consensus 745 KlwNa~rf~~~~~~~----~~~~~~~~~~---~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~ 817 (1066)
T PLN02381 745 KLWNAVRFAMSKLGD----DYTPPATLSV---ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDV 817 (1066)
T ss_pred HHHHHHHHHHhhccc----ccCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHH
Confidence 999999887654321 1211 0110 12346799999999999999999999999999999999984 67999
Q ss_pred HHHhhhhhhhccCC--hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 485 YLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 485 yi~~~~pw~l~k~~--~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
||+..+||...+.. ......+..++..++..+..||+||||+++++||+.|+
T Consensus 818 Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 818 FIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 99999999764321 12223455677778888999999999999999999996
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-69 Score=636.08 Aligned_cols=503 Identities=17% Similarity=0.206 Sum_probs=384.7
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC------------- 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~------------- 85 (648)
++++|++++|||||||.||||||++ ++.+|+++||+||+||+|.|++|+|+||+||+..++++ |+
T Consensus 100 ~~~~Fv~~~gPPyanG~lHiGHal~-~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~ 178 (1205)
T PTZ00427 100 NKKAYIFYDGPPFATGLPHYGHLLA-GIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDV 178 (1205)
T ss_pred CCCcEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHH
Confidence 4567888999999999999999999 56799999999999999999999999999999999863 32
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 86 ---SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 86 ---~~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
.|.++++++...+++++++|| +++|.+++|+++.|.+.|+++|.+|+++|+||++...++||+.|++.|++.+|.
T Consensus 179 f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~ 258 (1205)
T PTZ00427 179 YNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELN 258 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhh
Confidence 257888899999999999999 667789999999999999999999999999999999999999999999998761
Q ss_pred ------------------------------------------------------------------c--------cCCC-
Q 006368 161 ------------------------------------------------------------------G--------TCPF- 165 (648)
Q Consensus 161 ------------------------------------------------------------------g--------~cp~- 165 (648)
+ |.|+
T Consensus 259 ~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwT 338 (1205)
T PTZ00427 259 LNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338 (1205)
T ss_pred cccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchh
Confidence 0 1121
Q ss_pred -Ccccc----------------------------------------------------------CCCC----------Cc
Q 006368 166 -EGCNY----------------------------------------------------------ESAR----------GD 176 (648)
Q Consensus 166 -~~c~~----------------------------------------------------------~~~~----------g~ 176 (648)
++|.+ ..-. +.
T Consensus 339 Lpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~ 418 (1205)
T PTZ00427 339 LPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKER 418 (1205)
T ss_pred hhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCc
Confidence 01000 0000 00
Q ss_pred --------------------ccc-----------ccCC-------CCCcc------------------------------
Q 006368 177 --------------------QCE-----------NCGK-------LLNAT------------------------------ 188 (648)
Q Consensus 177 --------------------~c~-----------~cg~-------~l~~~------------------------------ 188 (648)
.|+ .-|- .+.+.
T Consensus 419 ~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk 498 (1205)
T PTZ00427 419 AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLK 498 (1205)
T ss_pred eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHH
Confidence 000 0010 00000
Q ss_pred -----------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcccccceee
Q 006368 189 -----------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 189 -----------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~Is 256 (648)
....|+|||||+|++.+..+|||++++++++.+.+..+...+. |... .++..+||.+ ++|||||
T Consensus 499 ~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~n-~~DWcIS 574 (1205)
T PTZ00427 499 NENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWI---PAHIKEKKFHNWIKD-AKDWCIS 574 (1205)
T ss_pred hCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEe---CchhhHhHHHHHHhc-Cccceee
Confidence 0136899999999999999999999999998888766555432 5555 4688999987 8999999
Q ss_pred eccCCCcccCCcCCC--------------------------------------------------CceeeeeecccchHH
Q 006368 257 RDLKWGVPVPLERFK--------------------------------------------------EKVFYVWFDAPIGYV 286 (648)
Q Consensus 257 R~~~WGi~vP~~~~~--------------------------------------------------~~v~yVWfDa~~~yi 286 (648)
||+.||+|+|.|.++ ..|++||||+.+...
T Consensus 575 RqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~ 654 (1205)
T PTZ00427 575 RNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPY 654 (1205)
T ss_pred eccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChH
Confidence 999999999965311 028999999877665
Q ss_pred Hhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc
Q 006368 287 SITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI 360 (648)
Q Consensus 287 s~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN 360 (648)
+. .+|| ++|+.++ |+| +...|.||+++|-...-.+-.++- +.+|++++++|||++ .+|+|||||+||
T Consensus 655 a~-~~~P~~~~~~~f~~~f--PaD---~i~eG~Dq~rgWf~s~l~~s~~l~-~~~PfK~VlvHG~Vld~dG~KMSKSlGN 727 (1205)
T PTZ00427 655 AK-VHYPFSTEKEDFHKIF--PAD---FIAEGLDQTRGWFYTLLVISTLLF-DKAPFKNLICNGLVLASDGKKMSKRLKN 727 (1205)
T ss_pred HH-hCCCcccchhhHhccC--Cce---EEEEecchhccHHHHHHHHHHHhc-CCCCcceeEEccEEEcCCCCCcccCCCC
Confidence 43 3664 3577777 567 789999999876433222111211 224669999999998 599999999999
Q ss_pred ccChhhhhhcCCCchhHHHHHhhcCC-CCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCC---CCCCCCCCCC
Q 006368 361 GVFGNDAKDTNIPVEVWRYYLLTNRP-EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG---QGYGSIVPDA 436 (648)
Q Consensus 361 ~I~~~~~l~~~~~~d~lR~~ll~~~~-~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~---~~~~~~~p~~ 436 (648)
+|+|.++++ +||+|+|||||++..+ .++|++|+++.+.+..+ .+.+++.|.++.+...+..... ..|+. .|..
T Consensus 728 vIDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r-~~l~klwN~~rF~~~~i~~~~~~~~~~f~~-~~~~ 804 (1205)
T PTZ00427 728 YPDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK-SFILPFYHSFRFFSQEVTRYECLNKKQFLF-NTDY 804 (1205)
T ss_pred CCCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH-HHHHHHHHHHHHHHhccccccccccccCCc-Cccc
Confidence 999999998 8999999999998655 47999999999877664 4567777777766654432000 00100 0100
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHH
Q 006368 437 NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHL 515 (648)
Q Consensus 437 ~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~ 515 (648)
.......+|+|+++.++.+++.+.++|++|+++.|++.|++++. .+|+|++..++-.....+......++.++.++++.
T Consensus 805 ~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~ 884 (1205)
T PTZ00427 805 IYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHL 884 (1205)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHH
Confidence 00123567999999999999999999999999999999999996 79999997764111111123456788999999999
Q ss_pred HHHHhhccchHHHHHHHHHhCC
Q 006368 516 LACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 516 l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++.||+||||++|++||+.|+.
T Consensus 885 ~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 885 FTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHccccchHHHHHHHHHhhh
Confidence 9999999999999999999963
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-69 Score=606.75 Aligned_cols=497 Identities=22% Similarity=0.319 Sum_probs=395.6
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-----------
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~----------- 85 (648)
..|++.|++..+|||+||.+|||||.|.+| .||+.||..|+||+|.++.|+|+||+||+.+++++ |.
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ 123 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVE 123 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHH
Confidence 357788999999999999999999999865 99999999999999999999999999999888775 42
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.|++++.++.+.+++.+++||+.. |+-+.|.++.|++.+.++|.+++++|+||++..+++||++|++.|++.+|
T Consensus 124 efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEv 203 (933)
T COG0060 124 EFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEV 203 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhh
Confidence 256777788899999999999865 46788999999999999999999999999999999999999999999887
Q ss_pred cc-----------------------------cCCC-----------C--------------------------ccc---c
Q 006368 160 EG-----------------------------TCPF-----------E--------------------------GCN---Y 170 (648)
Q Consensus 160 ~g-----------------------------~cp~-----------~--------------------------~c~---~ 170 (648)
+. |+|+ | ..+ +
T Consensus 204 ey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~ 283 (933)
T COG0060 204 EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDY 283 (933)
T ss_pred cccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcce
Confidence 62 4554 0 000 0
Q ss_pred C------------------------------------------------CCCC----ccccccC------------C---
Q 006368 171 E------------------------------------------------SARG----DQCENCG------------K--- 183 (648)
Q Consensus 171 ~------------------------------------------------~~~g----~~c~~cg------------~--- 183 (648)
+ ++.| ..|..-| .
T Consensus 284 ~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~ 363 (933)
T COG0060 284 EVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTE 363 (933)
T ss_pred EEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccc
Confidence 0 0000 0111111 1
Q ss_pred --------CC-Ccc-------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCC
Q 006368 184 --------LL-NAT-------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (648)
Q Consensus 184 --------~l-~~~-------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (648)
.+ +.. ...+|+||||++|+++|.++|||.+++.+++++++-+++..+. |
T Consensus 364 ~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~---P 440 (933)
T COG0060 364 EAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWV---P 440 (933)
T ss_pred cchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEE---C
Confidence 11 000 1247999999999999999999999999999999888776654 4
Q ss_pred hHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------------------------------------------
Q 006368 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------------------------------------------- 270 (648)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------------------------------------------- 270 (648)
....+++.+||++ .+|||||||+.||+|+|.+..
T Consensus 441 ~~~~~R~~~mve~-r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g 519 (933)
T COG0060 441 DWGKNRFGNMVEN-RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDG 519 (933)
T ss_pred hhHHHHHHHHHcC-CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCc
Confidence 4456788999986 899999999999999998520
Q ss_pred -----CCceeeeeecccchHHHhccccchHHHhhcCCC-CCcceEEEEecccc--chhHhHHHHHhhhcCCCcccCceEE
Q 006368 271 -----KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNP-ENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWTLMKTIS 342 (648)
Q Consensus 271 -----~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p-~~~~~i~~~GkDi~--~fH~i~~pa~l~a~g~~~~~p~~~~ 342 (648)
...|++||||+...+.+....... ..|+.. +| +...|.|+. +||+..-.+..+- | .+|.++++
T Consensus 520 ~~~~rv~DvlDVWFDSGs~~~a~~~~~~~---~~~~~~~aD---~~lEGsDQ~RGWF~Ssl~~s~a~~-~--~aPYk~vl 590 (933)
T COG0060 520 KEYRRVPDVLDVWFDSGSTPYAVLHPREN---LKFPALFAD---FYLEGSDQTRGWFYSSLLTSTALF-G--RAPYKNVL 590 (933)
T ss_pred ceeEecCcceEEEEcCCCCcccccCCccc---ccCccccCc---EEEEeccccchhHHHHHHHHHHHc-C--CchHHHHh
Confidence 126899999998877665421111 223210 25 799999998 5887655444333 2 35779999
Q ss_pred eeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhh
Q 006368 343 VTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (648)
Q Consensus 343 ~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 421 (648)
+|||+. -+|+|||||+||+|+|.++++ .||+|+||+|+++. ++..|+.||++.+... ++..+.+.|.+++.+..+
T Consensus 591 tHGfvlDe~GrKMSKSlGN~v~P~~V~~-~yGADiLRLwv~ss-d~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl 666 (933)
T COG0060 591 THGFVLDEKGRKMSKSLGNVVDPQDVID-KYGADILRLWVASS-DYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNL 666 (933)
T ss_pred hcccEECCCCCCccccCCCcCCHHHHHH-hhCchheeeeeeec-CchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 999986 789999999999999999999 89999999999984 5779999999997665 789999999999998886
Q ss_pred hCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhh--hhhccC
Q 006368 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQF--WKLYKE 497 (648)
Q Consensus 422 ~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~p--w~l~k~ 497 (648)
.. |+.........+...+|++++..++.+++.+.++|++|+|+++++.+++++ ..+|.||+..+. |..+ .
T Consensus 667 ~~-----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~-~ 740 (933)
T COG0060 667 DD-----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA-A 740 (933)
T ss_pred cC-----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC-C
Confidence 64 543321111124567899999999999999999999999999999999998 459999998886 4432 3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 498 ~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
+.....++..++.+++..+..+|+||+|+++++||+.|...
T Consensus 741 ~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 741 DSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 33444556777788999999999999999999999999755
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=611.23 Aligned_cols=443 Identities=20% Similarity=0.310 Sum_probs=358.0
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
+++||++++|||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+||+.+|+++|++|.++++++.+.++++
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 110 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQ 110 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 77899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccc
Q 006368 102 YKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (648)
Q Consensus 102 ~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~ 179 (648)
+++||+++| .+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 111 ~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~------------------- 171 (805)
T PRK00390 111 LKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI------------------- 171 (805)
T ss_pred HHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-------------------
Confidence 999999887 68999999999999999999999999999999999999999999988764
Q ss_pred ccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC------------------C----CC-----
Q 006368 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS------------------V----AG----- 232 (648)
Q Consensus 180 ~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~------------------~----~~----- 232 (648)
++.|++||.+++.++++||||++++|.++|.++++... . ++
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~ 239 (805)
T PRK00390 172 ------------DGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSD 239 (805)
T ss_pred ------------CCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCC
Confidence 23467789999999999999999999998888754420 0 00
Q ss_pred ----CC----------------C---------------------------------------------------------
Q 006368 233 ----SW----------------S--------------------------------------------------------- 235 (648)
Q Consensus 233 ----~~----------------~--------------------------------------------------------- 235 (648)
.| |
T Consensus 240 ~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi 319 (805)
T PRK00390 240 EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPV 319 (805)
T ss_pred CEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeE
Confidence 00 0
Q ss_pred -----------------------------------------------------------------------hHHHHHHHH
Q 006368 236 -----------------------------------------------------------------------QNAIQATHA 244 (648)
Q Consensus 236 -----------------------------------------------------------------------~~~~~~~~~ 244 (648)
..+.+.+.+
T Consensus 320 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~ 399 (805)
T PRK00390 320 WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIA 399 (805)
T ss_pred EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHH
Confidence 000111112
Q ss_pred HHhc----------ccccceeeeccCCCcccCCcCC--------------------------------------------
Q 006368 245 WLKE----------GLKVRCITRDLKWGVPVPLERF-------------------------------------------- 270 (648)
Q Consensus 245 ~l~~----------gl~d~~IsR~~~WGi~vP~~~~-------------------------------------------- 270 (648)
.|++ .++|||||||+.||+|+|.+.+
T Consensus 400 ~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (805)
T PRK00390 400 WLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKC 479 (805)
T ss_pred HHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCcccc
Confidence 2221 1569999999999999994310
Q ss_pred ------CCceeeeeecccchHHHhcc-c----c--chHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhhhcCC-
Q 006368 271 ------KEKVFYVWFDAPIGYVSITS-C----Y--TNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLLGTGE- 333 (648)
Q Consensus 271 ------~~~v~yVWfDa~~~yis~~~-~----~--~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~a~g~- 333 (648)
+..|++||||+.+-|+...- . . .+.|..|+ |.| +.+.|.|++..|. -+|...|...|.
T Consensus 480 g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~ 554 (805)
T PRK00390 480 GKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWL--PVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLV 554 (805)
T ss_pred CCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcC--CCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34688999999765554321 0 1 23566666 567 7999999875553 356666665542
Q ss_pred -CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 334 -NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 334 -~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
.-.|++.+++|||+ |||||+||+|+|.++++ .||+|++|||++..+++++|++|+++.+.++ ....+++.|
T Consensus 555 ~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--~~~l~kl~~ 626 (805)
T PRK00390 555 SSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGVEGA--YRFLQRVWR 626 (805)
T ss_pred cCCcchhhheecCcE-----EeCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCccCCcccCHHHHHHH--HHHHHHHHH
Confidence 12356899999999 99999999999999998 7999999999998778999999999999887 567888888
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw 492 (648)
+++...+... .++ ......|++++..++.+++++.++|++|+|+.|+..+++|++..++|++
T Consensus 627 ~~~~~~~~~~-----~~~--------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~----- 688 (805)
T PRK00390 627 LVVDAKGEAG-----ALD--------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED----- 688 (805)
T ss_pred HHHHhhhccc-----ccC--------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-----
Confidence 8777322111 011 1123578999999999999999999999999999999999998888861
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 493 KLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 493 ~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.....++.++++.+..+|+||||++|+++|+.|+.
T Consensus 689 ----------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~ 723 (805)
T PRK00390 689 ----------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH 723 (805)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 01233556788999999999999999999999974
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=610.02 Aligned_cols=450 Identities=19% Similarity=0.300 Sum_probs=363.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++||++++|||||.+||||+++ |+.+||++||+||+||+|+|++|+|+||+||+.+|+++|++|.++++++.+.+
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~-~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~ 104 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRN-YTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANM 104 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHH-HHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677999999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++||+++| .+++|++|.|.+.+|++|.+|+++|+||++.+.++||+.|+++|++.+|..
T Consensus 105 ~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~--------------- 169 (842)
T TIGR00396 105 KKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDS--------------- 169 (842)
T ss_pred HHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhh---------------
Confidence 999999999886 589999999999999999999999999999999999999999999987631
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH-------------------
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN------------------- 237 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------------------- 237 (648)
+++|++||.+++.++.+||||++++|.++|.+++++... ||.+
T Consensus 170 ---------------~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~---wp~~v~~~q~~wig~s~g~~i~f 231 (842)
T TIGR00396 170 ---------------DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDH---WPESVKEMQRNWIGKSEGVEITF 231 (842)
T ss_pred ---------------cCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcc---ccHHHHHHHHhcccccceEEEEE
Confidence 135778899999999999999999999988886543320 1100
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 232 ~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~ 311 (842)
T TIGR00396 232 KIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLT 311 (842)
T ss_pred EcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCC
Confidence
Q ss_pred -----------------------------------------------------------------------------HHH
Q 006368 238 -----------------------------------------------------------------------------AIQ 240 (648)
Q Consensus 238 -----------------------------------------------------------------------------~~~ 240 (648)
+.+
T Consensus 312 ~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~ 391 (842)
T TIGR00396 312 GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEARE 391 (842)
T ss_pred CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHH
Confidence 001
Q ss_pred HHHHHHhc----------ccccceeeeccCCCcccCCcCC----------------------------------------
Q 006368 241 ATHAWLKE----------GLKVRCITRDLKWGVPVPLERF---------------------------------------- 270 (648)
Q Consensus 241 ~~~~~l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------------------- 270 (648)
.+.++|.+ .|+|||||||+.||+|+|.+.+
T Consensus 392 ~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~ 471 (842)
T TIGR00396 392 AIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNV 471 (842)
T ss_pred HHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcC
Confidence 11111211 2569999999999999997310
Q ss_pred -----------CCceeeeeecccchHHHhc-c---cc---chHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhh
Q 006368 271 -----------KEKVFYVWFDAPIGYVSIT-S---CY---TNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLL 329 (648)
Q Consensus 271 -----------~~~v~yVWfDa~~~yis~~-~---~~---~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~ 329 (648)
+..|++||||+.+.|+..+ . .+ .+.+..|+ |.| +++.|.|++..|. -+|...|.
T Consensus 472 ~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yi~G~dhailHLlyaRf~~~~l~ 546 (842)
T TIGR00396 472 TCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWL--PVD---LYIGGAEHAILHLLYARFWHKFLY 546 (842)
T ss_pred cCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccC--CCc---EeeccHHHHHHHHHHHHHHHHHHH
Confidence 2357889999887666421 1 11 12355455 567 7999999975553 33666665
Q ss_pred hcCC--CcccCceEEeeceeec-----CCc---------------------------cccccCCcccChhhhhhcCCCch
Q 006368 330 GTGE--NWTLMKTISVTEYLNY-----ESG---------------------------KFSKSKGIGVFGNDAKDTNIPVE 375 (648)
Q Consensus 330 a~g~--~~~~p~~~~~hg~l~~-----~G~---------------------------KMSKS~gN~I~~~~~l~~~~~~d 375 (648)
..|. .-.|++++++||++.- +|+ |||||+||+|+|.++++ .||+|
T Consensus 547 ~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~-~ygaD 625 (842)
T TIGR00396 547 DIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK-KHGAD 625 (842)
T ss_pred hccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH-HcCch
Confidence 5442 1235689999999975 788 99999999999999999 79999
Q ss_pred hHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 006368 376 VWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKY 455 (648)
Q Consensus 376 ~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~ 455 (648)
++|||+++.+++.+|++|+++.+..+ ....+++.|+++++...+.. +.. ++. ......|++++..++.+
T Consensus 626 alRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-----~~~-~~~---~~l~~~d~~il~~l~~~ 694 (842)
T TIGR00396 626 ALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-----KTY-LTP---TILEEAQKELRRDVHKF 694 (842)
T ss_pred HHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-----ccc-CCc---ccCCHHHHHHHHHHHHH
Confidence 99999997778889999999999876 67889999999887654432 110 110 12345789999999999
Q ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 006368 456 VEQYLEAMEKVK-LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQ 534 (648)
Q Consensus 456 ~~~v~~a~d~~~-~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~ 534 (648)
++.+.++|++|+ |+.|++.+++|++...+|.. . .++.+++..+..||+||+||+|++||+.
T Consensus 695 i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~---~~l~~~l~~ll~lLaPf~PhiaEElW~~ 756 (842)
T TIGR00396 695 LKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D---ALYLEYLKGFLTVLSPFAPHLAEELWEK 756 (842)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H---HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999988 99999999999976554321 0 2455788899999999999999999999
Q ss_pred hCC
Q 006368 535 LNL 537 (648)
Q Consensus 535 L~~ 537 (648)
|+.
T Consensus 757 l~~ 759 (842)
T TIGR00396 757 LGS 759 (842)
T ss_pred hCC
Confidence 984
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=604.50 Aligned_cols=450 Identities=18% Similarity=0.302 Sum_probs=351.1
Q ss_pred CCCCcEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
.++++|||++++|||||. +||||+++ |+.+||++||+||+||+|+|++|+|+||+||+.+|.+.|..|+++++++.+.
T Consensus 107 ~~k~k~~v~~~~PYpnG~~lHiGH~~~-y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~ 185 (963)
T PLN02563 107 TSKPKFYVLDMFPYPSGAGLHVGHPEG-YTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185 (963)
T ss_pred CCCCCEEEEeCCCCCCCcccchhhHHH-HHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHH
Confidence 356789999999999997 99999998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCC
Q 006368 98 HKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (648)
Q Consensus 98 ~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (648)
+++++++||+++| .+++|++|.|.+.+|++|.+|+++|+||++...++||+.|++.|++.+
T Consensus 186 ~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~E----------------- 248 (963)
T PLN02563 186 FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE----------------- 248 (963)
T ss_pred HHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHH-----------------
Confidence 9999999999987 799999999999999999999999999999999999999998888644
Q ss_pred ccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC--------------------------
Q 006368 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-------------------------- 229 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-------------------------- 229 (648)
+++++|++||++++.++..||||++++|+++|+++++...
T Consensus 249 --------------v~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~ 314 (963)
T PLN02563 249 --------------VVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVL 314 (963)
T ss_pred --------------hhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEec
Confidence 4566789999999999999999999999999998863211
Q ss_pred --------C-CCCC--Ch--------------H--H------------HHHHHH-------------------H------
Q 006368 230 --------V-AGSW--SQ--------------N--A------------IQATHA-------------------W------ 245 (648)
Q Consensus 230 --------~-~~~~--~~--------------~--~------------~~~~~~-------------------~------ 245 (648)
. ...| ++ . + ...+.. +
T Consensus 315 ~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~ 394 (963)
T PLN02563 315 DGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAI 394 (963)
T ss_pred CccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEe
Confidence 0 0000 00 0 0 000000 0
Q ss_pred -------------------------------------------------Hh---------------cc------------
Q 006368 246 -------------------------------------------------LK---------------EG------------ 249 (648)
Q Consensus 246 -------------------------------------------------l~---------------~g------------ 249 (648)
|. +|
T Consensus 395 ~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~ 474 (963)
T PLN02563 395 NPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDI 474 (963)
T ss_pred ccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCccccc
Confidence 20 01
Q ss_pred -----------------------------cccceeeeccCCCcccCCcCC------------------------------
Q 006368 250 -----------------------------LKVRCITRDLKWGVPVPLERF------------------------------ 270 (648)
Q Consensus 250 -----------------------------l~d~~IsR~~~WGi~vP~~~~------------------------------ 270 (648)
|+|||||||+.||.|+|.+.+
T Consensus 475 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 475 NGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 679999999999999997421
Q ss_pred ------------------------CCceeeeeecccchHHHhcc-c-----cchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 271 ------------------------KEKVFYVWFDAPIGYVSITS-C-----YTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 271 ------------------------~~~v~yVWfDa~~~yis~~~-~-----~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
+..|++|||++.+-|+..+- . +..+..++|- |.| +++.|.||.-.|
T Consensus 555 ~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~-PvD---~yigG~dhailH 630 (963)
T PLN02563 555 EPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWM-PVD---LYVGGAEHAVLH 630 (963)
T ss_pred CCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcC-CCc---EeeccHHHHhhH
Confidence 12477899998877765321 0 1112334454 677 799999997555
Q ss_pred ---HhHHHHHhhhcCC--CcccCceEEeeceee----------cCCc---------------------------------
Q 006368 321 ---TVMFPSTLLGTGE--NWTLMKTISVTEYLN----------YESG--------------------------------- 352 (648)
Q Consensus 321 ---~i~~pa~l~a~g~--~~~~p~~~~~hg~l~----------~~G~--------------------------------- 352 (648)
+-+|-..|+..|+ .-.|+++++.||+++ .+|+
T Consensus 631 LlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (963)
T PLN02563 631 LLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLK 710 (963)
T ss_pred hHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccc
Confidence 4456555555552 113678999999996 4566
Q ss_pred ------------cccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 006368 353 ------------KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSF 420 (648)
Q Consensus 353 ------------KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~ 420 (648)
|||||+||+|+|.++++ +||+|+||||++..+|..+|.+|+.+.+... ..+++++.|++......
T Consensus 711 ~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~--~rfL~rlwn~~~~~~~~ 787 (963)
T PLN02563 711 DDPSIRLIARAHKMSKSRGNVVNPDDVVS-EYGADSLRLYEMFMGPLRDSKTWSTSGVEGV--HRFLGRTWRLVVGAPLP 787 (963)
T ss_pred cCCcccccccccccccccCCcCCHHHHHH-HcCcHHHHHHHHhCCCcccccccCHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 99999999999999999 7999999999999888889999998887765 34556666665432110
Q ss_pred hhCCCCCCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCh
Q 006368 421 IAKPPGQGYG-SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (648)
Q Consensus 421 ~~k~~~~~~~-~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (648)
.. .+. +..+ .....+++++..++.+++++.++|++|+|+.|+..+|+|++..+. |. .
T Consensus 788 -~~----~~~~~~~~-----~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~-----~ 845 (963)
T PLN02563 788 -DG----SFRDGTVV-----TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD-----K 845 (963)
T ss_pred -cc----ccCccccc-----cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch-----H
Confidence 00 111 1111 111346788999999999999999999999999999999976542 21 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 500 ~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
...++++.+.+||+||||++|++||++||.
T Consensus 846 --------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~ 875 (963)
T PLN02563 846 --------VPREAIEPFVLLLSPYAPHLAEELWFRLGH 875 (963)
T ss_pred --------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCC
Confidence 124678899999999999999999999984
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=553.70 Aligned_cols=303 Identities=22% Similarity=0.386 Sum_probs=272.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCH-------------
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP------------- 87 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~------------- 87 (648)
++|+|.+|||||||.+|||||++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~-~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALN-KILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHH-HHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 36999999999999999999998 56799999999999999999999999999999999987 8765
Q ss_pred ---HHHHHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccccc
Q 006368 88 ---KEICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (648)
Q Consensus 88 ---~e~~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (648)
+++++++++.|++++++||| ++|.+++|++++|.+.++++|.+|+++|+||++.+.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 79999999999999999999 567899999999999999999999999999999999987
Q ss_pred CCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHH
Q 006368 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQAT 242 (648)
Q Consensus 163 cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (648)
+++.++++||||+|+++++.+.+++++... .|+++++++
T Consensus 144 --------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~---~P~~~~~~~ 182 (338)
T cd00818 144 --------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVNW---IPEWVKNRF 182 (338)
T ss_pred --------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCcE---ECHHHHHHH
Confidence 357789999999999999999999987432 488888999
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCC----------CceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceE
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFK----------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELY 309 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~----------~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i 309 (648)
.+|+++ |+||||||++.||+|+|.+..+ ++|+||||||+++|++.. +|+ .+|+.||+ .+ +
T Consensus 183 ~~~l~~-l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~-~~~~~~~~~~~~~p--~d---~ 255 (338)
T cd00818 183 GNWLEN-RRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL-HYPFENEDFEELFP--AD---F 255 (338)
T ss_pred HHHHhc-chhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc-CCCCcchhhhccCC--Ce---E
Confidence 999975 9999999999999999985433 789999999999999875 554 36888995 45 7
Q ss_pred EEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC
Q 006368 310 QFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (648)
Q Consensus 310 ~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~ 386 (648)
+++|+||++ ||+++||+++++ |. .+|+.+++|||++ .+|+|||||+||+|++.|+++ .|++|++||||++.+|
T Consensus 256 ~~~GkDii~~wf~~~~~~~~~~~-~~--~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-~~~~D~~R~~l~~~~~ 331 (338)
T cd00818 256 ILEGSDQTRGWFYSLLLLSTALF-GK--APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-KYGADALRLWVASSDV 331 (338)
T ss_pred EeecchHHhHHHHHHHHHHHHhc-CC--CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-HcCcHHHHHHHHhCCC
Confidence 999999996 999999998754 33 3679999999987 589999999999999999998 7999999999999898
Q ss_pred CCCCccc
Q 006368 387 EVSDTLF 393 (648)
Q Consensus 387 ~~~d~~f 393 (648)
.++|++|
T Consensus 332 ~~~d~~~ 338 (338)
T cd00818 332 YAEDLRF 338 (338)
T ss_pred ccCCCCC
Confidence 9999876
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-65 Score=592.86 Aligned_cols=461 Identities=19% Similarity=0.268 Sum_probs=365.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------------CC---------CHHHHHH
Q 006368 37 PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------NC---------SPKEICD 92 (648)
Q Consensus 37 ~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------g~---------~~~e~~~ 92 (648)
|||||+++ ++.+|+++||+||+||+|+|++|+|+||+||+..|++. |+ .|.++++
T Consensus 1 lHiGH~~~-~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRT-YTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHH-HHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 79999998 67799999999999999999999999999999988642 33 5678899
Q ss_pred HHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc---------
Q 006368 93 KYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--------- 161 (648)
Q Consensus 93 ~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--------- 161 (648)
++...+++++++||++.| +-+.|++|.|.+.+++.|.+|+++|+||++...+.||+.|++.+++.++..
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 999999999999999887 456699999999999999999999999999999999999999999987641
Q ss_pred -----------------cCCC-----------Cccc----------------------c--------------C------
Q 006368 162 -----------------TCPF-----------EGCN----------------------Y--------------E------ 171 (648)
Q Consensus 162 -----------------~cp~-----------~~c~----------------------~--------------~------ 171 (648)
|.|+ |... + +
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 1121 0000 0 0
Q ss_pred -----------------------------CC-----------CC------------ccc---------------------
Q 006368 172 -----------------------------SA-----------RG------------DQC--------------------- 178 (648)
Q Consensus 172 -----------------------------~~-----------~g------------~~c--------------------- 178 (648)
++ .+ ..|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 00 11 011
Q ss_pred --c---------------ccCCCCCc-c----------------------------cc-CCCcCCCCCCCcEEee-ccce
Q 006368 179 --E---------------NCGKLLNA-T----------------------------DL-KDPKCKVCRNAPQIRD-TNHL 210 (648)
Q Consensus 179 --~---------------~cg~~l~~-~----------------------------el-~~~~~~~~g~~~~~~~-~~~~ 210 (648)
+ .-|++.+. . ++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0 11222210 0 11 1378889999999876 5999
Q ss_pred eeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc------CCCCceeeeeeccc
Q 006368 211 FLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE------RFKEKVFYVWFDAP 282 (648)
Q Consensus 211 f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~------~~~~~v~yVWfDa~ 282 (648)
|++++ .+++.+.+.++++.. +|+..++++.+||+. ++||||||++.||+|+|.+ ...+.++|+|+++.
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~~---~P~~~~~~~~~~l~~-l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i 475 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNMEI---IPEEYRKEFENTIDW-LKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTI 475 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCEE---ECHHHHHHHHHHHhh-hhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHH
Confidence 99997 799999999987653 477788899999995 9999999999999999953 13467899999998
Q ss_pred chHHHhc------------------c----------cc--------chHHHhhcCCCCCcceEEEEeccccchhHhHHHH
Q 006368 283 IGYVSIT------------------S----------CY--------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (648)
Q Consensus 283 ~~yis~~------------------~----------~~--------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa 326 (648)
..|+... . ++ .++|..|| |.| +|++|+||++||..+| .
T Consensus 476 ~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~--P~D---~~~~GkDii~~Hl~~~-~ 549 (897)
T PRK12300 476 AHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWY--PVD---WRHSGKDLIPNHLTFF-I 549 (897)
T ss_pred HHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccC--Cce---EEEeeeccCccHHHHH-H
Confidence 8776531 0 11 12466677 456 8999999999999999 5
Q ss_pred HhhhcCCC-cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHH
Q 006368 327 TLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (648)
Q Consensus 327 ~l~a~g~~-~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 405 (648)
+++.+..+ -+.|+++++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+.+. .+
T Consensus 550 ~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~-~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--~~ 626 (897)
T PRK12300 550 FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIE-EYGADVVRLYLTSSAELLQDADWREKEVESV--RR 626 (897)
T ss_pred HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHH-HcChHHHHHHHHhCCCCCCCCccCHHHHHHH--HH
Confidence 55554332 24679999999999999999999999999999999 7999999999998888899999999987665 34
Q ss_pred HHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHH
Q 006368 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM-SISSEGNA 484 (648)
Q Consensus 406 l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~-~l~~~~N~ 484 (648)
+.+++.|++.++... .+. ......|+++++.++.+++.+.++|++|+++.|++.++ .+++.+|.
T Consensus 627 ~l~r~~~~~~~~~~~------------~~~---~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~ 691 (897)
T PRK12300 627 QLERFYELAKELIEI------------GGE---EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW 691 (897)
T ss_pred HHHHHHHHHHHHhcC------------CCc---cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455555554443221 111 12345789999999999999999999999999998886 67788999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
|++..+| .+..++.++++.+++||+||||++|++||+.||.+
T Consensus 692 Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 692 YLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9987654 34567788999999999999999999999999853
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=530.18 Aligned_cols=293 Identities=28% Similarity=0.466 Sum_probs=268.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC-------------CHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC-------------SPKE 89 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~-------------~~~e 89 (648)
+|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++++. +|.+
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~-~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALT-HIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 4899999999999999999998 7889999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCc
Q 006368 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (648)
+++++.+.|++++++|||++| .|++|+++.|...|+++|.+|+++|+||++.+.+
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999998 9999999999999999999999999999876554
Q ss_pred cccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHh
Q 006368 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK 247 (648)
Q Consensus 168 c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (648)
+.+.+||++++++++++.+++++++ .+|++.++++.+||+
T Consensus 137 -------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~---~~p~~~~~~~~~~l~ 176 (312)
T cd00668 137 -------------------------------------RITEQWFFDMPKFKEKLLKALRRGK---IVPEHVKNRMEAWLE 176 (312)
T ss_pred -------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC---cCChHHHHHHHHHHh
Confidence 3577899999999999999998765 367888889999999
Q ss_pred cccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 248 EGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 248 ~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
+++ ||||||+++||+|+| ++++||||||+++|++.+ ++. ..|..||+ .+ +|++|+||++||..+|
T Consensus 177 ~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~-~~~~~~~~~~~~~~--~d---i~~~G~D~~~~h~~~~ 244 (312)
T cd00668 177 SLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSL-GYPEEKEWFKDSYP--AD---WHLIGKDILRGWANFW 244 (312)
T ss_pred CCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHc-CCCccchhhhhcCC--ce---EEEEecchhhhHHHHH
Confidence 877 999999999999999 679999999999999886 332 35788884 45 8999999999999999
Q ss_pred HHHhhhcCCCcccCceEEeeceeecCC-ccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 325 PSTLLGTGENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 325 pa~l~a~g~~~~~p~~~~~hg~l~~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
++++++++.. .+|+.+++|||++.+| +|||||+||+|++.++++ .+++|++||||++.+|+++|.+|
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~-~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 245 ITMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE-KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-HcCcHHHHHHHHhcCCccCCCCC
Confidence 9999988753 4688999999999887 999999999999999999 69999999999998989899876
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=528.98 Aligned_cols=293 Identities=24% Similarity=0.416 Sum_probs=265.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+++||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~-~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRT-YTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHH-HHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999997 788999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 103 KWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 103 ~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++|||++| .+++|++|+|.+.++++|.+|+++|+||++.+.++||.
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~-------------------------------- 127 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCK-------------------------------- 127 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeC--------------------------------
Confidence 99999998 57899999999999999999999999999999999971
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeec--hhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
.++||||+| ++|++.+.++++++. .||++.++.+.+|++ |||+
T Consensus 128 -------------------------~~~~~f~~l~~~~~~~~l~~~l~~~~---~~p~~~~~~~~~~l~-------isR~ 172 (314)
T cd00812 128 -------------------------LLDQWFLKYSETEWKEKLLKDLEKLD---GWPEEVRAMQENWIG-------CSRQ 172 (314)
T ss_pred -------------------------ccceEEEEcCcHHHHHHHHHHHHhcC---cCCHHHHHHHHHHhe-------eeee
Confidence 467999999 999999999998864 489999999999986 9999
Q ss_pred cCCCcccCCcCCCCceeeeeecccc---hHHHhccc-c---------chHHHhhcCCCCCcceEEEEeccccchhH---h
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPI---GYVSITSC-Y---------TNEWEQWWKNPENVELYQFMGKDNVPFHT---V 322 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~---~yis~~~~-~---------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i 322 (648)
+.||||+|. ++++|||||+++ +|+++... . .+.|..||| .| +|++|+|+++||+ +
T Consensus 173 ~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p--~d---i~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 173 RYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYP--VD---IYIGGKEHAPNHLLYSR 243 (314)
T ss_pred cCCcCCcCc----ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCC--Ce---eeecchhHHHHHHHHHH
Confidence 999999996 689999999997 77765421 1 234777884 45 8999999999997 8
Q ss_pred HHHHHhhhcCC-CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 323 MFPSTLLGTGE-NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 323 ~~pa~l~a~g~-~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
+||++|+++|+ ...+|+++.+||||+++|+|||||+||+|++.|+++ .+++|++||||++.++ .|.+|+|
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~-~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK-KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHH-HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 99999999985 013678999999999999999999999999999999 6999999999998777 8888875
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-63 Score=552.72 Aligned_cols=497 Identities=16% Similarity=0.162 Sum_probs=352.9
Q ss_pred CCCCCCCCCCCCCCC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHH-hCCCceeeecCCcccchHHHHHHHHcC
Q 006368 7 ENPAAPPPKLPIPGK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAMEDN 84 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r-~~G~~v~~v~g~D~~G~ki~~~A~~~g 84 (648)
-+||+|++|+|..++ -++|||+ ||||+.+||||||+ ||.+||++||+| ..||+|.||+|+||||+||+.+|+++|
T Consensus 45 tlt~~k~~f~p~~~~~v~~Y~CG--PTvYd~~HiGhart-~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g 121 (651)
T PTZ00399 45 SLTGGKVEFVPQNGRQVRWYTCG--PTVYDSSHLGHART-YVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEK 121 (651)
T ss_pred CCCCCccccccCCCCeeEEEEeC--CCccCCcccccchH-HHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhC
Confidence 478999999997654 3577776 55669999999998 789999999999 779999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 85 CS-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 85 ~~-~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
++ +.+++++|.+.|.++++.|||.++.|++++ .+|...+++++++|+++|++|++.++
T Consensus 122 ~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gs-------------------- 180 (651)
T PTZ00399 122 LSIFLELARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGS-------------------- 180 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCe--------------------
Confidence 99 999999999999999999999997776655 59999999999999999999976444
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
+||++++|.+. ...|.+.. |.+..+...
T Consensus 181 ----------------------------------------------vyFd~~~f~~~-~~~Yg~L~-----p~~~~~~~~ 208 (651)
T PTZ00399 181 ----------------------------------------------VYFDVEAFRKA-GHVYPKLE-----PESVADEDR 208 (651)
T ss_pred ----------------------------------------------EEEEchhcccc-hhhHHhhC-----hhhcCCHHH
Confidence 46666666554 34444421 111111222
Q ss_pred HHHhcc-cccce-eeec-cC---CCcccCCcCCCCceeeeeecccchHHHhccccchH----HHhhcCCCCCcceEEEEe
Q 006368 244 AWLKEG-LKVRC-ITRD-LK---WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----WEQWWKNPENVELYQFMG 313 (648)
Q Consensus 244 ~~l~~g-l~d~~-IsR~-~~---WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~----~~~~w~~p~~~~~i~~~G 313 (648)
.+..++ +.+.+ ++|+ .+ ||++.|++. . |+ +++|+= -.+|.-+ -.++...|.| ||.+|
T Consensus 209 ~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep--~-----W~-SpwG~G--rPGWHiECsam~~~~lg~~~D---Ih~gG 275 (651)
T PTZ00399 209 IAEGEGALGKVSGEKRSPNDFALWKASKPGEP--S-----WD-SPWGKG--RPGWHIECSAMASNILGDPID---IHSGG 275 (651)
T ss_pred HhcccCCccccCcCCCCCccHHhhCCCCCCCC--C-----CC-CCCCCC--CCCchHHHHHHHHHHcCCcce---eeccC
Confidence 233343 54544 7883 44 999999873 2 64 788762 2355321 2223333455 89999
Q ss_pred ccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
.|++|+|+..--|.-.|+--..+..++++++|||+++|+|||||+||||+|.++++ .|++|++|||||+ .++++|++|
T Consensus 276 ~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLe-kygaDaLR~~lLs-~~~~~dldF 353 (651)
T PTZ00399 276 IDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALS-KYTARQIRLLFLL-HKWDKPMNY 353 (651)
T ss_pred CCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHH-HcChHHHHHHHHh-cCCCCCCcc
Confidence 99999998777777666432112335555559999999999999999999999999 7999999999997 588999999
Q ss_pred cHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Q 006368 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGL 472 (648)
Q Consensus 394 s~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al 472 (648)
|++.+.++.|. .+.+.|++.|+.+++.+. . .+.. ....+.|++|+..+..+.+.+.++| |+|+++.|+
T Consensus 354 S~e~l~~a~~~--~~~l~n~~~rl~s~l~~~----~---~~~~--~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al 422 (651)
T PTZ00399 354 SDESMDEAIEK--DKVFFNFFANVKIKLRES----E---LTSP--QKWTQHDFELNELFEETKSAVHAALLDNFDTPEAL 422 (651)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHhhc----c---cccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999888554 467899999988776541 1 1111 1124567889999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccc--------------hHHHHHHHH---Hh
Q 006368 473 KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM--------------PSFSVEVNK---QL 535 (648)
Q Consensus 473 ~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~--------------P~~s~~i~~---~L 535 (648)
..|++|++.+|.|++.. .......+..+..++..++.+|++.-..-| |. .+.+.+ .+
T Consensus 423 ~~L~eLv~~~N~yi~~~-----~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~~~~~~~~~~-i~~l~~~R~~~ 496 (651)
T PTZ00399 423 QALQKLISATNTYLNSG-----EQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPL-LEALLRFRDEV 496 (651)
T ss_pred HHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHhcccCCcchhhccccccccchhhhHHH-HHHHHHHHHHH
Confidence 99999999999999731 001122344455666667777776311100 11 111110 01
Q ss_pred C---CCC----------ccccccccccCcccccCCCCccCCCCCccCC---CCCCCCCCChHHHHHHHHHhccchhH---
Q 006368 536 N---LQP----------EKHISLCDEKGDVDRARRPWEIIPAGHKIGS---PNPLFKELKDDEVEFFRSKFAGSQAD--- 596 (648)
Q Consensus 536 ~---~~~----------~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~Lf~~i~~~~~~~~~~~~~~~~~~--- 596 (648)
. ... ...+..+| .+|+..+...|+.|.| +.+++++.+++++.+++++.+..+++
T Consensus 497 R~~a~~~~~~~~~~~~~~~~~~~~D-------~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (651)
T PTZ00399 497 RDAAKAEMKLISLDKKKKQLLQLCD-------KLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRL 569 (651)
T ss_pred HHHHHhccccccchhhhhhHHHHHH-------HHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 01123333 6676558889999976 23699999988877665444332222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccc
Q 006368 597 -RIIRAEAEAAKTAEQLKKTKIS 618 (648)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~~k~~ 618 (648)
+++++++++++++|++++++++
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~i~ 592 (651)
T PTZ00399 570 RKLKKQEEKKKKELEKLEKAKIP 592 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 2222344566677777777777
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=558.80 Aligned_cols=479 Identities=17% Similarity=0.212 Sum_probs=347.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCC-------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS------- 86 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~------- 86 (648)
+++|+||.|+||+||.+||||++| ++.+|+++||+||+|++|+|++|+|+||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t-~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFS-LSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 367999999999999999999999 56799999999999999999999999999999998652 322
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 006368 87 ------------------------------------------------------------PKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 87 ------------------------------------------------------------~~e~~~~~~~~~~~~~~~l~ 106 (648)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 12234444567789999999
Q ss_pred cccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc----------------------
Q 006368 107 ISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---------------------- 160 (648)
Q Consensus 107 i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---------------------- 160 (648)
++.| +-+.|++ |.|...|++.|.+|+++|+||++.+.+.||+.|++.++|.+++
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~ 282 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFP 282 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcch
Confidence 8876 4456777 9999999999999999999999999999999999999996432
Q ss_pred -------c---------cCCC-----------C-----------c--------------c--------cc----------
Q 006368 161 -------G---------TCPF-----------E-----------G--------------C--------NY---------- 170 (648)
Q Consensus 161 -------g---------~cp~-----------~-----------~--------------c--------~~---------- 170 (648)
+ +.|+ | + + .+
T Consensus 283 ~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~ 362 (1084)
T PLN02959 283 GKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYD 362 (1084)
T ss_pred hhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHH
Confidence 1 1111 0 0 1 00
Q ss_pred -------------C----------------------C--------C-------------CCc--------------cccc
Q 006368 171 -------------E----------------------S--------A-------------RGD--------------QCEN 180 (648)
Q Consensus 171 -------------~----------------------~--------~-------------~g~--------------~c~~ 180 (648)
+ + + +|- ..+.
T Consensus 363 L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g 442 (1084)
T PLN02959 363 LIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPE 442 (1084)
T ss_pred hCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCC
Confidence 0 0 0 010 0111
Q ss_pred c-------------------------------------CCCCCcc---------------------------ccCCCcCC
Q 006368 181 C-------------------------------------GKLLNAT---------------------------DLKDPKCK 196 (648)
Q Consensus 181 c-------------------------------------g~~l~~~---------------------------el~~~~~~ 196 (648)
+ |.+.... +-..|+|+
T Consensus 443 ~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 443 FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMS 522 (1084)
T ss_pred CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEE
Confidence 1 1100000 11247899
Q ss_pred CCCCCcEEeeccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-----
Q 006368 197 VCRNAPQIRDTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER----- 269 (648)
Q Consensus 197 ~~g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~----- 269 (648)
|||++++...++|||++++ .+++.+.+.++++.. .|+..++...+||.. ++|||||||+.||+|+|.+.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~---~P~~~~~~~~~wl~~-l~DWciSRQr~wGtpIPWd~~~~ie 598 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNL---YSDETRHGFEHTLGW-LNQWACSRSFGLGTRIPWDEQFLIE 598 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEE---ECHHHHHHHHHHHhC-CCceeecccccCCCcCCcccceeec
Confidence 9999999999999999997 789999999987654 377778888999986 89999999999999999310
Q ss_pred -----------C------------------------CCceeeeeecccchHHHhccccc--------hHHHhhcCCCCCc
Q 006368 270 -----------F------------------------KEKVFYVWFDAPIGYVSITSCYT--------NEWEQWWKNPENV 306 (648)
Q Consensus 270 -----------~------------------------~~~v~yVWfDa~~~yis~~~~~~--------~~~~~~w~~p~~~ 306 (648)
+ ...|+++||++.....+. +|+ .+|..|+ |.|
T Consensus 599 slsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~y--P~D- 673 (1084)
T PLN02959 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWY--PFD- 673 (1084)
T ss_pred cCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhC--CCe-
Confidence 0 134888999974322211 332 3566666 567
Q ss_pred ceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC
Q 006368 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (648)
Q Consensus 307 ~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~ 386 (648)
+++.|+||+++|..+.-.+..++--.-++|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++|||++..++
T Consensus 674 --l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~-kyGADalRl~la~~~~ 750 (1084)
T PLN02959 674 --LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIE-EFSADATRFALADAGD 750 (1084)
T ss_pred --EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHH-HhCchHHHHHHhhcCC
Confidence 7999999999996543222222111224678999999999999999999999999999999 7999999999998778
Q ss_pred CCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 006368 387 EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (648)
Q Consensus 387 ~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~ 466 (648)
..+|.+|+++.+.+. ...+.|++..+...+... ..+. + . ......|+++++.++.+++.+.++|++|
T Consensus 751 ~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~~--~~~~---~-~--~~~~~~D~wils~l~~~i~~v~~a~e~y 817 (1084)
T PLN02959 751 GVDDANFVFETANAA-----ILRLTKEIAWMEEVLAAE--SSLR---T-G--PPSTYADRVFENEINIAIAETEKNYEAM 817 (1084)
T ss_pred ccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhhh--cccC---C-c--ccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999876543 222333332222221110 0111 1 0 1134679999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 467 KLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 467 ~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|+.|++..+ +|...-..|.... .... ....++..++..+..||+||||+++++||+.|
T Consensus 818 ~f~~A~~~~~Yel~~~k~~yr~~~-------~~~~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 818 MFREALKSGFYDLQAARDEYRLSC-------GSGG---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred cHHHHHHHHHHHHHHhHHHHhhcc-------ccch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 9999999743 2332222222111 1111 22446677889999999999999999999988
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=530.79 Aligned_cols=458 Identities=20% Similarity=0.319 Sum_probs=362.7
Q ss_pred CCCCCCCCCCC--CC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 9 PAAPPPKLPIP--GK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 9 ~~~~~~~~~~~--~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
|++...|.+.. ++ ++|||+.+.|||||.+||||.|| |..+||++||+||+||+|+|.||+|..|+|++..|.+.|.
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~-Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~ 96 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCcccc-ccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCC
Confidence 45566677633 22 59999999999999999999999 6779999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|..++..+.+.++++++.||.++| .-..|+||+|.+.+|++|.+|+++|+||+++..+.||+.|++.|++.+|
T Consensus 97 ~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv---- 172 (814)
T COG0495 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV---- 172 (814)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccccee----
Confidence 9999999999999999999999987 4467899999999999999999999999999999999999998887554
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
++..|+|||.+|+.++-.+|||+++.|.+.|++-+..... .||.+++.+.+
T Consensus 173 ---------------------------~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~--~wPE~Vk~mq~ 223 (814)
T COG0495 173 ---------------------------IDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLAT--LWPETVKGMQR 223 (814)
T ss_pred ---------------------------ecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhcc--CCchhHHHHHH
Confidence 4456889999999999999999999999999887765432 38888888888
Q ss_pred HH------------------------------------------------------------------------------
Q 006368 244 AW------------------------------------------------------------------------------ 245 (648)
Q Consensus 244 ~~------------------------------------------------------------------------------ 245 (648)
+|
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 88
Q ss_pred --------------------------------------------------------------H-hc--------------
Q 006368 246 --------------------------------------------------------------L-KE-------------- 248 (648)
Q Consensus 246 --------------------------------------------------------------l-~~-------------- 248 (648)
+ ..
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l 383 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL 383 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE
Confidence 0 00
Q ss_pred ----------------------------------ccccceeeeccCCCcccCCcC-------------------------
Q 006368 249 ----------------------------------GLKVRCITRDLKWGVPVPLER------------------------- 269 (648)
Q Consensus 249 ----------------------------------gl~d~~IsR~~~WGi~vP~~~------------------------- 269 (648)
.++||.+||++.||.|+|.-.
T Consensus 384 inS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~ 463 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGL 463 (814)
T ss_pred eccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccC
Confidence 256899999999999999621
Q ss_pred ----------------C-------CCceeeeeecccchHHHhc----c---cc-chHHHhhcCCCCCcceEEEEeccccc
Q 006368 270 ----------------F-------KEKVFYVWFDAPIGYVSIT----S---CY-TNEWEQWWKNPENVELYQFMGKDNVP 318 (648)
Q Consensus 270 ----------------~-------~~~v~yVWfDa~~~yis~~----~---~~-~~~~~~~w~~p~~~~~i~~~GkDi~~ 318 (648)
+ +..||..|+++.+-|+-.+ . .. .+.|. ||- |.| ++++|+|++.
T Consensus 464 gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~-yW~-PVD---~yigG~ehav 538 (814)
T COG0495 464 GTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFN-YWY-PVD---LYIGGIEHAV 538 (814)
T ss_pred CCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHh-ccc-Chh---eeecchhHHH
Confidence 1 1234456777665443221 0 01 12344 454 677 7899999998
Q ss_pred hh---HhHHHHHhhhcCCCcc---cCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCc
Q 006368 319 FH---TVMFPSTLLGTGENWT---LMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (648)
Q Consensus 319 fH---~i~~pa~l~a~g~~~~---~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~ 391 (648)
.| +.||...|...|. |+ |+++++..|+++. +|+|||||+||+|+|+++++ +||+|++|+|++..+|..+|+
T Consensus 539 lHLly~rF~Hkal~d~g~-~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-~yGADt~Rl~~m~~ap~~~d~ 616 (814)
T COG0495 539 LHLLYFRFFHKALFDEGL-VPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-KYGADTVRLYIMFAAPPEQDL 616 (814)
T ss_pred HHHHHHHHHHHHhcccCc-CCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-HhCchHHHHHHHhhCChhhCC
Confidence 88 4566666666664 21 3356999999998 79999999999999999999 799999999999999999999
Q ss_pred cccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Q 006368 392 LFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK-VKLKQ 470 (648)
Q Consensus 392 ~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~-~~~~~ 470 (648)
+|+++.+..+ ..+.+.+.+++.+....... .. . .... ..+...+.++.+.+.+.++. +.++.
T Consensus 617 ~W~e~gv~g~--~rfL~r~~~l~~~~~~~~~~---------~~-~--~~~~---~~~~~~~h~~~~~v~~~~e~~~~~nt 679 (814)
T COG0495 617 EWSESGVEGA--RRFLQRVWNLVKEHLEKLVE---------EL-T--KEQG---KEDRWLLHRTIKKVTEDFEARQTFNT 679 (814)
T ss_pred CCChhhhHHH--HHHHHHHHHHHHHhhhcccc---------cc-c--chhh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 34555555555544332100 00 0 0110 23444555666777788876 88999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 471 GLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 471 al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|+..+|+|++...+|..... .+. .++.+++..+..||+||+||+|+++|+.||.
T Consensus 680 ~i~~~m~l~N~l~~~~~~~~------~~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 680 AIAALMELLNALRKYLRRTE------GDR-------KVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHHHhccc------chH-------HHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 99999999999998876532 111 4455678899999999999999999999995
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-56 Score=456.91 Aligned_cols=492 Identities=16% Similarity=0.172 Sum_probs=347.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHH--c
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAME--D 83 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~--~ 83 (648)
.+||.|++|.|..+++ +-+.++.||||+..||||||+ ||+.||++||++++ ||+|.||||++|+++||+.+|++ .
T Consensus 40 slTr~Ke~fip~~~~~-v~wY~CGpTvYD~SHmGHArs-YVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m 117 (586)
T KOG2007|consen 40 SLTRQKEVFIPNNGNK-VTWYICGPTVYDSSHMGHARS-YVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEM 117 (586)
T ss_pred ccccccceeeeCCCCe-EEEEEecCcccchhhhhhhhh-hhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhh
Confidence 4799999999987664 556677799999999999998 89999999999977 99999999999999999999972 3
Q ss_pred CCCHHHHHH---HHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCc-cccccc
Q 006368 84 NCSPKEICD---KYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKR-FLADRL 158 (648)
Q Consensus 84 g~~~~e~~~---~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~-~l~d~~ 158 (648)
+..|..+.+ .|.++|.+++..|++-. |...|.| +|...+..|++++++||+.|...+++||++..-. +|+.
T Consensus 118 ~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgK-- 193 (586)
T KOG2007|consen 118 GEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGK-- 193 (586)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhh--
Confidence 344433333 57799999999999865 8888888 9999999999999999999999999999987543 1221
Q ss_pred ccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChH
Q 006368 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQN 237 (648)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~ 237 (648)
|. |+. +.+.++. |.....++ .++ ++.-|..
T Consensus 194 ---------L~-----G~~----------~~~~~gE----g~l~ds~K--------------------R~p~DFALWKA- 224 (586)
T KOG2007|consen 194 ---------LV-----GQR----------KNLQEGE----GVLSDSRK--------------------RSPADFALWKA- 224 (586)
T ss_pred ---------hc-----Cch----------hhcccCc----CccccccC--------------------CChhhhhhhhh-
Confidence 00 000 0000000 11110000 000 0001110
Q ss_pred HHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecccc
Q 006368 238 AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV 317 (648)
Q Consensus 238 ~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~ 317 (648)
-++|.+.| ..+||-..|+|-.| ++..-..+..+..| ||.+|.|..
T Consensus 225 --------sK~gEP~W----eSPWG~GRPGWHIE--------------------CSaMas~~lG~~lD---IH~GG~DL~ 269 (586)
T KOG2007|consen 225 --------SKPGEPSW----ESPWGKGRPGWHIE--------------------CSAMASAILGSQLD---IHGGGIDLA 269 (586)
T ss_pred --------cCCCCCCC----CCCCCCCCCCceee--------------------eHHHHHHhhccccc---eecCccccc
Confidence 13466666 77999999998422 11111122222234 899999999
Q ss_pred chhHhHHHHHhhhcCC--CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 318 PFHTVMFPSTLLGTGE--NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 318 ~fH~i~~pa~l~a~g~--~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
|+|+..--|...|.-. +|. ++++++|||+++|+|||||++||||+.++|+ .|+|++||++||+ +.|.+++|||.
T Consensus 270 FPHHeNEiAQ~eA~~~~~~wV--nYflHtGhL~i~g~KMSKSLkNFiTIke~Lk-~~sp~qLRl~fl~-~~wr~~ldYs~ 345 (586)
T KOG2007|consen 270 FPHHENEIAQSEAAFDDSQWV--NYFLHTGHLTINGEKMSKSLKNFITIKEALK-KYSPRQLRLAFLL-HQWRSPLDYSD 345 (586)
T ss_pred CCCcccHHHHHHHHhcCCccc--eeEEEcCeeeeccchhhhhhccceeHHHHHH-hcCHHHHHHHHHH-HHhcCcCCchH
Confidence 9998888887777543 354 6777779999999999999999999999998 8999999999997 78999999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKT 474 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~ 474 (648)
+.|..+ ..++..+.||+.-+.++.+.. .| .....+.+.+|.+.+.....+++.|+ |+|+++.+++.
T Consensus 346 s~m~~a--~q~e~~~~~ff~~~~al~~~~--------~~---~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 346 STMEQA--LQLEKSLNNFFLDVKALLRGA--------KP---FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhcc--------ch---hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 999988 688999999999888877641 11 12345677899999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHH------------hhccchHHH---HHHHHHh---C
Q 006368 475 AMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACL------------LEPFMPSFS---VEVNKQL---N 536 (648)
Q Consensus 475 i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~l------------l~P~~P~~s---~~i~~~L---~ 536 (648)
+.+|++.+|.||.... .......+..+......+++++++. ..|++-.++ +.+-+.+ .
T Consensus 413 ~~~lvs~~N~~i~~~~----~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~ 488 (586)
T KOG2007|consen 413 IRELVSQGNAYIRESG----ERPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKK 488 (586)
T ss_pred HHHHHhhhhHHHHHhc----cccchHHHHHHHHHHHHHHHHhCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998764 0112244555666666666666654 234443333 2222222 1
Q ss_pred CCCccccccccccCcccccCCCCccCCCCCccCC--CCCCCCCCChHHHHHHHHHhccchhHHHHH--HHHHHHHHHHHH
Q 006368 537 LQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGS--PNPLFKELKDDEVEFFRSKFAGSQADRIIR--AEAEAAKTAEQL 612 (648)
Q Consensus 537 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~Lf~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 612 (648)
.+ +.+.+|| .+|+..++..|+.|++ ++.|.+.++.+++-+.+++.-.+++.+.++ .+.+++++++..
T Consensus 489 ~~--~iL~l~d-------~lR~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~ 559 (586)
T KOG2007|consen 489 VP--EILELCD-------TLRDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAEKNKDKEKSDRIREELAAKGI 559 (586)
T ss_pred hH--HHHHHhH-------HHHHhhHHHhhhHHHhCCchHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11 3344555 4565567788999976 568999998777554443322222221111 133444555666
Q ss_pred hhhccc
Q 006368 613 KKTKIS 618 (648)
Q Consensus 613 ~~~k~~ 618 (648)
.+.+++
T Consensus 560 a~~~i~ 565 (586)
T KOG2007|consen 560 ALMKIP 565 (586)
T ss_pred HhhcCC
Confidence 666666
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=503.92 Aligned_cols=363 Identities=23% Similarity=0.363 Sum_probs=270.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC------------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC------------ 85 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~------------ 85 (648)
.++++|+|++||||+||.+||||+++ ++..|+++||+||+|++|+|++|+|+||.||+.++++. |.
T Consensus 20 ~~~~~f~i~~~PPy~nG~lH~GH~~~-~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANGDLHIGHALN-KTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TTSGEEEEEE---BTSSS-BHHHHHH-HHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCCcEEEEeCCCCCCCcccHHHHHH-HHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 45778999999999999999999999 56699999999999999999999999999999999875 33
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.+.++++++.+.+++++++||++.| ..+.|.+|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 2668888999999999999998876 5677999999999999999999999999999999999999999999988
Q ss_pred cc--------------------------cCCC-----------Cc-----------------------------------
Q 006368 160 EG--------------------------TCPF-----------EG----------------------------------- 167 (648)
Q Consensus 160 ~g--------------------------~cp~-----------~~----------------------------------- 167 (648)
+. |.|+ |.
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence 62 2222 11
Q ss_pred ---ccc--------------------------------------------------CCCCCccccccCCCCC--------
Q 006368 168 ---CNY--------------------------------------------------ESARGDQCENCGKLLN-------- 186 (648)
Q Consensus 168 ---c~~--------------------------------------------------~~~~g~~c~~cg~~l~-------- 186 (648)
..+ -+..|...+.+|..-.
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence 000 0122322222222100
Q ss_pred --------------cc--ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhccc
Q 006368 187 --------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGL 250 (648)
Q Consensus 187 --------------~~--el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl 250 (648)
.. +...|+|+|||++++.+..+|||++++++++.+.+.++++... |+..+++..+||.. +
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~---P~~~~~~~~~~i~~-l 414 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFY---PESYRKRFENWIDN-L 414 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEES---SSTCHHHHHHHHHT--
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEE---cccchhhhhhhccc-c
Confidence 00 0124789999999999999999999999999999999988765 44456778899987 8
Q ss_pred ccceeeeccCCCcccCCcCC----------------------------------------------CCceeeeeecccch
Q 006368 251 KVRCITRDLKWGVPVPLERF----------------------------------------------KEKVFYVWFDAPIG 284 (648)
Q Consensus 251 ~d~~IsR~~~WGi~vP~~~~----------------------------------------------~~~v~yVWfDa~~~ 284 (648)
+|||||||+.||+|+|.+.. +..|++||||+.+.
T Consensus 415 ~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~ 494 (601)
T PF00133_consen 415 RDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLW 494 (601)
T ss_dssp -EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTC
T ss_pred ccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccCC
Confidence 99999999999999997420 24699999998877
Q ss_pred HHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCC
Q 006368 285 YVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKG 359 (648)
Q Consensus 285 yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~g 359 (648)
+++.. +++ .+|..|+ |.| +.+.|+|++++|-.+.-..-.++- +-.+.+.+++|||+. .+|+|||||+|
T Consensus 495 ~~~~~-~~~~~~~~~~~~~~--P~D---~~~~G~D~~~~W~~~~l~~~~~l~-~~~pfk~v~~hG~vld~~G~KMSKS~G 567 (601)
T PF00133_consen 495 PFAVL-GWPENDREEFEYWY--PVD---LYIEGKDQIRGWFQSSLFLSVALF-GKEPFKKVITHGFVLDEDGRKMSKSKG 567 (601)
T ss_dssp HHHHT-TSTTCSCHHHHHHS--SBS---EEEEEGGGTTTHHHHHHHHHHHHS-SSTSBSEEEEE--EEETTSSB-BTTTT
T ss_pred ccccc-ccccccchhccccC--Ccc---cccCCccchhhHHHHhHhhccccc-cCCchheeeecccccccceeecccCCC
Confidence 66553 443 4677777 567 788999999998554322222222 113568999999987 68999999999
Q ss_pred cccChhhhhhcCCCchhHHHHHhhcCCCCCCcccc
Q 006368 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (648)
Q Consensus 360 N~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs 394 (648)
|+|+|.++++ .||+|++|+|++..++..+|++||
T Consensus 568 Nvi~p~~ii~-~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 568 NVIDPEDIIE-KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp B--BHHHHHH-HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cccCHHHHHH-HhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999 799999999999767888999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=454.55 Aligned_cols=484 Identities=19% Similarity=0.274 Sum_probs=376.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHH-HHHHHc------CCCHH-----
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE-TKAMED------NCSPK----- 88 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~-~~A~~~------g~~~~----- 88 (648)
+..|.+.+ +||.||||||++. |..||+.||+-+.|.+++|+.|+|+||.||+ .+|.+. .++|.
T Consensus 58 ~~~f~L~d----anG~lhlghalnk-ILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~ 132 (937)
T KOG0433|consen 58 RVEFELKD----ANGNLHLGHALNK-ILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAK 132 (937)
T ss_pred CceEEEec----cCCCccchHHHHH-HHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHH
Confidence 34455565 9999999999996 5699999999999999999999999999999 466432 34554
Q ss_pred --HHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc---
Q 006368 89 --EICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--- 161 (648)
Q Consensus 89 --e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--- 161 (648)
.|++...+..++.|+++||..|. -+-|.+|.|...-.++|.+|+++|+||++..+++|+++..+.|++++++.
T Consensus 133 Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~n 212 (937)
T KOG0433|consen 133 ARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDN 212 (937)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcC
Confidence 46667778899999999998773 45699999999999999999999999999999999999999999998872
Q ss_pred -----------------------------------cCCC-----------------------------------------
Q 006368 162 -----------------------------------TCPF----------------------------------------- 165 (648)
Q Consensus 162 -----------------------------------~cp~----------------------------------------- 165 (648)
|.|+
T Consensus 213 H~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe 292 (937)
T KOG0433|consen 213 HQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFE 292 (937)
T ss_pred CcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhh
Confidence 2332
Q ss_pred ------------------CccccC---------------------------------------------------CCCCc
Q 006368 166 ------------------EGCNYE---------------------------------------------------SARGD 176 (648)
Q Consensus 166 ------------------~~c~~~---------------------------------------------------~~~g~ 176 (648)
.+|.|. |.+|.
T Consensus 293 ~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~ 372 (937)
T KOG0433|consen 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGC 372 (937)
T ss_pred hhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCc
Confidence 011110 22333
Q ss_pred cccccCCCCCcc------------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCC
Q 006368 177 QCENCGKLLNAT------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAG 232 (648)
Q Consensus 177 ~c~~cg~~l~~~------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~ 232 (648)
....-|..++.. ...+|+.||+..|+++|.++|||.++..++....+.+++....
T Consensus 373 yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~- 451 (937)
T KOG0433|consen 373 YTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVA- 451 (937)
T ss_pred eecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhceeC-
Confidence 333333222111 1247999999999999999999999999999999999887753
Q ss_pred CCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-------------------------------------------
Q 006368 233 SWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------------------------------------------- 269 (648)
Q Consensus 233 ~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~------------------------------------------- 269 (648)
|.+..+++..++.. .++||||||+.||+|||.-.
T Consensus 452 --P~~~~~rl~~~~~~-R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~ 528 (937)
T KOG0433|consen 452 --PGDSDLRLKQLVTT-RPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEV 528 (937)
T ss_pred --CcchHHHHHHHHcC-CCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhh
Confidence 55556678888875 89999999999999999610
Q ss_pred -----------CCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecccc--chhHhHHHHHhhhcCCCcc
Q 006368 270 -----------FKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWT 336 (648)
Q Consensus 270 -----------~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~--~fH~i~~pa~l~a~g~~~~ 336 (648)
....+++||||+....-+.. +...+ ..+| ++..|.|+. +|.+.+-..+ |... ..
T Consensus 529 ~e~~~~a~ey~kgtDimDVWFDSGssWs~v~-~~~~~------~~aD---v~LEG~DQ~rGWFQSsLLTsv--A~q~-kA 595 (937)
T KOG0433|consen 529 REIPDIASEYKKGTDIMDVWFDSGSSWSAVL-DNERE------HVAD---VYLEGVDQFRGWFQSSLLTSV--AVQN-KA 595 (937)
T ss_pred cccchhHHHhccCCceeeeEecCCCcceeec-CCCCC------ccee---eEEecchhcchHHHHHHHHHH--HHhc-cC
Confidence 02368889999754433221 10000 0234 899999996 4554332221 2211 24
Q ss_pred cCceEEeeceee-cCCccccccCCcccChhhhhhcC------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHH
Q 006368 337 LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTN------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNN 409 (648)
Q Consensus 337 ~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 409 (648)
|.+.+++|||.. -+|.|||||+||||+|+.+++ + ||+|.||||.+. +....|+...+..+.++ .+-..+
T Consensus 596 PYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K 671 (937)
T KOG0433|consen 596 PYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIK 671 (937)
T ss_pred CchheeeeeeEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHH
Confidence 679999999975 789999999999999999997 6 999999999995 67779999999999998 788999
Q ss_pred HhHHHHHHHHhhhCCCCCCCCCC---CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HHH
Q 006368 410 LGNFINRVLSFIAKPPGQGYGSI---VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE--GNA 484 (648)
Q Consensus 410 l~N~~~R~~~~~~k~~~~~~~~~---~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~--~N~ 484 (648)
+.|.++.+++.+.+ +++. +|. .+..-+|+.++..+.++.+++.+.|++|+|++++..+..+... .|.
T Consensus 672 ~R~T~RfllGnl~d-----~~~~~~~~p~---~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~ 743 (937)
T KOG0433|consen 672 FRNTFRFLLGNLQD-----FDGKQVKFPL---KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAF 743 (937)
T ss_pred HHhHHHHHhhcccc-----cCCccccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHH
Confidence 99999999999887 4333 332 2345568999999999999999999999999999999998744 899
Q ss_pred HHHhhhhhhhc-cCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 485 YLQESQFWKLY-KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 485 yi~~~~pw~l~-k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
|++..+..... +.+.....++-.++..++..+...++||+|++++++|+.|-..
T Consensus 744 YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 744 YFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 99988765433 2244555666777778888999999999999999999998743
|
|
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=462.93 Aligned_cols=496 Identities=18% Similarity=0.255 Sum_probs=386.7
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----C-C-----C----
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----N-C-----S---- 86 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g-~-----~---- 86 (648)
...|.|+.|||+|.|.+|||||.+.. ..|+++||.||.||.|.|+.|+|..|..++.-.++. | + .
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~a-iqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F 152 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVA-IQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEF 152 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHH-HHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHH
Confidence 45688999999999999999999965 499999999999999999999999999877665542 2 3 2
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc
Q 006368 87 ---PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 87 ---~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (648)
..++-+++...+.+++++||.++|. -.-|.|+...+.|.+.|.+|++.|.||++.+-+.||+.-.+.++|-+|+.
T Consensus 153 ~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 153 LKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred HHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 2345566777899999999999873 33499999999999999999999999999999999999999999987752
Q ss_pred --------------------------------cC---------CC------------CccccC-----------------
Q 006368 162 --------------------------------TC---------PF------------EGCNYE----------------- 171 (648)
Q Consensus 162 --------------------------------~c---------p~------------~~c~~~----------------- 171 (648)
.| |. ..+.|.
T Consensus 233 ~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lP 312 (995)
T KOG0432|consen 233 VEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLP 312 (995)
T ss_pred eecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccc
Confidence 01 10 001111
Q ss_pred -----------------------------------------CCCCccccccCCC------------------------CC
Q 006368 172 -----------------------------------------SARGDQCENCGKL------------------------LN 186 (648)
Q Consensus 172 -----------------------------------------~~~g~~c~~cg~~------------------------l~ 186 (648)
...|.....||.. +.
T Consensus 313 iI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995)
T KOG0432|consen 313 IICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995)
T ss_pred eeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccC
Confidence 2244444455521 01
Q ss_pred ccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccC
Q 006368 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVP 266 (648)
Q Consensus 187 ~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP 266 (648)
+..++-|.|.|+|+.+|..-.+|||++.+....+..+.+++.... ..|+.....-..|+.. .+|||||||+.||-.||
T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~-i~P~~~~k~w~~W~~~-i~DWCiSRQLWWGHrIP 470 (995)
T KOG0432|consen 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLE-ILPEFHEKEWYRWLEN-IRDWCISRQLWWGHRIP 470 (995)
T ss_pred CCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeE-ECchHHHHHHHHHHhh-ccccchhhhhhhccccc
Confidence 112456899999999999999999999999888888888865532 2466666666788876 89999999999999999
Q ss_pred CcC-----------------------------C----------CCceeeeeecccchHHHhccccch---HHHhhcCCCC
Q 006368 267 LER-----------------------------F----------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPE 304 (648)
Q Consensus 267 ~~~-----------------------------~----------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~ 304 (648)
.+. + +..|+++||.+.+-.+|.. |||+ ++..|+|.
T Consensus 471 Ay~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~l-GWP~~t~d~~~fyP~-- 547 (995)
T KOG0432|consen 471 AYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTL-GWPEETKDFKNFYPL-- 547 (995)
T ss_pred eeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhc-CCccccccHHhcCCc--
Confidence 721 0 2478999999988888764 8985 68888864
Q ss_pred CcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhc-------------
Q 006368 305 NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDT------------- 370 (648)
Q Consensus 305 ~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~------------- 370 (648)
. +--.|.||++|+..-.-.+-+-+.-. .|++.++.||.+. -+|+|||||+||||+|.|+++.
T Consensus 548 s---llETG~DILfFWVaRMvmLg~kLtG~-lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~g 623 (995)
T KOG0432|consen 548 S---LLETGHDILFFWVARMVMLGLKLTGE-LPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623 (995)
T ss_pred h---hhhcCchHHHHHHHHHHHhhhhhcCC-CCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcC
Confidence 3 45589999998655432221222212 4679999999995 8999999999999999999861
Q ss_pred ----------------CC-------CchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCC
Q 006368 371 ----------------NI-------PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427 (648)
Q Consensus 371 ----------------~~-------~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~ 427 (648)
.| |.|+|||.|++...-+.|++++...+... ..++|+++|..++++..+.+
T Consensus 624 NLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcNKlWNa~rF~l~~lg~---- 697 (995)
T KOG0432|consen 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCNKLWNATRFALQRLGE---- 697 (995)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHHHHHHHHHHHHHhccc----
Confidence 13 89999999998888889999999988764 78999999999999887554
Q ss_pred CCCCCCCCC-C--CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhhhhhccCChhhH
Q 006368 428 GYGSIVPDA-N--GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDQPSC 502 (648)
Q Consensus 428 ~~~~~~p~~-~--~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~ 502 (648)
+| +|.. . .....-.|+|++..+..+++.+.+.|+.++|..|...+..+. ..|..|++..+|-... .+....
T Consensus 698 ~~---~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~-~~~~~~ 773 (995)
T KOG0432|consen 698 NF---VPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWG-DSEALA 773 (995)
T ss_pred CC---CCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC-CcHHHH
Confidence 22 2221 1 111112799999999999999999999999999999999886 6699999999984322 233445
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 503 ~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
..+..++..++.....||+||||++++++|++|-
T Consensus 774 ~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 774 YEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 5556777778888889999999999999999984
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=460.95 Aligned_cols=382 Identities=16% Similarity=0.183 Sum_probs=274.6
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc----------chHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY----------GTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~----------G~ki 76 (648)
-+||+|++|.|..++ ++-+.++.||||+.+||||+|+ ||.+|+++||+|..||+|.||+|++|+ |+||
T Consensus 8 tlt~~ke~f~p~~~~-~v~mYvCGpTvy~~~HiGhar~-~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi 85 (490)
T PRK14536 8 TLGRQQEEFQPIEHG-HVRLYGCGPTVYNYAHIGNLRT-YVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM 85 (490)
T ss_pred cCCCCeeccccCCCC-ceEEEeeCCccCCCcccchhHH-HHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH
Confidence 478999999997543 3444566689999999999998 889999999999999999999855555 9999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|.+++++|.+.|.+++++|||.++.+. +..++|++.+++++++|+++|++|+..+++|||+..
T Consensus 86 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~------ 158 (490)
T PRK14536 86 VKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT------ 158 (490)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc------
Confidence 9999999999999999999999999999999996544 333699999999999999999999999999999853
Q ss_pred ccccccCCCCccccCCCCCccccccCCC--CCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKL--LNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGS 233 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~--l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~ 233 (648)
|| .||++ .+.+++.. |..++ ... .++++ ++.-
T Consensus 159 ------~~---------------~YG~Ls~~~~~~l~~------g~~v~----------~~~--------~K~np~DFaL 193 (490)
T PRK14536 159 ------FP---------------SYGSLASAAVEDLQA------GARIE----------HDT--------NKRNPHDFVL 193 (490)
T ss_pred ------cc---------------chhhhcCCCHHHhhc------CCcCC----------CCC--------CCCCchhchh
Confidence 22 23321 11111111 11111 000 00111 1111
Q ss_pred CChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEe
Q 006368 234 WSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 234 ~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~G 313 (648)
|.. ..+++...++++.+||.+.|+|- + +++..-.+|.....| ||.+|
T Consensus 194 WK~----------~~~~~~~~~~W~SpWG~GRPGWH-------------I-------ECsaMs~~~lg~~~D---IH~GG 240 (490)
T PRK14536 194 WFT----------RSKFENHALTWDSPWGRGYPGWH-------------I-------ECSAMSMKYLGEQCD---IHIGG 240 (490)
T ss_pred ccc----------ccCCCCCCCcccCCCCCCCCChH-------------H-------HHHHHHHHHcCCcee---EEecc
Confidence 211 11234445678999999999872 2 222222334432233 99999
Q ss_pred ccccchhHhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcc
Q 006368 314 KDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~ 392 (648)
+|++|||+..++|+..++ |. +++++++++|||+++|+|||||+||+|++.|+++..++++++||+|++ .++.++++
T Consensus 241 ~DliFPHHeneiAqs~a~~g~--~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~ 317 (490)
T PRK14536 241 VDHIRVHHTNEIAQCEAATGK--PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLA 317 (490)
T ss_pred ccCCCcchhhHHHHHHHhcCC--CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCC
Confidence 999999999999999885 43 456778888999999999999999999999999844999999999997 78899999
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQG 471 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~a 471 (648)
||++.|.++. ...++|.|++.++....... ..+................+...+..+.+.+.+|| |+|+++.|
T Consensus 318 Fs~e~l~~a~--~~~~rl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 318 FSWEALKTAK--AARRSLVRRVARVVDAARAT----TGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCHHHHHHHH--HHHHHHHHHHHHHHHhhhcc----cccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 9999999884 34566666666654322110 00000000000000000011223455678899999 89999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 472 LKTAMSISSEGNA 484 (648)
Q Consensus 472 l~~i~~l~~~~N~ 484 (648)
+..|+++++.+|.
T Consensus 392 l~~l~~~~~~~n~ 404 (490)
T PRK14536 392 LSELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998885
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=463.35 Aligned_cols=376 Identities=14% Similarity=0.105 Sum_probs=284.5
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-++|+|++|.|..+ +-++||| .|||||.+||||+|+ ||.+|+++||+|..||+|.||+|+||||+||+.+|+++|+
T Consensus 65 Tltr~ke~f~P~~~~~v~~Y~C--GpTvYd~~HIGhaR~-~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~ 141 (557)
T PLN02946 65 TMSRKKELFKPKVEGKVGMYVC--GVTAYDLSHIGHARV-YVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGE 141 (557)
T ss_pred CCCCCeeccccCCCCceeEEEe--CCccCCCCccccchh-hHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCC
Confidence 46899999999754 3455644 689999999999998 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
+|++++++|.+.|.++++.|||. +.+++|+.++|++.+++++++|+++|++|++.+++|||++.-.-|
T Consensus 142 ~~~ela~~y~~~f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y----------- 209 (557)
T PLN02946 142 DPISLSRRYCEEFLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY----------- 209 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh-----------
Confidence 99999999999999999999998 667778778999999999999999999999999999998753322
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (648)
|... ++ +..++. .|..++..+ -+++| ++.-|...
T Consensus 210 ---------G~Ls---~~--~l~~l~------~g~rv~~~~------------------~K~np~DFaLWK~~------- 244 (557)
T PLN02946 210 ---------GKLS---GR--KLEDNR------AGERVAVDS------------------RKKNPADFALWKAA------- 244 (557)
T ss_pred ---------hhcC---CC--ChhHhh------cCCCCCccc------------------ccCCccccceeccC-------
Confidence 2110 00 001111 122221100 01111 12224321
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++|..-| +.+||...|+|- .+++..-.+|...+.| ||.+|.|++|+|+-..
T Consensus 245 --k~ge~~W----~SPWG~GRPGWH--------------------IECSaMs~~~lG~~~D---IH~GG~DL~FPHHENE 295 (557)
T PLN02946 245 --KEGEPFW----DSPWGPGRPGWH--------------------IECSAMSAAYLGHSFD---IHGGGMDLVFPHHENE 295 (557)
T ss_pred --CCCCCCc----cCCCCCCCCcHH--------------------HHHHHHHHHHcCCCee---EeccccccCCCcccch
Confidence 1233334 779999999883 2222223344433344 8999999999999988
Q ss_pred HHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 325 PSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 325 pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
-|+..++ |.. +-+++++||||+++|+|||||+||+|++.|+++ .|++|++||||++ ..+.++++||++.+.++
T Consensus 296 iAQsea~~g~~--~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~-~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a-- 369 (557)
T PLN02946 296 IAQSCAACCDS--NISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID-LYHPLALRLFLLG-THYRSPINYSDVQLESA-- 369 (557)
T ss_pred HHHHHHHhCCC--CCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH-hcCccceeeeeec-cCCCCCcEecHHHHHHH--
Confidence 8888764 433 336777789999999999999999999999998 7999999999997 67889999999999887
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~ 482 (648)
.....++.+++.|+...+.+. ... .... . ....+...+..+.+.+.+|| |+|+++.|+..|+++++.+
T Consensus 370 ~~~l~~l~~~~~~~~~~l~~~----~~~-~~~~--~----~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~ 438 (557)
T PLN02946 370 SERIFYIYQTLHDCEESLQQH----DST-FEKD--S----VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTI 438 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhh----ccc-cccc--c----cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 455678889999987665431 100 0000 0 01112334556778999999 8999999999999999999
Q ss_pred HHHHHh
Q 006368 483 NAYLQE 488 (648)
Q Consensus 483 N~yi~~ 488 (648)
|.+++.
T Consensus 439 N~~~~~ 444 (557)
T PLN02946 439 NDLLHT 444 (557)
T ss_pred HHHhhh
Confidence 999965
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=452.90 Aligned_cols=364 Identities=18% Similarity=0.201 Sum_probs=277.2
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-+||++++|.|..+ +.++|||. |||||.+||||+|+ ||.+|+++||+|++||+|.|++|+||||+||+.+|+++|+
T Consensus 8 tl~~~~~~f~p~~~~~v~~yvcg--Ptvy~~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~ 84 (463)
T PRK00260 8 TLTRQKEEFKPLEPGKVKMYVCG--PTVYDYAHIGHARS-FVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGE 84 (463)
T ss_pred CCCCceeecccCCCCcceEEEeC--CccCCCcccccchh-HHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCC
Confidence 36899999999754 45677665 66889999999998 7889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCc-ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i-~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
+|+++++++.+.|++++++||| .+|.|.|+| .|.+.+++++++|.++|++|+++++++||++.-.-|.
T Consensus 85 ~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg--------- 153 (463)
T PRK00260 85 SIKELTERYIAAFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYG--------- 153 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccc---------
Confidence 9999999999999999999999 568888888 6999999999999999999999999999987543222
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (648)
+ |+..++.+. ..|..++. .. .+.++ ++.-|...
T Consensus 154 ------------------~-ls~~~~~~~---~~~~~~~~----------~~--------~K~~~~DF~Lwk~~------ 187 (463)
T PRK00260 154 ------------------K-LSGRNLDEL---QAGARVEV----------AE--------EKRDPLDFALWKAA------ 187 (463)
T ss_pred ------------------c-CCCCCHHHH---hccCcCCc----------cc--------CCCCccccceecCC------
Confidence 1 111110000 00111110 00 01111 12223321
Q ss_pred HHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
+.|..-| +.+||...|+|. .+|+..-.++...|.| ||.+|+|++|+|+..
T Consensus 188 ---~~~~~~w----~s~~g~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~DlifpHh~n 237 (463)
T PRK00260 188 ---KPGEPSW----ESPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGADLIFPHHEN 237 (463)
T ss_pred ---CCCCCCC----CCCCCCCCCChh--------------------HHHHHHHHHhcCCCcc---eecCccccCCCchHh
Confidence 1122233 568999999883 1222222223333455 899999999999988
Q ss_pred HHHHhhh-cCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 324 FPSTLLG-TGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 324 ~pa~l~a-~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.-|+-.+ .|. ++++.++++|||+++|+|||||+||+|++.|+++ .|++|++|||+++ +++.++++|+++.+.++
T Consensus 238 eiaqs~a~~g~--p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~-~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a- 312 (463)
T PRK00260 238 EIAQSEAATGK--PFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-KYDPEVLRFFLLS-AHYRSPLNFSEEALEQA- 312 (463)
T ss_pred HHHHHHHhcCC--CcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-HcCchHhHHHHHh-CCCCCCCccCHHHHHHH-
Confidence 8777555 342 3445555559999999999999999999999998 7999999999997 67789999999998887
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~ 481 (648)
....+++.|+++++.. . ..+.++...+..+.+.+.++| |+|+++.|+..|+++++.
T Consensus 313 -~~~~~rl~~~~~~~~~---~-------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~ 369 (463)
T PRK00260 313 -KKALERLYNALAETAL---G-------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELARE 369 (463)
T ss_pred -HHHHHHHHHHHHHhhh---c-------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3557788887777631 0 112356677788889999999 699999999999999999
Q ss_pred HHHHHHh
Q 006368 482 GNAYLQE 488 (648)
Q Consensus 482 ~N~yi~~ 488 (648)
.|+|++.
T Consensus 370 ~n~~~~~ 376 (463)
T PRK00260 370 INRALET 376 (463)
T ss_pred HHHHhhc
Confidence 9999866
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=441.25 Aligned_cols=459 Identities=20% Similarity=0.270 Sum_probs=359.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.++++ ||.+.+|||+|.+||||.|. |..+|+++||.||+||+|+..||||.+|+|-+.+|.+.|++|+.+...+.+.+
T Consensus 55 ~sk~K-YiLsMFPYPSG~LHiGHvRV-YTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 55 KSKKK-YILSMFPYPSGALHIGHVRV-YTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred cCCCc-eEEEecCCCCCcccccceEE-EEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 34555 99999999999999999998 66699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++||++|| .-+.|.+|+|.+..|++|.+|+++|++|+.+..+.|||.+.+.|+..+|.
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD---------------- 196 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVD---------------- 196 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhc----------------
Confidence 999999999986 67889999999999999999999999999999999999999999976652
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH-----------
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW----------- 245 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------- 245 (648)
.++++||+|.+|+.+.-.|||++.++|.++|++-++..+ .||. ++++..+|
T Consensus 197 --------------~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~---~W~~-vk~mQrnWIG~~~G~el~F 258 (876)
T KOG0435|consen 197 --------------ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP---EWPE-VKDMQRNWIGRCDGAELMF 258 (876)
T ss_pred --------------ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhh---hhhh-HHHHHHhhcccccceEEEE
Confidence 234689999999999999999999999999999998654 6887 88888888
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 259 ~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v 338 (876)
T KOG0435|consen 259 PLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYV 338 (876)
T ss_pred EeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechh
Confidence
Q ss_pred ----------------------------------------------------------------------------Hhcc
Q 006368 246 ----------------------------------------------------------------------------LKEG 249 (648)
Q Consensus 246 ----------------------------------------------------------------------------l~~g 249 (648)
+...
T Consensus 339 ~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~k 418 (876)
T KOG0435|consen 339 LDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYK 418 (876)
T ss_pred ccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecch
Confidence 0123
Q ss_pred cccceeeeccCCCcccCCcC--------------------------------------------------CCCceeeeee
Q 006368 250 LKVRCITRDLKWGVPVPLER--------------------------------------------------FKEKVFYVWF 279 (648)
Q Consensus 250 l~d~~IsR~~~WGi~vP~~~--------------------------------------------------~~~~v~yVWf 279 (648)
|+||-||||+.||.|||.-- .+..|+++|+
T Consensus 419 LkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFv 498 (876)
T KOG0435|consen 419 LKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFV 498 (876)
T ss_pred hhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhh
Confidence 77999999999999999610 1568999999
Q ss_pred cccchHHHhcc-c-----cchHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhhhcCCCc--ccCceEEeece--
Q 006368 280 DAPIGYVSITS-C-----YTNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLLGTGENW--TLMKTISVTEY-- 346 (648)
Q Consensus 280 Da~~~yis~~~-~-----~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~a~g~~~--~~p~~~~~hg~-- 346 (648)
|+.+-|+-.+- . +...-+.+|- |.| ++++|+++.-.|. -+|.-+|...|.-- .|++.++..|.
T Consensus 499 DSsWYYlRylDpkN~e~~~d~a~a~k~M-PVD---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~ 574 (876)
T KOG0435|consen 499 DSSWYYLRYLDPKNPEEPFDKAKAKKNM-PVD---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVR 574 (876)
T ss_pred ccceeeEeecCCCCcccccchhhhhccC-cee---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhccc
Confidence 99999875431 1 1123455665 677 8999999987773 45666777666410 11121211111
Q ss_pred ----------------------------ee--------cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCC
Q 006368 347 ----------------------------LN--------YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (648)
Q Consensus 347 ----------------------------l~--------~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d 390 (648)
+. +-=+|||||++|+|+|.+.++ .||+|.+|+|++..+|..++
T Consensus 575 G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~-~yG~D~tRl~ilf~ap~~~~ 653 (876)
T KOG0435|consen 575 GKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL-EYGVDTTRLYILFAAPPRDP 653 (876)
T ss_pred ceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-HhCchHHHHHHHhhCCcccc
Confidence 11 112599999999999999998 79999999999999999999
Q ss_pred ccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006368 391 TLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLK 469 (648)
Q Consensus 391 ~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~ 469 (648)
++++.+.+... ..+...++++++++...-.. +..-+.+.+. .......+.+.+..+..+.++.+++ ..+.++
T Consensus 654 ~nW~es~i~Gi--~rwl~riw~l~~~~~~ar~~--g~~~d~~~~t---d~~dae~~kl~~~~n~fi~~vt~~~e~~~slN 726 (876)
T KOG0435|consen 654 INWNESAIPGI--KRWLQRIWALVSQILQARDD--GKAKDLKKLT---DGFDAETRKLKETYNFFIKQVTEHYEVLFSLN 726 (876)
T ss_pred cccccccchhH--HHHHHHHHHHHHHHHHHHhc--CCcccccccc---cccchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999988876 46777777777776654211 0011111111 1123345688999999999999999 467799
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 470 QGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 470 ~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
.|+..+|.|.+..-+-..... .. ++ . ....+..+.++|+|++|+.|+++|..|+..
T Consensus 727 taIS~~m~ltN~l~~a~k~~~----~h-~~-~-------~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 727 TAISDMMGLTNALKKALKIVL----VH-SP-E-------FERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHhhhhhh----hc-Ch-H-------HHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 999999998875433222211 10 11 1 113566788999999999999999999943
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=447.42 Aligned_cols=377 Identities=18% Similarity=0.173 Sum_probs=277.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc----------chHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY----------GTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~----------G~ki 76 (648)
-+||+|++|.|. ++-++| ++.||||+.+||||+|+ +|.+|+++||+|.+||+|.||+|++|+ |+||
T Consensus 8 Tltr~ke~f~p~-~~v~mY--~CGpTVYd~~HiGh~r~-~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKI 83 (481)
T PRK14534 8 TKTKDLSELKNF-SDVKVY--ACGPTVYNYAHIGNFRT-YIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKV 83 (481)
T ss_pred cCCCCeeecccC-CceEEE--eCCCCCCCCCCccchhH-HHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHH
Confidence 478999999997 444445 66689999999999997 789999999999999999997777777 9999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|++++++|.+.|.++++.|||.++.|++| .++|++.+++++++|.++|++|+..+++|||+.+-
T Consensus 84 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~----- 157 (481)
T PRK14534 84 VKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF----- 157 (481)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc-----
Confidence 999999999999999999999999999999999998886 47999999999999999999999999999999862
Q ss_pred ccccccCCCCccccCCCCCccccccCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSW 234 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~ 234 (648)
|+|....| .++.+ +.|. |..+. +.. .++++ ++.-|
T Consensus 158 -----------~~YG~ls~------------~~l~~l~~~~--~~~v~----------~~~--------~K~np~DFaLW 194 (481)
T PRK14534 158 -----------KSYGQMAG------------INLNDFKDMS--VSRVE----------IDK--------SKRNKSDFVLW 194 (481)
T ss_pred -----------cchhhhcC------------CCHHHHhhhc--cCcCC----------ccc--------CCCCcccchhc
Confidence 22211111 11111 1111 11111 100 01111 11112
Q ss_pred ChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccch-HHHhhcCCCCCcceEEEEe
Q 006368 235 SQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-EWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 235 ~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~-~~~~~w~~p~~~~~i~~~G 313 (648)
. ...++++..++++.+||...|+|- .+++. ..+.+|. ..| ||.+|
T Consensus 195 K----------~~~~~~~~~~~w~spWG~GrPgWH--------------------iECsam~~~~lg~-~~D---IH~GG 240 (481)
T PRK14534 195 F----------TNSKFKDQEMKWDSPWGFGYPSWH--------------------LECAAMNLEYFKS-TLD---IHLGG 240 (481)
T ss_pred C----------cCCcCCCCCCeecCCCCCcCCcHH--------------------HHHHHHHHHHcCC-cce---EEecc
Confidence 1 123456667889999999999883 22322 2333443 234 89999
Q ss_pred ccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
+|++|||+..++|+.+++. ..+++++++++|||+++|+|||||+||+|++.|+++..++++++|||+++ .++.++++|
T Consensus 241 ~DliFPHHene~Aqs~a~~-g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~F 318 (481)
T PRK14534 241 VDHIGVHHINEIAIAECYL-NKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKF 318 (481)
T ss_pred cccCCCcchhHHHHHhhhc-CCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCC
Confidence 9999999999999998853 23567888888999999999999999999999999845999999999996 788899999
Q ss_pred cHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Q 006368 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGL 472 (648)
Q Consensus 394 s~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al 472 (648)
|++.+.++. ...+++.+.+.++...+.. .++..... ..... .......+.+.+.+|| |+|+++.|+
T Consensus 319 s~e~l~~a~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~---~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 319 TFNNLKACK--IARENMLNKLTYFYSSLDQ-----FDLNLLNK---DLENI---EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHhhhh-----cccccccc---ccccc---hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999873 3445555555544333321 00000000 00000 0011223456889999 899999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 473 KTAMSISSEGNAY 485 (648)
Q Consensus 473 ~~i~~l~~~~N~y 485 (648)
..|+++++..|..
T Consensus 386 ~~l~~~~k~~n~~ 398 (481)
T PRK14534 386 ALLWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998863
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-52 Score=451.35 Aligned_cols=362 Identities=17% Similarity=0.183 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-+||+|++|.|.. ++.++|+|. |||||.+||||+|+ ||.+|+++||+|++||+|.|++|+||||+||+.+|+++|+
T Consensus 6 tlt~~~e~f~p~~~~~v~~yvcg--ptvy~~~HiGhar~-~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~ 82 (465)
T TIGR00435 6 TLTRQKEEFEPLVQGKVKMYVCG--PTVYDYCHIGHART-AIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGE 82 (465)
T ss_pred CCCCCeeccccCCCCcceEEEec--CccCCCcccccchH-HHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCC
Confidence 4789999999975 445667665 58999999999998 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccc-cCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFDNF-GRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D~f-~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|+++++++.+.|.+++++|||++|.| .|+| .|...+++++++|.++|++|+.. +.+|||+.|...|.
T Consensus 83 ~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG-------- 152 (465)
T TIGR00435 83 SVYEVSERFIEAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYG-------- 152 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhc--------
Confidence 999999999999999999999999885 5666 89999999999999999999998 99999998754322
Q ss_pred CCCccccCCCCCccccccCCCC--CccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLL--NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQ 240 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l--~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 240 (648)
++- +..++.. |..++. .. .+++| ++.-|...
T Consensus 153 -------------------~ls~~~~~~~~~------~~~~~~----------~~--------~K~~p~DF~Lwk~~--- 186 (465)
T TIGR00435 153 -------------------KLSKQDLDQLEA------GARVDV----------DE--------AKRNKLDFVLWKSS--- 186 (465)
T ss_pred -------------------cCCCCCHHHHhc------ccccCc----------cc--------ccCCCCCceeeCCC---
Confidence 110 0001100 111110 00 01122 12223211
Q ss_pred HHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 241 ~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
++|...| +.+||...|+|- .+|+..-.++...+.| ||.+|.|++++|
T Consensus 187 ------~~~~~~w----~spwG~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~Dl~fpH 233 (465)
T TIGR00435 187 ------KEGEPKW----DSPWGKGRPGWH--------------------IECSAMNDKYLGDQID---IHGGGVDLIFPH 233 (465)
T ss_pred ------CCCCCCC----cCCCCCCCCCcH--------------------hHHHHHHHHhcCCCce---eeccccccccch
Confidence 1222233 678999999883 1232222223333445 899999999999
Q ss_pred HhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHH
Q 006368 321 TVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (648)
Q Consensus 321 ~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~ 399 (648)
..+..|+..++ |. +++++++++|||+++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++||++.+.
T Consensus 234 hene~aqs~a~~g~--~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~-~~~~dalR~~ll~-~~~~~~l~fs~~~l~ 309 (465)
T TIGR00435 234 HENEIAQSEAAFGK--QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK-NYDPEILRYFLLS-VHYRSPLDFSEELLE 309 (465)
T ss_pred HHHHHHHHHHhcCC--CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-HCCHHHHHHHHHh-CCCCCCCccCHHHHH
Confidence 99999988774 43 4567777779999999999999999999999999 7999999999997 567899999999999
Q ss_pred HHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006368 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSI 478 (648)
Q Consensus 400 ~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l 478 (648)
++ ....++|.|+++++...... .. ..+ .. +......+.+.+.+|| |+|+++.|+..|+++
T Consensus 310 ~a--~~~~~rl~~~~~~~~~~~~~----~~--~~~----~~-------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~ 370 (465)
T TIGR00435 310 AA--KNALERLYKALRVLDTTLAY----SG--NQS----LN-------KFPDEKEFEARFVEAMDDDLNTANALAVLFEL 370 (465)
T ss_pred HH--HHHHHHHHHHHHHHHhhhcc----cc--ccc----cc-------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 88 45688899998887543221 00 000 00 0111234557788899 899999999999999
Q ss_pred HHHHH
Q 006368 479 SSEGN 483 (648)
Q Consensus 479 ~~~~N 483 (648)
++.+|
T Consensus 371 ~~~~n 375 (465)
T TIGR00435 371 AKSIN 375 (465)
T ss_pred HHHhh
Confidence 99999
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=439.24 Aligned_cols=357 Identities=14% Similarity=0.112 Sum_probs=262.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
-++|+|++|.| .++-++|||+|.|| +.+||||+|+ ||.+|+++||+|++||+|.||+|+||||+||+.+|+++|++
T Consensus 23 tlt~~~~~f~p-~~~v~~YvCGpTvY--~~~HIGhart-~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t 98 (411)
T TIGR03447 23 TADGQVRPVEP-GPEAGMYVCGITPY--DATHLGHAAT-YLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVD 98 (411)
T ss_pred CCCCCeeeccC-CCcceEEEeCCccC--CCcccccchH-HHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCC
Confidence 47899999999 77778888886655 9999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEceE----eeeeccCcCcccccccccc
Q 006368 87 PKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g 161 (648)
|++++++|++.|.++++.|||. +|.|+||| +|.+.+++++++|.++|+||+..+ ++||+++.-.-|
T Consensus 99 ~~ela~~y~~~f~~d~~~Lni~~~d~~~RaT--e~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y------- 169 (411)
T TIGR03447 99 WRELGTSQIDLFREDMEALRVLPPRDYIGAV--ESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF------- 169 (411)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCCC--CCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhcc-------
Confidence 9999999999999999999986 89999999 558999999999999999999886 799987753221
Q ss_pred cCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHH
Q 006368 162 TCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQ 240 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 240 (648)
|... +. +.+++....- +..++.. +.-++++ ++.-|...
T Consensus 170 -------------G~Ls---~~--~~~~~~~~~~---~~~~~~~-----------------~~~K~~p~DFaLWK~~--- 208 (411)
T TIGR03447 170 -------------GYES---GY--DRATMLELFA---ERGGDPD-----------------RPGKRDPLDALLWRAA--- 208 (411)
T ss_pred -------------cccc---CC--CHHHHHhhhc---ccccCcc-----------------cccCCCCcccceeCCC---
Confidence 1100 00 0000000000 0000000 0001111 12223321
Q ss_pred HHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 241 ~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
+.|..-| +.+||...|+|- .+++..-.++...+.| ||..|.|++|+|
T Consensus 209 ------~~~e~~w----~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---ih~GG~DLifpH 255 (411)
T TIGR03447 209 ------REGEPSW----DSPFGPGRPGWH--------------------IECSAIATNRLGAGFD---IQGGGSDLIFPH 255 (411)
T ss_pred ------CCCCCCc----cCCCCCCCChhH--------------------HHHHHHHHHHcCCcee---cccCcccccccc
Confidence 1122233 778999999883 1222222334433344 899999999999
Q ss_pred HhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHH
Q 006368 321 TVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (648)
Q Consensus 321 ~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~ 399 (648)
+.+.-|+-.++ |. -++++.+++.|||+++|+|||||+||+|++.++++.++++|++|||+++ +++.++++||++.+.
T Consensus 256 heneiaq~~A~~g~-~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 256 HEFSAAHAEAATGV-RRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLA 333 (411)
T ss_pred hHhHHHHHHHhcCC-CCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHH
Confidence 99988887774 33 1344666666999999999999999999999998745899999999995 788899999999998
Q ss_pred HHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006368 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSI 478 (648)
Q Consensus 400 ~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l 478 (648)
++ ....+++.+++.++. . . .+..+...+.++| |+|+++.|+..|+++
T Consensus 334 ~a--~~~l~rl~~~~~~~~----~---------------~-----------~~~~~~~~~~~al~dDln~p~a~~~l~~~ 381 (411)
T TIGR03447 334 EA--EARLARWRAALAATD----A---------------P-----------DATDLIARLRQHLANDLDTPAALAAVDNW 381 (411)
T ss_pred HH--HHHHHHHHHHHhhcc----c---------------c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 86 344445555443210 0 0 1122345677889 899999999999999
Q ss_pred HHHHHH
Q 006368 479 SSEGNA 484 (648)
Q Consensus 479 ~~~~N~ 484 (648)
++..|.
T Consensus 382 ~~~~n~ 387 (411)
T TIGR03447 382 AAAALS 387 (411)
T ss_pred HHHHHh
Confidence 988775
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=429.22 Aligned_cols=350 Identities=12% Similarity=0.077 Sum_probs=254.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+-++|||. |||||++||||+|+ ||.+|+++||+|++||+|.||+|+||||+||+.+|+++|++|+++|+++++.|.+
T Consensus 9 ~v~~YvCG--pTvY~~~HIGh~r~-~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVCG--ITPYDATHLGHAAT-YLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEecC--CCCCCCCccchhHH-HHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34566655 56669999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCc-ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceE----eeeeccCcCcccccccccccCCCCccccCCCCC
Q 006368 101 VYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (648)
Q Consensus 101 ~~~~l~i-~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (648)
+++.||| ++|.|.|||+ |.+.+++++++|.++|++|+..+ ++||+++.-.- ||
T Consensus 86 d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~--------------------YG 143 (384)
T PRK12418 86 DMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ--------------------FG 143 (384)
T ss_pred HHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhh--------------------cc
Confidence 9999997 8899999995 69999999999999999999998 89998875322 12
Q ss_pred ccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHHHHhcccccce
Q 006368 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGLKVRC 254 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (648)
..- +. +.+++....- +..++.. ..-++++ ++.-|... ++|..-|
T Consensus 144 ~ls---~~--~~~~~~~~~~---~~~~~~~-----------------~~~K~~p~DFaLWK~~---------~~~~~~w- 188 (384)
T PRK12418 144 YES---GY--DRATMLELFA---ERGGDPD-----------------RPGKRDPLDALLWRAA---------RPGEPSW- 188 (384)
T ss_pred ccc---CC--CHHHHHhhhc---ccccCcc-----------------cccCCCcccceeeccC---------CCCCCcc-
Confidence 100 00 0000000000 0000000 0001111 12223321 1122233
Q ss_pred eeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC
Q 006368 255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (648)
Q Consensus 255 IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~ 334 (648)
+.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+.+..|+..++.-.
T Consensus 189 ---~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~ 242 (384)
T PRK12418 189 ---PSPFGPGRPGWH--------------------IECSAIALNRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGE 242 (384)
T ss_pred ---cCCCCCCCChhH--------------------HHHHHHHHHHcCCCcc---cccCccccccchhHhHHHHHHHhcCC
Confidence 779999999883 1222223344444455 89999999999999999988774322
Q ss_pred cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 335 ~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
-++++.+++.|+|.++|+|||||+||+|+|.++++.+++++++|||++ .+++.++++||++.+.++. ....++.|++
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~--~~l~r~~~~~ 319 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAE--ARLARWRAAA 319 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHH--HHHHHHHHHH
Confidence 123344444489999999999999999999999864477779999999 4788899999999998873 3344455544
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
.+. . . . .+..+.+.+.++| |+|+++.|+..|+++++.+|.|+...
T Consensus 320 ~~~-----~------------~--~-----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 320 ALP-----A------------G--P-----------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred hcc-----c------------c--c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 321 0 0 0 1123457889999 89999999999999999999999664
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-51 Score=443.54 Aligned_cols=363 Identities=17% Similarity=0.173 Sum_probs=271.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
-++|+|++|.|..++ ++-+.++.||||+.+||||+|+ +|.+|+++||+|+.||+|.||+|+||||+||+.+|+++|++
T Consensus 233 Tltr~ke~f~P~~~~-~V~mYvCGPTVYd~~HIGHaRt-~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~s 310 (699)
T PRK14535 233 TLTRQKEPFAPIDPE-NVRMYVCGMTVYDYCHLGHARV-MVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGET 310 (699)
T ss_pred CCCCCeeccccCCCC-ceEEEecCCcCCCCCcccchhH-HHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCC
Confidence 368999999997643 4455566789999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccCCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
|.+++++|.+.|.++++.|||.++.| +|+..+|+..+++++++|.++|++|+.. +++|||+++-.-
T Consensus 311 p~ela~~y~~~F~~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~------------ 377 (699)
T PRK14535 311 IGELTARFIQAMHEDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA------------ 377 (699)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc------------
Confidence 99999999999999999999999877 5656799999999999999999999874 589999985322
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (648)
||... |. +..++. .|..++.. . .+.++ ++.-|...
T Consensus 378 --------YG~LS---~~--~~~~l~------~g~rve~d----------~--------~Krnp~DFaLWK~s------- 413 (699)
T PRK14535 378 --------YGQLS---GK--SLDDLR------AGERVEVD----------G--------FKRDPLDFVLWKAA------- 413 (699)
T ss_pred --------ccccc---CC--ChHHhc------CCCccccc----------c--------ccCCccccceeccC-------
Confidence 22110 00 011111 12222210 0 01122 22234321
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++|.+-| +.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+..-
T Consensus 414 --k~Gep~W----~SPWG~GRPGWH--------------------IECSAMs~~~LG~~~D---IHgGG~DLiFPHHENE 464 (699)
T PRK14535 414 --KAGEPAW----ESPWGNGRPGWH--------------------IECSAMSENLFGDTFD---IHGGGADLQFPHHENE 464 (699)
T ss_pred --CCCCCCc----cCCCCCCCCchH--------------------HHHHHHHHHHcCCcce---eECCccccCCCCCccH
Confidence 1233334 779999999883 2333333344443344 8999999999998888
Q ss_pred HHHhhhc-CCC-------------c-ccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCC
Q 006368 325 PSTLLGT-GEN-------------W-TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (648)
Q Consensus 325 pa~l~a~-g~~-------------~-~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~ 389 (648)
-|+..|+ |.+ . ++-++++++|||+++|+|||||+||+|++.++++ .|++|++|||+++ +++.+
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe-~ygpdalRl~lLs-shYRs 542 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLK-QYDPEVVRFFILR-AHYRS 542 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHH-hCCHHHHHHHHHc-CCCCC
Confidence 8887663 321 0 1235777779999999999999999999999998 7999999999997 67889
Q ss_pred CccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccH
Q 006368 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKL 468 (648)
Q Consensus 390 d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~ 468 (648)
+++||++.+.++ ....+++.+++.++.. . . + .+...+..+.+.+.+|| |+|++
T Consensus 543 pL~fS~e~Le~A--k~~l~Rl~~~l~~~~~---~------~---~------------~~~~~l~~~~~~f~~AL~DDlnt 596 (699)
T PRK14535 543 PLNYSDAHLDDA--KGALTRLYTTLKNTPA---A------E---F------------MLSENVNDYTRRFYAAMNDDFGT 596 (699)
T ss_pred CCCcCHHHHHHH--HHHHHHHHHHHHhhhh---c------c---c------------hhhhhHHHHHHHHHHHHhhccCh
Confidence 999999999887 4445555555544310 0 0 0 01123345667899999 89999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006368 469 KQGLKTAMSISSEGNAY 485 (648)
Q Consensus 469 ~~al~~i~~l~~~~N~y 485 (648)
+.|+..|+++++.+|.+
T Consensus 597 p~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 597 VEAVAVLFELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999976
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=424.10 Aligned_cols=366 Identities=17% Similarity=0.189 Sum_probs=278.4
Q ss_pred CCCCCCCCCCCCCCC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPGK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
.+||.|++|+|..+. -++| .+.||||+.+||||+|+ +|..|+++||++.+||.|.||+|+||+++||+.+|.++|.
T Consensus 7 Tltr~ke~F~P~~~~~V~mY--vCGpTVYd~~HIGhaRt-~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~ 83 (464)
T COG0215 7 TLTRQKEEFVPIDPGKVKMY--VCGPTVYDYAHIGHART-YVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGL 83 (464)
T ss_pred cCccceecccCCCCCeEEEE--ecCCccCCccccccCcc-eehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCC
Confidence 478999999997644 4455 55689999999999998 7889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
++.+++++|.+.|.+++++|||. +|.+.|.| +|...+.+++++|.++|++|.. .+.++|+++.-.-|..-
T Consensus 84 ~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~L------ 155 (464)
T COG0215 84 SIREVAERYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKL------ 155 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhh------
Confidence 99999999999999999999995 69999988 9999999999999999999998 68999998764433210
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQAT 242 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 242 (648)
.|+ .+.+++. .|..++..+. +++| ++.-|...
T Consensus 156 -----------------S~~-~~le~l~------~gar~~~~~~------------------Krnp~DFvLWK~s----- 188 (464)
T COG0215 156 -----------------SGR-DSLEELQ------AGARVEVDEE------------------KRNPLDFVLWKAA----- 188 (464)
T ss_pred -----------------cCC-CChhHHh------hccccccccc------------------cCCchhheeeccC-----
Confidence 000 0000000 0111110000 1111 11123211
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
+.|.+.| +++||...|+|- .+++..-..+..+..| ||.+|.|++|+|+.
T Consensus 189 ----k~gEp~W----~SPWG~GRPGWH--------------------IECSaM~~~~LG~~~D---IHgGG~DLiFPHHE 237 (464)
T COG0215 189 ----KPGEPSW----DSPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGSDLIFPHHE 237 (464)
T ss_pred ----CCCCCCC----CCCCCCCCCchh--------------------HHHHHHHHHHhCCCcc---eecCcccccCCCcc
Confidence 2345555 889999999983 1222222333333344 89999999999999
Q ss_pred HHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 323 MFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 323 ~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.--|+-.++.-..++-++++++|||+++|+|||||+||||++.|+++ .|++++|||+|++ +.+.++++||++.+.++
T Consensus 238 NEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~-~~~p~~lR~~lls-~HYR~pl~fsee~L~~A- 314 (464)
T COG0215 238 NEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK-KYDPEVLRLFLLS-SHYRSPLDFSEELLEEA- 314 (464)
T ss_pred cHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-hcCHHHHHHHHHH-HHhCCccccCHHHHHHH-
Confidence 98898887654223447777779999999999999999999999998 7999999999997 78899999999999998
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~ 481 (648)
.....+|.|++.++...... . ... .+.+...++.++| |+|+++.|+..+.++++.
T Consensus 315 -~~~l~rl~~~~~~~~~~~~~------------~---~~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~ 370 (464)
T COG0215 315 -KKALERLYNALRRLRDLAGD------------A---ELA--------DLKEFEARFREALDDDFNTPKALAVLFELAKE 370 (464)
T ss_pred -HHHHHHHHHHHHHHHhhccc------------c---ccc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 55678888888876532221 0 000 3344556688999 899999999999999999
Q ss_pred HHHHHHh
Q 006368 482 GNAYLQE 488 (648)
Q Consensus 482 ~N~yi~~ 488 (648)
.|..++.
T Consensus 371 ~~~~~~~ 377 (464)
T COG0215 371 INRLLEE 377 (464)
T ss_pred Hhhhhhc
Confidence 8776654
|
|
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=416.25 Aligned_cols=499 Identities=21% Similarity=0.312 Sum_probs=374.4
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-----------
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~----------- 85 (648)
.+++++|....+||.+.|.||-||+...+| .|+..||.-+.||.|--..|||+||.|++-...+. |+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI 112 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGI 112 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhH
Confidence 457778888999999999999999998876 99999999999999999999999999998666442 44
Q ss_pred -----CHHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccc
Q 006368 86 -----SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (648)
Q Consensus 86 -----~~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (648)
.++.++-+|+.+.+....+|| |+||+=++|..|.+.+.|.++|++|+++|++|++..-..|+..|.+.|+.-+
T Consensus 113 ~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFE 192 (1070)
T KOG0434|consen 113 DKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFE 192 (1070)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchh
Confidence 367788899999999999999 7788888999999999999999999999999999999999999999997643
Q ss_pred ccc----------------------------cCCC---------------------------------------------
Q 006368 159 VEG----------------------------TCPF--------------------------------------------- 165 (648)
Q Consensus 159 v~g----------------------------~cp~--------------------------------------------- 165 (648)
... |.|+
T Consensus 193 a~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 193 AQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred cccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 210 3332
Q ss_pred -------------CccccC-----------------------------------CCCCc------------------ccc
Q 006368 166 -------------EGCNYE-----------------------------------SARGD------------------QCE 179 (648)
Q Consensus 166 -------------~~c~~~-----------------------------------~~~g~------------------~c~ 179 (648)
.|-.|+ ++.|. .|+
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 000010 01110 010
Q ss_pred --c-----------cCCCC------------------Cccc--cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH
Q 006368 180 --N-----------CGKLL------------------NATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (648)
Q Consensus 180 --~-----------cg~~l------------------~~~e--l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (648)
. .|+++ -... ..+|.|||+.+|+.++..++||.+.....++|++-..
T Consensus 353 VDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~ 432 (1070)
T KOG0434|consen 353 VDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM 432 (1070)
T ss_pred cccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccc
Confidence 0 11111 1111 2479999999999999999999999988888776655
Q ss_pred cCCCCCCCChHHH-HHHHHHHhcccccceeeeccCCCcccCCcCC-----------------------------------
Q 006368 227 NMSVAGSWSQNAI-QATHAWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------- 270 (648)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~----------------------------------- 270 (648)
+..+. |.+++ ++..+||++ -+||.|||.+.||.|+|.|-.
T Consensus 433 ~t~WV---P~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~it 508 (1070)
T KOG0434|consen 433 KTHWV---PQNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHIT 508 (1070)
T ss_pred ccccC---ChhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCcee
Confidence 54432 44444 467899987 789999999999999998721
Q ss_pred ------------CCceeeeeecccc-hHHHhccccc----hHHHhhcCCCCCcceEEEEecccc--chhHhHHHHHhhhc
Q 006368 271 ------------KEKVFYVWFDAPI-GYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGT 331 (648)
Q Consensus 271 ------------~~~v~yVWfDa~~-~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~--~fH~i~~pa~l~a~ 331 (648)
-..|++.||++.. -|-+. .|| +.|++-+ |+| +-..|-|+. +|.+..--+.++
T Consensus 509 Ips~~gkg~l~Rv~eVfDCWFESGSMPYAq~--HyPFenk~~fe~~f--Pad---FIaEGlDQTRGWFYTL~VlsT~L-- 579 (1070)
T KOG0434|consen 509 IPSKKGKGVLHRVSEVFDCWFESGSMPYAQR--HYPFENKEEFEENF--PAD---FIAEGLDQTRGWFYTLLVLSTAL-- 579 (1070)
T ss_pred cccCCCCcceehhhhHhhhhhccCCCcchhh--cCCccchHHHhhcC--chH---hhhhccccccchhhHHHHHHHHH--
Confidence 0247778998643 23322 333 3455545 445 455788887 465543322222
Q ss_pred CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC--CCCCccccHHHHHHHhhHHHHH
Q 006368 332 GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP--EVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 332 g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~--~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
...+++++++++|.++ -||+|||||++|.-+|..+++ +||+|+||+||+. +| ....+.|+++.+.+++ +++.-
T Consensus 580 -F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLIn-SPVvraE~LkFkeeGVrevv-k~v~l 655 (1070)
T KOG0434|consen 580 -FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLIN-SPVVRAENLKFKEEGVREVV-KDVLL 655 (1070)
T ss_pred -cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeeec-CccccccccccchhhHHHHH-Hhhhh
Confidence 2235779999999986 799999999999999999998 8999999999996 54 3678999999999987 45555
Q ss_pred HHhHHHHHHHHhhhC---CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHH
Q 006368 409 NLGNFINRVLSFIAK---PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNA 484 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k---~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~-~N~ 484 (648)
-..|.+.+....... ..+..| .++......+-+|+|+.+..+.++.-+++.|+.|++..++-.++.++.. +|.
T Consensus 656 PW~NsyrF~~qn~~~~~~~~g~~f---~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNw 732 (1070)
T KOG0434|consen 656 PWYNSYRFLVQNAALLKKETGKDF---VFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNW 732 (1070)
T ss_pred hhhHHHHHHHHHHHHhccccCCcc---ccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhh
Confidence 556666665554332 111111 1111112345689999999999999999999999999999999999965 999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|+.-++--.........+..++.++.++|..+..+|+||.|++++-||+.|..
T Consensus 733 YiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 733 YIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred heehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 99765532111123356778899999999999999999999999999998874
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=358.92 Aligned_cols=293 Identities=18% Similarity=0.190 Sum_probs=196.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHH
Q 006368 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY 94 (648)
Q Consensus 15 ~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~ 94 (648)
|.|..++ ++-+.++.||||+.+||||+|+ ||.+|+++||++..||+|.||+|++|+++||+.+|+++|+++.+++++|
T Consensus 1 F~p~~~~-~v~~Y~CGPTVYd~~HiGhaR~-~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y 78 (300)
T PF01406_consen 1 FKPLNPG-KVRMYVCGPTVYDYAHIGHART-YVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRY 78 (300)
T ss_dssp ---SCTT-EEEEEEEEEBTTS--BHHHHHH-HHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHH
T ss_pred CcCCCCC-eEEEEcCCCCCCCCCCCcceee-eeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHH
Confidence 4565332 4444456689999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccCCCCccccCC
Q 006368 95 HVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPFEGCNYES 172 (648)
Q Consensus 95 ~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~ 172 (648)
.+.|.+++++|||.. +.+.|.| +|...+.+++++|+++|++|... +.+||+++.-.-
T Consensus 79 ~~~f~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~------------------- 137 (300)
T PF01406_consen 79 EEEFFEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPD------------------- 137 (300)
T ss_dssp HHHHHHHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTT-------------------
T ss_pred HHHHHHHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccc-------------------
Confidence 999999999999987 7888888 89999999999999999999999 999999874221
Q ss_pred CCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHH---HHHHcCC-CCCCCChHHHHHHHHHHhc
Q 006368 173 ARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLE---EYINNMS-VAGSWSQNAIQATHAWLKE 248 (648)
Q Consensus 173 ~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~---~~~~~~~-~~~~~~~~~~~~~~~~l~~ 248 (648)
+|. + + +.. ++.....-. +.-+.++ ++.-|... +.
T Consensus 138 -YG~-------L-s------------~~~------------~~~l~~~~~~~~~~~K~~p~DFaLWK~~---------~~ 175 (300)
T PF01406_consen 138 -YGK-------L-S------------NQD------------LEDLEAGARVEVDYEKRNPRDFALWKAA---------KP 175 (300)
T ss_dssp -TTT-------T-T------------T-S------------HHHHHHCHHHTT-TTSSSTT-EEEEEE-----------T
T ss_pred -ccc-------c-c------------ccc------------hhhHHhhhhcccccccCCCcceeeeecc---------cc
Confidence 111 0 0 000 000000000 0001111 11112211 11
Q ss_pred ccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHh
Q 006368 249 GLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (648)
Q Consensus 249 gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l 328 (648)
+. ++-+.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+..--|+.
T Consensus 176 ~e----~~w~spwG~GRPGWH--------------------iECsam~~~~lG~~~D---IH~GG~DL~FPHHENEiAqs 228 (300)
T PF01406_consen 176 GE----PSWDSPWGKGRPGWH--------------------IECSAMSMKYLGDTFD---IHGGGIDLIFPHHENEIAQS 228 (300)
T ss_dssp TS------B--TTSSEEE-HH--------------------HHHHHHHHHHHTTSEE---EEEEEGGGTTTHHHHHHHHH
T ss_pred cC----CcccCCCccCcCcee--------------------eehHHHHHHHcCCCce---EEccccccCCCCccchHHHH
Confidence 22 334678999999872 1222222333333334 89999999999999988888
Q ss_pred hhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 329 ~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.|+.-. ++.+++++.|||+++|+|||||+||+|+++|+++ +|+++++||+|++ +.+.++++||++.+.++-
T Consensus 229 ~a~~g~-~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~-~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 229 EAATGK-PFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLK-KYSPDALRLFLLS-THYRKPLNFSEENLEEAK 299 (300)
T ss_dssp HHHHSS--SEEEEEEE--EEETTCE--TTTT---BHHHHHT-TS-HHHHHHHHHT-S-TTS-EEE-HHHHHHHH
T ss_pred HHhhCc-hHHHHHHHHHHHhhcCccccccCCCEEEHHHHhh-cCCHHHHHHHHhc-CCCCCccccCHHHHHHhc
Confidence 775322 2336666669999999999999999999999998 7999999999997 788999999999998863
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=325.05 Aligned_cols=207 Identities=20% Similarity=0.162 Sum_probs=171.8
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-++|++++|.|.. ++.++|+|.|. |||++||||+|+ |+.+|+++||+|++|++|+|++|+||||+||+.+|+++|+
T Consensus 5 t~~~~~~~~~p~~~~~~~~y~~gpt--~y~~~HiGH~r~-~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~ 81 (213)
T cd00672 5 TLTRQKEEFVPLNPGLVTMYVCGPT--VYDYAHIGHART-YVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGL 81 (213)
T ss_pred CCCCceeeeecCCCCCceEEEeCCc--cCCCcccccchh-HHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCC
Confidence 3688999999864 45568877755 558999999997 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
+|+++++++++.|+++++.|||++ |.|+|| |. ..
T Consensus 82 ~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-----------------------------Wh-~e--------------- 116 (213)
T cd00672 82 SWKEVADYYTKEFFEDMKALNVLPPDVVPRV-----------------------------WH-IE--------------- 116 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------------------------hh-HH---------------
Confidence 999999999999999999999999 999999 32 11
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA 244 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (648)
|. .+...
T Consensus 117 ---c~----------------------------------------------------------------------am~~~ 123 (213)
T cd00672 117 ---CS----------------------------------------------------------------------AMAMK 123 (213)
T ss_pred ---HH----------------------------------------------------------------------HHHHH
Confidence 10 01111
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++. .|.| ||..|.|++++|..++
T Consensus 124 ~lg------------------------------------------------------~~~d---ih~~G~Dl~fpH~~~~ 146 (213)
T cd00672 124 YLG------------------------------------------------------ETFD---IHGGGVDLIFPHHENE 146 (213)
T ss_pred HcC------------------------------------------------------CCcc---EEeecCCCCcChHHHH
Confidence 111 0234 8999999999999999
Q ss_pred HHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcccc
Q 006368 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (648)
Q Consensus 325 pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs 394 (648)
.++..+..-. +.++.+++.|++.++|+|||||+||+|++.|+++ .+++|++|||+++ .++.++++|+
T Consensus 147 ~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~-~~~~da~R~~~l~-~~~~~~l~f~ 213 (213)
T cd00672 147 IAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK-KYDPEVLRLALLS-SHYRSPLDFS 213 (213)
T ss_pred HHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHH-HcCHHHHHHHHHh-CCcCCCCCCC
Confidence 9888774322 3456666669999999999999999999999998 7999999999997 4567898886
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.11 Aligned_cols=338 Identities=15% Similarity=0.139 Sum_probs=253.1
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
.++++.|+.+.|||||++||||+|+ ++.+|+++|++|+.||+|.++.|+||+|++|...|...+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~-~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRS-AVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHH-HHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999 567999999999999999999999999999999999988899999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEE-EceEeeeeccCcCcccccccccccCCCCccccCCCCCccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI-ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy-~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (648)
+++++|||.+|.|.++++..|...+++++++|.++|++| +.++..|++.. .|..+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~~~---------------------- 243 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFGDD---------------------- 243 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhCCC----------------------
Confidence 999999999999999998888899999999999999999 76665554321 11100
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
+.-+..+..
T Consensus 244 --------------------~~~vl~ksd--------------------------------------------------- 252 (507)
T PRK01611 244 --------------------KDRVLIKSD--------------------------------------------------- 252 (507)
T ss_pred --------------------CCeEEEECC---------------------------------------------------
Confidence 000111110
Q ss_pred cCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccC
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p 338 (648)
+.. +|+-..+.|.- ..+.+ .| ++|+++|.|+..+-...+ +.+.++|.. ++
T Consensus 253 -------------G~~--~Y~t~Dia~~~------~k~~~-----~d-~~i~V~g~~q~~hf~~~~-~~~~~lg~~--~~ 302 (507)
T PRK01611 253 -------------GTY--TYFTRDIAYHL------YKFER-----FD-RVIYVVGADHHGHFKRLK-AALKALGYD--PD 302 (507)
T ss_pred -------------CCc--cchHHHHHHHH------HHHhh-----cC-EEEEEECCChHHHHHHHH-HHHHHcCCC--cc
Confidence 111 11111111110 01111 12 357888888864333333 566777753 33
Q ss_pred c-eEEee---ceee-cCCccccccCCcccChhhhhhcCCCc----------------hhHHHHHhhcCCCCCCccccHHH
Q 006368 339 K-TISVT---EYLN-YESGKFSKSKGIGVFGNDAKDTNIPV----------------EVWRYYLLTNRPEVSDTLFTWAD 397 (648)
Q Consensus 339 ~-~~~~h---g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~----------------d~lR~~ll~~~~~~~d~~fs~~~ 397 (648)
. .++.| |++. -+|+|||||+||+|++.|++++.++. |++||++++. ...+|++|+|+.
T Consensus 303 ~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~ 381 (507)
T PRK01611 303 ALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDL 381 (507)
T ss_pred cceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHH
Confidence 3 44555 6665 37889999999999999999833888 9999999975 456999999999
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 006368 398 LQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMS 477 (648)
Q Consensus 398 ~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~ 477 (648)
+.+..++... ++.+.+.|+.+++++... .+..+... ...++.+++|+..+..+.+.+.+++++++++.++..+.+
T Consensus 382 ~~~~~~~~~~-yvqYa~aR~~sil~k~~~---~~~~~~~~-~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~ 456 (507)
T PRK01611 382 ALSFEGNNPP-YVQYAHARICSILRKAAE---AGIDLLLA-LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYE 456 (507)
T ss_pred HHhhcCCCcH-HHHHHHHHHHHHHHhhhc---cCcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8765433333 888889999999987211 01111101 112567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006368 478 ISSEGNAYLQES 489 (648)
Q Consensus 478 l~~~~N~yi~~~ 489 (648)
|++.+|.|++..
T Consensus 457 la~~f~~fY~~~ 468 (507)
T PRK01611 457 LAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHC
Confidence 999999999865
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=310.75 Aligned_cols=477 Identities=20% Similarity=0.312 Sum_probs=336.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCC-----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS----- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~----- 86 (648)
.++++||+|-|.||.||.+||||+.+ .--.|+..-|.|++|++|+|.+|..+.|.||...|.+. |.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~Fs-lSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFS-LSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred cccCceeEeccccccCceeeccceee-hhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 46778999999999999999999998 56799999999999999999999999999998888543 211
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHhhcCccc
Q 006368 87 ---------------------------------------------------------PKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 87 ---------------------------------------------------------~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
|..+...+...-.++++++|...
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 22222333344567788888777
Q ss_pred c---cccCCC-chHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc---cccCCC-----------------
Q 006368 110 D---NFGRTS-TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV---EGTCPF----------------- 165 (648)
Q Consensus 110 D---~f~rT~-~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v---~g~cp~----------------- 165 (648)
| .|+.|. +|.|-..|++-|.+|.+.|.|..+..-.-||+.+++...|..- +|.-|.
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 7 488774 7999999999999999999999999999999999998877542 121110
Q ss_pred -------------------------------------Ccc-----------------------------------ccC--
Q 006368 166 -------------------------------------EGC-----------------------------------NYE-- 171 (648)
Q Consensus 166 -------------------------------------~~c-----------------------------------~~~-- 171 (648)
+.| |++
T Consensus 280 ~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~i 359 (1080)
T KOG0437|consen 280 SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLI 359 (1080)
T ss_pred cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhc
Confidence 000 000
Q ss_pred ------------------------------------------------------------------------CCCCcccc
Q 006368 172 ------------------------------------------------------------------------SARGDQCE 179 (648)
Q Consensus 172 ------------------------------------------------------------------------~~~g~~c~ 179 (648)
..+||.|.
T Consensus 360 Ga~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~a 439 (1080)
T KOG0437|consen 360 GAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAA 439 (1080)
T ss_pred CCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhH
Confidence 12444332
Q ss_pred c--cCCC--CCcc-----------------------------------------cc------------CCCcCCCCCCCc
Q 006368 180 N--CGKL--LNAT-----------------------------------------DL------------KDPKCKVCRNAP 202 (648)
Q Consensus 180 ~--cg~~--l~~~-----------------------------------------el------------~~~~~~~~g~~~ 202 (648)
. |..+ -+|. +| ..++.+|+|...
T Consensus 440 e~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeC 519 (1080)
T KOG0437|consen 440 EVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDEC 519 (1080)
T ss_pred HHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCce
Confidence 0 1110 0000 11 135788999999
Q ss_pred EEeeccceeeec--hhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC------CCCce
Q 006368 203 QIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------FKEKV 274 (648)
Q Consensus 203 ~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~------~~~~v 274 (648)
++..+.|||++. +.|+....+-++.+..+..-..+....+.+||. .|..||+..-|..+|.|. ..+.+
T Consensus 520 iVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~----~wacsRsyGLGTrlPWD~qyLvESLSDST 595 (1080)
T KOG0437|consen 520 IVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLG----QWACSRSYGLGTRLPWDEQYLVESLSDST 595 (1080)
T ss_pred EEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHH----hhhhhccccCCCCCCCcHHHHHHhcchhH
Confidence 999999999997 567888888888776432223344455677864 699999999999999874 34555
Q ss_pred eeeeec---------------------------ccchHHHhccccc--------------hHHHhhcCCCCCcceEEEEe
Q 006368 275 FYVWFD---------------------------APIGYVSITSCYT--------------NEWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 275 ~yVWfD---------------------------a~~~yis~~~~~~--------------~~~~~~w~~p~~~~~i~~~G 313 (648)
||.-|- ..++|+.....++ .+|.-|+ |.| +.+.|
T Consensus 596 IYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~Y--PiD---lrvsG 670 (1080)
T KOG0437|consen 596 IYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFY--PID---LRVSG 670 (1080)
T ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhccc--cee---eeecc
Confidence 653221 1234443221111 2465555 567 68899
Q ss_pred ccccchh--------HhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC
Q 006368 314 KDNVPFH--------TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (648)
Q Consensus 314 kDi~~fH--------~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~ 385 (648)
||.+.-| ..+|| .-. .|+.+.++|||.++++|||||.|||.|.++.++ +||+|..|+.|+-.+
T Consensus 671 KDLi~NHLtfflynHvAl~~------~k~--WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-KFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 671 KDLIPNHLTFFLYNHVALFP------EKK--WPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-KFGADGTRLALADAG 741 (1080)
T ss_pred ccccccceeEeeeehhhhcc------ccc--CccceeeCceEEecchhhccccCCeeeHHHHHH-HhCccceeeeeeccc
Confidence 9998665 55555 223 569999999999999999999999999999998 899999999999877
Q ss_pred CCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 006368 386 PEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465 (648)
Q Consensus 386 ~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~ 465 (648)
.-..|.||.++...++ +-.|.+.+.-+..++... +. +- .+ ....-.|+.+.+.++.++..-.++++.
T Consensus 742 D~veDANF~ea~AnAa-----ILRLyt~~ew~eEm~~~~-----s~-Lr-tG-p~~~FaDrvf~nemN~~i~~t~~aye~ 808 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAA-----ILRLYTYVEWIEEMCENR-----SS-LR-TG-PASTFADRVFENEMNALIAKTERAYED 808 (1080)
T ss_pred CCcccchhHHhcccHH-----HHHHHHHHHHHHHHHhhH-----Hh-hc-cC-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7678999988765433 344555666666665531 11 10 01 112256888999999999999999999
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 466 VKLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 466 ~~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
..++.|+..-+ ++...-..|-.... ..-.. .+++..+.+-+.||+||.||+|+-||+.++.+
T Consensus 809 ~~fk~aLK~Gfyd~qaArD~Yrel~g-------~~mh~----dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~ 871 (1080)
T KOG0437|consen 809 TLFKDALKYGFYDLQAARDMYRELCG-------EGMHR----DLVFRFIETQTLLLAPICPHLAEYIWRTVLKK 871 (1080)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhc-------ccccH----HHHHHHHHHHHHHHhccchHHHHHHHHHhccC
Confidence 99999998765 55544444433321 11111 23344667888999999999999999988754
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=302.52 Aligned_cols=270 Identities=19% Similarity=0.262 Sum_probs=191.6
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc------------------chHHHHHHHHc
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~------------------G~ki~~~A~~~ 83 (648)
.+++||||+ ||||.|||||+++ ++.+|+++||+|++|++|.|++|+||| |.|+...+...
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e-~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFRE-VITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHH-HHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 468999999 5999999999998 789999999999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 84 g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
|+.+ +|++++.+.|++.|+.|||++|.|.+|....+....+.++..|.+++.|..--.+.-=-+..++++|
T Consensus 97 g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P-------- 167 (353)
T cd00674 97 GCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYP-------- 167 (353)
T ss_pred CCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCcee--------
Confidence 9987 9999999999999999999999777777777779999999999999997521111000012233333
Q ss_pred CCCccccCCCCCccccccCCCCCcc---c----cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCCh
Q 006368 164 PFEGCNYESARGDQCENCGKLLNAT---D----LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQ 236 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~---e----l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 236 (648)
+-..|++||+.-.+. + -+...| .||+..+..-...
T Consensus 168 ----------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g--------------------------- 209 (353)
T cd00674 168 ----------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTG--------------------------- 209 (353)
T ss_pred ----------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCC---------------------------
Confidence 334677777432111 0 012234 2555443110000
Q ss_pred HHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccc
Q 006368 237 NAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 237 ~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
+ | .+.|-+ .|+..|... ..| +-++|+|+
T Consensus 210 ~-----------~--------KL~Wr~---------------------------dW~~rW~~l---~Vd---~E~~GkDh 237 (353)
T cd00674 210 R-----------G--------KLTWRV---------------------------DWPMRWAIL---GVD---FEPFGKDH 237 (353)
T ss_pred C-----------c--------ccCCCC---------------------------Cchhhhhhc---CCC---EEeeCccc
Confidence 0 0 112222 122222111 233 67899999
Q ss_pred cch---hHhHHHHHhh-hcCCCcccCceEEeeceeecCCc-cccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCc
Q 006368 317 VPF---HTVMFPSTLL-GTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (648)
Q Consensus 317 ~~f---H~i~~pa~l~-a~g~~~~~p~~~~~hg~l~~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~ 391 (648)
... +.... +++. .+|.+ +| ..++|||++++|. |||||+||+|++.|+++ .+++|++|||+++......|+
T Consensus 238 ~~~ggs~~~~~-~i~~~ilg~~--~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~-~~~~dalR~~~l~~~~~~~~i 312 (353)
T cd00674 238 ASAGGSYDTGK-EIAREIFGGE--PP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLE-VAPPEVLRYLYARRKNPEKHI 312 (353)
T ss_pred cccccHHHHHH-HHHHHHhCCC--CC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCC
Confidence 754 43332 3344 56643 45 4488999998876 99999999999999999 699999999999855367899
Q ss_pred cccHHH
Q 006368 392 LFTWAD 397 (648)
Q Consensus 392 ~fs~~~ 397 (648)
+|+++.
T Consensus 313 ~Fd~~~ 318 (353)
T cd00674 313 GFDLDI 318 (353)
T ss_pred CcChhH
Confidence 999853
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=306.09 Aligned_cols=345 Identities=16% Similarity=0.177 Sum_probs=249.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH---H---------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM---E--------------- 82 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~---~--------------- 82 (648)
++++.|..+.|||+|++||||+|++ +.+|+++|+++..||+|.-.--+.|.|..+-.-+. +
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~-~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNA-IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHH-HHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 5679999999999999999999995 66999999999999999866666666554432220 0
Q ss_pred -------------------------------cCCC-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 83 -------------------------------DNCS-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 83 -------------------------------~g~~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
.|-. .+.+++...+.|++++++|||.||.|....+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 0100 1344455667899999999999998876666677778999
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEee
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~ 206 (648)
+++.|.++|++|++ +..|.+.+. .|+ .+
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~~-----------------------~~d-----------------------~~----- 297 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLTL-----------------------FGD-----------------------KD----- 297 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEccc-----------------------ccC-----------------------CC-----
Confidence 99999999999976 666643210 000 00
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHH
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yi 286 (648)
.|+.|-|. ++.. +++-..+.|.
T Consensus 298 --------------------------------------------~~~vl~ks------------DGt~--~Y~t~DiA~~ 319 (566)
T TIGR00456 298 --------------------------------------------KDRVLQKS------------DGTY--LYLTRDIAYH 319 (566)
T ss_pred --------------------------------------------CCeEEEEC------------CCCc--eechhhHHHH
Confidence 01111110 1111 2222223332
Q ss_pred HhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChh-
Q 006368 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGN- 365 (648)
Q Consensus 287 s~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~- 365 (648)
.. .+.+ ..| ++|.++|.|+..+-..++ +.++++|++ +|.++.+|+|.++.|.|||||+||+|++.
T Consensus 320 ~~------k~~~----~~d-~iI~V~g~~q~~h~~~v~-~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~d 385 (566)
T TIGR00456 320 LD------KLER----GFD-KMIYVWGSDHHLHIAQFF-AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDN 385 (566)
T ss_pred HH------HHhc----CCC-EEEEEecCcHHHHHHHHH-HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHH
Confidence 11 1111 122 468888889864434444 678888864 67899999999999999999999999998
Q ss_pred ----------------------hhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 366 ----------------------DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 366 ----------------------~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
++++ .++.|++||++++.. ..+|++|+++.+.+ .|+++.++++|.++|+.++++|
T Consensus 386 ll~~~~~ra~~~i~~~~~~~~~~~~~-~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK 462 (566)
T TIGR00456 386 LLDEASKRAGNVITIKNDLEEEDVAD-AVGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462 (566)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HhcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHh
Confidence 5555 588999999999966 57999999998877 5899999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCh
Q 006368 424 PPGQGYGSIVPDA--NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (648)
Q Consensus 424 ~~~~~~~~~~p~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (648)
. ..+..+.. .....++.+..|+..+..+.+.+.+++++++++.+++.+++|++.+|+|++.+ |.+..+++
T Consensus 463 ~----~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~ 534 (566)
T TIGR00456 463 A----DIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENE 534 (566)
T ss_pred c----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCH
Confidence 3 22212111 00122556888999999999999999999999999999999999999999987 45543333
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=297.95 Aligned_cols=268 Identities=18% Similarity=0.243 Sum_probs=182.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccch--------HH-HHHHHHcCCC-------
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------AT-ETKAMEDNCS------- 86 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~--------ki-~~~A~~~g~~------- 86 (648)
.++|+|++ ||||.|||||+++ ++.+|+++|++|++|++|.|++|+||||. |. +..|+..|++
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e-~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFRE-VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred cEEEEeCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 38888888 7999999999998 78999999999999999999999999973 22 2344444444
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 87 ---PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 87 ---~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+++|++++.+.|++.++.+||++|.|.+|....+....+.+...|.+++.|..--.+.-=....++|+|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P-------- 173 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP-------- 173 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee--------
Confidence 899999999999999999999999776665555557778888888888776521111100122333333
Q ss_pred CCCccccCCCCCccccccCCCCCcc----cc----CCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCC
Q 006368 164 PFEGCNYESARGDQCENCGKLLNAT----DL----KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~----el----~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (648)
+-..|++||+.+... +. +...| .||+..+..-... ..
T Consensus 174 ----------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~-~cG~~~~~~~~~g-------------------~~----- 218 (510)
T PRK00750 174 ----------FLPICPKCGKVLTTPVISYDAEAGTVTYDC-ECGHEGEVPVTGG-------------------HG----- 218 (510)
T ss_pred ----------eeeeCCCCCccceEEEEEEeCCCCEEEEEc-CCCCEEEEecCCC-------------------Cc-----
Confidence 345677888865422 11 11122 2554443110000 00
Q ss_pred hHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecc
Q 006368 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (648)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkD 315 (648)
.+.|-+ .|+..|... ..+ +-..|+|
T Consensus 219 ----------------------KL~Wr~---------------------------dW~~rW~~l---~Vd---~e~~GkD 243 (510)
T PRK00750 219 ----------------------KLQWKV---------------------------DWPMRWAAL---GVD---FEPFGKD 243 (510)
T ss_pred ----------------------ccCCCC---------------------------CcHHHHHHc---CCC---EEeeCcc
Confidence 011211 233233221 233 6789999
Q ss_pred ccc-hhHhHHHHHhh-hcCCCcccCceEEeeceeecC-CccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcc
Q 006368 316 NVP-FHTVMFPSTLL-GTGENWTLMKTISVTEYLNYE-SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 316 i~~-fH~i~~pa~l~-a~g~~~~~p~~~~~hg~l~~~-G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~ 392 (648)
+.. .+.. .-.+.. .+|.+ +|.. ++|||++.+ |+|||||+||+|++.|+++ .+++|++|||++...+..+|++
T Consensus 244 h~~~s~~~-~~~i~~~ilg~~--~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~-~~~pd~lR~~l~~~~~~~~~~~ 318 (510)
T PRK00750 244 HASASYDT-SKKIAREILGGE--PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLE-YAPPESLRLFMFARPKPAKRLD 318 (510)
T ss_pred cCcchHHH-HHHHHHHHcCCC--CCee-eeeeeEEeCCCCcccccCCCccCHHHHHH-HCCHHHHHHHHHhCCCCCCCCc
Confidence 987 4432 223443 55653 5544 788999987 9999999999999999998 7999999988886667779999
Q ss_pred ccH
Q 006368 393 FTW 395 (648)
Q Consensus 393 fs~ 395 (648)
|++
T Consensus 319 f~~ 321 (510)
T PRK00750 319 FDV 321 (510)
T ss_pred ccH
Confidence 998
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=257.10 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=238.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHH---HHcCC------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA---MEDNC------------ 85 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A---~~~g~------------ 85 (648)
++++.|--..|+|+|++|+||+|++ +.+|+++|.++..||+|.-.--+.|.|..+-.-+ .+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~a-iiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRST-MIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhH-HHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 5689999999999999999999996 5599999999999999988888888887654333 11111
Q ss_pred -------------------------------C------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHH
Q 006368 86 -------------------------------S------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128 (648)
Q Consensus 86 -------------------------------~------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~ 128 (648)
. .+.+++...+.|++++++|||.||.|. .+..|...+.+++
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--~es~~~~~~~~v~ 268 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNDLMEDFI 268 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec--chHhhhhhHHHHH
Confidence 0 123344556789999999999999664 3446777789999
Q ss_pred HHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeecc
Q 006368 129 KKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (648)
Q Consensus 129 ~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~ 208 (648)
+.|.++|++|+.++..|.+.+. + |.
T Consensus 269 ~~L~~~g~~~e~dGa~~~~~~~--~---------------------------------------------g~-------- 293 (562)
T PRK12451 269 GILEEHDLLEESEGALVVNLEE--E---------------------------------------------GM-------- 293 (562)
T ss_pred HHHHHCCCEEecCCeEEEEecc--c---------------------------------------------CC--------
Confidence 9999999999887776643210 0 00
Q ss_pred ceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHh
Q 006368 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSI 288 (648)
Q Consensus 209 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~ 288 (648)
+|..+-|. ++.. +++-..+.|+-
T Consensus 294 ------------------------------------------~~~vl~ks------------DGt~--~Y~t~DiA~~~- 316 (562)
T PRK12451 294 ------------------------------------------PPCLIRKS------------DGAT--IYATRDLTAAL- 316 (562)
T ss_pred ------------------------------------------CceEEEeC------------CCcc--ccchhHHHHHH-
Confidence 00001110 0111 11111122211
Q ss_pred ccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhh
Q 006368 289 TSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAK 368 (648)
Q Consensus 289 ~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l 368 (648)
..+.++ ..| ++|+++|.|+..+-..++ +++.++|..+.---.++.+|++..+|+||||.+||+|+++|++
T Consensus 317 -----~k~~~~---~~d-~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLl 386 (562)
T PRK12451 317 -----YRQNTF---GFD-KALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVL 386 (562)
T ss_pred -----HHhhcc---CCC-EEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHH
Confidence 011111 123 468888888864333344 5667777542111234555889899999999999999999999
Q ss_pred hc------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCC
Q 006368 369 DT------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424 (648)
Q Consensus 369 ~~------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~ 424 (648)
++ ..+.+++||++++..+ .++++|+|+.+.+ .+++-..++++.+.|+.++++|.
T Consensus 387 dea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~-~~g~t~pYiQYa~AR~~SIlrka 464 (562)
T PRK12451 387 EEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLK-FEGETGPYVQYTHARACSILRKE 464 (562)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhC-cCCCccHHHHHHHHHHHHHHHhc
Confidence 83 2668999999998544 6999999999766 34455669999999999999983
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 425 ~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.. ..........++.+..|+..+..+.+.+.+++++++++.++..+++|++.+|+|++..+
T Consensus 465 ~~-----~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~ 525 (562)
T PRK12451 465 SV-----EFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562)
T ss_pred CC-----CccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 01100001125678899999999999999999999999999999999999999998765
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=249.11 Aligned_cols=341 Identities=16% Similarity=0.187 Sum_probs=245.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH-------------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM------------------- 81 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~------------------- 81 (648)
.+++.|--..|+|+|++||||+|++ |.+|+++|.++..||+|.-.--+.|.|..|-.-+.
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~a-iiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNA-IIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhh-HHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 4689999999999999999999996 55999999999999999887777777765533220
Q ss_pred -------------H-cCC---------------C-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHH
Q 006368 82 -------------E-DNC---------------S-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (648)
Q Consensus 82 -------------~-~g~---------------~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~ 127 (648)
+ .+. . .+.+++.....+++++++|||.+|.|...++..+...+.++
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHH
Confidence 0 010 0 01266677788999999999999999877777777789999
Q ss_pred HHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeec
Q 006368 128 FKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDT 207 (648)
Q Consensus 128 ~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~ 207 (648)
++.|.++|++|+.++..+
T Consensus 275 v~~L~~~~~~~e~~GA~~-------------------------------------------------------------- 292 (577)
T COG0018 275 VEDLEEKGLLYEDDGALV-------------------------------------------------------------- 292 (577)
T ss_pred HHHHHhcCCEeeeCCeEE--------------------------------------------------------------
Confidence 999999999998443321
Q ss_pred cceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHH
Q 006368 208 NHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVS 287 (648)
Q Consensus 208 ~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis 287 (648)
+++++|. ... ..+++.|.|+ ++.++|. -..+.|.-
T Consensus 293 ----vdl~~~~-------~~g--------------------d~~~~vl~KS------------DGt~lY~--t~DIAy~~ 327 (577)
T COG0018 293 ----VDLLKFK-------KFG--------------------DDKDRVLQKS------------DGTYLYF--TRDIAYHL 327 (577)
T ss_pred ----Eehhhhh-------hcC--------------------CCCCeEEEEc------------CCCeeee--hhHHHHHH
Confidence 1222221 000 0223334432 2334433 22233321
Q ss_pred hccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEee-ce--eec-CCccccccCCcccC
Q 006368 288 ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVT-EY--LNY-ESGKFSKSKGIGVF 363 (648)
Q Consensus 288 ~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~h-g~--l~~-~G~KMSKS~gN~I~ 363 (648)
. .++ + ..| ++|.++|.|+..+-..+|- .+..+|..+ ++.++.| ++ +.. +|.||||..|++|+
T Consensus 328 ~------K~~--~--~~d-~~IyV~gadq~~~~~ql~~-~l~~~g~~~--~~~~~~h~~~~l~~~~~g~kmStR~G~~vt 393 (577)
T COG0018 328 Y------KFE--R--GFD-KLIYVLGADQHGHFKQLKA-VLELLGYGP--DKEVLLHQGVGLVRGGEGVKMSTRAGNVVT 393 (577)
T ss_pred H------HHh--c--CCC-EEEEEeCCcchhHHHHHHH-HHHHhcCCC--ccceEEEEEEeeeECCCCccccccCCceEE
Confidence 1 111 2 233 5699999999765555664 445556653 3344444 44 443 68899999999999
Q ss_pred hhhhhhcCCC----------------------chhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhh
Q 006368 364 GNDAKDTNIP----------------------VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (648)
Q Consensus 364 ~~~~l~~~~~----------------------~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 421 (648)
.+|+++ ..+ .|++||++++.++ .++++|+|+.+.+ ++++.+.++++.+.|+.+++
T Consensus 394 l~dlld-e~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~ls-fegNt~pYvQYA~ARi~SIl 470 (577)
T COG0018 394 LDDLLD-EAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALS-FEGNTAPYVQYAHARICSIL 470 (577)
T ss_pred HHHHHH-HHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHh-ccCCCchhHHHHHHHHHHHH
Confidence 999998 455 8999999998655 5999999999988 55689999999999999999
Q ss_pred hCCCCCCCCCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 422 AKPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 422 ~k~~~~~~~~~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
+|.... ..+... .......+.+|+..+..++..+.++.+++.++.....+.+|+..+|+|++.++
T Consensus 471 rka~e~----~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~ 538 (577)
T COG0018 471 RKAGED----ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP 538 (577)
T ss_pred Hhcccc----ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC
Confidence 984311 111110 01223347899999999999999999999999999999999999999999875
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=261.25 Aligned_cols=256 Identities=19% Similarity=0.255 Sum_probs=170.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc------------------chHHHHHHHHc
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~------------------G~ki~~~A~~~ 83 (648)
.+++|+|+++ |||.|||||+++ ++.+|+++|++|++|++|.|++++||| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e-~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFRE-VITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhh-hhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 3699999997 999999999998 789999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCch----H----------HHHHHHHHHHHHHHCCCEEEceEeeeeccC
Q 006368 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP----Q----------QTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (648)
Q Consensus 84 g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~----~----------~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 149 (648)
|++ ..|++++.+.|.+.++.|||+++.+. +|+- . +.+.+.+++...... +.
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s-~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-------------~~ 160 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFIR-ASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-------------KL 160 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEEE-HHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-------------cc
Confidence 997 99999999999999999999987553 2221 2 223333333332211 12
Q ss_pred cCcccccccccccCCCCccccCCCCCccccccCCCCCccc------cCCCcCCCCCCCcEEeeccceeeechhhHHHHHH
Q 006368 150 CKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATD------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEE 223 (648)
Q Consensus 150 ~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~e------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~ 223 (648)
.++|+| +-..|++||+.+.+.. -+...|. ||+..+..-+..-
T Consensus 161 ~~~~~P------------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c~-cG~~g~~~~~~g~------------- 208 (515)
T TIGR00467 161 EENWYP------------------ISVFCENCGRDTTTVNNYDNEYSIEYSCE-CGNQESVDIYTGA------------- 208 (515)
T ss_pred CCCcee------------------eeeecCCcCccCceEEEecCCceEEEEcC-CCCEEEEeecCCC-------------
Confidence 223322 3446778888754321 1223342 6655442111000
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCC
Q 006368 224 YINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNP 303 (648)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p 303 (648)
. .+.|-+ .|+..|..+ .
T Consensus 209 --~-------------------------------KL~Wkv---------------------------dW~~RW~~l---g 225 (515)
T TIGR00467 209 --I-------------------------------KLPWRV---------------------------DWPARWKIE---K 225 (515)
T ss_pred --c-------------------------------ccCCCC---------------------------CcHhhHhhh---C
Confidence 0 011211 122222111 2
Q ss_pred CCcceEEEEeccccchh----HhHHHHHhhhcCCCcccCceEEeeceeec--CCccccccCCcccChhhhhhcCCCchhH
Q 006368 304 ENVELYQFMGKDNVPFH----TVMFPSTLLGTGENWTLMKTISVTEYLNY--ESGKFSKSKGIGVFGNDAKDTNIPVEVW 377 (648)
Q Consensus 304 ~~~~~i~~~GkDi~~fH----~i~~pa~l~a~g~~~~~p~~~~~hg~l~~--~G~KMSKS~gN~I~~~~~l~~~~~~d~l 377 (648)
.+ +-..||||...- ....-| ..++|. .+|.. +.++|+++ +|+|||||+||+|++.|+++ .+++|++
T Consensus 226 V~---~Ep~GkDH~~~ggsy~~~~~ia-~~~l~~--~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~-~~~pdal 297 (515)
T TIGR00467 226 VT---FEPAGKDHAAAGGSYDTGVNIA-KEIFQY--SPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLE-VYTPEIT 297 (515)
T ss_pred cc---cccCCCCccCccCCchhHHHHH-HHHhCC--CCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHH-HcCHHHH
Confidence 22 445788886421 212212 234543 24443 44666644 56799999999999999999 6999999
Q ss_pred HHHHhhcCCCCCCccccHHHH
Q 006368 378 RYYLLTNRPEVSDTLFTWADL 398 (648)
Q Consensus 378 R~~ll~~~~~~~d~~fs~~~~ 398 (648)
||++++ ....++++|+++.+
T Consensus 298 R~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 298 RFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred HHHHhc-cCCCCCCcCCHHHH
Confidence 999887 45579999999977
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=220.83 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=114.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.|..+.|+|||++||||+|+ ++.+|+++||+|+.|++|.++.++||+|+||+..|++.+. ++++++.+.+.|.+++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~-~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~ 78 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRN-AIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETY 78 (212)
T ss_pred CeEEEecCCCCCCCccccccHH-HHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3678889999999999999999 5779999999999999999999999999999999977654 8999999999999999
Q ss_pred hhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 103 ~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
++|||++|.|.++++. ...+++++++|.++|++|+..+.+|||+.+
T Consensus 79 ~~L~i~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 79 GRLDVRFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHhCCcCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 9999999999999854 889999999999999999998888887643
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=232.39 Aligned_cols=340 Identities=11% Similarity=0.082 Sum_probs=235.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cC-------C---
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DN-------C--- 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g-------~--- 85 (648)
+++++.|--..|+|+|++|+||+|++ +.+|+++|.++..||+|.-.--+.|.|..+-.-+.. .+ .
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsa-iiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRST-IIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccch-hhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 44789999999999999999999996 559999999999999998888888888765433311 00 0
Q ss_pred ---------------C------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 86 ---------------S------------------------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 86 ---------------~------------------------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
+ .+.+++.....|++.+++|||.+|.+ .+..|...+.+
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 0 11333444567889999999999973 34457777899
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEee
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~ 206 (648)
+++.|.++|++|+.++..|.+. .+. +.+.+++.
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l------~~~-----------------------------------------~~~~vl~k 303 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFV------EGF-----------------------------------------DIPLIVVK 303 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeec------cCC-----------------------------------------CCceEEEE
Confidence 9999999999998877665421 100 00111111
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHH
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yi 286 (648)
.+ +.+. ++-..+.|.
T Consensus 304 sD---------------------------------------------------------------Gt~t--Y~t~DIA~~ 318 (576)
T PLN02286 304 SD---------------------------------------------------------------GGFN--YASTDLAAL 318 (576)
T ss_pred CC---------------------------------------------------------------Cchh--hHHHHHHHH
Confidence 11 1111 111111111
Q ss_pred HhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc-C--ceEEeeceee-cCCccccccCCccc
Q 006368 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL-M--KTISVTEYLN-YESGKFSKSKGIGV 362 (648)
Q Consensus 287 s~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~-p--~~~~~hg~l~-~~G~KMSKS~gN~I 362 (648)
- ..++++ ..| ++|+++|.|+..+-..++ +++.++|..+.. . -.++.+|+++ .+|+||||..||+|
T Consensus 319 ~------~k~~~~---~~d-~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 319 W------YRLNEE---KAE-WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred H------HHHhcc---CCC-EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 0 011111 112 457888888864333333 567777753210 1 2456668896 78899999999999
Q ss_pred Chhhhhhc----------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 363 FGNDAKDT----------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 363 ~~~~~l~~----------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
+++|++++ ..+.+++||++++..+ .++++|+|+.+.+ .+++-..++++.+
T Consensus 388 ~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~-~~g~t~pYlQYah 465 (576)
T PLN02286 388 RLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLD-LKGNTAVYLLYAH 465 (576)
T ss_pred EHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHh-hcCCChHHHHHHH
Confidence 99999983 2457999999998555 5999999999875 4566677999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPD-ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~-~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.|+.++++|.... .. .... ......++.++.|+..+..+.+.+.++.++++++..+..+.+|+..+|+|++.++
T Consensus 466 AR~~SIlrKa~~~-~~-~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~ 540 (576)
T PLN02286 466 ARICSIIRKSGKD-ID-ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK 540 (576)
T ss_pred HHHHHHHHhccCc-cc-cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999983210 00 0000 0011235678899999999999999999999999999999999999999998763
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=163.88 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
|+++.|||||++||||+|+ ++.+|+++|++|++|++|.+++|+||+|++|...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~-~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRT-IVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHH-HHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998 6889999999999999999999999999999999999999999999999999999988
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-20 Score=194.59 Aligned_cols=259 Identities=20% Similarity=0.335 Sum_probs=125.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccch--HHHHHH----HHc--CC------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--ATETKA----MED--NC------ 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~--ki~~~A----~~~--g~------ 85 (648)
++..+.|-|++ +|+|.+|||+++. ++.+|+++|.+|.+|.+|.+++.+||.|- ||-... -++ |+
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rE-v~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VP 98 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFRE-VLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVP 98 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHH-HHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB
T ss_pred CCccEEEecCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCC
Confidence 34455555555 9999999999998 78999999999999999999999999853 111110 011 21
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccccccCCC---ch----------HHHHHHHHHHHHHHHCCCEEEceEeeeecc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISFDNFGRTS---TP----------QQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~---~~----------~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 148 (648)
....|++++.+.|.+.++.|||.++.+..|. +- ++...+.+++....... ..
T Consensus 99 dP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~--------- 167 (360)
T PF01921_consen 99 DPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RP--------- 167 (360)
T ss_dssp -TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------------
T ss_pred CCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CC---------
Confidence 1367999999999999999999987543332 11 24455555555543322 11
Q ss_pred CcCcccccccccccCCCCccccCCCCCccccccCCCCCcc--------ccCCCcCCCCCCCcEEeeccceeeechhhHHH
Q 006368 149 TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNAT--------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNK 220 (648)
Q Consensus 149 ~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~--------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~ 220 (648)
++++| +-..|++||+..... .-+..+|..||+..+..-...- -||+
T Consensus 168 --~~y~P------------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~----- 221 (360)
T PF01921_consen 168 --ETYSP------------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQ----- 221 (360)
T ss_dssp --TT--S------------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE------
T ss_pred --CCeee------------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-cccc-----
Confidence 11111 233577777743221 1234567777776653222111 1221
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHH-hh
Q 006368 221 LEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE-QW 299 (648)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~-~~ 299 (648)
|--+|. +|
T Consensus 222 -----------------------------------------------------------------------WkvDW~mRW 230 (360)
T PF01921_consen 222 -----------------------------------------------------------------------WKVDWPMRW 230 (360)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------CCCcChhhh
Confidence 111221 11
Q ss_pred cCCCCCcceEEEEeccccchhHhHHHHH--h-hhcCCCcccCceEEeeceeecCCc-cccccCCcccChhhhhhcCCCch
Q 006368 300 WKNPENVELYQFMGKDNVPFHTVMFPST--L-LGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVE 375 (648)
Q Consensus 300 w~~p~~~~~i~~~GkDi~~fH~i~~pa~--l-~a~g~~~~~p~~~~~hg~l~~~G~-KMSKS~gN~I~~~~~l~~~~~~d 375 (648)
+--..+ +--.|||+.-.-..+=.+- . .-+|. .|...+..+|++++|. |||||+||+|++.|+|+ -++++
T Consensus 231 ~~lgVd---fEp~GKDH~~~GGS~d~~~~I~~~i~g~---~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-~~~PE 303 (360)
T PF01921_consen 231 AALGVD---FEPFGKDHASPGGSYDTSKRIAREILGY---EPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-YAPPE 303 (360)
T ss_dssp HHTT-S---EEEEEHHHHCTTSHHHHHHHHHHHCC--------EEEEE--EEES--------------HHHHHT-TS-HH
T ss_pred hhcCce---eccCCCccCCCCCChhhHHHHHHHHhCC---CCCCCCCeeEEEeCCCcccccCCCCccCHHHHHH-hcCHH
Confidence 111223 5679999865222222221 1 22443 3456778899988876 99999999999999998 79999
Q ss_pred hHHHHHhhcCCCCCCccccHH
Q 006368 376 VWRYYLLTNRPEVSDTLFTWA 396 (648)
Q Consensus 376 ~lR~~ll~~~~~~~d~~fs~~ 396 (648)
+|||++++..|. +..+|+.+
T Consensus 304 ~lr~l~~~~~P~-~~~~~~~~ 323 (360)
T PF01921_consen 304 SLRYLMARTKPN-KAKDFSFD 323 (360)
T ss_dssp HHHHHHHCS-TT-S-EEE--S
T ss_pred HHHHHHcccCCC-cceEeccC
Confidence 999999985554 66666665
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=174.96 Aligned_cols=258 Identities=19% Similarity=0.271 Sum_probs=156.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------HH--HHHHH-cCC-------
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------TE--TKAME-DNC------- 85 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------i~--~~A~~-~g~------- 85 (648)
..+.|-|++ +|+|.+|||++|. ++++|+++|-+|.+|++|.+++=+||++-- +- ...++ .|+
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rE-v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFRE-VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHH-HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 456666666 9999999999998 789999999999999999999999998531 11 11111 132
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCcccccccCCCc---h----------HHHHHHHHHHHHHHHCCCEEEceEeeeeccC
Q 006368 86 ---SPKEICDKYHVIHKDVYKWFDISFDNFGRTST---P----------QQTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (648)
Q Consensus 86 ---~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~---~----------~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 149 (648)
.+..|++++.+.|.+.++.+||.+..+..|.- - ++...+++++.+...+ +-
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-------------~~ 163 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-------------EL 163 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-------------cc
Confidence 24689999999999999999999876533221 1 2344444444443332 11
Q ss_pred cCcccccccccccCCCCccccCCCCCccccccCCCCCccc-------cCCCcCCCCCCCcEEeeccceeeechhhHHHHH
Q 006368 150 CKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATD-------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLE 222 (648)
Q Consensus 150 ~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~e-------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~ 222 (648)
.+++.| +-..|++||+.+...- -+..+|. ||+..+
T Consensus 164 ~e~~~P------------------~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~------------------- 205 (521)
T COG1384 164 EEDWSP------------------FMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGE------------------- 205 (521)
T ss_pred cCCcee------------------ccccccccCCcceeEEEEecCCceEEEEec-CCccce-------------------
Confidence 222222 3446777887543211 0111121 122211
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCC
Q 006368 223 EYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKN 302 (648)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~ 302 (648)
..|+ .++..+|.- ..|+.. |+.-
T Consensus 206 ------------------------------v~ir---~g~~KL~WR---------------------vdWp~R---W~~l 228 (521)
T COG1384 206 ------------------------------VDIR---GGEGKLPWR---------------------VDWPMR---WAAL 228 (521)
T ss_pred ------------------------------eecc---ccCcccccC---------------------cCccch---hhcc
Confidence 0011 111111111 012211 2211
Q ss_pred CCCcceEEEEeccccchhHhHHHHHhhhc---CCCcccCceEEeeceeecCC-ccccccCCcccChhhhhhcCCCchhHH
Q 006368 303 PENVELYQFMGKDNVPFHTVMFPSTLLGT---GENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWR 378 (648)
Q Consensus 303 p~~~~~i~~~GkDi~~fH~i~~pa~l~a~---g~~~~~p~~~~~hg~l~~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR 378 (648)
..+ +--.||||.-.-..|=.+-..+- |. .+ ..-++..|++++| +|||||+||+|++.|.++ -+++++||
T Consensus 229 gVd---~EPfGKDH~a~ggSydtg~~I~~ei~g~--~p-P~~~~YE~i~lkg~~~mSsSkG~~i~~~dwle-v~~pE~lr 301 (521)
T COG1384 229 GVD---FEPFGKDHAAAGGSYDTGKRIAREIFGY--EP-PVPFVYEWILLKGGGKMSSSKGNVISLSDWLE-VAPPEVLR 301 (521)
T ss_pred Ccc---cccCCcccccccCchHHHHHHHHHhcCC--CC-CCCCceEEEEecCCcccccCCCcEEcHHHHHH-hcCHhHee
Confidence 223 45689998754444433333332 43 23 3456778888887 899999999999999998 79999999
Q ss_pred HHHhhcCCCCCCccccHHH
Q 006368 379 YYLLTNRPEVSDTLFTWAD 397 (648)
Q Consensus 379 ~~ll~~~~~~~d~~fs~~~ 397 (648)
|++++..|. +-.+|+.+.
T Consensus 302 y~~~r~kP~-r~~~~d~~~ 319 (521)
T COG1384 302 YLIARTKPN-RHIDFDFDL 319 (521)
T ss_pred eeeeecCCC-cceecCCCC
Confidence 999986564 444454443
|
|
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=154.01 Aligned_cols=128 Identities=35% Similarity=0.595 Sum_probs=113.7
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~ 481 (648)
+|+++++++||+++|+.+++.+ .+++.+|... .....+++++..+.++.+++.++|++|+++.|+..++++++.
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~----~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 74 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASK----YFGGVVPEFG--GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARA 74 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHH----HcCCcCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999988 6777776532 234567899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 482 GNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 482 ~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|+|++..+||++.++ +..++..+++++.++++.++++|+||||++|+++|++|
T Consensus 75 ~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 75 ANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999999999998865 45667889999999999999999999999999999865
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-17 Score=171.16 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=94.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH-------c--------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-------D-------- 83 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~-------~-------- 83 (648)
..++++.|--..|+|+|++||||+|++ +.+|+++|+++..||+|.-.--+.|.|..+-.-+.. .
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNT-IIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhh-hhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 456689999999999999999999996 559999999999999999999999998876544310 0
Q ss_pred ----------------CC------------------------CHHHHHHH-HHHHHHHHHhhcCcccccccCCCchHHHH
Q 006368 84 ----------------NC------------------------SPKEICDK-YHVIHKDVYKWFDISFDNFGRTSTPQQTE 122 (648)
Q Consensus 84 ----------------g~------------------------~~~e~~~~-~~~~~~~~~~~l~i~~D~f~rT~~~~~~~ 122 (648)
.. ...+++.. +.+.+++.++++++.+|.|...++..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 00 01223334 55678888999999999887666667788
Q ss_pred HHHHHHHHHHHCCCEEEceEeeeec
Q 006368 123 ACQAIFKKLLDNNWLIENTMQQPYC 147 (648)
Q Consensus 123 ~v~~~~~~L~~~G~iy~~~~~~~y~ 147 (648)
.+.++++.|.++|++|+.++..|..
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~ 200 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWID 200 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEe
Confidence 8999999999999999877666543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=159.89 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=79.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|--.|+|||.+|||||+++ +..+.++| +|+..|+.-+||.+.+|... ...+.+.+.+++++
T Consensus 102 V~tRFaPsPtG~LHIGharaa-lln~~~Ar-----~~~G~~iLRidDTDpk~~R~-----------~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAA-ILNDEYAK-----MYGGKFILRFEDTDPRTKRP-----------DPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEeEccCCCCcccc-----------hHHHHHHHHHHHHH
Confidence 667788999999999999985 66999999 58889999999999876221 12334678999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++.| .|.+...++.++|.++|.+|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999776666 778899999999999999984
|
|
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=126.81 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=98.0
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~ 481 (648)
+.++++.++|+++|+.+++.+ .+++..|. . .....|++++..+..+++++.++|++++|+.|++.+ +++.+.
T Consensus 2 ~~~~~~~~~~~l~R~~~~~~~----~~~~~~~~-~--~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAEE----LIETEGEL-E--ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHhccCCc-c--ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357899999999999999987 44444443 1 234678999999999999999999999999999997 999999
Q ss_pred HHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 482 GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 482 ~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|.|++..+|| ....++.++++.++.+|+||||++|+++|++|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99999998887 12346778999999999999999999999865
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=123.68 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=104.2
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
||++.+... ..+..+++|++..+...... .+ .+..........++++...+..+++.+.++|+++++++|+
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al 71 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLED-----DD--EPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccc-----cC--ccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566667655 57888888988865332111 11 1100001223567899999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 473 KTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+.+++++. .+|+|++..+||.+. .+..++..++.++.+++++++++|+||||++|+++|++|
T Consensus 72 ~~i~~~~~~~~~N~Yi~~~~pW~~~-~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 72 TALYEFFWNDFCDWYLELVKPRLYG-EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHcC-CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 99999997 799999999999884 344567788999999999999999999999999999865
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=118.99 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=89.9
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
....||++|+.+++.+ ++++..|..........|+++++.+.++.+++.++|+++++++|+..++++++.+|+|++
T Consensus 7 ~~~~n~l~R~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~ 82 (117)
T cd07958 7 EGAYRFLNRVWRLVTE----LAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKK 82 (117)
T ss_pred HHHHHHHHHHHHHHHH----HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Confidence 3456788888888776 444544421001234568899999999999999999999999999999999999999998
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
..+| +..++.++++.++++|+||||++|+++|++|
T Consensus 83 ~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 83 KDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred cccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 7654 4577888999999999999999999999865
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=124.25 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=106.2
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
|+.+.+.+. +++.++++|.++.+...+.. +...............|++++..+..+.+++.++|++|+++.|+
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~-----~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~ 73 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLND-----FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVY 73 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccC-----CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 456677775 67999999999887654432 21100000012345678999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhhhhhhc--cCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 473 KTAMSISS--EGNAYLQESQFWKLY--KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~--k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..+++++. .+|.|++..+||.+. ++++. ...+..++..+++.++++|+||||++|+++|++||.
T Consensus 74 ~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 74 QALNNFCTVDLSAFYLDIIKDRLYCDAKDSLE-RRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHhcccceecCCCCCHH-HHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 99999995 789999999999873 22332 244667778889999999999999999999999984
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=126.58 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=77.4
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|=-.|+|||.+||||+++ .+..|+++| ++++.|+..+||.+.+.+ + ....+.+.+.+++++|
T Consensus 3 ~~RfaPsPtG~lHiG~~rt-al~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wL 65 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARA-AILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWL 65 (240)
T ss_pred eEeCCCCCCCCccHHHHHH-HHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHc
Confidence 4456789999999999998 567999999 789999999999998874 1 1122233488999999
Q ss_pred CcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|..++.| +|.+..+++.++|.++|.+|.
T Consensus 66 Gl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 99999655555 788888899999999999996
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-10 Score=115.83 Aligned_cols=344 Identities=15% Similarity=0.196 Sum_probs=218.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHH----HHHH----------
Q 006368 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT----ETKA---------- 80 (648)
Q Consensus 15 ~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki----~~~A---------- 80 (648)
..|.-+.+++.|.-..|+.--.+|+||+|++ |.+|.++|.+...|++|+-+--+-|.|+.. +---
T Consensus 181 ~~P~l~~KrvlVDFSSPNIAKeMHVGHLRST-IIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vs 259 (656)
T KOG4426|consen 181 KLPTLSVKRVLVDFSSPNIAKEMHVGHLRST-IIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVS 259 (656)
T ss_pred CCcccceeeEEEecCCCcHHHHhhhhhhhhh-hHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccC
Confidence 3576677899999999999999999999985 669999999999999998887777766542 1111
Q ss_pred ---------------------------HH-----cCCC------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHH
Q 006368 81 ---------------------------ME-----DNCS------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTE 122 (648)
Q Consensus 81 ---------------------------~~-----~g~~------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~ 122 (648)
-+ +|-. +..+|+--.+.|...+++|.|+...- .+..|..
T Consensus 260 p~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESFYq~ 336 (656)
T KOG4426|consen 260 PPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESFYQD 336 (656)
T ss_pred CCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhhhhh
Confidence 00 0111 24577777889999999999987422 3346777
Q ss_pred HHHHHHHHHHHCCCEEEceEee-eeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCC
Q 006368 123 ACQAIFKKLLDNNWLIENTMQQ-PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (648)
Q Consensus 123 ~v~~~~~~L~~~G~iy~~~~~~-~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~ 201 (648)
.+.++.+.|..+|++.+.++.. .|-+. |+-|
T Consensus 337 ~m~~vveel~~kglvee~~Gr~i~f~~g------------------------------------------------~~IP 368 (656)
T KOG4426|consen 337 RMAEVVEELKSKGLVEEDDGRRIMFPEG------------------------------------------------CDIP 368 (656)
T ss_pred HHHHHHHHHhcCCceeecCCceEeccCC------------------------------------------------CCcc
Confidence 8888899999999998776443 22111 2334
Q ss_pred cEEeecccee-eechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeec
Q 006368 202 PQIRDTNHLF-LDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFD 280 (648)
Q Consensus 202 ~~~~~~~~~f-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfD 280 (648)
+.++++..=| .+.+. ...+..-+.+...||.|
T Consensus 369 LtvVKSDGGftYdtsD----------------------laAl~yRl~EEkadwiI------------------------- 401 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSD----------------------LAALKYRLNEEKADWII------------------------- 401 (656)
T ss_pred eEEEecCCCcccccch----------------------HHHHHHHHHHhhcCeEE-------------------------
Confidence 4333333222 11111 11122223333445532
Q ss_pred ccchHHHhccccchHHHhhcCCCCCcceEEEEecccc-chhHhHHHHHhhhcCCCcccCceEEee--ceee-cCCccccc
Q 006368 281 APIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV-PFHTVMFPSTLLGTGENWTLMKTISVT--EYLN-YESGKFSK 356 (648)
Q Consensus 281 a~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~-~fH~i~~pa~l~a~g~~~~~p~~~~~h--g~l~-~~G~KMSK 356 (648)
+++...+. .|.++ |-|--++.=++ +...++.+- |.++ -||+||-+
T Consensus 402 -----------------------------YVvD~GQs~Hf~t~-fkAar~~gwld-~~~~RV~HvgFGlVLGeD~KkFkT 450 (656)
T KOG4426|consen 402 -----------------------------YVVDSGQSQHFNTI-FKAARKAGWLD-PTYPRVEHVGFGLVLGEDKKKFKT 450 (656)
T ss_pred -----------------------------EEeeCchhHHHHHH-HHHHHHcCccC-CCccceeeeeeeeEEccCcccccc
Confidence 22222222 22332 22222221111 112233333 4444 56778888
Q ss_pred cCCcccChhhhhhcC----------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 357 SKGIGVFGNDAKDTN----------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 357 S~gN~I~~~~~l~~~----------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
..|.+|-..|+|+++ .+=..+.|.-++ ....+|.-||.+.|.+- ..+.+-
T Consensus 451 RsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~-hnR~~dY~FSFDkML~D-rGnTAv 528 (656)
T KOG4426|consen 451 RSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLS-HNRITDYIFSFDKMLED-RGNTAV 528 (656)
T ss_pred cccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhc-cccccceeeeHHHHhhc-cCccee
Confidence 888888777776521 111246777776 45568999999988652 366777
Q ss_pred HHhHHHHHHHHhhhCCCCCCCC--CCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 006368 409 NLGNFINRVLSFIAKPPGQGYG--SIVPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~--~~~p~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~y 485 (648)
++-+.+.|+.+++++....+.+ ..+...+ ...+++-+..|-..+..+.+-+..+++++-++..++.+.+|+..+..|
T Consensus 529 YLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~F 608 (656)
T KOG4426|consen 529 YLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEF 608 (656)
T ss_pred hhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999873211000 0000111 123556677888888999999999999999999999999999999999
Q ss_pred HHhhh
Q 006368 486 LQESQ 490 (648)
Q Consensus 486 i~~~~ 490 (648)
++++.
T Consensus 609 Y~~Cy 613 (656)
T KOG4426|consen 609 YDSCY 613 (656)
T ss_pred hhccE
Confidence 98875
|
|
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=110.93 Aligned_cols=90 Identities=27% Similarity=0.433 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH-HHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhc
Q 006368 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSI-SSE-GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEP 522 (648)
Q Consensus 445 d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l-~~~-~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P 522 (648)
|+++++.+..+.+.+.++|++|+|+.|+..++.+ ++. +|.|++..+||...+.+..... +..++.++++.++.+|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 6799999999999999999999999999999997 444 6999999999988765443444 789999999999999999
Q ss_pred cchHHHHHHHHHh
Q 006368 523 FMPSFSVEVNKQL 535 (648)
Q Consensus 523 ~~P~~s~~i~~~L 535 (648)
|||++|+++|++|
T Consensus 80 ~~P~~aEeiw~~l 92 (153)
T PF08264_consen 80 FMPFIAEEIWQRL 92 (153)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 9999999999877
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=109.87 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=102.5
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
||++.+... .+.++++++|.++.++...... .++..............|++++..++.+++.+.++|++|+|+.|+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~---~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLD---GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAV 76 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 677887765 3459999999998886532210 121110000012245689999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhhhh--hhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 473 KTAMSISSE-GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 473 ~~i~~l~~~-~N~yi~~~~p--w~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..++.++.. +|.|++..++ |... +.........++..+++.+..+|+||||++|+++|++++-
T Consensus 77 ~~l~~f~~~~~~~Y~e~~K~~~~~~~--~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 77 RALLEFIDELTNWYIRRNRKRFWGEE--GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHHHhhhhHhhhchHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999865 4889987654 4322 1223344667788899999999999999999999999973
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=100.94 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=87.7
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
.+++|.+.|+..++.+ ++++..|........+.|+++++.++.+.+.+.++|++|+++.|+..+++++...|+|++
T Consensus 8 ~~~~n~~~r~~~~~~~----~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 8 RAFLNRLYRLLSFFRK----ALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 4578888888888765 344433321101124568899999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM 524 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~ 524 (648)
..+||.+.+. ....++.++.++++.++++|+|||
T Consensus 84 ~~~pw~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 84 ELKPALQTEE---LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HhhHHHcCch---hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998652 344567788899999999999996
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=117.58 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|+|.+||||||++ |....+|| .+.-.|+.=++|.+.. .-.+.+.+.+.+++++|||.
T Consensus 7 FAPSPTG~lHiG~artA-L~n~l~Ar-----~~gG~fiLRIEDTD~~-------------Rs~~~~~~~I~e~L~wLGI~ 67 (445)
T PRK12558 7 FAPSPTGYLHVGNARTA-LLNWLYAR-----KHGGKFILRIDDTDLE-------------RSKQEYADAIAEDLKWLGIN 67 (445)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHH-----HhCCEEEEEeccCCcc-------------cchHHHHHHHHHHHHHcCCC
Confidence 34789999999999985 55666666 4677788888887741 22356677899999999999
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|.+++-+ .....++++.++|.++|++|.
T Consensus 68 ~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 68 WDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 99776555 444689999999999999984
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=118.15 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=63.6
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+||||+|++ |....+||- ++-.|+.=+||.+.. .....+.+.+.+++++||+.+
T Consensus 7 APsPtG~lHiG~~rta-l~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~i~~~L~wlGl~~ 67 (470)
T TIGR00464 7 APSPTGYLHIGGARTA-LFNYLFAKH-----TGGEFILRIEDTDLE-------------RNIEEAEEAILEGLKWLGISW 67 (470)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCc-------------cCChHHHHHHHHHHHHCCCCC
Confidence 4789999999999995 668888872 233566666666541 122345667899999999999
Q ss_pred c-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
| --++.+ ++.+.-+++..+|.++|.+|.
T Consensus 68 de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 68 DEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 9 333333 445666788889999999984
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=111.57 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+|||||+++ +....+||- ++=.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 12 v~tRFAPsPtG~LHiGharaA-lln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAA-LLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHH
Confidence 667778899999999999985 558888873 23355556666554 12233456778999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++++ .+.+...+...+|+++|.+|.
T Consensus 73 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 73 IEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 999999765555 667888899999999999984
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=111.34 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
-++|==+|.|||.+|||||+++ +..+.+|| .|+..|+.-+||.+.+ + -...+.+.+.++++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaa-lln~~~Ar-----~~~G~~iLRidDTDp~---R----------~~~e~~~~I~edL~ 153 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAA-ILNQYFAK-----KYKGKLIIRFDDTDPR---R----------VKPEAYDMILEDLD 153 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----hcCCEEEEEeCcCCcc---c----------ccHHHHHHHHHHHH
Confidence 3777788999999999999985 66999987 4677888889998764 1 11235677899999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+||+.+|..+++| .|.+...++.++|+++|.+|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999877777 788999999999999999984
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-08 Score=108.55 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH
Q 006368 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC 91 (648)
Q Consensus 12 ~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~ 91 (648)
.+..+|...+.+ ++|==+|.|||.+|||||+++ +....+||- + +=.|+.=+||.+-. .-.
T Consensus 41 ~~~~L~~a~~~~-v~tRFAPsPtGyLHIGharaA-llN~l~Ar~---~--gG~~iLRiEDTDp~-------------R~~ 100 (601)
T PTZ00402 41 DKLQLTNAEEGK-VVTRFPPEASGFLHIGHAKAA-LINSMLADK---Y--KGKLVFRFDDTNPS-------------KEK 100 (601)
T ss_pred ccccCCCCCCCe-eEEeeCCCCCCcccHHHHHHH-HHHHHHHHH---h--CCEEEEEEcCCCCc-------------ccC
Confidence 444445332222 667778899999999999985 568888883 2 33555556665532 233
Q ss_pred HHHHHHHHHHHhhcCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEE
Q 006368 92 DKYHVIHKDVYKWFDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLI 138 (648)
Q Consensus 92 ~~~~~~~~~~~~~l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy 138 (648)
..+.+.+.+++++||+.+|. .++.+ .|.+...++..+|+++|.+|
T Consensus 101 ~e~~d~IleDL~WLGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 101 EHFEQAILDDLATLGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHHHHCCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 45567789999999999985 33445 67788889999999999998
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-09 Score=111.92 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006368 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD 110 (648)
Q Consensus 31 Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D 110 (648)
|.|+|.+||||+|++ |....+||- +.=.|+.=++|.+.. .....+.+.+.+.+++||+.+|
T Consensus 6 PSPTG~LHiG~artA-L~n~l~Ar~-----~gG~fiLRiEDTD~~-------------R~~~e~~~~I~~~L~WlGl~wD 66 (433)
T PRK12410 6 PSPTGDMHIGNLRAA-IFNYIVAKQ-----QNEDFLIRIEDTDKE-------------RNIEGKDKEILEILNLFGISWD 66 (433)
T ss_pred CCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 789999999999995 668888773 233455555665541 1223445678899999999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 111 NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 111 ~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
--++.+ ++...-+++.++|.++|.+|.
T Consensus 67 e~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 67 KLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 644455 556777888999999999984
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=108.17 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+|||||+++ +....+||. ++-.|+.=+||.+.. .-...+.+.+.+++++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSI-CLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHH
Confidence 567777899999999999985 558888874 334555556665542 2223456778899999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| .-+.++ .|.+...+...+|+++|.+|.
T Consensus 91 LGi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 91 LGFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred cCCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 999995 333344 444555566679999999984
|
|
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=99.36 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=119.3
Q ss_pred ceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhc----------------
Q 006368 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDT---------------- 370 (648)
Q Consensus 307 ~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~---------------- 370 (648)
++|+++...+--+.+.++ -++...|.+|.-+-..+..|- +.=||+.+|+++...|++++
T Consensus 326 r~iYVvd~~Q~~hf~~lf-~ilk~mg~~~a~~~qHV~~G~----v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~ 400 (567)
T KOG1195|consen 326 RLIYVVDSQQKDHFCQLF-EILKKMGFDWAKKLQHVNFGR----VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKP 400 (567)
T ss_pred eEEEEechHHHHHHHHHH-HHHHHhCchhhhhcceecccc----cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCC
Confidence 346666664433334444 467777877754433333333 35699999999998888752
Q ss_pred -----------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCC---
Q 006368 371 -----------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDA--- 436 (648)
Q Consensus 371 -----------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~--- 436 (648)
..+.-++..-.+. +...++..|+|+.+-. +|.+-.-+|.+..+|..++.++ ++...++.
T Consensus 401 ~~~~~~~~vad~lg~sAviv~d~k-~rr~s~yeF~w~~~~~-~~gdtg~yLQY~HsRL~Slerk-----~~~~~~~~l~~ 473 (567)
T KOG1195|consen 401 VQMANPDEVADRLGLSAVIVQDFK-GRRISNYEFSWNRVLS-FEGDTGPYLQYTHSRLRSLERK-----FSDVTLDDLDE 473 (567)
T ss_pred CCCCCHHHHHHHHhhHHHHHHHHH-HHhcccceEEhhhhhe-ecCCchHHHHHHHHHHHHHHHh-----ccccCchhhhc
Confidence 1455566666554 3445899999998876 6788888999999999999987 43332211
Q ss_pred -C-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 437 -N-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 437 -~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
. ....++.-..|+..+..+.+.+..+++.++....+..+..|+..++..+...
T Consensus 474 ~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l 528 (567)
T KOG1195|consen 474 IDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKIL 528 (567)
T ss_pred cchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhhe
Confidence 0 0111222456888899999999999999999999999999999999887653
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.2e-08 Score=111.09 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
-++|==+|.|||.+|||||+++ +....+||- + +=.|+.=+||.+. ..-...+.+.+.++++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~---~--~G~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~ 273 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAA-LLNQYFARR---Y--KGKLIVRFDDTNP-------------SKESDEFVENILKDIE 273 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHH-HHHHHHHHH---h--CCEEEEEecCCCC-------------CcCChHHHHHHHHHHH
Confidence 3677778899999999999985 568888883 2 3355555666554 1122345677899999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+||+.+|..++++ .+.+...+...+|+++|.+|.
T Consensus 274 wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 274 TLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 9999999766666 677888999999999999994
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=98.54 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=60.8
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|+|.+||||++++ +....+||- ++-.|+.=+||.+.+ .-...+.+.+.+++++||+.
T Consensus 6 FAPsPtG~lHlG~~r~a-l~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~ 66 (230)
T cd00418 6 FAPSPTGYLHIGHARTA-LFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLD 66 (230)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC
Confidence 35789999999999985 568888874 344555666666542 12234567788999999999
Q ss_pred ccc-ccCCCchHHHHHHHHHHHHHHHCC
Q 006368 109 FDN-FGRTSTPQQTEACQAIFKKLLDNN 135 (648)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~~~~L~~~G 135 (648)
+|. -++.+ .+.+.-++..++|.++|
T Consensus 67 wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 67 WDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 995 22233 55666777888888888
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=109.87 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.+|==.|.|||.+|||||+++ +....+||. ++-.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 52 v~tRFaPsPtG~LHiGharaa-lln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSM-NLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHHHHH
Confidence 456667899999999999985 558888874 23455555666552 22334566788999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..+.++ .|.+...+...+|+++|.+|.
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 999999665444 556666688889999999984
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=112.71 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=66.8
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|==.|.|+|.+||||+|++ +..-.+||- +.=.|+.=++|.+.. .....+.+.+.+.+++|
T Consensus 6 ~~RfAPSPtG~lHiG~~rta-l~n~l~Ar~-----~~G~fiLRieDtD~~-------------R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTA-LFNWLFARH-----HGGKFILRIEDTDQE-------------RSTEEAEEAILEGLKWL 66 (476)
T ss_pred eEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHC
Confidence 34445789999999999996 558888774 334566666666541 23344566788999999
Q ss_pred Ccccccc--------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNF--------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f--------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|-- ++.+ ++.+.-+++.++|.++|.+|.
T Consensus 67 Gl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 9999932 2333 556788888999999999984
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-08 Score=108.62 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=65.1
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==+|.|||.+|||||+++ +....+||- ++-.|+.=+||.+.. .-...+.+.+.+++++||+
T Consensus 4 RFaPsPtG~LHiG~ar~a-l~n~~~A~~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLG~ 64 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSI-CLNFGYAKY-----YNGTCNLRFDDTNPV-------------KEDPEYVESIKRDVEWLGF 64 (522)
T ss_pred ecCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEEcCCCcc-------------cCChHHHHHHHHHHHHcCC
Confidence 346899999999999985 558888873 334556666665541 1223456778999999999
Q ss_pred ccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+| ..+..+ .|.....+...+|+++|.+|.
T Consensus 65 ~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 65 KWEGKIRYSS--DYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCCceEcc--ccHHHHHHHHHHHHHcCCEEe
Confidence 996 333344 455666677799999999984
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-08 Score=95.88 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
||==.|.|+|.+||||++++ +....++|- ++-.|+.=+||.+.. .-...+.+.+.+++++|
T Consensus 3 ~~RFAPsPtG~lHlG~~~~a-l~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAI-LLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWL 63 (238)
T ss_pred eEecCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHc
Confidence 34445899999999999985 668888874 334566666776643 22334567789999999
Q ss_pred CcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|.-++.+ ++.+.-++...+|.++|.+|.
T Consensus 64 Gl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 99999443344 667888889999999999996
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-08 Score=111.28 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==+|.|||.+|||||+++ +....+||- |+-.|+.=+||.+.. .-...+.+.+.+++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~a-lln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSI-LLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHH
Confidence 667778899999999999985 557777773 334566666775542 1223456778999999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|. .+.++ .|.+...++..+|+++|.+|.
T Consensus 93 LG~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 9999984 33445 677888888999999999984
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=109.49 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=70.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+||||||++ |....+||. |.=.|+.=+||.+.+ .-...+.+.+.+++++
T Consensus 10 v~tRFAPsPtG~LHiG~artA-l~N~~~Ar~-----~~G~fiLRiEDTD~~-------------R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTA-LLNYLYARK-----YGGKFILRIEDTDPE-------------RETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCCC-------------CCCHHHHHHHHHHHHh
Confidence 666677899999999999996 558888884 233455555665541 1122445678899999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|- .++.| ++...-.+...+|+++|.+|.
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 9999997 45556 677888899999999999983
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-08 Score=109.64 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==+|.|||.+|||||+++ +....+||. +.-.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaa-llN~~~Ar~-----~~G~~~LRieDTdp-------------~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGCCYLRFDDTNP-------------EAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCC-------------CccchHHHHHHHHHHHH
Confidence 456667899999999999985 558888885 23345555666552 22334566778999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|.-++++ .|.+..-+...+|+++|.+|.
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEe
Confidence 999988654555 334334445677999999984
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=106.68 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC-CCC
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP-EVS 389 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~-~~~ 389 (648)
.|.|++. |+...-.++.++|. ..| .+.++.++. .+|.||||+.|. +.+.++.+.+|.+++++=|+++.+- .+.
T Consensus 202 RG~d~~~-~t~~q~~l~~aLG~--~~p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~ 276 (513)
T PRK14895 202 RGDDHLT-NAARQLAIYQAFGY--AVP-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGD 276 (513)
T ss_pred ECchHhh-hHHHHHHHHHHcCC--CCC-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 7787763 33344456777884 344 677778887 999999999987 5788888889999999998885331 122
Q ss_pred CccccHHHHHHH
Q 006368 390 DTLFTWADLQAK 401 (648)
Q Consensus 390 d~~fs~~~~~~~ 401 (648)
+--|+.+.+.+.
T Consensus 277 ~e~~~~~el~~~ 288 (513)
T PRK14895 277 DEIISMTQAIDW 288 (513)
T ss_pred cCCCCHHHHHhh
Confidence 234777766554
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-08 Score=96.23 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=49.7
Q ss_pred EEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC
Q 006368 311 FMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (648)
Q Consensus 311 ~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~ 385 (648)
+-|+|++. |+...-+++.++|.+ .| .+.++..+ ..+|.|||||.|+ .++..+.+.++.+.+++.|++..+
T Consensus 123 iRG~D~~~-~t~~q~~l~~aLg~~--~p-~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 123 IRGEEHLS-STPKQILLYEALGWE--PP-KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred EEChhhhh-ChHHHHHHHHHcCCC--CC-ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 46777653 233333566677753 44 44455665 6899999999999 688888777899999999998643
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-08 Score=106.05 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||+|++ |....+||- ++-.|+.=++|.+.. .....+.+.+.+++++
T Consensus 46 vr~RFAPSPTG~LHiG~aRtA-L~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTA-LFNYLFARS-----KGGKFVLRIEDTDLA-------------RSTKESEEAVLRDLKW 106 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHH
Confidence 334445689999999999995 668888883 344555666665541 1233456678899999
Q ss_pred cCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.- ++.+ ++.+.-+++.++|.++|.+|.
T Consensus 107 LGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred cCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 99999942 2223 556777888899999999984
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=94.03 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+|||||+++ |....+|| .+ +=.|+.=+||.+.+ .. ...+.+.+.+++++||+.+
T Consensus 7 APsPtG~lHiG~~r~a-l~n~~~Ar---~~--~G~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTA-LLNYLFAR---KY--GGKFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS-BHHHHHHH-HHHHHHHH---HT--TSEEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT---
T ss_pred CCCCCCCcccchhHHH-HHHHHHHh---cc--CceEEEeccccccc---------cc----hhhHHHHHHhheeEEEEec
Confidence 4789999999999995 56888887 22 33455555665542 11 2344566889999999999
Q ss_pred c-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
| ..++.+ .+.+.-++..++|.++|.+|.
T Consensus 68 D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 8 333444 677888899999999999984
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.09 E-value=9e-05 Score=69.60 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCC-CC-CCCCChHHHHHH
Q 006368 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP-DA-NGAESHQLTKTL 448 (648)
Q Consensus 371 ~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p-~~-~~~~~~~~d~~l 448 (648)
..+.|++||++++..+ .++.+|+++.+.. .+++-...+.+.+.|+.+++++... ..... .. ...-.++.++.|
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~-~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLS-FEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHh-hcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHH
Confidence 4678999999998554 5999999998765 3455677999999999999988321 01100 00 011224568899
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 449 AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 449 ~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
+..+....+.+..++.+.+++.++..+.+|....|.|++...
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~ 118 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999998763
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.3e-05 Score=77.65 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=54.1
Q ss_pred hHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC--CCCCCccccHHH
Q 006368 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWAD 397 (648)
Q Consensus 320 H~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~--~~~~d~~fs~~~ 397 (648)
|.+++-| .| |++|+-...-=.++.+|.|.||..|. +.+..+.+.+|=|+++==|++..+ ....+.-||.++
T Consensus 254 H~lLYkA----fg--W~pPkFaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~e 326 (524)
T KOG1149|consen 254 HILLYKA----FG--WQPPKFAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEE 326 (524)
T ss_pred HHHHHHH----hC--CCCCceeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHH
Confidence 5544444 45 77887433334456899999999986 677888777888898887777542 334455678888
Q ss_pred HHHHhhHHH
Q 006368 398 LQAKSNNEL 406 (648)
Q Consensus 398 ~~~~~n~~l 406 (648)
+.+.+|-+.
T Consensus 327 LieqF~i~~ 335 (524)
T KOG1149|consen 327 LIEQFSIER 335 (524)
T ss_pred HHHHhchhh
Confidence 877655433
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.9e-05 Score=79.00 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+||||++++ |....++|- +.-.|+.=+||.+.. .....+.+.+.+++++|||.+
T Consensus 6 APSPtG~lHiG~~rtA-L~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAA-LGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLHW 66 (272)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCC
Confidence 4789999999999995 668888882 233455555555541 112244567899999999999
Q ss_pred cc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 DN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|. -++.+ ++.+.-++..++|.++|.+|.
T Consensus 67 De~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 94 22344 566788888999999999984
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=69.58 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=47.6
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
++|.+++ -|+|.+||||..+. + ..+++...|++|++..+ |.|-.-. ..+..+. -.......+..++-
T Consensus 3 ~~v~~G~-~PTG~~HlG~~l~~-~----~~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~l 69 (328)
T TIGR00233 3 FRVLTGI-QPSGKMHLGHYLGA-I----QTKWLQQFGVELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADIL 69 (328)
T ss_pred CEEEEee-CCCcHhHHHHHHHH-H----HHHHHHhCCCCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHH
Confidence 4566666 78899999997663 2 33444466999877654 3332110 0111222 22333444566777
Q ss_pred hcCcccc---cccCCCchHHHH
Q 006368 104 WFDISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 104 ~l~i~~D---~f~rT~~~~~~~ 122 (648)
++|+.++ .|..+.-++|.+
T Consensus 70 A~GlDp~k~~if~qS~~~e~~e 91 (328)
T TIGR00233 70 AVGLDPKKTFIFLQSDYPEHYE 91 (328)
T ss_pred HhCcChhheEEEEcCCcHHHHH
Confidence 8898886 344444444433
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00059 Score=71.81 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=48.3
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..++ + -.+.+.+...|.+++|... |-|-. .. ..+|.++ .++......++-++|+
T Consensus 8 sGi-qPTG~~HLGnylga-~--k~~~~lq~~~~~~~~~~IA-DlHal---t~----~~~~~~l-~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 8 TGI-KPTGYPHLGNYIGA-I--KPALQMAKNYEGKALYFIA-DYHAL---NA----VHDPEQF-RSYTREVAATWLSLGL 74 (332)
T ss_pred EEE-CCCCcchHHHHHHH-H--HHHHHHHHhcCCeEEEEEe-chhhc---cC----CCCHHHH-HHHHHHHHHHHhheee
Confidence 444 56699999997763 2 3344555666776766543 44432 10 1255544 3444556777889999
Q ss_pred ccc---cccCCCchHHH
Q 006368 108 SFD---NFGRTSTPQQT 121 (648)
Q Consensus 108 ~~D---~f~rT~~~~~~ 121 (648)
+++ .|..+.-++|.
T Consensus 75 DP~k~~if~qS~v~~~~ 91 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIF 91 (332)
T ss_pred cccceEEEECCCchHHH
Confidence 986 45555656664
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=75.18 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||++++ |....++|- . +-.|+.=+||.+.+ .-...+.+.+.+++++
T Consensus 6 v~~RFAPSPTG~LHlG~~rtA-L~n~l~Ar~---~--~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAA-LGSWLDARA---H--GGRWLLRIEDIDPP-------------REVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHH-HHHHHHHHH---c--CCEEEEEECcCCCC-------------ccchHHHHHHHHHHHH
Confidence 445556789999999999995 557777773 3 33455555665541 1223446778999999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|- -++.+ ++...-++..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999993 22334 567788889999999999984
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=75.60 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHH
Q 006368 11 APPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90 (648)
Q Consensus 11 ~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~ 90 (648)
.++.=+|.....+ .||-=||-|+|-+|||||..+.| .-|.... |+=.+++-.||. .|..=
T Consensus 188 ~~ev~lP~ae~Gk-Vv~RFPPEpSGyLHIGHAKAALL-----NqYfa~~-~~G~LIvRFDDT-------------NPaKE 247 (712)
T KOG1147|consen 188 NKEVDLPGAEMGK-VVTRFPPEPSGYLHIGHAKAALL-----NQYFAQA-YQGKLIVRFDDT-------------NPAKE 247 (712)
T ss_pred CccccCCccccCc-eEEecCCCCCceeehhhHHHHHH-----HHHHHHh-cCceEEEEecCC-------------Ccchh
Confidence 4555566544444 55666789999999999997543 4444333 344566666763 23444
Q ss_pred HHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEe
Q 006368 91 CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143 (648)
Q Consensus 91 ~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~ 143 (648)
-+++...+.+++..|||.+|.+..|+ .|-+.+...-.+|+..|.+|..+.+
T Consensus 248 ~~eFe~~IleDl~~LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 248 NEEFEDVILEDLSLLGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hHHHHHHHHHHHHHhCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCCc
Confidence 45667789999999999999997777 7889999999999999999866543
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00046 Score=74.73 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=42.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
++++|.|+.+.+..-- -+....+.. .| ..+.+-.| ..+|.|||||.||.|++.+- ..++..++=++++
T Consensus 189 iq~gG~DQ~~ni~~gr-dl~~r~~~~--~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILMGR-DLQRKLEGE--EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPE---KTSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhCCC--Cc-eEeccCCccCCCCCccCCCCCCceeccCC---CCCHHHHHHHHHc
Confidence 7889999976543211 111222221 22 22223334 47899999999999999873 4567777777775
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00066 Score=72.87 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=53.9
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ .|+|.+||||..++ + . -+.+.+...|++++|... |-|-.- ...+|.++.+. ...+...|-.+
T Consensus 5 vlSGi-qPTG~lHLGNylGa-i-k-~~v~lq~q~~~~~~~~IA-DlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGA-I-R-PAIAASRQPGVESFYFLA-DYHALI-------KCDDPARIQRS-TLEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHH-H-H-HHHHHHHhCCCcEEEEee-chhhcc-------CCCCHHHHHHH-HHHHHHHHHHh
Confidence 45666 78899999997763 3 1 234444445999766543 333221 12345554443 34467788889
Q ss_pred Ccccc---cccCCCchHHHHHHHHHHHH
Q 006368 106 DISFD---NFGRTSTPQQTEACQAIFKK 130 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~~v~~~~~~ 130 (648)
|++++ .|..+.-|+|.+. .+++..
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~ 98 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTC 98 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHh
Confidence 99986 4666666776443 444333
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=66.16 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..++..-- -+....+ ..+.|..+. +-.|. ++|.|||||.+|.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~r-dla~r~n-~~~~p~~l~-~p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGR-ELARRFN-GFTIAEGLT-IPLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhC-CCCCCeEEe-eccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 7899999976654311 1111121 112344433 34554 899999999999988765543 46677766665
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00099 Score=68.68 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=47.8
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
.+++ -|+|.+||||..+++ -.+ ++++..|+++++..+ |.|..-. ...++. -+.++......++.++|
T Consensus 3 ~tG~-~PTG~lHLG~~~~al---~~~-~~lQ~ag~~~~~~Ia-D~ha~t~------~~~~~~-~~~~~~~~~~~~~lA~G 69 (280)
T cd00806 3 LSGI-QPSGSLHLGHYLGAF---RFW-VWLQEAGYELFFFIA-DLHALTV------KQLDPE-ELRQNTRENAKDYLACG 69 (280)
T ss_pred EEee-CCCchhhHHHHHHHH---HHH-HHHHhCCCCEEEEec-chHHHhC------CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 3444 677999999987632 333 444455999877655 3333310 113443 44555666777888899
Q ss_pred cccc---cccCCCchHHH
Q 006368 107 ISFD---NFGRTSTPQQT 121 (648)
Q Consensus 107 i~~D---~f~rT~~~~~~ 121 (648)
+.++ .|..+.-++|.
T Consensus 70 ~dp~k~~i~~qS~~~~~~ 87 (280)
T cd00806 70 LDPEKSTIFFQSDVPEHY 87 (280)
T ss_pred CCcccCEEEEcCCcHHHH
Confidence 9874 23344444443
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0027 Score=68.91 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=42.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.+.. =--+....+.. +-..+.+-.| ..+|+|||||.||.|++.+- ..++..++=++++
T Consensus 191 i~~gG~DQ~~ni~~-grdla~r~~~~---~~~~l~~plL~~~~G~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNILS-GRDLQRRYGGK---PQFGLTMPLLTGLDGKKMGKSEGNAVWLDEE---KTSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCCC---CeEEEecCCcCCCCCCcccCCCCCceeCCCC---CCCHHHHHHHHhc
Confidence 78899999754332 11111222211 1112222334 37899999999999999873 4677888878775
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=66.18 Aligned_cols=67 Identities=19% Similarity=0.078 Sum_probs=42.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..++..-- -+....+. .. ...+.|..| ..+|.|||||.+|.+| ..+. -+++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~r-d~a~r~~~--~~-~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLGR-DLIRKLGY--KK-VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHHH-HHHHHhCC--CC-cEEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHc
Confidence 7899999986654311 11122222 22 234455666 4899999999999997 4433 356777777665
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=61.61 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=40.2
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+. + .-.+++...|. | +++=.|.|.. .. ...++.++. ++......++..+|+
T Consensus 7 sG~-~PTG~~HLGn~l~~-~---~~~~~lQ~~~~-~-~i~IaD~ha~--~~----~~~~~~~i~-~~~~~~~~~~lA~G~ 72 (333)
T PRK12282 7 TGD-RPTGKLHLGHYVGS-L---KNRVALQNEHE-Q-FVLIADQQAL--TD----NAKNPEKIR-RNILEVALDYLAVGI 72 (333)
T ss_pred Eee-CCCCcchHHHHHHH-H---HHHHHHHhCCC-E-EEEEccchhH--hC----CCCCHHHHH-HHHHHHHHHHHHhCc
Confidence 444 56699999997652 2 23335555564 5 4444677732 21 123554444 445556667778888
Q ss_pred ccc
Q 006368 108 SFD 110 (648)
Q Consensus 108 ~~D 110 (648)
.++
T Consensus 73 dp~ 75 (333)
T PRK12282 73 DPA 75 (333)
T ss_pred Chh
Confidence 876
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0065 Score=64.21 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.+++ -|+|.+||||+. + .-.++++++ .|+++++..+ |.|..-.- ..++ +-+.++...+..
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~-~~i~~~~~~~~~ 93 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-T---MNKLADLQK-AGFKVTVLLA-DWHAYLND------KGDL-EEIRKVAEYNKK 93 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-H---HHHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCH-HHHHHHHHHHHH
Confidence 3455566666 777999999954 2 334566554 5998766654 33322110 0233 444555566778
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++.++|++.+
T Consensus 94 ~~~A~G~dp~ 103 (329)
T PRK08560 94 VFEALGLDPD 103 (329)
T ss_pred HHHHcCCChh
Confidence 8888888765
|
|
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=49.09 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 411 GNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 411 ~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.+.+.|+.++++|..........+.. ....++.++.|+..+......+..+++.++++..++.+.+|+..+|+|++..+
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~~-~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDDD-FLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCCH-HHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHcCCCcCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45689999999983221111111110 01135578899999999999999999999999999999999999999999875
Q ss_pred h
Q 006368 491 F 491 (648)
Q Consensus 491 p 491 (648)
-
T Consensus 81 I 81 (119)
T PF05746_consen 81 I 81 (119)
T ss_dssp S
T ss_pred c
Confidence 3
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.034 Score=59.72 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC--CcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 22 ~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g--~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
-++|+-. =|+| ++||||+.. .-.++|+ ...|++|.++.| |--+|+|.=...+..-.+ .+.+..+.+.+
T Consensus 33 ~~~Y~Gf---DPTa~slHlGhlv~----l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~-~e~v~~n~~~i 103 (401)
T COG0162 33 LRVYIGF---DPTAPSLHLGHLVP----LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEERKLLT-RETVLENAETI 103 (401)
T ss_pred ceEEEee---CCCCCccchhhHHH----HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHHhhcc-HHHHHHHHHHH
Confidence 3455432 4567 899999753 3455555 567999988776 445788853333332233 45555665555
Q ss_pred HHHHh
Q 006368 99 KDVYK 103 (648)
Q Consensus 99 ~~~~~ 103 (648)
++.+.
T Consensus 104 ~~ql~ 108 (401)
T COG0162 104 KKQLG 108 (401)
T ss_pred HHHhc
Confidence 55444
|
|
| >PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.03 Score=43.75 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHH
Q 006368 458 QYLEAM-EKVKLKQGLKTAMSISSEGNA 484 (648)
Q Consensus 458 ~v~~a~-d~~~~~~al~~i~~l~~~~N~ 484 (648)
++.++| |+|+++.|+..|.++++.+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 367899 899999999999999999999
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A. |
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.19 Score=57.79 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHH-HHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARF-CRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~-~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++.|.+++ -|+|.+||||. ++ . .+..+ ++..|++|+|..+ |-|..- -.+.|....++.. ....+.++
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHH
Confidence 34455555 67899999992 23 2 22222 2345999877644 111110 1122223333222 22346667
Q ss_pred HhhcCcccc
Q 006368 102 YKWFDISFD 110 (648)
Q Consensus 102 ~~~l~i~~D 110 (648)
|..+|+..+
T Consensus 100 ~lA~GlDpe 108 (682)
T PTZ00348 100 WKAAGMDMD 108 (682)
T ss_pred HHHcCCCcc
Confidence 888888876
|
|
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.049 Score=41.25 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 459 YLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 459 v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
++++| |+|+++.|+..++++++.+|.+++.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~ 32 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLLK 32 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhhc
Confidence 56788 8999999999999999999999853
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.32 Score=52.04 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.++. -|+|.+||||.. +...++++++ .|+++++..+ |.|.. .. + +.++.+ +.++......
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~----~~~~~~~lQ~-~g~~~~i~Ia-D~ha~--~~---~-~~~~e~-~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM----VFDELKWHQE-FGANVYIPIA-DDEAY--AA---R-GLSWEE-TREWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH----HHHHHHHHHh-cCCCEEEEec-chHHH--hc---C-CCCHHH-HHHHHHHHHH
Confidence 4567777776 677999999954 2444555544 7999866655 44332 11 1 455544 4455555777
Q ss_pred HHhhcCcccc---cccCCCchHHHHHHH
Q 006368 101 VYKWFDISFD---NFGRTSTPQQTEACQ 125 (648)
Q Consensus 101 ~~~~l~i~~D---~f~rT~~~~~~~~v~ 125 (648)
++.++|+.++ .|..+..+.|.+.+.
T Consensus 130 ~~lA~G~Dp~k~~i~~qS~~~~~~~l~~ 157 (368)
T PRK12285 130 DLIALGFDPDKTEIYFQSENIKVYDLAF 157 (368)
T ss_pred HHHHhCCCccceEEEECCchHHHHHHHH
Confidence 8889999986 344445454444433
|
|
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.25 Score=54.25 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.+|-=||-|||.+|||||-..-| -==+|++ .|= |.|+-- || ..|..=..+|-..++++..+
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInv-NFgyAk~---~~G-~cyLRf-DD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINV-NFGYAKA---HGG-VCYLRF-DD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCceeeecchhheee-chhhhhh---hCC-eEEEec-CC-------------CCcchhhHHHHHHHHHHHHH
Confidence 56778899999999999975222 1113332 211 222222 22 13444456677889999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||..+=.. |-+..|-+..-++-..|+.+|.+|.
T Consensus 310 LG~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 99876433 4444666777777888999999984
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.5 Score=50.81 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.++. -|+| .+||||+. +...++.+++..|..+.++ -+|+ +..+.+ +.+. +-+.++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv----~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~~-~~~~-e~i~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLI----PFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLWK-NLSV-EESQRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHH----HHHHHHHHHHhCCCeEEEE-ecCH-----HHHhhc-CCCH-HHHHHHHHHHH
Confidence 4578888887 7888 59999954 3555554444446665555 4454 222333 4564 45556666777
Q ss_pred HHHhhcCcccc-cccCCCchHH
Q 006368 100 DVYKWFDISFD-NFGRTSTPQQ 120 (648)
Q Consensus 100 ~~~~~l~i~~D-~f~rT~~~~~ 120 (648)
..+.++|+.++ .|+.+..+.+
T Consensus 138 ~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 138 KDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHhCCCCcceEEEeccHHH
Confidence 88888998886 3444444444
|
|
| >smart00836 DALR_1 DALR anticodon binding domain | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.2 Score=39.48 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhhCCCCCCCCC-CCCCC---C-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 006368 411 GNFINRVLSFIAKPPGQGYGS-IVPDA---N-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (648)
Q Consensus 411 ~N~~~R~~~~~~k~~~~~~~~-~~p~~---~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~y 485 (648)
.+.+.|+.+++++.. .++ .++.. . ..-.++.++.|+..+..+.+.+..++.+.+++.++..+.+|+...|.|
T Consensus 2 qY~~~Ri~nIl~k~~---~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 2 QYAHARICSILRKAG---EAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSF 78 (122)
T ss_pred cHHHHHHHHHHHHHH---hcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 356788888887721 001 11210 0 011245688999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 006368 486 LQESQ 490 (648)
Q Consensus 486 i~~~~ 490 (648)
++..+
T Consensus 79 y~~v~ 83 (122)
T smart00836 79 YNKCR 83 (122)
T ss_pred HccCc
Confidence 98764
|
This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. |
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.24 Score=45.88 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh--cCcccccccCCCchHHHHHHHHHHH
Q 006368 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDNFGRTSTPQQTEACQAIFK 129 (648)
Q Consensus 52 ~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~--l~i~~D~f~rT~~~~~~~~v~~~~~ 129 (648)
+||++|+.||++.|.. +.-+..|+..|.++|.-. . ..-.+++++ +|+ .-.|++++ .+...+.++..
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIl---l----TRDr~L~~r~k~g~-~~i~i~~~--s~~~Ql~e~~~ 85 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRIL---L----TRDRELYKRAKLGI-KAILIRSD--SIEEQLAEFLA 85 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEE---E----eccHHHHHHhhccC-ceEEEeCC--CHHHHHHHHHH
Confidence 6999999999999997 455577888887765410 0 011223333 222 23466665 44566667766
Q ss_pred HHHHCC
Q 006368 130 KLLDNN 135 (648)
Q Consensus 130 ~L~~~G 135 (648)
++-.++
T Consensus 86 ~~~l~~ 91 (165)
T COG1656 86 RLGLKP 91 (165)
T ss_pred Hhccch
Confidence 665544
|
|
| >COG0073 ARC1 EMAP domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.063 Score=48.11 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcccCCCCceeEEEecCCC-ccceEEecccc
Q 006368 606 AKTAEQLKKTKISGENGLCSLQSETSSN-EGNQITCNGSL 644 (648)
Q Consensus 606 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~-~~~q~~~~~~~ 644 (648)
.+.++.++++++++|+||+..++|+|.+ +.|||+|.-..
T Consensus 21 l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n 60 (123)
T COG0073 21 LRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPN 60 (123)
T ss_pred eEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCcc
Confidence 3566788899999999999999999875 49999985443
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.25 Score=51.38 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=33.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCC--cccCceEEeeceee-cCCc-cccccCCc-ccChhhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGEN--WTLMKTISVTEYLN-YESG-KFSKSKGI-GVFGNDA 367 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~--~~~p~~~~~hg~l~-~~G~-KMSKS~gN-~I~~~~~ 367 (648)
+.++|.|+...+..- --+....+.. .+. ...+.+-++. ++|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~-p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPK-PAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccC-chheeeccccccCCccccCccCCccEEEEecc
Confidence 789999997654321 1111222211 112 3445555664 8898 99999999 8877653
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.14 Score=43.61 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHhhhcccCCCCceeEEEecCCCccceEEeccccc
Q 006368 610 EQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLC 645 (648)
Q Consensus 610 ~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~ 645 (648)
+.++++++++++||+..++|+|+++ |||.|+-...
T Consensus 5 ~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~ 39 (95)
T PF01588_consen 5 KILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNV 39 (95)
T ss_dssp EEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTT
T ss_pred EEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccc
Confidence 4567889999999999999998877 9999986543
|
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A .... |
| >PRK14714 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.71 Score=55.49 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=62.6
Q ss_pred HHHHHHHHHH---HHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCC
Q 006368 122 EACQAIFKKL---LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198 (648)
Q Consensus 122 ~~v~~~~~~L---~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~ 198 (648)
..+++..+.. .+.+-.++-+.....|++|+...+. ..||. ||..-..--.|..||..+.+.+-....|..|
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~--CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPD--CGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcc--cCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 3455555433 2344455666778999999997653 38999 9987544558999999876654445689999
Q ss_pred CCCcEEeeccceeeechhhHHHHHHHH
Q 006368 199 RNAPQIRDTNHLFLDLPALRNKLEEYI 225 (648)
Q Consensus 199 g~~~~~~~~~~~f~~l~~~~~~l~~~~ 225 (648)
|+++. .....=+++..+.....+-+
T Consensus 716 Gtplv--~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 716 DVELT--PYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred CCccc--ccceEEecHHHHHHHHHHHh
Confidence 99886 22333456665544443333
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.1 Score=46.46 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCC-CceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRG-YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G-~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++.|.|++ -|+|.+||||..+. + -.++....+ ++++|. =+|.|-.-+ .+..+.+-...+......+
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga-~----~~~v~~q~~~~~~f~~-IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGA-I----RNWVLLQEEYYECFFF-IADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHH-H----HHHHHHhcccCceEEE-EecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 45666776 78899999996652 2 344444446 476554 445543221 1222234445555666777
Q ss_pred HhhcCcccc---cccCCCchHHHHHHHHH
Q 006368 102 YKWFDISFD---NFGRTSTPQQTEACQAI 127 (648)
Q Consensus 102 ~~~l~i~~D---~f~rT~~~~~~~~v~~~ 127 (648)
+-++||+++ .|..+.-++|.+...-+
T Consensus 72 ~LA~GiDP~k~~if~QS~v~e~~eLa~~l 100 (314)
T COG0180 72 YLAVGLDPEKSTIFLQSEVPEHAELAWLL 100 (314)
T ss_pred HHHhccCccccEEEEccCchHHHHHHHHH
Confidence 888999997 57888888876665443
|
|
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.99 Score=41.78 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=60.2
Q ss_pred HHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC----HHHHHHHHHHHHHHHHhhcCcccc-cccCCCchHHHHHHHH
Q 006368 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS----PKEICDKYHVIHKDVYKWFDISFD-NFGRTSTPQQTEACQA 126 (648)
Q Consensus 52 ~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~----~~e~~~~~~~~~~~~~~~l~i~~D-~f~rT~~~~~~~~v~~ 126 (648)
++|++|+.||||.+..+. .+..|...|.++|.- -.++. +......- .++++. ...+...+
T Consensus 12 Lar~LR~lG~Dt~~~~~~--~D~~il~~A~~e~RillTrd~~l~-----------~~~~~~~~~~li~~~--~~~~QL~e 76 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDI--DDDEILELAREEGRILLTRDRDLL-----------KRRRVSGGVILIRSD--DPEEQLRE 76 (147)
T ss_pred HHHHHHHCCCcEEEeCCC--ChHHHHHHhhhCCeEEEECCHHHH-----------HHhhccCCEEEEcCC--CHHHHHHH
Confidence 689999999999999866 446677888777641 12222 22221111 223222 33444445
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccc---cccccccCCCCccccC-CCCCccccccCCCCCc
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLA---DRLVEGTCPFEGCNYE-SARGDQCENCGKLLNA 187 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~---d~~v~g~cp~~~c~~~-~~~g~~c~~cg~~l~~ 187 (648)
+++.+ |.-......---|+.|+.-|- ...|.+..|. --+. ...--+|+.||+.+-+
T Consensus 77 v~~~~---~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~--~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 77 VLERF---GLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPP--YVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred HHHHc---CCccccCCCCCccCCCCcEeeechhhccccccCc--cccccCCeEEECCCCCCEecc
Confidence 54443 222222222235777777653 2345554443 1110 1113478888887765
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=86.87 E-value=1.5 Score=40.84 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 454 KYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 454 ~~~~~v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
.+...+.++| |+|+++.|+..|+++++.+|.+++.
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~ 68 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKKE 68 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4457899999 8999999999999999999998853
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=84.94 E-value=6.6 Score=42.32 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=35.6
Q ss_pred EEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCC--ccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYES--GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 310 ~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G--~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
--+|.|+..++.+- --+....+. ..| .+++|.++ .+.| .|||||.+| .|++.| +++.++=.+.+
T Consensus 223 VPvG~DQd~~~~lt-Rdia~r~~~--~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 290 (383)
T PLN02486 223 IPCAIDQDPYFRMT-RDVAPRLGY--YKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINK 290 (383)
T ss_pred eecccchHHHHHHH-HHHHHHhCC--CCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhc
Confidence 34689987655331 112222232 234 34445555 3666 799999987 687765 34555555443
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.71 E-value=0.66 Score=49.72 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=33.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEeecee-ecCCccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~-gN~I~~~~ 366 (648)
+-.+|.|+..++.. +-+.+-...|. +.|..++ |-++ -++|.|||||. +|.|.+.|
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf--~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGF--IKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCC--CCchhHh-hhcccCCCCCcCCCCCCCCeeeccC
Confidence 67799999866533 11222111243 3555443 4466 48999999998 67887654
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=1 Score=48.59 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++..|.+++ =|+|.+|||| + ++..--++.+ ...|++|+++.+ |-|..-. .+.|.++.++ ......+..+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g-~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~ 133 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--G-ILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEV 133 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--h-HhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHH
Confidence 333444555 6779999999 3 3333334443 466999888665 2221100 1122333333 4444556677
Q ss_pred HhhcCcccc
Q 006368 102 YKWFDISFD 110 (648)
Q Consensus 102 ~~~l~i~~D 110 (648)
|..+|+..+
T Consensus 134 ~~A~GlDp~ 142 (383)
T PTZ00126 134 WKAAGMDMD 142 (383)
T ss_pred HHHhCCCcc
Confidence 888888775
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=83.84 E-value=0.49 Score=50.77 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=50.1
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
.+++ -|+|.+||||..+ .+ +.|..+. |++++|. =.|.|=.-+ ...++.+ +.++...+...+-++
T Consensus 6 ~sGi-qPSG~~HLGnylG-~i-----k~wv~lq~~~~~~~~-IADlHAlt~------~~~d~~~-ir~~~~~~~a~~lA~ 70 (398)
T PRK12283 6 LSGM-RPTGRLHLGHYHG-VL-----KNWVKLQHEYECFFF-VADWHALTT------HYETPEV-IEKNVWDMVIDWLAA 70 (398)
T ss_pred EEEe-CCCCcchHHHHHH-HH-----HHHHHHhcCCcEEEE-eecHHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 3454 6789999999766 23 4555544 8886544 445443211 0124443 344456688899999
Q ss_pred Ccccc---cccCCCchHHHH
Q 006368 106 DISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~ 122 (648)
|+.++ .|..+..++|.+
T Consensus 71 GlDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 71 GVDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred CCCccceEEEECCCchHHHH
Confidence 99985 567777777743
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=82.85 E-value=0.93 Score=48.05 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=39.3
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+. +. -+++++. +++|+++.+ |-|-.-. ..++. -+..+......++-++|+
T Consensus 6 ~G~-~PTG~lHLG~~~g~-~~--~~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~~~~-~i~~~~~~~~~~~lA~Gl 70 (333)
T PRK00927 6 SGI-QPTGKLHLGNYLGA-IK--NWVELQD--EYECFFCIA-DLHALTV-------PQDPE-ELRENTRELAADYLACGI 70 (333)
T ss_pred Eee-CCCccchHHhHHHH-HH--HHHHHHh--cCCeEEEEe-cHHHHhC-------CCCHH-HHHHHHHHHHHHHHeEcc
Confidence 444 67799999998863 32 2444443 488877764 2222111 12333 334445557777778888
Q ss_pred ccc
Q 006368 108 SFD 110 (648)
Q Consensus 108 ~~D 110 (648)
.++
T Consensus 71 Dp~ 73 (333)
T PRK00927 71 DPE 73 (333)
T ss_pred Chh
Confidence 775
|
|
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=82.84 E-value=5.3 Score=42.97 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=51.2
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ -|+|.+||||..++ + .-+.++++ |++++| +=.|-|-.-+ ..++.++- ++...+...|-.+
T Consensus 49 v~sGi-qPSG~lHLGnylGa-i--~~~v~lQ~--~~~~~~-~IADlHAlt~-------~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGA-I--KNWVALQE--TYDTFF-CVVDLHAITL-------PHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCccHHHHHHHH-H--HHHHHHhc--cCCEEE-EEecHHHhhC-------CCCHHHHH-HHHHHHHHHHHHc
Confidence 34555 67799999997763 3 23333433 888754 4455554421 22555443 4445577888999
Q ss_pred Ccccc---cccCCCchHHHHH
Q 006368 106 DISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~~ 123 (648)
|++++ .|..+..++|.+.
T Consensus 114 GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CcCccceEEEEeCCCchhHHH
Confidence 99986 4667777777544
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=3.4 Score=44.57 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=37.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CC-ccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G-~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..+|..- --+....|.. .+..++.|..|. + +| .|||||.+| .|.+.| +++.+|=-+.+
T Consensus 213 ivpvG~DQ~~~~~La-Rdia~~~~~~--~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D------spe~I~kKI~k 282 (383)
T PTZ00126 213 ICQLGMDQRKVNMLA-REYCDKKKIK--KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED------SEEDVNRKIKK 282 (383)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCCC--CCceeecccccccCCCCCCCCCcCCCCCeecCCC------CHHHHHHHHHh
Confidence 567999998777541 2222333421 122344456663 5 45 799999987 576654 24455554443
|
|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.6 Score=49.71 Aligned_cols=78 Identities=22% Similarity=0.514 Sum_probs=53.4
Q ss_pred CCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeee
Q 006368 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (648)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~ 213 (648)
+|.+ +-.....+|++|+... ..-.||. ||.....-..|..||....+ ..|..||.++. .....=++
T Consensus 617 ~g~~-eVEVg~RfCpsCG~~t----~~frCP~--CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~--~~s~~~i~ 682 (1121)
T PRK04023 617 KGTI-EVEIGRRKCPSCGKET----FYRRCPF--CGTHTEPVYRCPRCGIEVEE-----DECEKCGREPT--PYSKRKID 682 (1121)
T ss_pred CCce-eecccCccCCCCCCcC----CcccCCC--CCCCCCcceeCccccCcCCC-----CcCCCCCCCCC--ccceEEec
Confidence 5665 3345557999999875 3458999 99876667799999987655 45999998875 33333456
Q ss_pred chhhHHHHHHHH
Q 006368 214 LPALRNKLEEYI 225 (648)
Q Consensus 214 l~~~~~~l~~~~ 225 (648)
+..+.....+-+
T Consensus 683 l~~~~~~A~~~l 694 (1121)
T PRK04023 683 LKELYDRALENL 694 (1121)
T ss_pred HHHHHHHHHHHh
Confidence 655544443433
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=81.52 E-value=5.9 Score=42.71 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=26.9
Q ss_pred ccCceEEe-eceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 336 TLMKTISV-TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 336 ~~p~~~~~-hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.|..++. +.++. ++|+|||||.+|.|.+.| +++.+|=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 45555443 34553 799999999999887654 24555555443
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.45 E-value=0.67 Score=48.12 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred cccCceEEee-ceee-cCC-ccccccCCc-ccChh
Q 006368 335 WTLMKTISVT-EYLN-YES-GKFSKSKGI-GVFGN 365 (648)
Q Consensus 335 ~~~p~~~~~h-g~l~-~~G-~KMSKS~gN-~I~~~ 365 (648)
+++|..++.- .++. ++| +|||||.+| +|...
T Consensus 177 f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 177 FPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred cCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 3455444333 3664 788 899999999 77544
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=80.54 E-value=1.8 Score=46.62 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 24 ILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 24 ~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
+.|.+++ -|+| .+||||+.. .-.+++++ ..|++|.++.|
T Consensus 31 ~~vy~G~-dPTg~~lHlGh~v~----l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVGF-DPTAPSLHLGHLVP----LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CEEEEee-CCCCCCccHHHHHH----HHHHHHHH-HCCCcEEEEEe
Confidence 3444555 6778 899999663 33455554 57999988765
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 648 | ||||
| 1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 1e-112 | ||
| 1p7p_A | 551 | Methionyl-trna Synthetase From Escherichia Coli Com | 2e-59 | ||
| 3h9c_A | 547 | Structure Of Methionyl-Trna Synthetase: Crystal For | 3e-59 | ||
| 1f4l_A | 551 | Crystal Structure Of The E.Coli Methionyl-Trna Synt | 3e-59 | ||
| 1qqt_A | 551 | Methionyl-Trna Synthetase From Escherichia Coli Len | 2e-58 | ||
| 3h97_A | 560 | Structure Of A Mutant Methionyl-trna Synthetase Wit | 2e-56 | ||
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 2e-42 | ||
| 1a8h_A | 500 | Methionyl-Trna Synthetase From Thermus Thermophilus | 1e-38 | ||
| 1woy_A | 500 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 3e-38 | ||
| 2d54_A | 502 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 1e-37 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 2e-36 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 5e-33 | ||
| 3tun_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 1e-26 | ||
| 4eg1_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 2e-26 | ||
| 4eg5_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 2e-26 | ||
| 3kfl_A | 564 | Leishmania Major Methionyl-Trna Synthetase In Compl | 3e-24 | ||
| 2v0c_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 4e-07 | ||
| 1obh_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 4e-07 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 2e-04 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 3e-04 |
| >pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
|
| >pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 | Back alignment and structure |
|
| >pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 | Back alignment and structure |
|
| >pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 | Back alignment and structure |
|
| >pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 | Back alignment and structure |
|
| >pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 | Back alignment and structure |
|
| >pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
|
| >pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 | Back alignment and structure |
|
| >pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 | Back alignment and structure |
|
| >pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 | Back alignment and structure |
|
| >pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 | Back alignment and structure |
|
| >pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 824 bits (2131), Expect = 0.0
Identities = 216/635 (34%), Positives = 328/635 (51%), Gaps = 48/635 (7%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
++ SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+Q YC+ K FL DR V GTCP+ C E +GDQCE CG+ L L +P+C +C
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235
Query: 262 GVPVPLER--FKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFM 312
G+PVPL+ K KV YVWF+APIGY+SIT + NEW+++W N + + F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295
Query: 313 GKDNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
GKDN+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
++ D P + RYYL T PE D+ F+++D + + N EL+NNLGNF++R L+F+ +
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
+ +VP+ E +L + E++ K ++ E + + K LK MS++S GN
Sbjct: 415 ----FDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y Q WK KED+ + S+ +V L LLEPF+P S ++ LNL K
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR-- 526
Query: 545 LCDEKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE 602
WE +PAGHK+ P LFK++ DD++ +F + R
Sbjct: 527 --------------WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARIL 572
Query: 603 AEAAKTAEQLKKTKISGENGLCSLQSETSSNEGNQ 637
+ E + + + +
Sbjct: 573 LDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKL 607
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 782 bits (2022), Expect = 0.0
Identities = 144/573 (25%), Positives = 250/573 (43%), Gaps = 45/573 (7%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IL+T A PY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 17 AKKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 75
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++
Sbjct: 76 QQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNR 135
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 136 TISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 193
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P +RD+ H F DLP+ L+ + + G+ + W + GL+ I+RD
Sbjct: 194 TPVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAP 249
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
+ + K FYVW DAPIG + ++ ++++WK ELY F+GK
Sbjct: 250 Y-FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V F ++ +P+ L G+ + + V Y+ K SKS+G + + +
Sbjct: 309 DIVYFLSLFWPAMLEGSN--FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDA 365
Query: 375 EVWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
+ RYY + D D + N +++N + N +R FI K + ++
Sbjct: 366 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK----RFDGVL 421
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
L + E EA E + + ++ M+++ N Y+ E W
Sbjct: 422 ASEL------ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWV 475
Query: 494 LYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGD 551
+ K++ + + L +L L+P +P + LN +
Sbjct: 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT-----------ELT 524
Query: 552 VDRARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
D ++P GHK+ L+ + +VE
Sbjct: 525 WDGIQQP----LLGHKVNPFKALYNRIDMRQVE 553
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = 1e-98
Identities = 131/606 (21%), Positives = 232/606 (38%), Gaps = 93/606 (15%)
Query: 1 MGSTGEENPAAPPPKLPIPG---KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCR 57
M + + PG + IT+A+ Y N PH+G+ + D ARF R
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIA-TDAMARFQR 59
Query: 58 LRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST 117
L G + ++ GTDE+G A ++ +P+++ D+ + + + + S D++ RTS
Sbjct: 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSE 119
Query: 118 PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177
+ +A QAI++ ++ N + + Y + + + E
Sbjct: 120 ERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETE----------------- 162
Query: 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237
+ + + F L A ++KL + N +
Sbjct: 163 ----------VRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN-------NPG 205
Query: 238 AIQATH------AWLKEGLKVRCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT 289
I +++K GLK I+R WG+PVP EK V YVW DA Y++
Sbjct: 206 FIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVP---GDEKHVMYVWVDALTNYITAL 262
Query: 290 SCY---TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY 346
Y T+E +W P N +GKD FH V +P+ L+ L K + +
Sbjct: 263 G-YPDTTDERWAYW--PANA---HIIGKDISRFHAVYWPAFLMSAQLP--LPKRVFAHGF 314
Query: 347 LNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADL 398
L K SKS G + +G D RY+L+ P D ++ +
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQ---------LRYFLMREVPFGQDGSYSHEAI 365
Query: 399 QAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQ 458
++N +L N+LGN R LS IAK VP + K + ++ +E
Sbjct: 366 VNRTNADLANDLGNLAQRSLSMIAK----NCEGKVPQPGAFS--EADKAILDQADAALET 419
Query: 459 YLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLAC 518
+AM+ L L ++ +E N Y + W L K D V+ + ++ +
Sbjct: 420 ARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGI 479
Query: 519 LLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578
+++PF+P + ++ L + + A + G + +P P+F
Sbjct: 480 MVQPFIPQSAEKLLDILAVPAD----------KRQFADVLASPLAGGTDLPAPQPVFPRY 529
Query: 579 KDDEVE 584
+ + +
Sbjct: 530 VEADEQ 535
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = 6e-96
Identities = 130/577 (22%), Positives = 224/577 (38%), Gaps = 101/577 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
PK D+ K + I++D+F RT+ + + Q + KK+ + +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC +C+RF + +L + C +
Sbjct: 121 EYEGLYCVSCERFYTE-------------------------------KELVEGLCPIHGR 149
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVRC 254
+ R + F + R L+EYI + + I+ A L E +
Sbjct: 150 PVERRKEGNYFFRMEKYRPWLQEYIQE-------NPDLIRPEGYRNEVLAMLAEPIGDLS 202
Query: 255 ITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVEL 308
I+R + WG+P+P + E V +VWFDA + YVS Y + +W P
Sbjct: 203 ISRPKSRVPWGIPLP---WDENHVTFVWFDALLNYVSALD-YPEGEAYRTFW--PHAW-- 254
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKG-------- 359
+GKD + H V +P+ L G + + ++V +L G K SK+ G
Sbjct: 255 -HLIGKDILKPHAVFWPTMLKAAGI--PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ +G DA RYYLL P DT + L+ + +L ++LGN + R +
Sbjct: 312 LEKYGRDA---------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+ + +P+ E + + + ++K L+ AM+
Sbjct: 363 MLFRF----AEGRIPEPVAGE-------ELAEGTGLAGRLRPLVRELKFHVALEEAMAYV 411
Query: 480 SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQP 539
N Y+ E + W+L+K++ V+ V + + + LL P MP E+ + L L+
Sbjct: 412 KALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 471
Query: 540 EKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
E + W + LF
Sbjct: 472 EVRLE----------EAERWGLAEPRPIPEEAPVLFP 498
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 3e-94
Identities = 120/622 (19%), Positives = 220/622 (35%), Gaps = 104/622 (16%)
Query: 1 MGSTGEENPAAPPPKLPIPG----KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFC 56
M + + PG ++ T+ + YVN PH+G++ +++ DV R+
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLI-VDVLGRYH 59
Query: 57 RLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTS 116
R++G + GTDE+G A + SP + K ++ + + F RT+
Sbjct: 60 RVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTT 119
Query: 117 TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARG 175
P + Q I+KKL + + Y + + FL + + +G
Sbjct: 120 NPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR----------- 168
Query: 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235
+ + + L A R +L +Y ++
Sbjct: 169 ------------DGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD-------H 209
Query: 236 QNAIQATH------AWLKEGLKVRCITRD----LKWGVPVPLERFKEK-VFYVWFDAPIG 284
N I +++GL I+R + W +PVP E+ YVW DA
Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVP---GDERHCIYVWLDALFN 266
Query: 285 YVS-----------ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333
Y + T + W P +V +GKD + FH + +P+ L+
Sbjct: 267 YYTGALTRVATDGTETLDEDHHALNRW--PADV---HVVGKDILKFHAIYWPAFLMSAEL 321
Query: 334 NWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNR 385
L + + + + K SKS G FG DA +Y+L+
Sbjct: 322 P--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDA---------LKYFLMRES 370
Query: 386 PEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLT 445
D ++ ++ A+ N EL + LGN ++R ++ + P+ AE +
Sbjct: 371 NFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN-----VNGMWPEP--AEYSESD 423
Query: 446 KTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIV 505
KTL + ++ L + NAY+ E+ WKL K D V
Sbjct: 424 KTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTV 483
Query: 506 MRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAG 565
+ ++ + + L+P MP + E+ L + + + + + I+ G
Sbjct: 484 LYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYL---------FGIVKPG 534
Query: 566 HKIGS---PNPLFKELKDDEVE 584
KI +F+++ E
Sbjct: 535 TKIAGLAEGQVVFQKVTLPTEE 556
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 4e-94
Identities = 140/586 (23%), Positives = 218/586 (37%), Gaps = 95/586 (16%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G IT+A+ Y N VPH+G+ + D ARF RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIA-TDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A ++ E+ + + + + + +ISFD F RTS EA +AI+K++ D +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 140 NTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
+ + Y +RF + E
Sbjct: 129 DAYKGWYSIRDERFFTENETTEQPDG---------------------------TRIATET 161
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKV 252
+ F L A ++L I +++ GLK
Sbjct: 162 GAPVTWTEEQTYFFRLSAYTDRLLALYEE-------HPEFIGPDARRNEIVSFVSGGLKD 214
Query: 253 RCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT---SCYTNEWEQWWKNPENVE 307
I+R WGVPVP V YVW DA Y++ + + ++W P ++
Sbjct: 215 LSISRTTFDWGVPVP---DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADL- 268
Query: 308 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG-------- 359
+GKD + FHTV +P+ L+ G L K I +L K SKS G
Sbjct: 269 --HMIGKDIIRFHTVYWPAFLMSAGLP--LPKRIFAHGWLLNRGEKMSKSIGNVVDPVNL 324
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ FG D RY+LL P D + + + N +L N LGN R LS
Sbjct: 325 VDTFGLDQ---------VRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLS 375
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+AK G+ VPD E L +E+ E + + L+ S+
Sbjct: 376 MVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL 429
Query: 480 SEGNAYLQESQFWKLYK----EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
N Y + W L K EDQ V+ T++ +V + + LL+P MP + ++ L
Sbjct: 430 GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLL 489
Query: 536 NLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
P I G + +P+ +F ++D
Sbjct: 490 GQ-PTDERDFSAI----------ANRIKPGTSLPAPSGIFPRYQND 524
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 1e-92
Identities = 145/576 (25%), Positives = 237/576 (41%), Gaps = 106/576 (18%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ +T+ + YVN+VPHLG+ ++ AD AR+ RLR Y+ ++ GTDE+G + KA
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIA-ADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
E SPKE+ D+ K ++++ I + F RT+ P + Q +F++ +
Sbjct: 63 EELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLG 122
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC C+ F ++ L E D C + +
Sbjct: 123 EYEGWYCVGCEEFKSEAELAE-------------------------------DHTCPIHQ 151
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVR 253
+ F L ++KL E + IQ + +++K+GLK
Sbjct: 152 KKCEYIKEPSYFFRLSKYQDKLLELYEK-------NPEFIQPDYRRNEIISFVKQGLKDL 204
Query: 254 CITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELY 309
+TR +KWG+PVP F + YVWFDA Y+S ++ E +W P ++
Sbjct: 205 SVTRPRSRVKWGIPVP---FDPEHTIYVWFDALFNYISALE---DKVEIYW--PADL--- 253
Query: 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IG 361
+GKD + FHTV +P+ L+ G L K + + E K SK+ G +
Sbjct: 254 HLVGKDILRFHTVYWPAFLMSLGYE--LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ 311
Query: 362 VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421
+G D RY+LL P D F+ + + N EL N +GN +RV++
Sbjct: 312 EYGLDE---------VRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMA 362
Query: 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481
K G V A E A+ + ++ Y MEKV + ++ + +S
Sbjct: 363 HK----FLGGEVSGARDEE-------YAKIAQESIKNYENYMEKVNFYKAIEEILKFTSY 411
Query: 482 GNAYLQESQFWKLYKEDQPS-CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPE 540
N Y+ E Q W L KE + V+ V + +L LL P P+ E + L +
Sbjct: 412 LNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF 471
Query: 541 KHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
+ +P+ +K+G LF
Sbjct: 472 ------------LKELKPYS--KNTYKLGERKILFP 493
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 2e-88
Identities = 109/581 (18%), Positives = 211/581 (36%), Gaps = 65/581 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ +++ DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLI-TDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ Y + + FL + + +G
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVDK-----------------------DGNPCKVSLESG 163
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMS--VAGSWSQNAIQATHAWLKEGLKVRCITR 257
+ + L A R +L E+ + + + + + +++GL ++R
Sbjct: 164 HVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVI---RAVEKGLPDLSVSR 220
Query: 258 D----LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQF-- 311
W +PVP + YVW DA Y++ + +E + ++ +
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 312 -----MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+GKD + FH + +P+ LL G L K I + + K SKS G +
Sbjct: 279 ADVHVIGKDILKFHAIYWPAFLLSAGL--PLPKKIVAHGWWTKDRKKISKSLGNVFDPVE 336
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
+ + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 337 KAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN--- 392
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
P A + ++L + + +++ + + NAY+
Sbjct: 393 --VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
+ WKL K D V+ ++ V + LL P +P SV + L + +
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIE 508
Query: 547 DEKGDVDRARRPWEIIPAGHKIGS---PNPLFKELKDDEVE 584
+ + + +P G ++G LF + + +
Sbjct: 509 NFE---------FGAVPPGTRLGPAVEGEVLFSKRSTENTK 540
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 88/530 (16%), Positives = 168/530 (31%), Gaps = 107/530 (20%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE-----NCGKLLNATDLKDPK 194
+ Y + P+EG + + + +++ K+
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI 449
Query: 195 CKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKV 252
+ A + F+D P + K + + M + + +A WL +
Sbjct: 450 SRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK---- 505
Query: 253 RCITRDLKWGVPVPL------ERFKEKVFYVWFDAPIG---------------------- 284
+ R + G P+P E + Y+ +
Sbjct: 506 KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFD 565
Query: 285 YVSITSCYTNEWEQWWKN---PENVELYQFM-------------GKDNVPFH--TVMFPS 326
Y+ + ++ ++ K P + GKD +P H +F
Sbjct: 566 YIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNH 625
Query: 327 TLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWR 378
+ E+W K I+V + E K SKSKG I G D R
Sbjct: 626 VAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVV---------R 674
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANG 438
Y+++ SD + + + L I R I++
Sbjct: 675 LYIMSLAEHDSDFDWRR---------KEVGKLRKQIERFYELISQFAEYE------VKGN 719
Query: 439 AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKE 497
E + + + ++ K +++ A+E+ + + ++ A SI ++ YL+ +
Sbjct: 720 VELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT-----EGR 774
Query: 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
D + V+RT L + L+ PF P E+ ++L E +SL
Sbjct: 775 DDEAKRYVLRT---LADVWVRLMAPFTPHICEELWEKLG--GEGFVSLAK 819
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KAM------------------------EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 86/604 (14%), Positives = 168/604 (27%), Gaps = 175/604 (28%)
Query: 77 ETKAMEDNCSPKEI-----CDKYHVIHKD-----VYKWFDISFDNFGRTSTPQQTEACQA 126
+ K ++D PK I D H+I + F +Q E Q
Sbjct: 34 DCKDVQD--MPKSILSKEEID--HIIMSKDAVSGTLRLFWTLLS--------KQEEMVQK 81
Query: 127 IFKKLLDNN--WL---IENTMQQPYCDTCKRFLA--DRLVEGTCPFEGCNYESARGDQCE 179
+++L N +L I+ +QP T + ++ DRL F Y +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFA--KYNVSRLQPYL 138
Query: 180 N---------------------CGK-LLNATDLKDPKCKVCRNAP-------QIRDTNHL 210
GK + K + + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 211 FLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK--------VRC--ITRDLK 260
L L +++ N + S N H ++ L+ C + ++
Sbjct: 199 LEMLQKLLYQIDP---NWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNV- 253
Query: 261 WGVPVPLERF--KEKVFYVWFDAPI----GYVSITSCYTNEWEQWWKNPENVELY-QFMG 313
F K+ + + T + E L +++
Sbjct: 254 QNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 314 ----------KDNVPFHTVMFPSTL---LGTGENW------TLMKTISVT-EYLN----- 348
P + ++ L T +NW L I + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 349 --YESGKFSKSKGIGVFGNDAKDTNIPVEV----WRYYLLTNRPEVSDTLFTWADLQAKS 402
++ + VF +IP + W + ++ + V L K
Sbjct: 373 KMFDR--------LSVF---PPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 403 NNEL---LNNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVE 457
E + ++ L K + SIV N ++ + + +Y
Sbjct: 421 PKESTISIPSI------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 458 QYL-------EAMEKVK-----------LKQGLK---TAMSISSEGNAYLQESQFWKLYK 496
++ E E++ L+Q ++ TA + S LQ+ +F+K Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY- 533
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEV--NKQLNLQPEKHISLCDEKGDV-D 553
+ + L + F+P + +K +L I+L E + +
Sbjct: 534 ---------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL---RIALMAEDEAIFE 581
Query: 554 RARR 557
A +
Sbjct: 582 EAHK 585
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 95/513 (18%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR---GDQCENCGKLLNATDLKDPKCK 196
+ Y + P+EG + + + G + +
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNV- 448
Query: 197 VCRN-----APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251
+ R I D + P + K + + M + + +A WL +
Sbjct: 449 ISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK--- 505
Query: 252 VRCITRDLKWGVPVPL------------------------------------ERFKEKVF 275
+ R + G P+P E+ + F
Sbjct: 506 -KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFF 564
Query: 276 YVWFDAPIGYVSI---TSCYTNEWEQWWKNPENVELYQFM-------GKDNVPFH--TVM 323
F E + E E + GKD +P H +
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFE--YWYPLDWRCSGKDLIPNHLTFFI 622
Query: 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383
F + E+W K I+V + E K SKSKG + DA + N +V R Y+++
Sbjct: 623 FNHVAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGA-DVVRLYIMS 679
Query: 384 NRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQ 443
SD + + + L I R I++ E
Sbjct: 680 LAEHDSDFDW---------RRKEVGKLRKQIERFYELISQFAEYE------VKGNVELKD 724
Query: 444 LTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSC 502
+ + + ++ K +++ A+E+ + + ++ A SI ++ YL+ ++ D +
Sbjct: 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE-----GRDDEAK 779
Query: 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
V+RT L + L+ PF P E+ ++L
Sbjct: 780 RYVLRT---LADVWVRLMAPFTPHICEELWEKL 809
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 9e-08
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KA------------------------MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A + P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 100.0 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.97 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.69 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.59 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.48 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.46 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.37 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.23 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.22 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.19 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.18 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 99.08 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 98.97 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 98.59 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 98.14 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 97.74 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 97.66 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 97.46 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 97.25 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 96.85 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 94.86 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 94.81 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 94.75 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 94.74 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 94.64 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 94.56 | |
| 1gd7_A | 109 | CSAA protein; oligonucleotide-binding fold, functi | 94.39 | |
| 3ers_X | 118 | TRNA-binding protein YGJH; oligonucleotide-oligosa | 94.29 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 94.13 | |
| 1mkh_A | 107 | Metrs;, C-terminal domain of methionyl-tRNA synthe | 94.0 | |
| 2cwp_A | 112 | Metrs related protein; structural GEN riken struct | 93.98 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 93.91 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 93.89 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 93.86 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 93.32 | |
| 1pyb_A | 111 | Methionyl-tRNA synthetase beta subunit; oligonucle | 93.25 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 93.23 | |
| 2nzh_A | 113 | Protein CSAA; beta barrel, oligonucleotide/oligosa | 92.26 | |
| 2q2i_A | 116 | AGR_C_4014P, secretion chaperone; beta barrel, OB | 92.09 | |
| 3g48_A | 112 | Chaperone CSAA; structural genomics, niaid structu | 91.76 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 91.64 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 91.44 | |
| 1pxf_A | 111 | Hypothetical protein YGJH; oligonucleotide-oligosa | 91.43 | |
| 2q2h_A | 131 | AGR_C_4014P, secretion chaperone, phage-display de | 91.32 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 91.21 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 91.04 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 90.92 | |
| 3bu2_A | 199 | Putative tRNA-binding protein; structural genomics | 90.78 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 90.73 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 90.51 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 90.44 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 90.12 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 89.46 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 89.43 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 89.35 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 89.05 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 88.99 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 88.95 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 88.94 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 88.57 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 88.44 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 87.65 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 87.62 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 87.29 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 87.14 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 86.84 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 86.68 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 86.48 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 86.47 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 85.66 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 85.64 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 85.3 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 84.95 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 83.1 | |
| 2e8g_A | 241 | Hypothetical protein PH0536; oligonucleotide/oligo | 82.38 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 81.96 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 81.56 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 81.35 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 80.26 |
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-122 Score=1056.64 Aligned_cols=592 Identities=36% Similarity=0.698 Sum_probs=498.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++||||+|+|||||.+||||++++++.+|+++||+||+||+|+|++|+|+||+||+.+|+++|++|+++++++++.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998567899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
|++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+++|||+.|++||+|++|+|+||. |+.++++|++|+.|
T Consensus 82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSSS
T ss_pred HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCc--cCCccCCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
|+.+++.+|++|+|++||++++++.++||||+|++|+++|.+|+++++ ||++.++++.+||++|++||||||++.|
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~W 235 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLNW 235 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHCCCcccceeccccC
Confidence 999999999999999999999999999999999999999999999864 8999999999999999999999999999
Q ss_pred CcccCCc--CCCCceeeeeecccchHHHhccccch------HHHhhcCC-CCCcceEEEEeccccchhHhHHHHHhhhcC
Q 006368 262 GVPVPLE--RFKEKVFYVWFDAPIGYVSITSCYTN------EWEQWWKN-PENVELYQFMGKDNVPFHTVMFPSTLLGTG 332 (648)
Q Consensus 262 Gi~vP~~--~~~~~v~yVWfDa~~~yis~~~~~~~------~~~~~w~~-p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g 332 (648)
|+|+|.+ +.+++++||||||+++|++....|.. +|..||++ +.++..+|++|+||++||+++|||||+++|
T Consensus 236 G~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~ 315 (722)
T 1rqg_A 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYG 315 (722)
T ss_dssp SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred ccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccC
Confidence 9999974 34799999999999999987654532 68899972 235666899999999999999999999987
Q ss_pred C--------CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhH
Q 006368 333 E--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (648)
Q Consensus 333 ~--------~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 404 (648)
. .|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++..++++|++||++.+.+++|+
T Consensus 316 ~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~ 394 (722)
T 1rqg_A 316 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 394 (722)
T ss_dssp CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred CCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHH
Confidence 3 367889999999999999999999999999999998 8999999999999889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 006368 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (648)
Q Consensus 405 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~ 484 (648)
+++++++||++|+.+++.+ ++++.+|... ...+.|+++++.+..+.+.+.++|++|+|+.|++.+++|++.+|+
T Consensus 395 ~l~~~l~N~~~R~~~~~~k----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~ 468 (722)
T 1rqg_A 395 ELVNNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468 (722)
T ss_dssp TTTTTHHHHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCCCCcc--cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666665321 235678999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPA 564 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 564 (648)
|++..+||.+.++++.++.++++++.++++++++||+||||++|++||++||.+.. .+|.+ ..+++
T Consensus 469 Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~~ 534 (722)
T 1rqg_A 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELPA 534 (722)
T ss_dssp HHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCCT
T ss_pred HHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcc--cCchh------------ccCCC
Confidence 99999999998766677888999999999999999999999999999999997531 12322 12567
Q ss_pred CCccCCCCCCCCCCChHHHHHHHHH----------------hccch---h-HHHH--H--------------H-H-----
Q 006368 565 GHKIGSPNPLFKELKDDEVEFFRSK----------------FAGSQ---A-DRII--R--------------A-E----- 602 (648)
Q Consensus 565 g~~l~~~~~Lf~~i~~~~~~~~~~~----------------~~~~~---~-~~~~--~--------------~-~----- 602 (648)
|++|+++++||+||++++++++.++ +.+.+ + ++++ . . +
T Consensus 535 g~~~~~~~~lf~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (722)
T 1rqg_A 535 GHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGK 614 (722)
T ss_dssp TCBCCCCCCSCCCCCHHHHHHHHHHTTTTTCHHHHHHHHHHHSCHHHHHHHHHHHHGGGTHHHHHHHSSCCC--------
T ss_pred CCCcCCCCCCcCCCCHHHHHHHHhhccccccccccchhhhhhhhhhccchhhcccccccccccccccccccccccccccc
Confidence 9999999999999999888766642 11111 0 0000 0 0 0
Q ss_pred ----------HHHHHHHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 603 ----------AEAAKTAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 603 ----------~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
+-..+++++++++++++|+||+.+|||+|+ +.|||+|.
T Consensus 615 ~~~i~~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g 662 (722)
T 1rqg_A 615 EMYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAG 662 (722)
T ss_dssp -------------------------------------------------
T ss_pred cccccHhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEEC
Confidence 002256789999999999999999999986 68999884
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-109 Score=936.78 Aligned_cols=535 Identities=27% Similarity=0.507 Sum_probs=490.6
Q ss_pred CCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHH
Q 006368 17 PIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV 96 (648)
Q Consensus 17 ~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~ 96 (648)
|..++++||||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+|+||+||+.+|++.|++|+++++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 4668889999999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 97 IHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 97 ~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
.|++++++|||++|.|++|+++.|...++++|.+|.++|+||++.+.+|||+.|++||++++|+|+||. |++.+++|+
T Consensus 92 ~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~gd 169 (560)
T 3h99_A 92 EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTT--TCCSSEETT
T ss_pred HHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCC--CCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceee
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~Is 256 (648)
+|++||+.+++.++++|+|++||++++.+.++||||+|++|+++|.+++++. .|+++.++.+.+|+++++.|||||
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~D~~Is 245 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGLQQWDIS 245 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS----CSCHHHHHHHHHHHHHCCCCEECE
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHhcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999883 378999999999999999999999
Q ss_pred ecc-CCCcccCCcCCCCceeeeeecccchHHHhccccc------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhh
Q 006368 257 RDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329 (648)
Q Consensus 257 R~~-~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~ 329 (648)
|++ .||+|||.+ +++|+||||||+++|++++..|+ .+|..|||.+.+++++|++|+||++||+++|||+|+
T Consensus 246 R~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~ 323 (560)
T 3h99_A 246 RDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLE 323 (560)
T ss_dssp EESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHH
T ss_pred ccCCcCCeeCCCC--CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 997 689999987 79999999999999999875553 469999986667888999999999999999999999
Q ss_pred hcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCC-CCccccHHHHHHHhhHHHHH
Q 006368 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 330 a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~ 408 (648)
++|.+ +|+.+++||||+.+|+|||||+||||+|.++++ .||+|++||||++..+.+ +|++|+++.+.+++|+++++
T Consensus 324 ~~g~~--~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~-~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 324 GSNFR--KPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp HTTBC--CCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred hCCCC--CCcEEEEEeEEEeCCeeccccCCCcCCHHHHHH-HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99974 679999999999999999999999999999999 799999999999988876 89999999999999999999
Q ss_pred HHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 409 NLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
+++|+++|+.+++.+ ++++.+|.. ..|++|++.+..+++.+.++|++++++.|++.+++|++.+|+|++.
T Consensus 401 ~l~n~~~R~~~~~~~----~~~~~~~~~------~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~ 470 (560)
T 3h99_A 401 KVVNLASRNAGFINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDE 470 (560)
T ss_dssp CCTHHHHTTHHHHHH----HSTTBCCSS------CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcCCCCCCc------cccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887 566655532 2356899999999999999999999999999999999999999999
Q ss_pred hhhhhhccC--ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCC
Q 006368 489 SQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGH 566 (648)
Q Consensus 489 ~~pw~l~k~--~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 566 (648)
.+||.+.++ +..++.+++.++.++++.+++||+||||++|++||++||++ .+|.+. .. .+ .|+
T Consensus 471 ~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----~~w~~~---------~~-~~-~~~ 535 (560)
T 3h99_A 471 QAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI---------QQ-PL-LGH 535 (560)
T ss_dssp HCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC----CCTGGG---------GS-CC-CSC
T ss_pred cCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC----CChhhh---------hc-cC-CCC
Confidence 999988764 34567788889999999999999999999999999999986 234331 01 23 599
Q ss_pred ccCCCCCCCCCCChHHHHHHHH
Q 006368 567 KIGSPNPLFKELKDDEVEFFRS 588 (648)
Q Consensus 567 ~l~~~~~Lf~~i~~~~~~~~~~ 588 (648)
+|+++.+||+||+.++++++.+
T Consensus 536 ~i~~~~~lf~ri~~~~~~~~~~ 557 (560)
T 3h99_A 536 KVNPFKALYNRIDMRQVEALVE 557 (560)
T ss_dssp BCCCCSCSCCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHHh
Confidence 9999999999999998888774
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-108 Score=921.09 Aligned_cols=519 Identities=21% Similarity=0.346 Sum_probs=464.9
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
+...++||||||+|||||.||||||++ ++.+||++||+||+||+|.|++|+||||+||+.+|+++|++|+++|+++++.
T Consensus 5 ~~~~k~f~Ittp~pY~nG~lHiGHa~~-~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNAAPHIGHVYS-TLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp --CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCCchhhHHHHH-HHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456678999999999999999999999 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcc
Q 006368 98 HKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177 (648)
Q Consensus 98 ~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ 177 (648)
|++++++|||++|.|+||++++|.+.|+++|.+|+++|+||++.+.++||++|++||+|++|++.|+. .|+.
T Consensus 84 ~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~--------~g~~ 155 (542)
T 3u1f_A 84 FKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDK--------DGNP 155 (542)
T ss_dssp HHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCE
T ss_pred HHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccc--------cCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 4566
Q ss_pred ccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee
Q 006368 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR 257 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR 257 (648)
|+ .|++||++++.+.++||||+++++++++.+|+++++.. .+|....+...+|+.++++||||||
T Consensus 156 ~~--------------~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~~~~~~~l~Dw~ISR 220 (542)
T 3u1f_A 156 CK--------------VSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGC-IVPEFRRREVIRAVEKGLPDLSVSR 220 (542)
T ss_dssp EE--------------EETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEE
T ss_pred cc--------------ccCCCCCcceeeccccceecchhHHHHHHHHHhhcccc-cCCchhhHhHhhhhhccccccCccc
Confidence 64 46779999999999999999999999999999988753 3477778888999999999999999
Q ss_pred ccC----CCcccCCcCCCCceeeeeecccchHHHhcccc----------chHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 258 DLK----WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY----------TNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 258 ~~~----WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~----------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
++. ||||+|.+ +++++||||||+++|++....+ .++|..+|..|.+ +|++|+||++||+++
T Consensus 221 q~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d---~~~~G~D~~~fh~~~ 295 (542)
T 3u1f_A 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD---VHVIGKDILKFHAIY 295 (542)
T ss_dssp EGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS---EEEEEGGGHHHHHTH
T ss_pred cccCcCCCCCccCCC--cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce---EEEecccccccccch
Confidence 976 99999987 6999999999999999876322 2344444444566 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
|||+++++|.+ +|+.+++||||+.+|+|||||+||||+|.++++ +||+|+|||||++.+++++|++||++.+.+++|
T Consensus 296 ~~a~l~~~g~~--~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 296 WPAFLLSAGLP--LPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp HHHHHHHHTCC--CCSCEEEECCCEETTBCCBTTTTBCCCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred hHHHHHhhccc--ccceeccccceecCCceeccccCCCCChhHHHh-hcCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 99999999875 789999999999999999999999999999999 799999999999889999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N 483 (648)
++|+++|+|+++|+..+..+ +++..|.. ....+.|+++++.+.++.+.+.++|++|++++|++.|++|++.+|
T Consensus 373 ~~l~n~l~N~~~r~~~~~~~-----~~~~~~~~--~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 445 (542)
T 3u1f_A 373 GELADTLGNLVMRCTSAKIN-----VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAIN 445 (542)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhc-----ccCCCCcc--chhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654 55666543 245678999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 563 (648)
+|++..+||++.+++++++++++++++++++++++||+||||++|++||++||++......+.+ ..|+.++
T Consensus 446 ~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~---------~~~~~l~ 516 (542)
T 3u1f_A 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIEN---------FEFGAVP 516 (542)
T ss_dssp HHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGG---------GSTTCSC
T ss_pred HHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhh---------ccccCCC
Confidence 9999999999998888889999999999999999999999999999999999987543212211 2356788
Q ss_pred CCCccC---CCCCCCCCCChHHHH
Q 006368 564 AGHKIG---SPNPLFKELKDDEVE 584 (648)
Q Consensus 564 ~g~~l~---~~~~Lf~~i~~~~~~ 584 (648)
+|++|+ ++++||+||++++++
T Consensus 517 ~g~~i~~~~~~~~LF~kie~e~~e 540 (542)
T 3u1f_A 517 PGTRLGPAVEGEVLFSKRSTENTK 540 (542)
T ss_dssp TTCBCCCCCTTCCSSCCCCCCC--
T ss_pred CCCCcCCcCCCCCCcCCCChhhhh
Confidence 999996 368999999987554
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-107 Score=912.02 Aligned_cols=521 Identities=21% Similarity=0.355 Sum_probs=464.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++|||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+||||+||+.+|+++|++|+++++++.+.|
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYS-TLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHH-HHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34678999999999999999999998 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccc
Q 006368 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (648)
Q Consensus 99 ~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (648)
++++++|||++|.|+||++++|.+.++++|++|+++|+||++.+++|||+.|++|++++++.+.||. +|+.|
T Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~--------~g~~c 173 (564)
T 3kfl_A 102 KQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR--------DGKPC 173 (564)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCC--------CCCEe
Confidence 9999999999999999999999999999999999999999999999999999999999999876643 45555
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR- 257 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR- 257 (648)
.. +..||++++.+.++||||+|++|+++|.+|+++++.. .+|...++.+.+|+++|++||||||
T Consensus 174 ~~--------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~wl~~gl~D~~ISR~ 238 (564)
T 3kfl_A 174 KV--------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNC-IVPEFRRREVIKTVEKGLFDLSISRK 238 (564)
T ss_dssp EE--------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred cc--------------ccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhCCCCCccccCc
Confidence 32 1247999999999999999999999999999987643 2477888899999999999999999
Q ss_pred ---ccCCCcccCCcCCCCceeeeeecccchHHHhccccchH---------H--HhhcCCCCCcceEEEEeccccchhHhH
Q 006368 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE---------W--EQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 258 ---~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~---------~--~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
++.||||||++ +++|+||||||+++|+|++..|+.+ | .+||| .+ +|++||||++||+++
T Consensus 239 ~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp--~d---v~~~GkDii~FH~~~ 311 (564)
T 3kfl_A 239 RESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWP--AD---VHVVGKDILKFHAIY 311 (564)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCS--CS---EEEEEGGGHHHHHTH
T ss_pred CCCCCCCCeecCCC--CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCc--cc---eEEEeecccchHHHH
Confidence 79999999976 7999999999999999986332432 7 89995 46 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
||++|+++|.+ +|+++++||||+.+|+|||||+||||+|.++++ .||+|++||||++..+.++|++|+++.+.+++|
T Consensus 312 wpa~L~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~-~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n 388 (564)
T 3kfl_A 312 WPAFLMSAELP--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK-EFGIDALKYFLMRESNFQDDGDYSDKNMVARLN 388 (564)
T ss_dssp HHHHHHHTTCC--CCSCEEEECCEEETTEECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHH
T ss_pred HHHHHHhCCCC--CCcEEEEcccEeeCCccccccCCCCCCHHHHHH-HcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHH
Confidence 99999999974 789999999999999999999999999999999 799999999999888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N 483 (648)
++++++++|+++|+.+++.. +++.+|... ...+.|++|++.+..+++.+.++|++++++.|++.|++|++.+|
T Consensus 389 ~~l~~~l~N~~~R~~~~~~~-----~~g~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n 461 (564)
T 3kfl_A 389 GELADTLGNLVSRCVAPKIN-----VNGMWPEPA--EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLN 461 (564)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 566666532 34578999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 563 (648)
+|++..+||.+.+.++.++.++++++.+++++++++|+||||++|++||++||++......|.+ ..++.++
T Consensus 462 ~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~---------~~~~~~~ 532 (564)
T 3kfl_A 462 AYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMEN---------YLFGIVK 532 (564)
T ss_dssp HHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGG---------SSSCCSC
T ss_pred HHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhH---------hhcccCC
Confidence 9999999999988777888899999999999999999999999999999999987543213433 1134578
Q ss_pred CCCccCCC---CCCCCCCChHHHHHHHHH
Q 006368 564 AGHKIGSP---NPLFKELKDDEVEFFRSK 589 (648)
Q Consensus 564 ~g~~l~~~---~~Lf~~i~~~~~~~~~~~ 589 (648)
+|++|+++ ++||+||+++++++++..
T Consensus 533 ~g~~~~~~~~~~~lf~r~~~~~~~~~~~~ 561 (564)
T 3kfl_A 533 PGTKIAGLAEGQVVFQKVTLPTEEGERSS 561 (564)
T ss_dssp TTCBCCCCCTTCCSSCCCCCC--------
T ss_pred CCCCcCCCCCCCCCcCCCCcchhhhhhhc
Confidence 89999998 999999998877776643
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-101 Score=865.79 Aligned_cols=515 Identities=24% Similarity=0.420 Sum_probs=443.6
Q ss_pred CCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH
Q 006368 13 PPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC 91 (648)
Q Consensus 13 ~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~ 91 (648)
+++.|... ++++|||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+||||+||+.+|+++|.+|++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~-~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~ 93 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYE-LIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLA 93 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHH-HHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHH
Confidence 44445443 458999999999999999999998 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccC
Q 006368 92 DKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYE 171 (648)
Q Consensus 92 ~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~ 171 (648)
+++.+.|++++++|||++|.|+||+++.|...++++|++|.++|+||++.+.+|||++|++++++++++..
T Consensus 94 ~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------- 164 (536)
T 4dlp_A 94 DRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------- 164 (536)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC---------
T ss_pred HHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999887521
Q ss_pred CCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccc
Q 006368 172 SARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 172 ~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
..|+ .|++||++++.+.++||||+|++|++.+.+++++++.. .+|....+.+.+|++++++
T Consensus 165 -~~g~-----------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~~l~~~l~ 225 (536)
T 4dlp_A 165 -ADGV-----------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGF-IMPAERRNEIVSFVKSGLK 225 (536)
T ss_dssp -TTSC-----------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHTCCC
T ss_pred -CCCC-----------------cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCc-cCcHHHHHHHHHHHhcCCC
Confidence 1233 35678889999999999999999999999999987642 2477888899999999999
Q ss_pred cceeeec-cCCCcccCCcCCCCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHH
Q 006368 252 VRCITRD-LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPST 327 (648)
Q Consensus 252 d~~IsR~-~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~ 327 (648)
||||||+ +.||+|||++ +++++||||||+++|++++ +|+ .+|++||| .+ +|++|+||++||+++||++
T Consensus 226 D~~ISR~~~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~~~~~~~~p--~d---v~~~G~D~~~fh~~~~~a~ 297 (536)
T 4dlp_A 226 DLSISRTTFDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTTDERWAYWP--AN---AHIIGKDISRFHAVYWPAF 297 (536)
T ss_dssp CEECEEC--CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTTSGGGGGCS--CS---EEEEEGGGHHHHHTHHHHH
T ss_pred ccCCccCCCcCCeeCCCC--CCCceEEeeCCcHHHHHhc-CCCCCchHHHhhCC--cc---eEEeechHHHHHHHHHHHH
Confidence 9999996 7899999976 7999999999999999986 675 36899995 45 8999999999999999999
Q ss_pred hhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHH
Q 006368 328 LLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (648)
Q Consensus 328 l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 407 (648)
|+++|.+ +|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++|+++.+.+++|++++
T Consensus 298 l~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 374 (536)
T 4dlp_A 298 LMSAQLP--LPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLA 374 (536)
T ss_dssp HHHTTCC--CCSCEEEECCEEC------------CCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCC
T ss_pred HHHCCCC--CCcEEEeeeeEeeCCceecccCCCCCCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999875 789999999999999999999999999999999 7999999999998788899999999999999999999
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
++++|+++|+.+++.+ ++++.+|.. ....+.|+++++.+..+++.+.++|++|+++.|++.+++|++.+|+|++
T Consensus 375 ~~l~N~~~R~~~~~~~----~~~~~~p~~--~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~ 448 (536)
T 4dlp_A 375 NDLGNLAQRSLSMIAK----NCEGKVPQP--GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFA 448 (536)
T ss_dssp CCCHHHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hcCCCCCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 566666643 2346789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCc
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 567 (648)
..+||.+.+++..++.++++++.++++++++||+||||++|++||++||++... ..|.+ ...+ .+++|++
T Consensus 449 ~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~-~~~~~--------~~~~-~~~~g~~ 518 (536)
T 4dlp_A 449 GQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADK-RQFAD--------VLAS-PLAGGTD 518 (536)
T ss_dssp HHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTS-CSTHH--------HHHC-CCCTTCB
T ss_pred hCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCccc-cCHHH--------hhhc-cCCCCCC
Confidence 999999987677778889999999999999999999999999999999987543 22322 0112 5778999
Q ss_pred cCCCCCCCCCCChHHH
Q 006368 568 IGSPNPLFKELKDDEV 583 (648)
Q Consensus 568 l~~~~~Lf~~i~~~~~ 583 (648)
|+++.+||+||++++.
T Consensus 519 ~~~~~~lf~ri~~~~~ 534 (536)
T 4dlp_A 519 LPAPQPVFPRYVEADE 534 (536)
T ss_dssp CCCCCCSSCCCC----
T ss_pred cCCCCCCCCCCCCccc
Confidence 9999999999997643
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-95 Score=816.45 Aligned_cols=504 Identities=27% Similarity=0.444 Sum_probs=447.0
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.|++.++||||+|||||.+||||+|+ ++.+|+++||+|++||+|.|++|+|+||+||+.+|+++|++|+++|+++.+.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~-~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYE-YIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46788999999999999999999998 67799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc-ccCCCCccccCCCCCcc
Q 006368 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQ 177 (648)
Q Consensus 99 ~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~ 177 (648)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.+|||+.|++|+++.+++ |+
T Consensus 88 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~--------------- 152 (524)
T 2x1l_A 88 QRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP--------------- 152 (524)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT---------------
T ss_pred HHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999998874 32
Q ss_pred ccccCCCCCccccCCCcCC-CCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceee
Q 006368 178 CENCGKLLNATDLKDPKCK-VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~-~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~Is 256 (648)
|| +.|+ +||++++.+.++||||++++|++++.+++++++.. .+|...++.+.+|+.++++|||||
T Consensus 153 ---~G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~-i~p~~~~~~~~~~~~~~l~Dw~iS 218 (524)
T 2x1l_A 153 ---DG----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF-IGPDARRNEIVSFVSGGLKDLSIS 218 (524)
T ss_dssp ---TS----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG-EESHHHHHHHHHHHTTCCCCEECE
T ss_pred ---CC----------CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHHcCCcccceE
Confidence 12 2477 88999999999999999999999999999875421 247788888899998899999999
Q ss_pred ecc-CCCcccCCcCCCCceeeeeecccchHHHhccccch----HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhc
Q 006368 257 RDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (648)
Q Consensus 257 R~~-~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~----~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~ 331 (648)
|++ .||+|+|.+ +++++|||||++++|++.. +|+. .|..||| .| +|++|+||++||+++|||+++++
T Consensus 219 Rqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~l~~~ 290 (524)
T 2x1l_A 219 RTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTESESFRRYWP--AD---LHMIGKDIIRFHTVYWPAFLMSA 290 (524)
T ss_dssp ESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTTSHHHHHHCS--CS---EEEEEGGGHHHHHTHHHHHHHHH
T ss_pred CCCCCcCccCCCC--CCCEEEEecCCchHHHHHc-CCCCCchHHHHhhCC--Ce---EEEEeechhHhHHHHHHHHHHHC
Confidence 985 699999955 6899999999999999874 6653 6889994 56 89999999999999999999998
Q ss_pred CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHh
Q 006368 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (648)
Q Consensus 332 g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 411 (648)
|. ++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++||++.+.+..|+++.++++
T Consensus 291 g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 291 GL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD-TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp TC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH-HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred CC--CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 86 4789999999999999999999999999999999 79999999999987888999999999999998888999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh
Q 006368 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (648)
Q Consensus 412 N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (648)
|+++|+..++.+ ++++.+|.. ....+.|++++..+..+.+.+.++|++|+++.|+..+++|++.+|+|++..+|
T Consensus 368 n~~~r~~~~~~~----~~~~~~~~~--~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 368 NLAQRSLSMVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----hcCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998876 344444422 12456789999999999999999999999999999999999999999999999
Q ss_pred hhhccC----ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCc
Q 006368 492 WKLYKE----DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (648)
Q Consensus 492 w~l~k~----~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 567 (648)
|.+.+. +..+++++++++.++++++++||+||||++|++||++||.+... .+|.+ . . ..+++|++
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~-~~~~~-------~-~--~~~~~~~~ 510 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDE-RDFSA-------I-A--NRIKPGTS 510 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTS-CSGGG-------G-S--SCCCTTCB
T ss_pred hhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCccc-cchhH-------h-h--hcCCCCCC
Confidence 998765 23456778899999999999999999999999999999986432 23332 0 0 13567999
Q ss_pred cCCCCCCCCCCCh
Q 006368 568 IGSPNPLFKELKD 580 (648)
Q Consensus 568 l~~~~~Lf~~i~~ 580 (648)
|+++.+||+||++
T Consensus 511 ~~~~~~lf~~~~~ 523 (524)
T 2x1l_A 511 LPAPSGIFPRYQN 523 (524)
T ss_dssp CCCCCCSSCCCC-
T ss_pred CCCCCCCCCCCCC
Confidence 9999999999975
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-93 Score=798.21 Aligned_cols=493 Identities=25% Similarity=0.448 Sum_probs=439.4
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||+|+|||||.+||||+|+ ++.+|+++||+|++||+|.+++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYT-TVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||+++.|.+.++++|++|+++|+||++.+.++||+.|++|+++.+
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~---------------------- 138 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE---------------------- 138 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT----------------------
T ss_pred HHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchh----------------------
Confidence 9999999999999999999999999999999999999999999999999999988754
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee---
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR--- 257 (648)
++++.|++||.+++.+.+++|||++++|++.+.+++++++.+ ..|...++.+.+|++++++||||||
T Consensus 139 ---------l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~l~Dw~iSRp~~ 208 (500)
T 2d5b_A 139 ---------LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDL-IRPEGYRNEVLAMLAEPIGDLSISRPKS 208 (500)
T ss_dssp ---------SBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTS-EESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ---------ccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHhcCCCCeecccccc
Confidence 334567788999999999999999999999999999987632 2377778888999999999999999
Q ss_pred ccCCCcccCCcCCCCceeeeeecccchHHHhccccch--HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCc
Q 006368 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (648)
Q Consensus 258 ~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~--~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~ 335 (648)
+..||+|+|.+ +++++||||||+++|++.. +|+. ++.+||+ .| +|++|+||++||+++||++++++|.
T Consensus 209 ~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~~~~~g~-- 278 (500)
T 2d5b_A 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPEGEAYRTFWP--HA---WHLIGKDILKPHAVFWPTMLKAAGI-- 278 (500)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTTCHHHHHHGG--GE---EEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred cccCccccCCC--CCCeeEEccccchhhHHHc-CCCCCchHHHcCC--Ce---EEEEeechhhhHHHHHHHHHHHcCC--
Confidence 56799999976 6899999999999999864 6753 3788895 45 8999999999999999999999886
Q ss_pred ccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 336 TLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 336 ~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
++|+++++||||+. +|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++||++.+.++.|+.+.++++|++
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~ 357 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998 99999999999999999999 79999999999987788999999999999998889999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+.+++.+ .+++.+|... +++++..+..+.+.+.++|++|+++.|+..++++++.+|+|++..+||.+
T Consensus 358 ~r~~~~~~~----~~~~~~~~~~-------~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~ 426 (500)
T 2d5b_A 358 QRTRAMLFR----FAEGRIPEPV-------AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 426 (500)
T ss_dssp HHHHHHHHH----HSTTBCCCCC-------CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH----hcCCCCCchh-------HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 999988766 3444443211 14677888889999999999999999999999999999999999999988
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+++..+++++++++.+++++++++|+||||++|++||++||.+. . .+|.+ ...|+.+++|++|+++.+|
T Consensus 427 ~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~-~~~~~--------~~~~~~~~~~~~~~~~~~l 496 (500)
T 2d5b_A 427 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-E-VRLEE--------AERWGLAEPRPIPEEAPVL 496 (500)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-S-CCGGG--------GGSSCCSCCCBCCSCCCCS
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCc-c-cChhh--------hhhcccCCCCCCCCCCCCC
Confidence 765555677889999999999999999999999999999999764 2 23432 1135567789999999999
Q ss_pred CCCC
Q 006368 575 FKEL 578 (648)
Q Consensus 575 f~~i 578 (648)
|+||
T Consensus 497 f~~~ 500 (500)
T 2d5b_A 497 FPKK 500 (500)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9986
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-93 Score=791.48 Aligned_cols=489 Identities=28% Similarity=0.463 Sum_probs=407.9
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||+|+|||||.+||||+|+ ++.+|+++||+|++||+|.+++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYT-TIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHH-HHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++.
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~-------------------- 142 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA-------------------- 142 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee--
Q 006368 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-- 257 (648)
Q Consensus 181 cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-- 257 (648)
+ +.|++||.+++.+.+++|||+|++|++++.+++++++.. ..|...++.+.+|+++|++||||||
T Consensus 143 -----------~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~Dw~isR~~ 210 (497)
T 2csx_A 143 -----------EDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEF-IQPDYRRNEIISFVKQGLKDLSVTRPR 210 (497)
T ss_dssp --------------------------CCEEEEECTTSSHHHHHHHHHHCTTS-BCSHHHHHHHHHHHHHCCCCEECEEET
T ss_pred -----------cCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCcHHHHHHHHHHHhcCCccccccccC
Confidence 2 456778999999999999999999999999999987642 2366667778899998999999999
Q ss_pred -ccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcc
Q 006368 258 -DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336 (648)
Q Consensus 258 -~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~ 336 (648)
+..||+|+|.+ +++++||||||+++|+|++.. +..+|| |.| +|++|+||++||+++||++++++|. +
T Consensus 211 ~~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~~---~~~~~~--p~d---i~~~G~D~~~~H~~~~~a~l~~~g~--~ 278 (497)
T 2csx_A 211 SRVKWGIPVPFD--PEHTIYVWFDALFNYISALED---KVEIYW--PAD---LHLVGKDILRFHTVYWPAFLMSLGY--E 278 (497)
T ss_dssp TTCCSSEEETTE--EEEEECSHHHHHTHHHHTTTT---THHHHC--SCS---CEEEEGGGHHHHHTHHHHHHHHHTC--C
T ss_pred CCCCCceecCCC--CCceEEEecccchhhcccCCC---cchhhC--Cce---EEEeecchhHhHHHHHHHHHHHcCC--C
Confidence 56899999976 689999999999999997621 112788 456 8999999999999999999999886 4
Q ss_pred cCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHH
Q 006368 337 LMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINR 416 (648)
Q Consensus 337 ~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R 416 (648)
+|+++++||||+.+|+|||||+||+|+|.++++ +||+|++|||+++.++.++|++||++.+.++.|++++++++|+++|
T Consensus 279 ~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R 357 (497)
T 2csx_A 279 LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSR 357 (497)
T ss_dssp CCSCEEEECCEESSSSBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcEEEECcEEEeCCceeCCcCCCCCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998 7999999999998788899999999999999899999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 006368 417 VLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK 496 (648)
Q Consensus 417 ~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k 496 (648)
+.+++.+ .+++.++ .+.|++++..+..+.+.+.++|++|+++.|+..+++|++.+|+|++..+||.+.+
T Consensus 358 ~~~~~~~----~~~~~~~-------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~ 426 (497)
T 2csx_A 358 VVNMAHK----FLGGEVS-------GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNK 426 (497)
T ss_dssp HHHHHHH----HSTTCBC-------CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHH----hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcc
Confidence 9999876 2333332 1124578899999999999999999999999999999999999999999998876
Q ss_pred C-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCCC
Q 006368 497 E-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLF 575 (648)
Q Consensus 497 ~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf 575 (648)
+ +..+++++++++.+++++++++|+||||++|++||++||.+. ..|.+ . .|..+ |++|+++++||
T Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~---~~~~~-------~--~~~~~--~~~~~~~~~lf 492 (497)
T 2csx_A 427 ERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKE---FLKEL-------K--PYSKN--TYKLGERKILF 492 (497)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSC---CCSSC-------C--SCCCS--CBCCCCCCCSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCc---cchhh-------c--ccccC--CCcCCCCCCCC
Confidence 3 445677889999999999999999999999999999999753 12322 1 23333 99999999999
Q ss_pred CCCCh
Q 006368 576 KELKD 580 (648)
Q Consensus 576 ~~i~~ 580 (648)
+||++
T Consensus 493 ~~~~~ 497 (497)
T 2csx_A 493 PKREG 497 (497)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99963
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-81 Score=734.45 Aligned_cols=496 Identities=20% Similarity=0.276 Sum_probs=399.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCH----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP---------- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~---------- 87 (648)
.++++|+|++|+|||||.|||||+++ ++.+|+++||+||+||+|+|++|+|+||+||+.+|+++ |.++
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~-~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQA-RSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHH-HHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHh-HHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHH
Confidence 36678999999999999999999999 56799999999999999999999999999999999996 8764
Q ss_pred ------HHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.++++++.+.+++++++|| +++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|++|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence 5678888999999999999 67788999999999999999999999999999999999999999999999998
Q ss_pred -ccc--------------------------------CCC-----------Cc----------------------------
Q 006368 160 -EGT--------------------------------CPF-----------EG---------------------------- 167 (648)
Q Consensus 160 -~g~--------------------------------cp~-----------~~---------------------------- 167 (648)
+|. .|. |.
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred hcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCc
Confidence 321 111 00
Q ss_pred --------------------------------------------------cccCCC---------CCccccccCCCCCc-
Q 006368 168 --------------------------------------------------CNYESA---------RGDQCENCGKLLNA- 187 (648)
Q Consensus 168 --------------------------------------------------c~~~~~---------~g~~c~~cg~~l~~- 187 (648)
|+.+|. .-..|+.||++.+.
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~ 353 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP 353 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGG
T ss_pred EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccC
Confidence 111000 00124556765441
Q ss_pred --------------ccc--------------CCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHH-
Q 006368 188 --------------TDL--------------KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA- 238 (648)
Q Consensus 188 --------------~el--------------~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~- 238 (648)
++| ..|+|+|||++++++.++|||++++++++++.+++++.... |+..
T Consensus 354 ~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~---P~~~~ 430 (821)
T 1ile_A 354 FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWV---PPHIK 430 (821)
T ss_dssp GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEES---SGGGT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEE---Cchhh
Confidence 112 25899999999999999999999999999999999886543 3333
Q ss_pred HHHHHHHHhcccccceeeeccCCCcccCCcCC------------------------------------------------
Q 006368 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------------------------------------ 270 (648)
Q Consensus 239 ~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------------------------------------ 270 (648)
.+++.+||+ +++|||||||+.||+|||.+.+
T Consensus 431 ~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~ 509 (821)
T 1ile_A 431 EGRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 509 (821)
T ss_dssp TTTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEE
T ss_pred HhHHHHHHh-CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchh
Confidence 235678996 6999999999999999995310
Q ss_pred -CCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhh-cCCCcccCceEEee
Q 006368 271 -KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLG-TGENWTLMKTISVT 344 (648)
Q Consensus 271 -~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a-~g~~~~~p~~~~~h 344 (648)
+.+|+|||||+.+.|++.. +|+ +.|..|| |.| +|++|+||++||....-++..+ .|. ++|+++++|
T Consensus 510 r~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~--P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~--~pf~~v~~h 581 (821)
T 1ile_A 510 RVPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESF--PAD---FIAEGIDQTRGWFNSLHQLGVMLFGS--IAFKNVICH 581 (821)
T ss_dssp ECSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHS--SBS---BEEEEGGGGGTHHHHHHHHHHHHHSS--CSBSEEEEE
T ss_pred hcccccceecccccchHhhc-CCCccchHHHhhcC--Ccc---cccchhhhhccHHHHHHHHHHHhcCC--CCcceEEEE
Confidence 1258999999999888754 554 4588899 456 7999999999864332222222 243 367999999
Q ss_pred ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 345 EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 345 g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
||++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++||++.+.+++ +++.++++|+++|+..+...
T Consensus 582 g~vl~~~G~KMSKS~GNvV~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~~ 659 (821)
T 1ile_A 582 GLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYANL 659 (821)
T ss_dssp CCEECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHHH
T ss_pred eeEECCCCCCCCccCCCCCCHHHHHH-HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 9987 699999999999999999998 79999999999998889999999999998844 56899999999997643211
Q ss_pred CCCCCCCCCCC-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhh--hhhhccC
Q 006368 424 PPGQGYGSIVP-DA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ--FWKLYKE 497 (648)
Q Consensus 424 ~~~~~~~~~~p-~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~--pw~l~k~ 497 (648)
. .+. | .. ........|+++++.+..+.+.+.++|++|+++.|+..|++++ ..+|.|++..+ ||...+.
T Consensus 660 ~---~~~---~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~ 733 (821)
T 1ile_A 660 D---RPD---LKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA 733 (821)
T ss_dssp H---CCC---TTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTT
T ss_pred c---cCC---cccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 0 111 1 00 0012356789999999999999999999999999999999999 67999998875 5876532
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 498 ~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..+ .+++.++.++++.+++||+||||++|++||++|+.
T Consensus 734 -~~r-~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~ 771 (821)
T 1ile_A 734 -LDR-EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVR 771 (821)
T ss_dssp -SST-THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTT
T ss_pred -HHH-HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccc
Confidence 122 24566777889999999999999999999999985
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-80 Score=715.82 Aligned_cols=486 Identities=19% Similarity=0.258 Sum_probs=400.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cCCCHH------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DNCSPK------ 88 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g~~~~------ 88 (648)
.++++|+|++|||||||.|||||+++ ++.+||++||+||+||+|+|++|+|+||.+|+.++++ +|+++.
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~-~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~ 109 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALD-NSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTH
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHH-HHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHH
Confidence 35678999999999999999999999 5669999999999999999999999999999999874 476654
Q ss_pred ------HHHHHHHHHHHHHHhhcCcccccccC---CCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 89 ------EICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 89 ------e~~~~~~~~~~~~~~~l~i~~D~f~r---T~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
++++++...+++++++||+++| |.| |+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+|.+|
T Consensus 110 f~~~~~~~~~~~~~~~~~q~~rlG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV 188 (862)
T 1gax_A 110 FLERVWQWKEESGGTILKQLKRLGASAD-WSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEV 188 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-GGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccc
Confidence 6789999999999999999998 344 999999999999999999999999999999999999999999987
Q ss_pred c-----c------------------------------------------------cCCCCcccc----------------
Q 006368 160 E-----G------------------------------------------------TCPFEGCNY---------------- 170 (648)
Q Consensus 160 ~-----g------------------------------------------------~cp~~~c~~---------------- 170 (648)
+ | .||. |+.
T Consensus 189 ~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~--~~~~ipii~~~~V~~~~GT 266 (862)
T 1gax_A 189 ETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL--TEVWIPILADPAVEKDFGT 266 (862)
T ss_dssp EECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTT--CCCBCCEEECTTCCTTSSS
T ss_pred ccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCC--CCCeeeEEeccccccCCCC
Confidence 5 1 2554 221
Q ss_pred ---------------------------CCCCCcccccc--CCCC------------------------CccccCCCcCCC
Q 006368 171 ---------------------------ESARGDQCENC--GKLL------------------------NATDLKDPKCKV 197 (648)
Q Consensus 171 ---------------------------~~~~g~~c~~c--g~~l------------------------~~~el~~~~~~~ 197 (648)
-+..|..|++| |.+- .+..+..|+|+|
T Consensus 267 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R 346 (862)
T 1gax_A 267 GALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSR 346 (862)
T ss_dssp SEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETT
T ss_pred cceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecC
Confidence 13567888888 6421 112346799999
Q ss_pred CCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCC-Cceee
Q 006368 198 CRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-EKVFY 276 (648)
Q Consensus 198 ~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~-~~v~y 276 (648)
||++++.+.++|||++++++++.+.+++++.+. ..+|++..++..+||+ +++|||||||+.||+|||.+.++ ++++|
T Consensus 347 ~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pIP~w~~~~~~~i~ 424 (862)
T 1gax_A 347 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIPAWYCEDCQAVN 424 (862)
T ss_dssp TCSBCCEEECCEEEECHHHHHHHHHHHHHHTCC-EESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCCCCEEETTTCCEE
T ss_pred CCCeEEEEecceEEEEhHHHHHHHHHHHHcCCc-eEcCHHHHHHHHHHHh-cccceeEecccCCCcccCceecCCCCEEE
Confidence 999999999999999999999999999975442 2357788888999997 59999999999999999975432 24455
Q ss_pred e------------------------------eecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 277 V------------------------------WFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 277 V------------------------------WfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
| |||+.+.|++.. +|+ ++++.|| |.| +|++|+||++||...
T Consensus 425 v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~-~~p~~~~~~~~~~--P~d---~~v~G~Dii~~W~a~ 498 (862)
T 1gax_A 425 VPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFY--PGD---VLVTGYDILFLWVSR 498 (862)
T ss_dssp CCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGG-TTTSCCHHHHHSC--SBS---CEEEEGGGTTTTHHH
T ss_pred EeccccccccchhhhhcCchheecCCcccceeeccCCcchhhc-cCCCchHHHHhhC--Cce---EEecCccccccHHHH
Confidence 5 556555666543 665 3588888 457 799999999986544
Q ss_pred HHHHhh-hcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 324 FPSTLL-GTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 324 ~pa~l~-a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
.-++.+ ..|. .|++++++||++. .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+...
T Consensus 499 ~~~~~~~~~g~--~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 499 MEVSGYHFMGE--RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp HHHHHHHHSSS--CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred HHHHHHHhcCC--CcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 333322 2232 3569999999997 899999999999999999999 7999999999998778899999999999987
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS-- 479 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~-- 479 (648)
+++.++++|+++.+...+.. +. |.. ......|+++++.++.+++.+.++|++|+|+.|+..+++|+
T Consensus 576 --~~f~nkl~N~~rf~~~~~~~-----~~---~~~--~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~ 643 (862)
T 1gax_A 576 --RNFANKLYNAARFVLLSREG-----FQ---AKE--DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWS 643 (862)
T ss_dssp --HHHHHHHHHHHHHHHHHSSS-----CC---CCB--CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcccC-----CC---Ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56999999997655433221 21 111 12457899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 480 SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 480 ~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
..+|.|++..+||... + ..++..++.++++.+..||+||||++|++||+.|+
T Consensus 644 ~~~n~Yie~~k~~l~~-~----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 695 (862)
T 1gax_A 644 EFCDWYLEAAKPALKA-G----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT 695 (862)
T ss_dssp HTTTTHHHHHHHHHHT-T----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HhhHHHHHHcchhhhc-c----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 4699999999998532 2 23456778889999999999999999999999997
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-78 Score=707.49 Aligned_cols=494 Identities=17% Similarity=0.238 Sum_probs=402.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCH-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP----------- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~----------- 87 (648)
.++++|+|++|||||||.|||||+++ ++.+||++||+||+||+|.|++|+|+||+||+.+|+++|++|
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n-~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~ 123 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALN-KILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHH-HHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHH
Confidence 46778999999999999999999999 677999999999999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc---c
Q 006368 88 -KEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---G 161 (648)
Q Consensus 88 -~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---g 161 (648)
.++++++.+.++++|++||+++ |++++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|.+|+ +
T Consensus 124 ~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~ 203 (917)
T 1ffy_A 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDK 203 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccc
Confidence 6789999999999999999975 689999999999999999999999999999999999999999999999986 1
Q ss_pred c----------------------------CCC--Ccc----ccCC------------------------------CCC--
Q 006368 162 T----------------------------CPF--EGC----NYES------------------------------ARG-- 175 (648)
Q Consensus 162 ~----------------------------cp~--~~c----~~~~------------------------------~~g-- 175 (648)
+ .|+ +|| -.++ .+-
T Consensus 204 ~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 283 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 283 (917)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceee
Confidence 1 121 111 0000 000
Q ss_pred ccccccCCCCCcc-------------------------------------------------------------------
Q 006368 176 DQCENCGKLLNAT------------------------------------------------------------------- 188 (648)
Q Consensus 176 ~~c~~cg~~l~~~------------------------------------------------------------------- 188 (648)
..|+.||..|...
T Consensus 284 ~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 363 (917)
T 1ffy_A 284 LEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFE 363 (917)
T ss_dssp CCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCS
T ss_pred eeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccC
Confidence 2233344321100
Q ss_pred -------------c--------------cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHH
Q 006368 189 -------------D--------------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQA 241 (648)
Q Consensus 189 -------------e--------------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (648)
+ ...|+|+|||++++++.++|||++++++++++.+++++... .|....++
T Consensus 364 G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~---~P~~~~~r 440 (917)
T 1ffy_A 364 GMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNF---KVNWGKTR 440 (917)
T ss_dssp SSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEE---SSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcc---cCHHHHHH
Confidence 0 12489999999999999999999999999999999997553 37778889
Q ss_pred HHHHHhcccccceeeeccCCCcccCCcCCC-Cc------------------eeeeeecccchHHHhc---------cccc
Q 006368 242 THAWLKEGLKVRCITRDLKWGVPVPLERFK-EK------------------VFYVWFDAPIGYVSIT---------SCYT 293 (648)
Q Consensus 242 ~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~-~~------------------v~yVWfDa~~~yis~~---------~~~~ 293 (648)
+.+||++ ++|||||||+.||+|||.+.++ ++ .+|+|||+..+|+... ..+.
T Consensus 441 ~~~~l~~-~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~ 519 (917)
T 1ffy_A 441 IYNMVRD-RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFT 519 (917)
T ss_dssp HHHHHHH-CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCE
T ss_pred HHHHHhc-CccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCccccc
Confidence 9999986 8999999999999999985432 33 4589999888877521 0121
Q ss_pred h------HH-------H-------h-hcCCCCCcceEEEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-c
Q 006368 294 N------EW-------E-------Q-WWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y 349 (648)
Q Consensus 294 ~------~~-------~-------~-~w~~p~~~~~i~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~ 349 (648)
. -| . . .| |.| +|+.|+||++ ||..+++++.+. |. .|++++++|||++ .
T Consensus 520 ~~~D~lD~WfdSg~~~~~~l~~~~~~~~--P~D---l~~~G~D~~r~wf~~~l~~s~~~~-g~--~Pfk~v~~hG~V~d~ 591 (917)
T 1ffy_A 520 KETDIMDVWFDSGSSHRGVLETRPELSF--PAD---MYLEGSDQYRGWFNSSITTSVATR-GV--SPYKFLLSHGFVMDG 591 (917)
T ss_dssp ECCCEECHHHHHHTHHHHTTTTSTTCCS--SBS---EEEEEGGGGTTHHHHHHHHHHHHH-SS--CSBSEEEEECCEECT
T ss_pred ccCCCcCeecCCCCCHHHHcCCchhcCC--Cce---EEEEEecccccHHHHHHHHHHHhh-CC--CcccceeEeeeEEcC
Confidence 0 01 0 0 13 456 8999999995 889999888753 43 3579999999998 4
Q ss_pred CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCC
Q 006368 350 ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGY 429 (648)
Q Consensus 350 ~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~ 429 (648)
+|+|||||+||+|+|.++++ +||+|++|||+++ +++++|++||++.+... ++..++|.|++++++..+.. +
T Consensus 592 ~G~KMSKSlGNvV~P~dvi~-~yGaDalR~~lls-~~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~-----~ 662 (917)
T 1ffy_A 592 EGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNIND-----F 662 (917)
T ss_dssp TSCCCCSSSSCCCCHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTT-----C
T ss_pred CCcCcccccCCcCChHHHHH-hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhc-----c
Confidence 99999999999999999999 7999999999998 88899999999999876 56789999999998776543 3
Q ss_pred C---CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhhhhhhhccC-ChhhHH
Q 006368 430 G---SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EGNAYLQESQFWKLYKE-DQPSCS 503 (648)
Q Consensus 430 ~---~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~--~~N~yi~~~~pw~l~k~-~~~~~~ 503 (648)
+ +.++. ....+.|++++..++.+++.+.++|++|+|+.|++.+++|+. .+|.|++..+||..... +.....
T Consensus 663 ~~~~~~v~~---~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~ 739 (917)
T 1ffy_A 663 NPDTDSIPE---SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRR 739 (917)
T ss_dssp CHHHHCCCG---GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHH
T ss_pred CcccccCCc---cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHH
Confidence 2 11221 124578999999999999999999999999999999999997 68999999999865432 222334
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 504 IVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 504 ~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++..++..++..+..||+||||++|++||+.|+.
T Consensus 740 ~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 740 SMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 5566777889999999999999999999999974
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-75 Score=680.89 Aligned_cols=483 Identities=19% Similarity=0.275 Sum_probs=387.1
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------- 83 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------- 83 (648)
++++|+|++|+|||||.|||||+++ ++.+|+++||+||+||+|.+++|+|+||+||+..|++.
T Consensus 32 ~~~~~~i~~~~Py~nG~lHiGH~~~-~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g 110 (810)
T 1wkb_A 32 KEKKFYITVAFPYLSGHLHVGHART-YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYK 110 (810)
T ss_dssp GGGEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCCcEEEEeCCCCCCCCCccccchh-HHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhC
Confidence 4678999999999999999999999 57799999999999999999999999999999887642
Q ss_pred --------CCCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcC
Q 006368 84 --------NCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCK 151 (648)
Q Consensus 84 --------g~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 151 (648)
+..|.++++++.+.+++++++|||++| .+++|++ +.|.+.++++|.+|+++|+||++.+.++||+.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 111 VPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp CCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 357899999999999999999999998 6778999 9999999999999999999999999999999999
Q ss_pred ccccccccccc-C----------------------------CC-----------CccccC-----C----C---------
Q 006368 152 RFLADRLVEGT-C----------------------------PF-----------EGCNYE-----S----A--------- 173 (648)
Q Consensus 152 ~~l~d~~v~g~-c----------------------------p~-----------~~c~~~-----~----~--------- 173 (648)
++|++.+|+.. | |. |.|.|. + .
T Consensus 191 t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~ 270 (810)
T 1wkb_A 191 TPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAA 270 (810)
T ss_dssp EECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHH
T ss_pred CCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHH
Confidence 99999987531 1 11 111100 0 0
Q ss_pred ----C------------C-------------------------------------------------------ccccccC
Q 006368 174 ----R------------G-------------------------------------------------------DQCENCG 182 (648)
Q Consensus 174 ----~------------g-------------------------------------------------------~~c~~cg 182 (648)
+ | ++|..||
T Consensus 271 ~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~ 350 (810)
T 1wkb_A 271 YKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYD 350 (810)
T ss_dssp HHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCS
T ss_pred HHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcC
Confidence 0 0 1233334
Q ss_pred CC---------C-----------------------Ccc------------------------------------------
Q 006368 183 KL---------L-----------------------NAT------------------------------------------ 188 (648)
Q Consensus 183 ~~---------l-----------------------~~~------------------------------------------ 188 (648)
-. . ++.
T Consensus 351 l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~~ 430 (810)
T 1wkb_A 351 IDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKE 430 (810)
T ss_dssp CCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHHH
T ss_pred CChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhHHHHHHH
Confidence 21 0 000
Q ss_pred -----------ccC-CCcCCCCCCCcEEe-eccceeeechh--hHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccc
Q 006368 189 -----------DLK-DPKCKVCRNAPQIR-DTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253 (648)
Q Consensus 189 -----------el~-~~~~~~~g~~~~~~-~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~ 253 (648)
++. .|+|++||++++.+ .++||||++++ +++.+.+++++... +|.+..+++.+|++ +++||
T Consensus 431 L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~---~P~~~~~~~~~~l~-~l~Dw 506 (810)
T 1wkb_A 431 MLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKI---LPETRRAQFEAIID-WLDKK 506 (810)
T ss_dssp HHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEE---ESGGGHHHHHHHHH-HCCCE
T ss_pred HHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEE---ECcchhchHHHHhh-cccCc
Confidence 001 38899999999988 79999999996 99999999987653 46666778899997 69999
Q ss_pred eeeeccCCCcccCCc------CCCCceeeeeecccchHHHh-----------------------------------cccc
Q 006368 254 CITRDLKWGVPVPLE------RFKEKVFYVWFDAPIGYVSI-----------------------------------TSCY 292 (648)
Q Consensus 254 ~IsR~~~WGi~vP~~------~~~~~v~yVWfDa~~~yis~-----------------------------------~~~~ 292 (648)
||||++.||+|+|.+ .+.+.++|||+++..+|++. ..++
T Consensus 507 ~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~ 586 (810)
T 1wkb_A 507 ACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGI 586 (810)
T ss_dssp ECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSC
T ss_pred cccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCccccchhhhCC
Confidence 999999999999953 23467999999998877651 0112
Q ss_pred c--------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccCh
Q 006368 293 T--------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364 (648)
Q Consensus 293 ~--------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~ 364 (648)
+ ++|+.|| |.| +|++|+||++||..+|.++..++--..++|+++++||||+.+|+|||||+||+|+|
T Consensus 587 ~~~~~~~~~~~~~~~~--p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p 661 (810)
T 1wkb_A 587 PAEIIHEMKEEFEYWY--PLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNF 661 (810)
T ss_dssp CHHHHHHHHHHHHHHC--SCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBH
T ss_pred CHHHHHhhHHHHHhhC--Cce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCH
Confidence 2 2356677 456 89999999999999985443332111246799999999999999999999999999
Q ss_pred hhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHH
Q 006368 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQL 444 (648)
Q Consensus 365 ~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~ 444 (648)
.++++ .||+|++||||++.+++++|++||++.+... .++.+++.|+++++.... .|.. ......
T Consensus 662 ~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~~-----------~~~~--~~~~~~ 725 (810)
T 1wkb_A 662 IDAIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEYE-----------VKGN--VELKDI 725 (810)
T ss_dssp HHHHH-HHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHTCC-----------CCSC--CCCCHH
T ss_pred HHHHH-HcChHHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcc-----------Cccc--ccCCHH
Confidence 99999 7999999999997788999999999988775 556777777776654310 1111 123467
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 006368 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPF 523 (648)
Q Consensus 445 d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~ 523 (648)
|++++..+..+.+.+.++|++|+++.|+..+ +.+++.+|+|++..++ .+. ..+..++.++++.+++||+||
T Consensus 726 d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~-----~~~---~~~~~~l~~~l~~l~~lLaP~ 797 (810)
T 1wkb_A 726 DRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYVLRTLADVWVRLMAPF 797 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcC-----cch---hHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999865 6999999999998763 111 223567889999999999999
Q ss_pred chHHHHHHHHHhC
Q 006368 524 MPSFSVEVNKQLN 536 (648)
Q Consensus 524 ~P~~s~~i~~~L~ 536 (648)
||++|++||++||
T Consensus 798 ~P~~aEelw~~Lg 810 (810)
T 1wkb_A 798 TPHICEELWEKLG 810 (810)
T ss_dssp SHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999986
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-73 Score=669.86 Aligned_cols=482 Identities=19% Similarity=0.276 Sum_probs=384.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------------C--
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------N-- 84 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------g-- 84 (648)
++|+|++|+|||||.|||||+++ ++.+||++||+||+||+|+|++|+|+||+||+..|++. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~ 112 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHART-YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVP 112 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHH-HHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHH-HHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCC
Confidence 68999999999999999999999 57799999999999999999999999999999888652 3
Q ss_pred -------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcc
Q 006368 85 -------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRF 153 (648)
Q Consensus 85 -------~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 153 (648)
..|.++++++...+++++++||+++| ..+.|++ |.|.+.++++|.+|+++|+||++...++||+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~ 192 (967)
T 1wz2_A 113 EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192 (967)
T ss_dssp HHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCC
Confidence 36889999999999999999999998 4677999 999999999999999999999999999999999999
Q ss_pred ccccccccc-----------------------------CCC-----------CccccC----------------------
Q 006368 154 LADRLVEGT-----------------------------CPF-----------EGCNYE---------------------- 171 (648)
Q Consensus 154 l~d~~v~g~-----------------------------cp~-----------~~c~~~---------------------- 171 (648)
|++.+|+.. .|+ |.|.|.
T Consensus 193 Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~ 272 (967)
T 1wz2_A 193 LGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYK 272 (967)
T ss_dssp CCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHH
T ss_pred cchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHH
Confidence 999977531 111 111000
Q ss_pred -----------------------------------------------------------C---------------CCC--
Q 006368 172 -----------------------------------------------------------S---------------ARG-- 175 (648)
Q Consensus 172 -----------------------------------------------------------~---------------~~g-- 175 (648)
| .+|
T Consensus 273 ~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~ 352 (967)
T 1wz2_A 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352 (967)
T ss_dssp HHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCC
T ss_pred HHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCc
Confidence 0 000
Q ss_pred ------------------------ccccccC-------------------------CCCCc-------------------
Q 006368 176 ------------------------DQCENCG-------------------------KLLNA------------------- 187 (648)
Q Consensus 176 ------------------------~~c~~cg-------------------------~~l~~------------------- 187 (648)
+.|+.|| .+...
T Consensus 353 ~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~L~ 432 (967)
T 1wz2_A 353 PRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEML 432 (967)
T ss_dssp CCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHHHH
T ss_pred hhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHHHHHHHH
Confidence 0111111 11000
Q ss_pred --------cccC-CCcCCCCCCCcEEe-eccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhccccccee
Q 006368 188 --------TDLK-DPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCI 255 (648)
Q Consensus 188 --------~el~-~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~I 255 (648)
.++. .|+|++||++++.+ .++|||++++ ++++.+.++++++.. +|.+..+++.+|++ +++||||
T Consensus 433 ~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~---~P~~~~~~~~~~l~-~l~DW~I 508 (967)
T 1wz2_A 433 EKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKI---LPETRRAQFEAIID-WLDKKAC 508 (967)
T ss_dssp HHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCE---ESSTTHHHHHHHHH-SCCEECC
T ss_pred hCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEe---eCccccchHHHhhh-cccCeee
Confidence 0111 48899999999998 6999999998 599999999987654 35555678889996 6999999
Q ss_pred eeccCCCcccCCcC------CCCceeeeeecccchHHHh-----------------------------------ccccc-
Q 006368 256 TRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSI-----------------------------------TSCYT- 293 (648)
Q Consensus 256 sR~~~WGi~vP~~~------~~~~v~yVWfDa~~~yis~-----------------------------------~~~~~- 293 (648)
||++.||+|+|.+. ..+.++|||+++..+++.. ..+++
T Consensus 509 SRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~ 588 (967)
T 1wz2_A 509 ARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPA 588 (967)
T ss_dssp CBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCH
T ss_pred ccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccchhhcCCCH
Confidence 99999999999641 1256899999987766540 01122
Q ss_pred -------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhh
Q 006368 294 -------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366 (648)
Q Consensus 294 -------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~ 366 (648)
++|+.|| |.| +|++|+||++||..+|.++..++--..++|+++++||||+.+|+|||||+||+|+|.+
T Consensus 589 ~~~~~~~~~~~~w~--P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d 663 (967)
T 1wz2_A 589 EIIHEMKEEFEYWY--PLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFID 663 (967)
T ss_dssp HHHHHHHHHHHHHC--SCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHH
T ss_pred HHHhhhHHHHHhhC--CCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHH
Confidence 2456677 456 8999999999999998554444211123579999999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHH
Q 006368 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTK 446 (648)
Q Consensus 367 ~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~ 446 (648)
+++ .||+|++||||++.+++++|++|+++.+... .++++++.|+++++... . .|.. ......|+
T Consensus 664 ~i~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~---------~--~~~~--~~~~~~D~ 727 (967)
T 1wz2_A 664 AIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEY---------E--VKGN--VELKDIDR 727 (967)
T ss_dssp HHH-TTCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHSS---------C--CCCC--CCCCHHHH
T ss_pred HHH-HhChHHHHHHHHhCCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHhcC---------C--CCCc--ccCCHHHH
Confidence 999 7999999999997788999999999998876 56778888888776432 0 1111 12456789
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccch
Q 006368 447 TLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMP 525 (648)
Q Consensus 447 ~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P 525 (648)
++++.++.+++.+.++|++|+|+.|+..+ +.+++.+|+|++..++ .+. .++..++.++++.++.||+||||
T Consensus 728 ~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~-----~~~---~~~~~~l~~~l~~l~~LLaP~~P 799 (967)
T 1wz2_A 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYVLRTLADVWVRLMAPFTP 799 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-----hhH---HHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999876 5889999999998763 111 24556788899999999999999
Q ss_pred HHHHHHHHHhCC
Q 006368 526 SFSVEVNKQLNL 537 (648)
Q Consensus 526 ~~s~~i~~~L~~ 537 (648)
++|++||+.|+.
T Consensus 800 ~~aEeiw~~L~~ 811 (967)
T 1wz2_A 800 HICEELWEKLGG 811 (967)
T ss_dssp HHHHHHHHHSSC
T ss_pred hHHHHHHHhcCC
Confidence 999999999984
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-71 Score=648.13 Aligned_cols=452 Identities=19% Similarity=0.323 Sum_probs=368.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++||++++|||||.+||||+++ ++.+|+++||+||+||+|.|++|+|+||+||+.+|+++|++|.++++++.+.|
T Consensus 30 ~~~~k~~v~~~~Py~nG~lHiGHa~~-~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~ 108 (878)
T 2v0c_A 30 GGRGKQYVLVMFPYPSGDLHMGHLKN-YTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108 (878)
T ss_dssp C---EEEEEECCCCCSSCCBHHHHHH-HHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999 67799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 109 ~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~---------------- 172 (878)
T 2v0c_A 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVV---------------- 172 (878)
T ss_dssp HHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE----------------
T ss_pred HHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHh----------------
Confidence 999999999998 78899999999999999999999999999999999999999999998764
Q ss_pred cccccCCCCCccccCCCcCCC-CCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH------------------
Q 006368 177 QCENCGKLLNATDLKDPKCKV-CRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN------------------ 237 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~-~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------------------ 237 (648)
++.|++ ||++++.++++||||++++|+++|.+++++.+ ||.+
T Consensus 173 ---------------~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~----~p~~~~~~~~~wi~~s~g~~v~ 233 (878)
T 2v0c_A 173 ---------------EGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN----WPEKVKAMQRAWIGRSEGAEIL 233 (878)
T ss_dssp ---------------TTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB----SCHHHHHHHHHHHCEEEEEEEE
T ss_pred ---------------cCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC----CCHHHHHHHHHHhccccCceEE
Confidence 234677 89999999999999999999999887764321 1211
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 234 f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (878)
T 2v0c_A 234 FPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALN 313 (878)
T ss_dssp EEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEEC
T ss_pred EEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEEC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 314 P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~ 393 (878)
T 2v0c_A 314 PATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTE 393 (878)
T ss_dssp TTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCB
T ss_pred CCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcC
Confidence
Q ss_pred ---HHHHHHHHHhc----------ccccceeeeccCCCcccCCcCC----------------------------------
Q 006368 238 ---AIQATHAWLKE----------GLKVRCITRDLKWGVPVPLERF---------------------------------- 270 (648)
Q Consensus 238 ---~~~~~~~~l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------------- 270 (648)
++..+.++|.+ .|+|||||||+.||+|||.+.+
T Consensus 394 ~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl 473 (878)
T 2v0c_A 394 SEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPL 473 (878)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGG
T ss_pred HHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChh
Confidence 12223333332 3679999999999999996310
Q ss_pred --------------------CCceeeeeecccchHHHhc-cc-----c-chHHHhhcCCCCCcceEEEEeccccchh---
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSIT-SC-----Y-TNEWEQWWKNPENVELYQFMGKDNVPFH--- 320 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~-~~-----~-~~~~~~~w~~p~~~~~i~~~GkDi~~fH--- 320 (648)
+..|++||||+.+-|+... .. + .+.+..|| |.| +++.|+|+...|
T Consensus 474 ~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---~yi~G~d~~ilhl~y 548 (878)
T 2v0c_A 474 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM--PVD---QYIGGVEHAVLHLLY 548 (878)
T ss_dssp GGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHC--SBS---EEECCGGGTTTHHHH
T ss_pred hhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCC--CCe---EEEechHHHHHHHHH
Confidence 1257889999976555321 00 1 13466666 567 799999997554
Q ss_pred HhHHHHHhhhcCC-C-cccCceEEeeceeec-----------------------------------------------CC
Q 006368 321 TVMFPSTLLGTGE-N-WTLMKTISVTEYLNY-----------------------------------------------ES 351 (648)
Q Consensus 321 ~i~~pa~l~a~g~-~-~~~p~~~~~hg~l~~-----------------------------------------------~G 351 (648)
+-+|..+|...|+ . -.|++++++||++.- +|
T Consensus 549 ~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 628 (878)
T 2v0c_A 549 SRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDG 628 (878)
T ss_dssp HHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTS
T ss_pred HHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCC
Confidence 5568888887773 1 246699999999963 89
Q ss_pred -------ccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCC
Q 006368 352 -------GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424 (648)
Q Consensus 352 -------~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~ 424 (648)
+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+..+ ..+.+++.|++......+..
T Consensus 629 ~~~~~~~~KMSKSkGNvVdP~diI~-~yGADalRl~ll~~~~~~~D~~fs~~~v~~~--~~~l~Rl~n~~~~~~~~~~~- 704 (878)
T 2v0c_A 629 TLHLWKPAVMSKSKGNGVMVGPFVK-EQGADIARITILFAAPPENEMVWTEEGVQGA--WRFLNRIYRRVAEDREALLE- 704 (878)
T ss_dssp SEEEEEEEECSGGGTCCCBHHHHHH-HSCHHHHHHHHHHHSCTTSCEEECHHHHHHH--HHHHHHHHHHHHHHHHHHHT-
T ss_pred CchhhhHHHhhccCCCcccHHHHHH-HcCccHHHHHHhccCCCCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhcccc-
Confidence 899999999999999999 7999999999998789999999999999876 46777777777655443211
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHH
Q 006368 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSI 504 (648)
Q Consensus 425 ~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~ 504 (648)
.. ..++ .......|++++..+..+++.+.++|++|+|+.|+..+++|++.+|+|.+.. .. .
T Consensus 705 ---~~-~~~~---~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~--------~~-~--- 765 (878)
T 2v0c_A 705 ---TS-GVFQ---AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR--------PV-T--- 765 (878)
T ss_dssp ---CC-CCCC---GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--------CS-C---
T ss_pred ---cc-cccC---cccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc--------hh-H---
Confidence 00 0111 1124568999999999999999999999999999999999999999997541 11 1
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 505 VMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 505 vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
.++.++++.+..||+||||++|++||++||
T Consensus 766 --~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 766 --PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp --HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 356678999999999999999999999998
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-72 Score=646.15 Aligned_cols=461 Identities=17% Similarity=0.274 Sum_probs=349.0
Q ss_pred CCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHH
Q 006368 12 PPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89 (648)
Q Consensus 12 ~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e 89 (648)
...|.+. .++++|||++++|||||.+||||+++ ++.+|+++||+||+||+|++++|+|+||+||+.+|++.|++|.+
T Consensus 41 ~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~-~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~ 119 (880)
T 4arc_A 41 KRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRN-YTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119 (880)
T ss_dssp TTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHH-HHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHH
T ss_pred cCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHH-HHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHH
Confidence 3344443 35678999999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCc
Q 006368 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (648)
+++++.+.|++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|+++|++.+|
T Consensus 120 ~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev-------- 191 (880)
T 4arc_A 120 WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQV-------- 191 (880)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhh--------
Confidence 999999999999999999998 7899999999999999999999999999999999999999999997654
Q ss_pred cccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH--
Q 006368 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW-- 245 (648)
Q Consensus 168 c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (648)
++++|++||.+|+.+++++|||++++|+++|+++++..+ .||.+++.+..+|
T Consensus 192 -----------------------~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~---~wp~~v~~~~~~wig 245 (880)
T 4arc_A 192 -----------------------IDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD---HWPDTVKTMQRNWIG 245 (880)
T ss_dssp --------------------------------------CEEEEEECGGGGHHHHHHHGGGCT---TSCHHHHHHHHHHHC
T ss_pred -----------------------hcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcc---cccHHHHHHHHhhhc
Confidence 345678899999999999999999999999999876542 1333222222211
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 246 ~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 325 (880)
T 4arc_A 246 RSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 325 (880)
T ss_dssp EEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEE
T ss_pred cccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeecccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 326 g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~ 405 (880)
T 4arc_A 326 GFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG 405 (880)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSG
T ss_pred CcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCc
Confidence
Q ss_pred -----------------Hhc----------ccccceeeeccCCCcccCCcCC----------------------------
Q 006368 246 -----------------LKE----------GLKVRCITRDLKWGVPVPLERF---------------------------- 270 (648)
Q Consensus 246 -----------------l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------- 270 (648)
|++ .|+|||||||+.||.|+|.+.+
T Consensus 406 ~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~ 485 (880)
T 4arc_A 406 EFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITS 485 (880)
T ss_dssp GGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSC
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCC
Confidence 110 1679999999999999996421
Q ss_pred --------------------CCceeeeeecccchHHHhc-cc-----c-chHHHhhcCCCCCcceEEEEeccccchh---
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSIT-SC-----Y-TNEWEQWWKNPENVELYQFMGKDNVPFH--- 320 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~-~~-----~-~~~~~~~w~~p~~~~~i~~~GkDi~~fH--- 320 (648)
+..|+++|||+.+-|+..+ .. + .+.+..|+ |.| +++.|.|+...|
T Consensus 486 pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yigG~EHailHlly 560 (880)
T 4arc_A 486 PIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWL--PVD---IYIGGIEHAIMHLLY 560 (880)
T ss_dssp HHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHC--SEE---EEECCGGGTTTHHHH
T ss_pred chHhCccceeeccCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccC--Cce---EeecchhhHHHHHHH
Confidence 1257899999986555432 11 1 13455566 566 899999997666
Q ss_pred HhHHHHHhhhcCCC--cccCceEEeeceee--------cCCc------------------------------------cc
Q 006368 321 TVMFPSTLLGTGEN--WTLMKTISVTEYLN--------YESG------------------------------------KF 354 (648)
Q Consensus 321 ~i~~pa~l~a~g~~--~~~p~~~~~hg~l~--------~~G~------------------------------------KM 354 (648)
+-+|..+|..+|+- -.|++++++||+++ .+|+ ||
T Consensus 561 aRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKM 640 (880)
T 4arc_A 561 FRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKM 640 (880)
T ss_dssp HHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccc
Confidence 56788888877741 13569999999994 4566 99
Q ss_pred cccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCC
Q 006368 355 SKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434 (648)
Q Consensus 355 SKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p 434 (648)
|||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+..+ ..+.+++.|++.+....... . ..+
T Consensus 641 SKSkGNvVdP~diIe-kYGADalRl~ll~~~~~~~dl~~s~~~ie~a--~rfl~rlwn~~~~~~~~~~~------~-~~~ 710 (880)
T 4arc_A 641 SKSKNNGIDPQVMVE-RYGADTVRLFMMFASPADMTLEWQESGVEGA--NRFLKRVWKLVYEHTAKGDV------A-ALN 710 (880)
T ss_dssp CTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTCCC------C-CCC
T ss_pred cCcCCCCCCHHHHHH-HcCchHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcccc------c-ccc
Confidence 999999999999999 7999999999999878999999999999887 46788888888776542110 0 011
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHH
Q 006368 435 DANGAESHQLTKTLAEKVGKYVEQYLEAME-KVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLV 513 (648)
Q Consensus 435 ~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d-~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~l 513 (648)
.......|++++..++.+++++.++|+ +|+|+.|+..+++|++..|+|. +.+. . ...++.+++
T Consensus 711 ---~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---------~~~~-~---~~~~l~~~l 774 (880)
T 4arc_A 711 ---VDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---------TDGE-Q---DRALMQEAL 774 (880)
T ss_dssp ---STTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC---------CSSH-H---HHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh---------ccch-H---HHHHHHHHH
Confidence 112456789999999999999999997 8999999999999998887652 1111 1 234566788
Q ss_pred HHHHHHhhccchHHHHHHHHHhCCC
Q 006368 514 HLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 514 r~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
+.+..||+||||++|++||+.||..
T Consensus 775 ~~ll~LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 775 LAVVRMLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhccHHHHHHHHHHcCCC
Confidence 9999999999999999999999864
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=503.53 Aligned_cols=360 Identities=15% Similarity=0.106 Sum_probs=275.0
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
.+||+|++|+|.. ++.++|||+ |+|||.+||||+|+ +|.+|+++||+|+.||+|.|++|+||+|+||+.+|+++|.
T Consensus 7 t~t~~~~~f~p~~~~~v~~yv~g--Pt~y~~~HiGHar~-~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 7 TLTRQKEEFKPIHAGEVGMYVCG--ITVYDLCHIGHGRT-FVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp TTTTEEEECCCSSTTEEEEEECC--CBSSSCCBHHHHHH-HHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred CCCCCccccccCCCCCeeEEEcC--CcCCCCCcccccHH-HHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 4789999999974 455678776 45569999999998 6889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|+++++++.+.|++++++|||.+ |.|.||| +|...+++++++|.++|++|++ ++.+|||+++...
T Consensus 84 ~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~---------- 151 (461)
T 1li5_A 84 SFVAMVDRMIAEMHKDFDALNILRPDMEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT---------- 151 (461)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT----------
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCccccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccccc----------
Confidence 999999999999999999999998 8899998 4999999999999999999999 8999999886211
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQAT 242 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 242 (648)
+| +.||+.+ .++. +|+.++.. ..++++ ++..|...
T Consensus 152 ----------yg---~lsg~~~--~~l~------~g~rv~~~------------------~~k~~p~Df~lwk~~----- 187 (461)
T 1li5_A 152 ----------YG---VLSRQDL--DQLQ------AGARVDVV------------------DDKRNPMDFVLWKMS----- 187 (461)
T ss_dssp ----------TT---TTTTC------------------------------------------CCSTTCEEEEEEC-----
T ss_pred ----------cc---cccCCCH--HHhh------cCCcccch------------------hcccCccceEEEccC-----
Confidence 12 2344422 1221 12222110 011221 11112110
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
.+-.++++.+||+++|+| +++. ...+.+||..+.+ ||++|+|+++||++
T Consensus 188 --------~~g~~~w~s~WG~g~PgW----------hiec----------sam~~~~lg~~~d---ih~gG~Dl~fpH~~ 236 (461)
T 1li5_A 188 --------KEGEPSWPSPWGAGRPGW----------HIEC----------SAMNCKQLGNHFD---IHGGGSDLMFPHHE 236 (461)
T ss_dssp --------CTTSCCBCCTTCSEEECS----------SHHH----------HHHHHHHHCSSEE---EEECBGGGTTTHHH
T ss_pred --------CCCCCcccCCCCCcCCCc----------cchh----------HHHHHHHhCCCce---EEeccCccCchHHH
Confidence 011246678999999965 4321 1234567754333 89999999999999
Q ss_pred HHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 323 MFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 323 ~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
+|||+++++ |. ++|+.+++||||+++|+|||||+||+|+|.++++ .|++|++|||+++ .++.+|++||++.+.++
T Consensus 237 ~~~aq~~a~~g~--~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~-~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~ 312 (461)
T 1li5_A 237 NEIAQSTCAHDG--QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMS-GHYRSQLNYSEENLKQA 312 (461)
T ss_dssp HHHHHHHHHSSS--CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHT-TSCHHHHHHHHHS-SCTTSCEEECHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCcEEEEeeEEEECCeEccccCCCccChhHHhh-hCCHHHHHHHHHc-CCcCCCCCCCHHHHHHH
Confidence 999999886 64 4667777779999999999999999999999998 7999999999997 78899999999999886
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISS 480 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~ 480 (648)
.| ..+++.|++ ++ .++.++ . + .+..+.+.+.++| |+|+++.|+..|++|++
T Consensus 313 ~~--~l~rl~n~~-------~~-----~~~~~~----~-----d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~ 364 (461)
T 1li5_A 313 RA--ALERLYTAL-------RG-----TDKTVA----P-----A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAR 364 (461)
T ss_dssp HH--HHHHHHHHH-------TT-----CCTTSC----C-----C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHH-------HH-----hhcCCC----H-----H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 32 234444444 32 111111 0 1 2445677899999 99999999999999999
Q ss_pred HHHHHHHh
Q 006368 481 EGNAYLQE 488 (648)
Q Consensus 481 ~~N~yi~~ 488 (648)
.+|+|++.
T Consensus 365 ~~N~~~~~ 372 (461)
T 1li5_A 365 EVNRLKAE 372 (461)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999965
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=493.57 Aligned_cols=350 Identities=14% Similarity=0.117 Sum_probs=261.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
.++|+|++|+| .++.++|||+ |||||++||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 26 t~~~~~~~f~p-~~~v~~y~~g--Pt~yg~~HiGHar~-~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~ 101 (414)
T 3c8z_A 26 SADRQVRPVTP-GPTATMYVCG--ITPYDATHLGHAAT-YLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGID 101 (414)
T ss_dssp TTTTEEEECCC-CSEEEEEECC--CCTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCC
T ss_pred eccCCcccccC-CCCceEEeCC--CcCCCCcCccccHH-HHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCC
Confidence 46788999999 6666677664 67889999999998 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
|+++++++.+.|++++++|||+ +|.|.|||+ |...++++|++|.++|+||+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~---------------------- 157 (414)
T 3c8z_A 102 WRTLGDRETQLFREDMAALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDA---------------------- 157 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCC----------------------
Confidence 9999999999999999999999 999999985 889999999999999999987621
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (648)
++.++||++++|.+.+. ......+.+.++
T Consensus 158 ----------------------------------------~e~~~~f~~~~~~~~g~-----------l~~~~~~~~~~~ 186 (414)
T 3c8z_A 158 ----------------------------------------EYPDVYFRADATAQFGY-----------ESGYDRDTMLTL 186 (414)
T ss_dssp ----------------------------------------SCCCEEECTTSSTTTTT-----------TTCCCHHHHHHH
T ss_pred ----------------------------------------cCCCEEEEchhhhhhHh-----------hcCCCHHHHHHH
Confidence 12234445544432210 000001222333
Q ss_pred Hhccccc--ceee---ec-cCCCcccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEecc
Q 006368 246 LKEGLKV--RCIT---RD-LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKD 315 (648)
Q Consensus 246 l~~gl~d--~~Is---R~-~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkD 315 (648)
+.+...+ .+.+ +| ..||+++|++. .| ||++++- ..+|. ..+.+||..|.| +|++|+|
T Consensus 187 ~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~-------~W-da~~g~g--~pgWhiec~a~~~~~~g~~~d---i~~~G~D 253 (414)
T 3c8z_A 187 FAERGGDPDRPGKSDQLDALLWRAERPGEP-------SW-PSPFGRG--RPGWHVECSAIALTRIGTGLD---IQGGGSD 253 (414)
T ss_dssp HHHTTCCTTCTTCSSTTCEEEEEECCTTSC-------CB-CCTTCSE--EECHHHHHHHHHHHHTCSCEE---EEEEEGG
T ss_pred HhhccccccccccCCcchhhhcCCCCCCCC-------CC-CCCCCCC--CCCccchhHHHHHHhcCCCce---EEEeccc
Confidence 3211011 1112 22 34999999752 48 8887652 12342 346678855554 8999999
Q ss_pred ccchhHhHHHHHhhhc-CCCcccCceEEee-ceeecCCccccccCCcccChhhhhhcC-CCchhHHHHHhhcCCCCCCcc
Q 006368 316 NVPFHTVMFPSTLLGT-GENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTN-IPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 316 i~~fH~i~~pa~l~a~-g~~~~~p~~~~~h-g~l~~~G~KMSKS~gN~I~~~~~l~~~-~~~d~lR~~ll~~~~~~~d~~ 392 (648)
|++||+++||++++++ |. ++|.++++| |||+++|+|||||+||+|+|.++++ . |++|++||||++ +++.+|++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~--~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~-~g~g~D~lR~~ll~-~~~~~d~~ 329 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGE--RRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRA-QGVDPSAIRLGLFS-GHYREDRF 329 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCC--SCSEEEEEEECCBC-------------CBHHHHHH-TTCCHHHHHHHHHT-SCTTSCBC
T ss_pred cccHHHHHHHHHHHHhcCC--CCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhh-ccCCcchheeEEEe-cCcCCCCC
Confidence 9999999999999997 64 356778888 8999999999999999999999998 6 999999999998 88999999
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQG 471 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~a 471 (648)
||++.+.++.| ..++++|+++|+ ++ + . +..+.+++.++| |+|+++.|
T Consensus 330 fs~~~l~~~~~--~l~~l~n~~~~~------------~~--~-----~-----------~~~~~~~v~~a~~d~~~~~~A 377 (414)
T 3c8z_A 330 WSNEVLDEANA--RLARWRSATALP------------EA--P-----D-----------ATDVIARVRQYLADDLDTPKA 377 (414)
T ss_dssp CCHHHHHHHHH--HHHHHHHHHTSS------------CB--S-----C-----------CHHHHHHHHHHHHBTCCHHHH
T ss_pred cCHHHHHHHHH--HHHHHHHHHHhc------------cc--h-----h-----------HHHHHHHHHHHHHhcCCHHHH
Confidence 99999998754 367888876543 11 1 0 134567888999 89999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 472 LKTAMSISSEGNA 484 (648)
Q Consensus 472 l~~i~~l~~~~N~ 484 (648)
+..|+++++.+|+
T Consensus 378 l~~i~~~~~~~n~ 390 (414)
T 3c8z_A 378 LAALDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=488.51 Aligned_cols=371 Identities=17% Similarity=0.180 Sum_probs=251.2
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCC----------cccchHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGT----------DEYGTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~----------D~~G~ki 76 (648)
.+||+|++|+|.. +.++|||+ |||||.+||||||+ +|.+|+++||+|++||+|.|++|+ |+||+||
T Consensus 29 tltr~ke~f~p~~-~v~~Yvcg--PTvYg~~HIGHar~-~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI 104 (501)
T 3sp1_A 29 TRTKDFSELTNFE-NVKVYACG--PTVYNYAHIGNFRT-YIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKV 104 (501)
T ss_dssp TTTTEEEEECCCS-CEEEEECC--CBCSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------
T ss_pred CCCCccccccccC-cceEEeCC--CcCCCCcchhhhHH-HHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHH
Confidence 4789999999987 66677655 77889999999998 788999999999999999999765 5559999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|+++++++.+.|++++++|||++|.|.+ +.++|...++++|++|+++|+||++++++|||+++-..
T Consensus 105 ~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~~--- 180 (501)
T 3sp1_A 105 AKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKS--- 180 (501)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCTT---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccCC---
Confidence 99999999999999999999999999999999998875 46899999999999999999999999999999987321
Q ss_pred ccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWS 235 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 235 (648)
+|.. +|+.+. +++ .+|..++... .++++ ++..|.
T Consensus 181 -----------------yG~l---s~~~~~-~~~------~~g~r~~~~~------------------~K~~p~Df~lWk 215 (501)
T 3sp1_A 181 -----------------YGEM---AGIDLI-DKD------MTLPRVDVDK------------------FKRNKTDFVLWF 215 (501)
T ss_dssp -----------------TTTT---TC------------------------------------------CCSSTTCEEEEE
T ss_pred -----------------cccc---CCCChh-hhh------ccCCccCccc------------------ccCCchhhHhcC
Confidence 2221 111110 011 1122221100 01111 111121
Q ss_pred hH-HHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEec
Q 006368 236 QN-AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314 (648)
Q Consensus 236 ~~-~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~Gk 314 (648)
+. .. ..+. ++.+.+||...|+|- .+++....+||+.+.| ||++|+
T Consensus 216 ~~p~~-------~~~~----~~W~spwG~GrPGWh--------------------iEcsam~~~~lg~~~D---IH~gG~ 261 (501)
T 3sp1_A 216 TNSKF-------KDQE----MKWDSPWGFGYPSWH--------------------LECAAMNLEYFKDALD---IHLGGV 261 (501)
T ss_dssp ECCC----------------CCBCCTTCSEEECHH--------------------HHHHHHHHHHTTTCCC---EEEEEG
T ss_pred CCCCC-------CCCC----ceecCCCCCCCCCch--------------------HHHHHHHHHHcCCCce---EEeecc
Confidence 10 00 0112 223567888888762 1334456788976666 899999
Q ss_pred cccchhHhHHHHHhhhcCCCcccCceEEee-ceeecCCccccccCCcccChhhhhhcC-CCchhHHHHHhhcCCCCCCcc
Q 006368 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTN-IPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 315 Di~~fH~i~~pa~l~a~g~~~~~p~~~~~h-g~l~~~G~KMSKS~gN~I~~~~~l~~~-~~~d~lR~~ll~~~~~~~d~~ 392 (648)
|++|||+.+|+|+.+++... ++.++++| |||+++|+|||||+||||+|.++++ . |++|++||||++. ++.+|++
T Consensus 262 DLifpHheneiAqs~a~~g~--~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~-~gyg~d~lR~~lls~-~yr~~l~ 337 (501)
T 3sp1_A 262 DHIGVHHINEIAIAECFLNK--KWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLED-QNFSPLDFRYLCLTS-HYRNQLK 337 (501)
T ss_dssp GGTTTHHHHHHHHHHHHHTS--CCCSEEEEECCEECC----------CCCHHHHHH-TTCCHHHHHHHHHTS-CTTSCEE
T ss_pred ccccchHHHHHHHHHHccCC--CCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHh-cCCCHHHHHHHHHhc-cCCCCCc
Confidence 99999999999999987543 45666666 9999999999999999999999998 6 9999999999985 8889999
Q ss_pred ccHHHHHHHhhH--HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006368 393 FTWADLQAKSNN--ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLK 469 (648)
Q Consensus 393 fs~~~~~~~~n~--~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~ 469 (648)
||++.+.++.+. +|.++|.|+++|+........ ...+. . .. ...+..+.+.+.+|| |+|+++
T Consensus 338 fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~--~~~~~---~--~~--------~~~~~~~~~~f~~am~dDlnt~ 402 (501)
T 3sp1_A 338 FSLDNLQASKIARENLINKLSYFYESLDPVDLNTL--NKDLK---N--FG--------FSVEKEYYDSFVEKISFDLNVA 402 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH--HSCTT---S--CS--------SHHHHHHHHHHHHHHHBTSCHH
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccc--ccccc---c--hh--------hhhHHHHHHHHHHHHHhccCcH
Confidence 999999998776 778999999887643322100 00000 0 00 112345667899999 799999
Q ss_pred HHHHHHHHHHHHHH
Q 006368 470 QGLKTAMSISSEGN 483 (648)
Q Consensus 470 ~al~~i~~l~~~~N 483 (648)
.|+..|+++++.+|
T Consensus 403 ~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 403 QGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=459.56 Aligned_cols=361 Identities=17% Similarity=0.169 Sum_probs=265.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
.+||+|++|.|..++ ++-+..+.|||||.+||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 10 tlt~~ke~f~p~~~~-~v~~YvcGPtvy~~~HIGHaR~-~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~ 87 (462)
T 3tqo_A 10 SLTKQKEIFKPIESG-KVKLYVCGMTVYDYMHIGHGRS-WIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKES 87 (462)
T ss_dssp TTTTEEEECCCSSTT-EEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSC
T ss_pred cCCCceeccccCCCC-eEEEEeCCCcCCCCCchhhhHH-HHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCC
Confidence 478999999997543 3344445679999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCccccccc-CCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDISFDNFG-RTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~~D~f~-rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
|+++++++.+.|.+++++|||++|.+. |+| +|...++++|++|+++|++|++ .+.+|||+++...+..
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~-------- 157 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGK-------- 157 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTT--------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccccccc--------
Confidence 999999999999999999999997654 766 8999999999999999999999 6899999987543321
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (648)
. +++ +..++.. |..+.... .+.++ ++.-|...
T Consensus 158 ------------L---s~~--~~~~~~~------g~r~~~~~------------------~K~~p~DF~LWK~~------ 190 (462)
T 3tqo_A 158 ------------L---SHR--HLDELQA------GARVEVSD------------------SKRDPLDFVLWKKA------ 190 (462)
T ss_dssp ------------T---TTC--SCC------------------------------------CCSSTTCEEEEEEC------
T ss_pred ------------c---cCC--ChHHhhc------cCcccccc------------------ccCCccccceeeec------
Confidence 0 000 0011110 11111000 01111 11112210
Q ss_pred HHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
+.|.+-| +.+||...|+|. .+++....++...+.| ||..|.|++|||+..
T Consensus 191 ---k~~ep~W----~spwG~GrPGWH--------------------iEcsam~~~~lG~~~d---ih~gG~Dl~FpHhen 240 (462)
T 3tqo_A 191 ---KPGEPKW----DSPWGEGRPGWH--------------------IECSAMSSSILGQPFD---IHGGGLDLKFPHHEN 240 (462)
T ss_dssp ---CTTSCCB----CCTTCSEEECHH--------------------HHHHHHHHHHHCSSEE---EEEEEGGGTTTHHHH
T ss_pred ---CCCCCcc----cCCCCCCCCCCc--------------------eehHHHHHHhcCCCeE---EEccccccccHHHHh
Confidence 1233344 678999999883 1222233334432334 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
..|+..++.-. +++++++++|+|+++|+|||||+||+|+|.++++ .|++|++|||+++ .++.+|++||++.+.++
T Consensus 241 eiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~-~~g~dalR~~lls-~~yr~~l~fs~~~l~~a-- 315 (462)
T 3tqo_A 241 EIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK-ESDVEVLRYFLLS-GHYRNPLSYSKENLENG-- 315 (462)
T ss_dssp HHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHH-SCTTSCEEECHHHHHHH--
T ss_pred HHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh-hcChHHhhhhhcc-CCCCCCcCcCHHHHHHH--
Confidence 99988765322 3345555559999999999999999999999998 7999999999997 57789999999999887
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~ 482 (648)
....+++.|+++++ .. . .+ ..+..+.+.+.++| |+|+++.|+..|.++++.+
T Consensus 316 ~~~l~rl~~~~~~~----~~-----~---~~---------------~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~ 368 (462)
T 3tqo_A 316 RLALERFYLALRGL----PV-----V---NH---------------EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREI 368 (462)
T ss_dssp HHHHHHHHHHHTTC----CC-----------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hh-----c---cc---------------hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 34455555554321 10 0 00 01234567889999 7999999999999999999
Q ss_pred HHHHHh
Q 006368 483 NAYLQE 488 (648)
Q Consensus 483 N~yi~~ 488 (648)
|.+++.
T Consensus 369 n~~~~~ 374 (462)
T 3tqo_A 369 NRFRDN 374 (462)
T ss_dssp HHHHHT
T ss_pred hhhhcc
Confidence 998765
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=395.98 Aligned_cols=373 Identities=13% Similarity=0.075 Sum_probs=265.5
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHH--------------------------
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT-------------------------- 76 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki-------------------------- 76 (648)
++.|+.+.|||||++||||+|+ +|.+|+++||+|..||+|.++.+++|.|..+
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~-~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRN-IALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHH-HHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHH-HHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 6899999999999999999999 5679999999999999999987776665321
Q ss_pred --HH------------------HHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCC
Q 006368 77 --ET------------------KAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136 (648)
Q Consensus 77 --~~------------------~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~ 136 (648)
.. ++.+.|.. +++++.+.+.|++++++|||++|.|.+||+..|...+++++++|.++|+
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCC
Confidence 11 12445554 9999999999999999999999999999988889999999999999999
Q ss_pred EEE---ceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeecc--cee
Q 006368 137 LIE---NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN--HLF 211 (648)
Q Consensus 137 iy~---~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~--~~f 211 (648)
+|. +.+.|+||..++.|..+. ++ |..++.+... .||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~-------------------------------~l--------~~~vi~ksdG~~~Y~ 302 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGL-------------------------------ED--------PFFVLLRSNGTATYY 302 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSC-------------------------------SC--------CEEEEECTTSCBCHH
T ss_pred cccCcccCcCCCEEEechhcCCCC-------------------------------CC--------CceEEEecCCceEEe
Confidence 993 355677776655543211 00 1112222221 222
Q ss_pred eechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccc
Q 006368 212 LDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSC 291 (648)
Q Consensus 212 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~ 291 (648)
++-.+|.-+....+++......|... .+.+.|. .||+++|..+ .+++||||.+...+|+...
T Consensus 303 ~~D~a~~~~Kl~l~~~~~~~~~~~~p----------~~r~~w~-----~~g~~~~~~~-~~~~iyV~g~~h~~~~~~~-- 364 (592)
T 1iq0_A 303 AKDIAFQFWKMGILEGLRFRPYENPY----------YPGLRTS-----APEGEAYTPK-AEETINVVDVRQSHPQALV-- 364 (592)
T ss_dssp HHHHHHHHHHTTSSCCCEEEECCCSS----------CTTCEEE-----EEEEEECCCC-CSEEEEEEESSSCCCHHHH--
T ss_pred cchHHHHHHHhhhhhhhhhhhhhcCc----------chhhccc-----ccCcccCCCC-CCEEEEEEeccHHHHHHHH--
Confidence 22111111100000000000001100 0122332 6899999732 6899999987655554321
Q ss_pred cchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc-CceEEeeceeecCCccccccCCcccChhhhhhc
Q 006368 292 YTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL-MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDT 370 (648)
Q Consensus 292 ~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~-p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~ 370 (648)
.+++.++|.+++. --.++.||||+++|+|||||+||+|++.|+++
T Consensus 365 ---------------------------------~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~- 410 (592)
T 1iq0_A 365 ---------------------------------RAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE- 410 (592)
T ss_dssp ---------------------------------HHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHH-
T ss_pred ---------------------------------HHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHH-
Confidence 2445556654210 12456779999999999999999999999998
Q ss_pred C-------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCC
Q 006368 371 N-------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPP 425 (648)
Q Consensus 371 ~-------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~ 425 (648)
. +++|++|||+++..+ .+|++|+++.+.+. +++..+++++.+.|+.++++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~-~~~~~Fd~d~~~~~-~~~~~~ylqya~aR~~sil~k-- 486 (592)
T 1iq0_A 411 EATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP-KKQIDFRYQEALSF-EGDTGPYVQYAHARAHSILRK-- 486 (592)
T ss_dssp HHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCT-TSCEEECHHHHHCS-SSSSHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCC-CCCCeecHHHHHHH-hccchHHHHHHHHHHHHHHHh--
Confidence 5 999999999998655 79999999999986 456888999999999999998
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh-----hhhcc
Q 006368 426 GQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF-----WKLYK 496 (648)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p-----w~l~k 496 (648)
+..+..+.. ....+.+.+|+..+..+.+.+.+++++++++.++..+++|++.+|+|++.++| |.+..
T Consensus 487 --~~~~~~~~~--~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~ 558 (592)
T 1iq0_A 487 --AGEWGAPDL--SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTA 558 (592)
T ss_dssp --HCCCCCCCG--GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTS
T ss_pred --hcccCCCcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCC
Confidence 222212211 11245678899999999999999999999999999999999999999999987 87764
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=393.61 Aligned_cols=376 Identities=15% Similarity=0.077 Sum_probs=275.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------------------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------------------------ 75 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------------------------ 75 (648)
.++++.|..+.|+|||++||||+|++ |.+|+++|++|..||+|.++.+++|+|..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~-iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~ 195 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNA-ILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRE 195 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHH-HHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcc
Confidence 45679999999999999999999995 66999999999999999999988887665
Q ss_pred ---------------HHHHHHHcC--------------------CCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHH
Q 006368 76 ---------------TETKAMEDN--------------------CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120 (648)
Q Consensus 76 ---------------i~~~A~~~g--------------------~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~ 120 (648)
+...|++.+ ..++++++.+.+.|++++++|||++|.|.++|+..|
T Consensus 196 ~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~ 275 (629)
T 2zue_A 196 RGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVR 275 (629)
T ss_dssp HTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHH
T ss_pred cccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCcccc
Confidence 333344333 344899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHCCCEE---EceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCC
Q 006368 121 TEACQAIFKKLLDNNWLI---ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKV 197 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy---~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~ 197 (648)
...+++++++|.++|++| ++++.|+||..++.|..+..+
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~-------------------------------------- 317 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN-------------------------------------- 317 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC--------------------------------------
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc--------------------------------------
Confidence 999999999999999999 466778888887766432100
Q ss_pred CCCCcEEeecc--ceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-CCCce
Q 006368 198 CRNAPQIRDTN--HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER-FKEKV 274 (648)
Q Consensus 198 ~g~~~~~~~~~--~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~-~~~~v 274 (648)
|..++.+.+. .||++-.+|..+....+ ++.+ + .++...+.++| ++||+++|+.. ..+++
T Consensus 318 -~~~v~~ksdG~~~Y~~~Diay~~~K~~ll--~~~f---r----------~~~~~~~~~~~--~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 318 -PILVLRRSDGTATYTGKDIAYHLWKFGKI--DVDL---L----------YKEWDSTTWTT--APDGKSMPNKFGNANIV 379 (629)
T ss_dssp -CEEEEECTTSCBCHHHHHHHHHHHHTTCS--CCCC---E----------EEECSSSCEEE--EEEEEECTTSSCCCSEE
T ss_pred -CceEEEecCCccccchhhHHHHHHHhhcc--cccc---c----------CCccccccccc--CCCCCCCCCccCCCCcE
Confidence 1122223222 23333222222100001 0110 0 00000123343 58999999521 25788
Q ss_pred eeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc--eEEeeceeecCCc
Q 006368 275 FYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK--TISVTEYLNYESG 352 (648)
Q Consensus 275 ~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~--~~~~hg~l~~~G~ 352 (648)
||||....-+|+.. ..+++.++|.++. ++ .++.||+|+++|+
T Consensus 380 IyV~g~~q~~~~~~-----------------------------------l~~~l~~lG~~~~-~~~~~h~~~g~V~~~~~ 423 (629)
T 2zue_A 380 INVIGAEQKHPQLA-----------------------------------IKYALQLLGFEDA-AANLYHLAYEHVERPEG 423 (629)
T ss_dssp EEEEEGGGHHHHHH-----------------------------------HHHHHHHTTCHHH-HHTEEEEEECCEEBTTB
T ss_pred EEEEeCcHhhHHHH-----------------------------------HHHHHHHcCCCCC-CCeEEEEEeeeEEcCCC
Confidence 88887644433321 2256677776420 22 4677899999999
Q ss_pred cccccCC--cccChhhhhhcC---------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 353 KFSKSKG--IGVFGNDAKDTN---------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 353 KMSKS~g--N~I~~~~~l~~~---------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
|||||+| |+|+++|+++ . +|+|++||++++..+ .+|++|+++.+.+. +
T Consensus 424 KMSkr~G~~n~v~l~dLl~-e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~-~~~~~Fd~d~~~~~-~ 500 (629)
T 2zue_A 424 KFSGRKGTWVGFTVDEVIQ-EAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSP-DKKIIFRWEDVLNF-E 500 (629)
T ss_dssp CCCTTTTTTTTCBHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCT-TSCEECCHHHHSCC-S
T ss_pred cccCCCCCCCeeeHHHHHH-HHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCC-CCCCeecHHHHHHH-h
Confidence 9999999 9999999998 5 999999999998654 79999999999885 5
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCC------CCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIV------PDA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~------p~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
++..++++|.+.|+.++++|... .+.. +.. .....++.+.+|+..+..+.+.+.+++++++++.++..++
T Consensus 501 ~~t~~ylqYa~aRi~Silrka~~---~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~ 577 (629)
T 2zue_A 501 GESAPYIQYAHARCSSILRKAEE---EGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFAN 577 (629)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH---TTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhhc---cccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67999999999999999987210 1110 000 0012346788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcc
Q 006368 477 SISSEGNAYLQESQFWKLYK 496 (648)
Q Consensus 477 ~l~~~~N~yi~~~~pw~l~k 496 (648)
+|++.+|+|++.+ |.+..
T Consensus 578 ~La~~fn~fy~~~--~vl~~ 595 (629)
T 2zue_A 578 ELASLFNKFYMDH--PVLKA 595 (629)
T ss_dssp HHHHHHHHHHHHC--CSTTS
T ss_pred HHHHHHHHHHHhc--cccCC
Confidence 9999999999987 45543
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=296.67 Aligned_cols=339 Identities=17% Similarity=0.156 Sum_probs=239.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHH-------HH--cCCC----
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA-------ME--DNCS---- 86 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A-------~~--~g~~---- 86 (648)
.++++.|....|+|+|++||||+|++ +.+|+++|++++.||+|.-...+.|.|..+-.-+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~-~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p 106 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGA-VFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYP 106 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHH-HHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHH-HHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 45689999999999999999999995 6699999999999999999999999999873221 11 1211
Q ss_pred ------------H---------------------HHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHH
Q 006368 87 ------------P---------------------KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133 (648)
Q Consensus 87 ------------~---------------------~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~ 133 (648)
. +.+++...+.+++++++|||.||.|...++ .|. .+.++++.|.+
T Consensus 107 ~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 107 EQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp SSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHHHHHH
Confidence 0 112233345789999999999998855432 334 89999999999
Q ss_pred CCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeee
Q 006368 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (648)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~ 213 (648)
+|++|++++..|...+. .|+ ..+.+++..+
T Consensus 185 ~g~~~e~dGa~~~~~~~-----------------------~g~----------------------~~~~vl~ksD----- 214 (464)
T 3fnr_A 185 HKGIYEQEGKIWLASSQ-----------------------KGD----------------------EKDRVIIRED----- 214 (464)
T ss_dssp TTCEEEETTEEEECGGG-----------------------GTC----------------------SSCEEEECTT-----
T ss_pred CCCEEEeCCeEEEEecc-----------------------cCC----------------------CCceEEEeCC-----
Confidence 99999988877753321 000 0001111100
Q ss_pred chhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccc
Q 006368 214 LPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT 293 (648)
Q Consensus 214 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~ 293 (648)
+ ...|.|....+.
T Consensus 215 ----------------------------------------------------------G---------~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 215 ----------------------------------------------------------G---------RGTYLAADIVYH 227 (464)
T ss_dssp ----------------------------------------------------------S---------CBCHHHHHHHHH
T ss_pred ----------------------------------------------------------C---------ceehhhHHHHHH
Confidence 0 011111100000
Q ss_pred -hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc-eEEeeceeec--CCc--cccccCCcccChhhh
Q 006368 294 -NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK-TISVTEYLNY--ESG--KFSKSKGIGVFGNDA 367 (648)
Q Consensus 294 -~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~-~~~~hg~l~~--~G~--KMSKS~gN~I~~~~~ 367 (648)
..+.. ..| ++|++.|.|+..+....+ +++.++|.+ +++ .+++||++++ +|+ |||||+||+|++.|+
T Consensus 228 ~~r~~~----~~d-~~Iyv~G~dq~~~f~~l~-~~l~~lG~~--~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dl 299 (464)
T 3fnr_A 228 KDKMSR----GYG-KCINIWGADHHGYIPRMK-AAMEFLGFD--SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDV 299 (464)
T ss_dssp HHHHTS----SCS-EEEEEEEGGGGGGHHHHH-HHHHTTTCC--GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHH
T ss_pred HHHHHc----CCC-eEEEEecCcHHHHHHHHH-HHHHHcCCC--ccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHH
Confidence 01111 112 468999999975444444 667778864 445 5677899865 775 999999999999999
Q ss_pred hhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCC-CCCCCCCCChHHHH
Q 006368 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI-VPDANGAESHQLTK 446 (648)
Q Consensus 368 l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~-~p~~~~~~~~~~d~ 446 (648)
++ .+|+|++|||+++. ...+|++|+++.+.+..|.+.+..+++.++|+.+++++... .+. .+........+.|+
T Consensus 300 l~-~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~---~~~~~~~~~~~~L~~~e~ 374 (464)
T 3fnr_A 300 VD-EIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK---KIDDVMKADLQSLNQDGV 374 (464)
T ss_dssp HH-HHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC---CTTTSTTCCCTTCCHHHH
T ss_pred Hh-hccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc---cCCCccccChhhCChHHH
Confidence 99 79999999999985 55799999999998876666666888899999999988321 111 11111112233389
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh
Q 006368 447 TLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (648)
Q Consensus 447 ~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (648)
+|+..+.++++.+.+++++++++.+++.+++|++.+|+|++.++-
T Consensus 375 ~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~v 419 (464)
T 3fnr_A 375 NLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKV 419 (464)
T ss_dssp HHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999998753
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=324.67 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=186.7
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccc--hHH---HHHHHHc--CCCH---------
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG--TAT---ETKAMED--NCSP--------- 87 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G--~ki---~~~A~~~--g~~~--------- 87 (648)
.||+.+.|||||.+||||+|+ +|.+|+++||++++|++|.|++++||+| .+| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~-al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRE-LFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHH-HHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCCcccCCcHH-HHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 577766799999999999998 6789999999999999999999999999 888 7777777 8888
Q ss_pred -HHHHHHHHHHHHHHHhhcCcccccccCCCchHHHH-HHHHHHHHHHHCC-CEEEce--Ee-----eeeccCcCcccccc
Q 006368 88 -KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTE-ACQAIFKKLLDNN-WLIENT--MQ-----QPYCDTCKRFLADR 157 (648)
Q Consensus 88 -~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~-~v~~~~~~L~~~G-~iy~~~--~~-----~~y~~~~~~~l~d~ 157 (648)
+++++++.+.|++++++|||++|.| |+|+. |.. .+++++++|.++| .||.-. +. ..||. + +++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~- 173 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPA- 173 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSE-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceec-
Confidence 8999999999999999999999998 77743 878 8999999999999 777321 11 24443 1 3321
Q ss_pred cccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH
Q 006368 158 LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237 (648)
Q Consensus 158 ~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 237 (648)
...|+.||+.....+ ......+.|++
T Consensus 174 -----------------~~~~~~~~~~~~~~~--------------~~~~~~~~f~~----------------------- 199 (523)
T 1irx_A 174 -----------------MVYCPEHRREAEIIE--------------WDGGWKVKYKC----------------------- 199 (523)
T ss_dssp -----------------EEECTTTCCEECEEE--------------ECSSSCEEECC-----------------------
T ss_pred -----------------cccchhhCCcccccc--------------cCCCCceeeee-----------------------
Confidence 112455555321100 00001122322
Q ss_pred HHHHHHHHHhcccccceeeeccCC-CcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccc
Q 006368 238 AIQATHAWLKEGLKVRCITRDLKW-GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 238 ~~~~~~~~l~~gl~d~~IsR~~~W-Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
+.|. ++.+..| |...|.|.. .|+-.+. +|. .+ ++++|+|+
T Consensus 200 ---------~~g~----~~~~d~~~G~g~~~w~~--------------------d~~~~~~-~l~--~~---vd~~G~Dh 240 (523)
T 1irx_A 200 ---------PEGH----EGWVDIRSGNVKLRWRV--------------------DWPMRWS-HFG--VD---FEPAGKDH 240 (523)
T ss_dssp ---------SSSC----CCEECTTSSCEEECHHH--------------------HHHHHHH-HSC--CC---BCCEEHHH
T ss_pred ---------cCCC----ccccCCcCCCCCCCCCc--------------------chHhhHH-HcC--CC---CcCCCcCc
Confidence 0111 1123345 554454310 0111111 121 22 67899999
Q ss_pred cchh----HhHHHHHhhhcCCCcccCceEEeeceeecC--CccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCC
Q 006368 317 VPFH----TVMFPSTLLGTGENWTLMKTISVTEYLNYE--SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (648)
Q Consensus 317 ~~fH----~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~--G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d 390 (648)
++|| ...++++ .++|.+ +| .+++|||++.+ |+|||||+||+|++.++++ .|++|++||||++ ..++++
T Consensus 241 ~~~h~s~~~~~~i~~-~alG~~--~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~-~~~pdalR~~l~~-~~~~~~ 314 (523)
T 1irx_A 241 LVAGSSYDTGKEIIK-EVYGKE--AP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRFIYAR-HRPNKE 314 (523)
T ss_dssp HSTTSHHHHHHHHHH-HHHCCC--CC-BCCEECCEEESCC---------CCCCHHHHHT-TSCHHHHHHHHHS-SCTTSC
T ss_pred cCCCcchhhHHHHHH-HHhCCC--CC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHH-HcCHHHHHHHHHh-cCCCCC
Confidence 9999 5667764 577753 55 67777999987 8999999999999999998 6999999999997 456799
Q ss_pred ccccHH-HHHHHh
Q 006368 391 TLFTWA-DLQAKS 402 (648)
Q Consensus 391 ~~fs~~-~~~~~~ 402 (648)
++||++ .+.+.+
T Consensus 315 ~~fs~~~~l~~~~ 327 (523)
T 1irx_A 315 IKIDLGLGILNLY 327 (523)
T ss_dssp EEECCSTTHHHHH
T ss_pred ceeCcchhHHHHH
Confidence 999999 777653
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=290.04 Aligned_cols=341 Identities=14% Similarity=0.157 Sum_probs=239.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------------------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------------------------ 75 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------------------------ 75 (648)
.++++.|..+.|+|||++||||+|+ +|.+|+++|+++..||+|.++.+++|+|+.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs-~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRS-TIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHH-HHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHH
Confidence 4567999999999999999999999 467999999999999999999999986554
Q ss_pred ------------------------HHHHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHH
Q 006368 76 ------------------------TETKAME------DNCS-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120 (648)
Q Consensus 76 ------------------------i~~~A~~------~g~~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~ 120 (648)
|+.+|++ .|.+ ++++++.+.+.|++++++|||.+|.|.++|+ .+
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~-~~ 298 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VS 298 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CC
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch-hh
Confidence 3445654 4654 5789999999999999999999999987774 23
Q ss_pred HHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCC
Q 006368 121 TEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~ 200 (648)
...+.++++.|.++|++|+.++..|+..+. | |+ -+ +.
T Consensus 299 ~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~--~---------------------g~-------~~-------------d~ 335 (607)
T 1f7u_A 299 KESMLKAIDLFKEKGLTHEDKGAVLIDLTK--F---------------------NK-------KL-------------GK 335 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGG--T---------------------CT-------TT-------------CE
T ss_pred hhHHHHHHHHHHhCCCEEEECCcEEEEecc--c---------------------CC-------CC-------------Cc
Confidence 378899999999999999988777764331 1 00 00 00
Q ss_pred CcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeec
Q 006368 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFD 280 (648)
Q Consensus 201 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfD 280 (648)
.++.+....+..... |
T Consensus 336 ~v~~KsDG~~~Y~t~---D------------------------------------------------------------- 351 (607)
T 1f7u_A 336 AIVQKSDGTTLYLTR---D------------------------------------------------------------- 351 (607)
T ss_dssp EEEECTTSCCCHHHH---H-------------------------------------------------------------
T ss_pred eeEeccCCCcCCCCC---c-------------------------------------------------------------
Confidence 011111111100000 0
Q ss_pred ccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCc
Q 006368 281 APIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGI 360 (648)
Q Consensus 281 a~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN 360 (648)
++|. . ..+..+ ..+ ++|++.|.|+...-...+ +++.++|.+ .+..+.+.+|..+. |||||+||
T Consensus 352 --ia~~----~--~k~~~~---~~d-~~IyV~g~~q~~~f~q~~-~~~~~lG~~--~~~~~~Hv~fg~v~--kMSkR~G~ 414 (607)
T 1f7u_A 352 --VGAA----M--DRYEKY---HFD-KMIYVIASQQDLHAAQFF-EILKQMGFE--WAKDLQHVNFGMVQ--GMSTRKGT 414 (607)
T ss_dssp --HHHH----H--HHHHHH---CCS-EEEEECCGGGHHHHHHHH-HHHHHTTCG--GGGGEEEECCCCEE--SCCGGGTC
T ss_pred --HHHH----H--HHHhhc---CCC-cEEEEEcChHhhHHHHHH-HHHHHcCCC--cCcEEEEecccccc--cccCCCCC
Confidence 0000 0 000000 011 235555555532212222 566777865 34555544775554 69999999
Q ss_pred ccChhhhhhcCCC----------c------------------hhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 361 GVFGNDAKDTNIP----------V------------------EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 361 ~I~~~~~l~~~~~----------~------------------d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
+|+++|+++ .+. + .++||++++ ....++++|+++.+.+. +++...++++
T Consensus 415 ~v~L~dLld-e~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~~-~g~t~pylqY 491 (607)
T 1f7u_A 415 VVFLDNILE-ETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLSF-EGDTGPYLQY 491 (607)
T ss_dssp CCBHHHHHH-HHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHCC-SSSSHHHHHH
T ss_pred cccHHHHHH-HHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHHH-hccchHHHHH
Confidence 999999998 442 2 479999998 56679999999999874 5677779999
Q ss_pred HHHHHHHhhhCCCCCCCCCC-CCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSI-VPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~-~p~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.+.|+.++++|..+ .... +.... ....++.+..|+..+..+.+.+.+++++++++.++..+.+|+..+|+|++.++
T Consensus 492 a~aRi~SIlrka~~--~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~ 569 (607)
T 1f7u_A 492 AHSRLRSVERNASG--ITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLW 569 (607)
T ss_dssp HHHHHHHHHHHTTT--SCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC--CCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998311 1100 00001 11225678899999999999999999999999999999999999999999885
Q ss_pred h
Q 006368 491 F 491 (648)
Q Consensus 491 p 491 (648)
-
T Consensus 570 V 570 (607)
T 1f7u_A 570 V 570 (607)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=178.27 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=77.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+|||||+++ +..+.++| +|.+.|+..+||.+.+ + . ...+.+.|.+++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRta-l~n~l~Ar-----~~~G~~iLRieDtD~~---R---~-------~~e~~~~I~edL~w 157 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAA-ILNHEYAR-----KYDGRLILRIEDTDPR---R---V-------DPEAYDMIPADLEW 157 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCGG---G---C-------CTTHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECcCCcc---c---c-------cHHHHHHHHHHHHH
Confidence 556677899999999999984 54555554 6889999999999875 1 1 33567788999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++.| +|.....++.++|+++|++|.
T Consensus 158 LGl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 158 LGVEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HTCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 999999776666 788999999999999999995
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=156.96 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+||||||++ |..+.++| +|...|+..+||.+.. .....+.+.+.+++++
T Consensus 27 v~tRFaPSPtG~LHIGhaRta-l~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSI-CLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEW 87 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHH
Confidence 455566899999999999984 55666666 5788999999999863 1244667889999999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| ..++.| +|.....++..+|+++|++|.
T Consensus 88 LGl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 999996 445555 667777788889999999995
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=156.80 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=76.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+||||||++ |....++| +|...|+..+||.+.+ + . ...+.+.|.+++++
T Consensus 67 v~tRFaPSPtG~LHIGhARtA-L~n~l~Ar-----~~gG~fiLRIEDTD~~---R------~----~~e~~~~IledL~w 127 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFAS-LLDFNTAR-----QYGGQFNLRMDDTNPE---L------A----RQEYVDSIADDLKW 127 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCTT---T------C----CHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECcCCcc---c------c----cHHHHHHHHHHHHH
Confidence 566567899999999999984 55555555 5788999999999875 1 1 34667889999999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| ..++.| +|....+++.++|+++|++|.
T Consensus 128 LGl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 999996 455556 788899999999999999995
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=148.41 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|+|||.+||||+|++ |.. |+..+++...|+..+||.+.. .. ...+.+.+.+++++|||.
T Consensus 6 FAPSPtG~lHiG~arta-l~n-----~l~Ar~~~G~filRieDtD~~---------R~----~~~~~~~i~~dL~wLGl~ 66 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTA-VFN-----WLYARHRGGKFILRIEDTDRE---------RS----RPEYTENILEGLQWLGLT 66 (492)
T ss_dssp ECCCTTSCCBHHHHHHH-HHH-----HHHHHHTTCEEEEEECCCSSS---------SC----CHHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCCccHHHHHHH-HHH-----HHHHHhcCCeEEEEEeeCCcc---------cc----chHHHHHHHHHHHHcCCC
Confidence 35799999999999984 544 454556788899999998751 11 245667889999999999
Q ss_pred ccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|. .++.| ++....+++.++|.++|++|.
T Consensus 67 wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 67 WDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 985 44555 677788899999999999995
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=134.57 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
.|+++--.|.|+|.+||||+|++ +..|.++|. ..|.-++- ++|.+. ......+...+.+.+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtA-l~n~~~Ar~--~~G~~iLR---ieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTA-LFNFLFARK--EKGKFILR---IEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHH-HHHHHHHHH--HTCEEEEC---BCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHH-HHHHHHHHH--cCCeEEEE---EecCCc-------------cccHHHHHHHHHHHH
Confidence 46777778899999999999995 669999998 45754444 555552 112234456678889
Q ss_pred hhcCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 103 KWFDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 103 ~~l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
++||+.+|.. ++.| ++....+++.++|.++|.+|.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS--~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQS--ERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCCCcccCCCCCceeee--ccHHHHHHHHHHHHHCCCeeE
Confidence 9999999853 2333 677888889999999999873
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=131.17 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.+=-| |.|+|.+||||+|++ +..+.++|. |.-.|+.-++|.+.. .-...+.+.+.+++
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artA-l~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL 188 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTA-LFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESL 188 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHH-HHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHH-HHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHH
Confidence 4445456 899999999999995 669999985 333455666665421 12345567789999
Q ss_pred hhcCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 103 KWFDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 103 ~~l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
++|||.+|.- ++.| ++....+++.++|.++|++|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred HHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 9999999962 3444 455788899999999999995
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=124.62 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=73.8
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|==.|+|||.+||||+|++ | .+|+..+++.+.|+..+||.+.+ ++ ...+.+.+.+++++|
T Consensus 7 ~~RFAPsPtG~LHiG~~rta-l-----~n~l~Ar~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~L 67 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAA-L-----GSYLQARARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHY 67 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHH-H-----HHHHHHHHTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHT
T ss_pred EEEECcCCCCCccHHHHHHH-H-----HHHHHHHhcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHc
Confidence 44445799999999999984 4 56666667889999999998865 11 145677899999999
Q ss_pred Cccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||.+|. .++.| ++....+++.++|.++|++|.
T Consensus 68 Gl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 68 GLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 999995 44555 567889999999999999995
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=123.70 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=70.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||+|++ |....++|- +...|+.-+||.+.+ .-...+.+.+.+++++
T Consensus 26 v~~RFAPsPtG~LHiG~~rta-l~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~w 86 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTA-LFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRW 86 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHH-HHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHH-HHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHH
Confidence 344455799999999999985 557777664 456777888887654 1133456778999999
Q ss_pred cCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.- ++.| ++....++..++|.++|.+|.
T Consensus 87 lGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 87 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 99999962 3444 556788999999999999995
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=125.95 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=68.2
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|||.+||||+|++ +....++|- +.-.|+.-+||.+.+ .-...+.+.+.+++++||+.
T Consensus 6 FaPsPtG~LHiG~~rta-l~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dl~wlGl~ 66 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIA-LFNYAWARR-----NGGRFIVRIEDTDRA-------------RYVPGAEERILAALKWLGLS 66 (468)
T ss_dssp ECCCCSSSCBHHHHHHH-HHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTCC
T ss_pred eCCCCCCCccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCc-------------ccChHHHHHHHHHHHHcCCC
Confidence 35789999999999985 557777773 445688888888654 11234456788999999999
Q ss_pred cccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|.- ++.| ++....+++.++|.++|.+|.
T Consensus 67 wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 67 YDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp CSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEE
Confidence 9863 3444 667888899999999999984
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=124.75 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=71.4
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
|==.|.|+|.+||||+|+ .|..+.++|. +...|+..+||.+.+ .....+.+.+.+++++||
T Consensus 28 ~RFAPSPTG~lHiG~~rt-al~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlG 88 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRS-ALYPWAFARK-----MKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLG 88 (490)
T ss_dssp EEECCCCCSCCBHHHHHH-HHHHHHHHHH-----TTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCCccHHHHHH-HHHHHHHHHh-----cCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcC
Confidence 333479999999999998 4667777773 567888888887752 112466788999999999
Q ss_pred ccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 107 ISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 107 i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|.+|. .++.| +|....+++.++|.++|++|.
T Consensus 89 l~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 89 LDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp CCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 99985 24445 677888999999999999984
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.7e-09 Score=112.50 Aligned_cols=91 Identities=19% Similarity=0.326 Sum_probs=66.5
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==.|.|+|.+||||+|++ |....++|- ..| .|+.=++|.+.. .....+.+.+.+++++||+
T Consensus 10 RFAPsPTG~LHiG~~rtA-L~n~l~Ar~--~gG---~fiLRieDtD~~-------------R~~~~~~~~I~~~L~wlGl 70 (498)
T 2ja2_A 10 RFCPSPTGTPHVGLVRTA-LFNWAYARH--TGG---TFVFRIEDTDAQ-------------RDSEESYLALLDALRWLGL 70 (498)
T ss_dssp EECCCSSSSCBHHHHHHH-HHHHHHHHH--HTC---EEEECBCCCCTT-------------TCCHHHHHHHHHHHHHHTC
T ss_pred EECcCCCCCccHHHHHHH-HHHHHHHHH--cCC---EEEEEECcCCCc-------------ccChHHHHHHHHHHHHcCC
Confidence 334789999999999995 668888883 234 555556665432 2223456678899999999
Q ss_pred cccc---------ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFDN---------FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D~---------f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+|. .++.| ++...-++..++|.++|.+|.
T Consensus 71 ~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 71 DWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEE
Confidence 9986 33444 567788889999999999984
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-07 Score=99.63 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=64.9
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==.|.|||.+||||||++ +....+||- . .=.|+.=+||.+.. .. ...+.+.+.+++++||+
T Consensus 28 RFAPsPtG~LHiG~artA-l~n~~~Ar~---~--~G~fiLRieDtD~~---------R~----~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 28 RYAPSPTGLQHIGGIRTA-LFNYFFAKS---C--GGKFLLRIEDTDQS---------RY----SPEAENDLYSSLKWLGI 88 (512)
T ss_dssp EECCCSSSCCBHHHHHHH-HHHHHHHHH---T--TCEEEECBCCCCTT---------SC----CHHHHHHHHHHHHHHTC
T ss_pred EeCcCCCCcccHHHHHHH-HHHHHHHHH---c--CCEEEEEeCcCCCC---------cC----CHHHHHHHHHHHHHcCC
Confidence 335789999999999986 558888773 2 33567777777642 11 12455678899999999
Q ss_pred ccccccC-------CCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFDNFGR-------TSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D~f~r-------T~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+|-=.. ....++...-++..++|.++|.+|.
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 9984111 1122556777788899999999984
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-05 Score=79.04 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=45.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhc
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN 384 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~ 384 (648)
+.++|.|+...+ ..=--+....|. +. ...+++.++ .++|+|||||.||.|++.| +++.+|-.+++.
T Consensus 173 ~v~~G~DQ~~~~-~l~rdla~~~~~--~~-p~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 173 LAVGGIDQRKIH-MLARENLPRLGY--SS-PVCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEEEGGGHHHH-HHHHHHGGGGTC--CC-CEEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEEechhhHHHH-HHHHHHHHhcCC--CC-ceEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 678999997633 222222233343 22 345666777 4899999999999998875 378999999873
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.74 E-value=9e-05 Score=77.00 Aligned_cols=69 Identities=17% Similarity=-0.003 Sum_probs=44.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee-ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT-EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h-g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+...... +-+.+-...|.-++.|..++.| ..|. ++|.|||||.+|.|++.| +++.++=.+.+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 229 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILR 229 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHT
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHh
Confidence 78899999764422 2222222223223456666654 4553 889999999999998875 46777777765
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=75.20 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=31.7
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cC-CccccccCCcc-cChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YE-SGKFSKSKGIG-VFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~-G~KMSKS~gN~-I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+..... .---+....|. ..| ..+++.+|. ++ |+|||||.+|. |++.|- ++.+|=-+.+
T Consensus 185 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~------p~~i~kKI~k 252 (394)
T 2dlc_X 185 CQFGGVDQRKIFV-LAEENLPSLGY--KKR-AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE------PKQVKKKINS 252 (394)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCC-EEEEECCCCCCC----------CCSCBTTCC------HHHHHHHHHH
T ss_pred EEecCccHHHHHH-HHHHHHHHcCC--CCC-EEEecccccCCCCCCcCCCCCCCCEEeccCC------HHHHHHHHHH
Confidence 6778999975432 22223344443 333 444456664 78 99999999996 887642 4566666654
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0005 Score=70.66 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.|.+++ -|+|.+|||| ..++ -.+ ++++..|++++++.| |.|+.-. . ..++ +-+.++...+..++
T Consensus 28 ~~~vy~G~-~PTg~lHlGh-l~~l---~~~-~~lQ~~g~~~~~~i~-D~~a~~~----~--~~~~-e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 28 EKSAYIGF-EPSGKIHLGH-YLQI---KKM-IDLQNAGFDIIILLA-DLAAYLN----Q--KGEL-DEIRKIGDYNKKVF 93 (314)
T ss_dssp SEEEEEEE-CCCSSCBHHH-HHHH---HHH-HHHHHTTEEEEEEEC-HHHHHHT----T--CCCH-HHHHHHHHHHHHHH
T ss_pred CCEEEEcc-CCCCCcchhh-HHHH---HHH-HHHHHCCCCEEEEEe-cceEecC----C--CCCH-HHHHHHHHHHHHHH
Confidence 44554544 4568999999 6543 334 444456999888776 2222110 0 1133 34455557778888
Q ss_pred hhcCccccccc
Q 006368 103 KWFDISFDNFG 113 (648)
Q Consensus 103 ~~l~i~~D~f~ 113 (648)
.++|+. ..|+
T Consensus 94 ~a~G~d-~~~~ 103 (314)
T 2zp1_A 94 EAMGLK-AKYV 103 (314)
T ss_dssp HHTTCC-CEEE
T ss_pred HhcCCC-eEEE
Confidence 888876 4443
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00066 Score=71.20 Aligned_cols=74 Identities=8% Similarity=-0.115 Sum_probs=43.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.|.+++ -|+|.+|||| ..++ -.+++ ++..|++++++.| |.|+.-. ...|.++.+ +.++...+..++.+
T Consensus 37 ~iy~G~-~PTg~lHlG~-l~~l---~~~~~-lQ~~G~~~~~~ia-D~~a~~~----~ps~~~~e~-i~~~~~~~~~~~la 104 (364)
T 2cya_A 37 KGYIGY-EPSGVAHIGW-LVWM---YKVKD-LVEAGVDFSVLEA-TWHAYIN----DKLGGDMDL-IRAAARIVRRVMEA 104 (364)
T ss_dssp EEEEEE-CCCSSCBTHH-HHHH---HHHHH-HHHTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred EEEecc-CCCCCccHhH-HHHH---HHHHH-HHHCCCCEEEEEe-CcchhhC----CCCCCCHHH-HHHHHHHHHHHHHH
Confidence 444443 4569999999 5532 33444 4456999988777 3333211 111234433 34445667778889
Q ss_pred cCcccc
Q 006368 105 FDISFD 110 (648)
Q Consensus 105 l~i~~D 110 (648)
+|+.++
T Consensus 105 ~G~dp~ 110 (364)
T 2cya_A 105 AGVPVE 110 (364)
T ss_dssp TTCCGG
T ss_pred hCCCcc
Confidence 998876
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00059 Score=70.66 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+ .+. -+.+++. |++++|..+ |.|..-. ..+|. -+.++......+|.++|+
T Consensus 11 sG~-~PTG~lHLGhy~g-~l~--~~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 11 SGV-QPSGELSIGNYLG-ALR--QWQQMQD--DYDCQYCVV-DLHAITV-------RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEE-CSSSCCBHHHHHH-TGG--GHHHHHH--HSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred eCc-CCCCcccHHHHHH-HHH--HHHHHHh--cCeEEEEEe-cceeEcC-------CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 443 5669999999887 342 2334443 688877655 5554321 23553 445555667778888999
Q ss_pred ccc---cccCCCchHHHH
Q 006368 108 SFD---NFGRTSTPQQTE 122 (648)
Q Consensus 108 ~~D---~f~rT~~~~~~~ 122 (648)
+++ .|..+.-++|.+
T Consensus 76 Dp~k~~i~~qS~v~~~~e 93 (341)
T 3sz3_A 76 DPKKSTLFVQSHVPEHAQ 93 (341)
T ss_dssp CTTTSEEEEGGGCTHHHH
T ss_pred ChhhcEEEeccchhhhHH
Confidence 886 244444455543
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.016 Score=59.57 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=43.0
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--eceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll 382 (648)
+..+|.|+...+.. +-+-+-...|..++.|..++. +..|. ++|+|||||.+|.|++.| +++.++=.+.
T Consensus 142 ~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~ 215 (322)
T 3tzl_A 142 IVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQIS 215 (322)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHH
T ss_pred EEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHH
Confidence 78899999765422 112111111323346666653 45554 899999999999998764 3566776666
Q ss_pred h
Q 006368 383 T 383 (648)
Q Consensus 383 ~ 383 (648)
+
T Consensus 216 ~ 216 (322)
T 3tzl_A 216 S 216 (322)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.034 Score=59.03 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=43.7
Q ss_pred EEEEeccccchhHhHHHHHhhhc-CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+.... +. .+...+.+..|. .+|+|||||.||.|++.+- ..+++.++=++++
T Consensus 188 i~~gG~DQ~~ni~l-grdlarr~~~~---~~~~~lt~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWGNITA-GLELIRKTKGE---ARAFGLTIPLVTKADGTKFGKTESGTIWLDKE---KTSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHC-----CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcCC---CCeeecccccccCCCcccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 78899999654322 11111222 22 123444556664 8999999999999999873 4677888877775
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.041 Score=58.56 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=44.2
Q ss_pred EEEEeccccchhHhHHHHHhhhc-CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+.... +. .+...+.+..|. .+|+|||||.||.|++.+- ..+++.++=++++
T Consensus 189 i~~gG~DQ~~ni~~-grdla~r~~~~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWGNITS-GIELMRRMYGQ---TDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE---KTSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHCC---CCCEEEEECCCBCTTSCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcCC---CCeeEeecccccCCccccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 78899999654321 11112222 22 123444556664 8999999999999999873 4677888877775
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.025 Score=58.18 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=43.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+...... =--+....+. . +...+.+..|. .+|+|||||.+|.|++.| + +.+++.++=++.+
T Consensus 194 v~~gG~DQ~~~i~l-~rdla~r~n~--~-~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~-~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWGNITS-GIDLTRRLHQ--N-QVFGLTVPLITKADGTKFGKTEGGAVWLDP--K-KTSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHHHHHH-HHHHHHHHHC--C-CCEEEECCCCBCTTSCBTTEETTEECBSST--T-TSCHHHHHHHHHT
T ss_pred EEecCchhHHHHHH-HHHHHHHhCC--C-CceeeccCccCCCCcccccCCCCCeeeccC--C-CCCHHHHHHHHhC
Confidence 78899999654322 1111111221 1 22333445554 799999999999999987 3 5778888877775
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.045 Score=58.43 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=43.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc-cccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+ |...=--+....|. .|...+.+..|. .+|. |||||.||.|++.| +++.++=++++
T Consensus 190 l~~gG~DQ~~-ni~l~rdlarr~~~---~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQRF-NLLVGREVQRAYGQ---SPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTC---CCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHHH-HHHHHHHHHHHhCC---CCceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 7899999964 43222222233342 234555666664 8996 99999999999876 56778877775
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.034 Score=57.92 Aligned_cols=68 Identities=13% Similarity=-0.024 Sum_probs=33.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+...... =--+....+. .+...+.+..|. ++|+|||||.||.|++.|- .-+++.++=++++
T Consensus 213 i~p~G~DQ~~~i~l-~rdla~r~n~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 281 (356)
T 2pid_A 213 VQLGGSDQLGNIMS-GYEFINKLTG---EDVFGITVPLITSTTGAKLGKSAGNAVWLNRD---KTSPFELYQFFVR 281 (356)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHSS---CCCEEEEECCCC-------------CCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcccccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 78899999654321 1111222232 123344456664 8999999999999999873 4678888888886
|
| >1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.013 Score=49.91 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|+++.|||+|.
T Consensus 14 VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G 48 (109)
T 1gd7_A 14 VGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQ 48 (109)
T ss_dssp EEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEEC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCCCcEEEEEEC
Confidence 3456788999999999 999999987778999984
|
| >3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.0058 Score=52.87 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEeccccccC
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCFN 647 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~ 647 (648)
++++.++.+++++|+||+.+++|+|+ +.||+.|.+..++.
T Consensus 15 rVG~I~~~e~hp~AdKL~~~~VD~G~-~~~~iv~g~~~~y~ 54 (118)
T 3ers_X 15 RVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYS 54 (118)
T ss_dssp EEEEEEEEECCTTCSSCEEEEEECSS-SEEEEEECCTTTSC
T ss_pred EEEEEEEEEEcCCCCCcEEEEEEcCC-cEeeEEEEeehhcC
Confidence 34567788999999999999999976 67888888776653
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.049 Score=58.02 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=43.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+....+. .+...+.+-.|. .+|+|||||.|| .|++.+- ..+++.++=++++
T Consensus 190 i~~gG~DQ~~ni~l-grdlarr~~~---~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d~---~tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWGNIIA-GVRLVRQKLG---ATVHALTVPLVTAADGTKFGKSTGGGSLWLDPQ---MTSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHHHHHH-HHHHHHHHHC---CCCEEEECCCCBCTTSCBTTBCSSSCBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcCcCCCCCCCCeEEccCC---CCCHHHHHHHHhc
Confidence 78899999644321 1111111221 123444455664 899999999999 9999873 4678888877775
|
| >1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.023 Score=48.28 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
++.++++++++|+||+.+|+|+|+ +.|||+|+=
T Consensus 16 G~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~ 48 (107)
T 1mkh_A 16 GKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGL 48 (107)
T ss_dssp EEEEEEEECTTCSSCEEEEEECSS-CEEEEEECC
T ss_pred EEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCC
Confidence 456778999999999999999987 689999853
|
| >2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.023 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
.++.++.+++++|+||+.+|+|+|+ +.|||+|.=
T Consensus 19 VG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~ 52 (112)
T 2cwp_A 19 VGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGI 52 (112)
T ss_dssp EEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECC
T ss_pred EEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECC
Confidence 3456788999999999999999987 789999853
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.05 Score=56.56 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=42.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee-ceee-cCCc-cccccCCcccChhhhhhcCCCchhHHHHHh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT-EYLN-YESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h-g~l~-~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll 382 (648)
+..+|.|+...... +-..+-...|.-++.|..++.| ..|. ++|. |||||.+|.|++.|- ++.++=.+.
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~------p~~i~~Ki~ 238 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS------ADEVARKVM 238 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC------HHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC------HHHHHHHHH
Confidence 78899999764422 1122212234223456666653 4553 7997 999999998887642 566666666
Q ss_pred h
Q 006368 383 T 383 (648)
Q Consensus 383 ~ 383 (648)
+
T Consensus 239 ~ 239 (351)
T 1yi8_B 239 G 239 (351)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.051 Score=57.01 Aligned_cols=65 Identities=20% Similarity=0.057 Sum_probs=34.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+..... .---+....|. ..| ..+++.+|. ++|+|||||.+| .|++.| +++.++=.+.+
T Consensus 181 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p-~~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRKIFT-FAEKYLPALGY--SKR-VHLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCC-EEEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred EEEcChhHHHHHH-HHHHHHHHcCC--CCC-EEEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH
Confidence 6789999975432 22222333443 333 344456664 899999999999 687764 25667776665
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.039 Score=57.07 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.5
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee--ceee-cCC-ccccccCCcccChhhhhhcCCCchhHHHHH
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT--EYLN-YES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYL 381 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h--g~l~-~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR~~l 381 (648)
+..+|.|+...... +-+.+-...|.-++.|..++.. ..|. ++| +|||||.+|.|++.| +++.++=.+
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki 217 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKI 217 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHH
Confidence 78899999765432 1222211124223355554442 3554 899 999999999988865 256777777
Q ss_pred hh
Q 006368 382 LT 383 (648)
Q Consensus 382 l~ 383 (648)
.+
T Consensus 218 ~~ 219 (337)
T 2el7_A 218 QH 219 (337)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.13 Score=54.16 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHh-CCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRL-RGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~-~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.+++ -|+|.+||||..+ +- +.|++.. .|++++++.+ |.|..-. ..+.++.+ +.++......
T Consensus 72 ~p~~i~sG~-~PTG~lHLGh~v~----~~-~~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~-i~~~~~~~~~ 138 (392)
T 3jxe_A 72 RGFFLYTGR-GPSGPMHIGHIIP----FF-ATKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDD-TKRWAYDNIL 138 (392)
T ss_dssp CCCEEEEEE-CCSSCCBHHHHHH----HH-HHHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHH-HHHHHHHHHH
T ss_pred CCeEEEecc-CCCCchhHHHHHH----HH-HHHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHH-HHHHHHHHHH
Confidence 455666665 4559999999765 22 3444555 7999988887 5553211 11345544 4455556677
Q ss_pred HHhhcCcccc---cccCCCchHHHHHHHHH
Q 006368 101 VYKWFDISFD---NFGRTSTPQQTEACQAI 127 (648)
Q Consensus 101 ~~~~l~i~~D---~f~rT~~~~~~~~v~~~ 127 (648)
++.++|+.++ .|..+.-+.|...+..+
T Consensus 139 ~~lA~GlDp~kt~i~~qS~~~~~~~~~~~l 168 (392)
T 3jxe_A 139 DIIAVGFDPDKTFIFQNSEFTKIYEMAIPI 168 (392)
T ss_dssp HHHTTCCCTTSEEEEETTTSTHHHHHHHHH
T ss_pred HHHHhCcCccceEEEECchhHHHHHHHHHH
Confidence 7888899886 34445545555554443
|
| >1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.032 Score=47.72 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
+.++.++++++++|+||+.+|+|+|+ +.|||+|.=
T Consensus 18 rVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~ 52 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGI 52 (111)
T ss_dssp EEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECC
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECC
Confidence 34566788999999999999999987 789998853
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.029 Score=59.16 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=31.3
Q ss_pred eEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 340 TISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 340 ~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
..+.+..|. ++|+|||||.||.|++.+- .-+++.++=++++
T Consensus 279 ~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 320 (392)
T 1y42_X 279 VGFTVPLLTDSSGAKFGKSAGNAIWLDPY---QTSVFDFYGYFVR 320 (392)
T ss_dssp EEEECCCCBCTTCCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred cccccccCcCCchhhccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 444556664 8999999999999999873 3567777777775
|
| >2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.027 Score=48.30 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 17 VG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G 52 (113)
T 2nzh_A 17 TGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQ 52 (113)
T ss_dssp EEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEEC
T ss_pred EEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEEC
Confidence 4567788999999999 9999999875 68999984
|
| >2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.031 Score=48.17 Aligned_cols=34 Identities=0% Similarity=-0.011 Sum_probs=29.1
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 20 VG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G 55 (116)
T 2q2i_A 20 VGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQ 55 (116)
T ss_dssp EEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEES
T ss_pred EEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEEC
Confidence 4567788999999999 9999999865 68999884
|
| >3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4 | Back alignment and structure |
|---|
Probab=91.76 E-value=0.035 Score=47.51 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=29.4
Q ss_pred HHHHHhhhcccCCCC-ceeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENG-LCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~-l~~~~~~~~~~~~~q~~~~ 641 (648)
.++.++.+++++|+| |+..++|+|+++.|||+|.
T Consensus 17 VG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G 51 (112)
T 3g48_A 17 IGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQ 51 (112)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEEC
T ss_pred EEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeC
Confidence 345678889999999 9999999987788999985
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.16 Score=53.51 Aligned_cols=77 Identities=5% Similarity=-0.071 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.++. -|+ |.+||||... +..++++++..|..|.+..| ++- ....+...++. -+.++......
T Consensus 73 ~~~~vy~G~-~PTa~~lHlGh~v~----~~~~~~lQ~~~~~~v~i~I~-----D~~-~~~~r~~~~~e-~i~~~~~~~~~ 140 (393)
T 3hv0_A 73 ELFYLYTGR-GPSSESLHVGHLVP----FLFTKYLQDTFKVPLVIQLT-----DDE-KFIFKSNLTLE-ETHNYAYENMK 140 (393)
T ss_dssp CCCEEEEEE-CCSSSSCBSTTHHH----HHHHHHHHHHHCCCEEEEEC-----HHH-HHHHCTTCCHH-HHHHHHHHHHH
T ss_pred CCeEEEeCC-CCCCCCccHHHHHH----HHHHHHHHHhcCCCeEeecc-----ChH-HHhhccCCCHH-HHHHHHHHHHH
Confidence 356666766 566 7899999553 44556655555878777443 221 11122245644 44445555666
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++.++|++.+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 6667777654
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.23 Score=51.97 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=51.5
Q ss_pred CcEE----EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHH
Q 006368 22 RNIL----ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV 96 (648)
Q Consensus 22 ~~~~----it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~ 96 (648)
+++| |.+++ -|+|.+||||..+ .+ . .+.+++ |++|+|+.+ |.|..-. ..+|.++ .++..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvG-al-~----~~~~LQ~~~~~~~~Ia-D~hAlt~-------~~~~~~l-r~~~~ 93 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIG-AM-K----QFVELQHDYNSYFCIV-DQHAITV-------PQDRLEL-RKNIR 93 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHH-TH-H----HHHHTTTTSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHH
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHH-HH-H----HHHHHHccCcEEEEEe-cceeeec-------CCCHHHH-HHHHH
Confidence 4566 66666 6779999999887 34 1 222333 999977664 5554321 2355444 44455
Q ss_pred HHHHHHhhcCcccc---cccCCCchHHHHH
Q 006368 97 IHKDVYKWFDISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 97 ~~~~~~~~l~i~~D---~f~rT~~~~~~~~ 123 (648)
....+|.++|++++ .|..+.-++|.+.
T Consensus 94 ~~aa~~lA~GlDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 94 NLAALYLAVGLDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp HHHHHHHHTTCCTTTEEEEEGGGSTHHHHH
T ss_pred HHHHHHHHhCCChhHeEEEecccccchHHH
Confidence 67778888999986 3555555666543
|
| >1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X | Back alignment and structure |
|---|
Probab=91.43 E-value=0.08 Score=45.19 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecccccc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCF 646 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~ 646 (648)
.++.++.+++++|+||+..++|+|+ +.|||.|....++
T Consensus 16 VG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~ 53 (111)
T 1pxf_A 16 VGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYY 53 (111)
T ss_dssp EEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTS
T ss_pred EEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcc
Confidence 3456778999999999999999975 7899998645554
|
| >2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.043 Score=48.26 Aligned_cols=35 Identities=0% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 607 KTAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
+.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 34 rVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G 70 (131)
T 2q2h_A 34 RVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQ 70 (131)
T ss_dssp EEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEES
T ss_pred EEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEEC
Confidence 45678888999999999 9999999875 68999884
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.27 Score=51.42 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.|++ -|+|.+||||..+ .+ ..+++...|++|+|..+ |.|-.-. ......+....+......
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~-~~----~~~~lq~~~~~~~~~Ia-D~ha~t~------~~~~~~e~~r~~~~~~~~ 134 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLT-VD----QLIYLQKNGFKVFVAIA-DAEAFAV------RRIGREEAVRIAVEEYIA 134 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHH-HH----HHHHHHHTTCEEEEEEC-HHHHHHT------TCCCHHHHHHHHHHTTHH
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHH-HH----HHHHHHhCCCeEEEEEe-cchhhcc------CCCCCHHHHHHHHHHHHH
Confidence 4577888887 7789999999663 22 35556667999976654 5553211 122233444555556667
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++-++|+.++
T Consensus 135 ~~lA~GlDP~ 144 (372)
T 3a04_A 135 NMIALGLDPK 144 (372)
T ss_dssp HHHHHTCCTT
T ss_pred HHHHcCCChH
Confidence 7788899886
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.13 Score=54.07 Aligned_cols=77 Identities=8% Similarity=-0.036 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.+++ -|+| .+||||.. .+..++++++..|..+.++.|-+++ +.....++.+ +.++.....
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v----~~~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~~~e~-i~~~~~~~~ 142 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLI----PFMFTKWLQDSFRVPLVIQMTDDEK-------FYFRNIPMEQ-VEAMTTENI 142 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSH----HHHHHHHHHHHHTCCEEEEECHHHH-------HHHSCCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHH----HHHHHHHHHHhcCCcEEEEEcchHH-------HhcCCCCHHH-HHHHHHHHH
Confidence 3466777776 6778 79999964 3555666555558888777443331 1122255444 444555566
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
.++.++|+..+
T Consensus 143 ~~~lA~GlDp~ 153 (395)
T 3i05_A 143 KDIIAMGFDPE 153 (395)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 66666776554
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.39 Score=50.31 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++.|.+++ -|+|.+||||..+ +.+.+++++..|..+.++.+.+ + +.. ....++.++ .++......
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~----~~~~~~lQ~~~g~~v~i~I~D~-~--a~~----~r~~~~e~i-~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYIT----LEFARYLQDAFNIQVIIQILDD-I--KVL----NREATINEA-SKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHH----HHHHHHHHHHHCCEEEEEECHH-H--HHH----TTSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHH----HHHHHHHHHhcCCeEEEEeCch-H--Hhh----cCCCCHHHH-HHHHHHHHH
Confidence 3466777776 6779999999554 5555555555688888773322 1 111 112565544 444456667
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+-++|+..+
T Consensus 147 ~~lA~GlDp~ 156 (386)
T 3hzr_A 147 YILAFGFNED 156 (386)
T ss_dssp HHHHTCCCGG
T ss_pred HHHHcCCCCc
Confidence 7788888775
|
| >3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.099 Score=49.26 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 605 AAKTAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 605 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
..+.++.++++++++|+||+..|+|+| ++.|||+|.
T Consensus 92 ~vvVG~V~~~e~hP~ADkL~v~~VdvG-~~~~qIV~G 127 (199)
T 3bu2_A 92 KFVVGYVETKDKHPDADKLSVLSVDVA-TEKLQIVCG 127 (199)
T ss_dssp SEEEEEEEEEEECTTTSSCEEEEEECS-SCEEEEEEC
T ss_pred CeEEEEEEEEEECCCCCEEEEEEEEeC-CEEEEEEeC
Confidence 345678899999999999999999998 578999985
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.16 Score=52.60 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=45.3
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ -|+|.+||||..+. + --+.++ +. |+++++..+ |.|+.-. ..+|.++ ..+...+..++.++
T Consensus 7 i~sG~-~PTG~lHLGn~vg~-l--~~~~~l-Q~-~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~lA~ 71 (348)
T 2yy5_A 7 ALTGI-QASGKQHLGNYLGV-M--QSLIEL-QE-QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLLAV 71 (348)
T ss_dssp EEEEE-CCCTTCBHHHHHHT-G--GGHHHH-HH-HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHT
T ss_pred EEEee-CCCCcccHHHHHHH-H--HHHHHH-Hh-CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHHHh
Confidence 33444 45599999998874 3 112233 33 899877665 3232211 0344433 33445666778888
Q ss_pred Ccccc---cccCCCchHHHH
Q 006368 106 DISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~ 122 (648)
|+.++ .|..+.-+.|.+
T Consensus 72 Gldp~k~~if~qS~~~~~~e 91 (348)
T 2yy5_A 72 GLDPQKACLFLQSDLLEHSM 91 (348)
T ss_dssp TCCTTTEEEEEGGGCHHHHH
T ss_pred CCChhHeEEEECCcccchhH
Confidence 99886 344444455433
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=90.51 E-value=0.18 Score=51.81 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc-
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD- 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D- 110 (648)
-|+|.+||||..+. + --+.+. .. |++++++.| |.|+.-. . .++. -+.++...+..+|.++|+.++
T Consensus 9 ~PTG~lHlGn~vg~-l--~~~~~l-Q~-g~~~~~~Ia-D~ha~~~-~------~~~e-~i~~~~~~~~~~~la~Gldp~k 74 (328)
T 1i6k_A 9 QPSGVITIGNYIGA-L--RQFVEL-QH-EYNCYFCIV-DQHAITV-W------QDPH-ELRQNIRRLAALYLAVGIDPTQ 74 (328)
T ss_dssp CCCSCCBHHHHHHT-H--HHHHHH-TT-TSEEEEEEC-HHHHTTS-C------CCHH-HHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHH-Hc-CCcEEEEEe-CceeecC-C------CCHH-HHHHHHHHHHHHHHHhCCChhh
Confidence 34589999998873 3 122222 22 999877665 3333211 0 3444 344455577788889999886
Q ss_pred --cccCCCchHHHH
Q 006368 111 --NFGRTSTPQQTE 122 (648)
Q Consensus 111 --~f~rT~~~~~~~ 122 (648)
.|..+.-++|.+
T Consensus 75 ~~if~qS~~~~~~~ 88 (328)
T 1i6k_A 75 ATLFIQSEVPAHAQ 88 (328)
T ss_dssp EEEEEGGGCTHHHH
T ss_pred cEEEecCchhhhhH
Confidence 344444444443
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=90.44 E-value=0.23 Score=52.84 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
++++.|.+++ -|+ |.+||||... . -..+++++..|+.++++.|-.+ +. +-. ..++.+ +.++...+.
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~-~---~~~~~lQ~~~G~~~iilIgD~t-a~--igd----~lt~e~-i~~n~~~~~ 172 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIP-F---IFTKWLQDVFNVPLVIQMTDDE-KY--LWK----DLTLDQ-AYGDAVENA 172 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH-H---HHHHHHHHHHTCCEEEEECHHH-HH--HHS----SCCHHH-HHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHH-H---HHHHHHHHHhCCcEEEEEecce-ee--ecC----CCCHHH-HHHHHHHHH
Confidence 3467777777 556 8999999764 2 2344444437999887776322 11 110 345443 334433444
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
..+..+|+..+
T Consensus 173 ~~~lA~GlDp~ 183 (437)
T 1r6u_A 173 KDIIACGFDIN 183 (437)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 55555666543
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.2 Score=53.31 Aligned_cols=77 Identities=6% Similarity=-0.034 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.+++ -|+ |.+||||... .-.++++++..|+.++++.| |.|+.- . ....++. .+.++......
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~----~~~l~~lQ~~~g~~~i~lI~-D~ta~l--~---~~~~t~e-~i~~~~~~~~~ 168 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIP----FVFTKWLQEVFDVPLVIELT-DDEKFL--F---KHKLTIN-DVKNFARENAK 168 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHH----HHHHHHHHHHHTCCEEEEEC-HHHHHH--H---CTTCCHH-HHHHHHHHHHH
T ss_pred CCeEEEEee-cCCCCCccHHHHHH----HHHHHHHHHHcCCeEEEEEe-ccccee--C---CCCCCHH-HHHHHHHHHHH
Confidence 356666776 556 8999999764 22344544447999888887 333211 0 0124543 34444444555
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+.++|+..+
T Consensus 169 ~~lA~GlDp~ 178 (432)
T 2ip1_A 169 DIIAVGFDPK 178 (432)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCCC
Confidence 5666676654
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.31 Score=51.44 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
++++.|.+++ -|+| .+||||..+ +...+++++..|..+.+..| |.|. +.. ...++.+ +.++.....
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~----~~~~~~lQ~~~g~~~~i~Ia-D~~a--~l~----~~~~~e~-i~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIP----FLLCKYMQDAFKIRLVIQIT-DDEK--FLW----KSMRLED-AMAYGRENI 165 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHH----HHHHHHHHHHHTCCEEEEEC-HHHH--HHH----SSCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHH----HHHHHHHHHhcCCcEEEEee-ChHH--HcC----CCCCHHH-HHHHHHHHH
Confidence 4567777777 6777 899999553 44555555555888777544 4432 111 1245444 444455566
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
.++-++|+..+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 66667777664
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.28 Score=51.36 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=37.3
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc-ccccc-CCcccChhhhhhcCCCchhHHHHHhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG-KFSKS-KGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~-KMSKS-~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+|.|+.++... =--+....|. +.| .++.+.+|. ++|. ||||| .+|.|++.| +++.++=-+.+
T Consensus 230 vG~DQ~~hl~l-~Rdla~r~n~--~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k 294 (386)
T 3hzr_A 230 DSIKNVQFHSI-IDQIATTLNF--IQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINK 294 (386)
T ss_dssp EEGGGHHHHHH-HHHHHHHHTC--CCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHcCC--CCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHH
Confidence 59999654422 1122223343 345 455556664 7885 99999 899998764 24556655554
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.36 Score=49.36 Aligned_cols=78 Identities=8% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc-
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD- 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D- 110 (648)
-|+|.+||||..++ +. .++++++ |++++++.| |.|+.-. ..++.+ ..++......+|.++|++++
T Consensus 11 ~PTg~lHlG~~lg~-l~--~~~~lQ~--g~~~~~~ia-D~ha~~~-------~~~~~~-l~~~~~~~~~~~lA~Gldp~k 76 (322)
T 3tzl_A 11 QPSGDLHIGNYFGA-IK--QMVDAQE--KSQMFMFIA-NYHAMTS-------SQDGEK-LKQNSLKAAAAFLSLGIDPQK 76 (322)
T ss_dssp CCSSCCBHHHHHHT-HH--HHHHTTT--TSCCEEEEC-HHHHTTT-------CCCHHH-HHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCccccHHHHHHH-HH--HHHHHhc--CCCEEEEEe-cCeeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCccc
Confidence 46689999998874 32 2445444 999988776 5554221 114443 34445566677778899886
Q ss_pred --cccCCCchHHHHH
Q 006368 111 --NFGRTSTPQQTEA 123 (648)
Q Consensus 111 --~f~rT~~~~~~~~ 123 (648)
.|..+.-+.|.+.
T Consensus 77 ~~i~~qS~~~~~~el 91 (322)
T 3tzl_A 77 SVFWLQSDVKEVMEL 91 (322)
T ss_dssp SEEEEGGGCTHHHHH
T ss_pred eEEEECCcchhHHHH
Confidence 3444444555443
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.29 Score=51.15 Aligned_cols=66 Identities=17% Similarity=0.044 Sum_probs=37.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CCc-cccccC-CcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ESG-KFSKSK-GIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G~-KMSKS~-gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+++..- --+....|..+. ..++.+..|. + +|. |||||. +|.|++.| +++.++=-+.+
T Consensus 203 ~vpgG~DQ~~~l~l~-Rdla~r~~~~~~--~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D------~p~~i~~KI~k 272 (373)
T 3vgj_A 203 ICQLGIDQRKVNMLA-REYCDIKKIKKK--PVILSHGMLPGLLEGQEKMSKSDENSAIFMDD------SESDVNRKIKK 272 (373)
T ss_dssp EECCBGGGHHHHHHH-HHHHHHHTCSCC--CEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC------CHHHHHHHHHH
T ss_pred EEEcchhhHHHHHHH-HHHHHHhCCCCC--ceEEeCCeeecCCCCCCCCcCCCCCCeeecCC------CHHHHHHHHHh
Confidence 678999997654321 112222343211 1344556664 5 885 999999 58888754 24556555544
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=88.99 E-value=1 Score=47.27 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=22.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN~I~~~~ 366 (648)
+..+|.|+-+.... =--+....|. +.| .++.+-+|. ++| .|||||.+|.|++.|
T Consensus 227 lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p-~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 227 LIPQAIDQDPYFRL-TRDIAPRLGY--LKP-AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEGGGHHHHHH-HHHTHHHHTC--CCC-EEEEECCCCCC-------------CCBTTC
T ss_pred EEEeccchHHHHHH-HHHHHHHcCC--CCc-eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 67899999654321 1111122332 223 344556664 788 799999999998764
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=88.95 E-value=0.56 Score=50.59 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc--cchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~--~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
+++++|.+++ -|+ |.+||||..+ +-+.+++++..|+.++++.|-.+ .|+ ..++.+ +.++...
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~----~~~~~~lQ~~~g~~~iilI~D~~a~igd---------~lt~e~-i~~n~~~ 217 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIP----FIFTKWLQDVFNVPLVIQMTDDEKYLWK---------DLTLDQ-AYGDAVE 217 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHH----HHHHHHHHHHHTCCEEEEECHHHHHHHS---------SCCHHH-HHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHH----HHHHHHHHHHhCCcEEEEEecceeeecC---------CCCHHH-HHHHHHH
Confidence 3467777777 556 8999999765 22344433337999877776322 222 355444 4444444
Q ss_pred HHHHHhhcCcccc
Q 006368 98 HKDVYKWFDISFD 110 (648)
Q Consensus 98 ~~~~~~~l~i~~D 110 (648)
+...+-.+|+..+
T Consensus 218 ~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 218 NAKDIIACGFDIN 230 (477)
T ss_dssp HHHHHHTTCCCTT
T ss_pred HHHHHHHhCCCCC
Confidence 5556666777654
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=88.94 E-value=0.35 Score=52.18 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=31.8
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+|.|+.+.. .+=--+....|. +.|. .+.+-+|. ++| .|||||.+| .|++.|
T Consensus 309 vG~DQ~~~i-~l~Rdla~r~~~--~~p~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 309 CAIDQDPYF-RMTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEGGGHHHH-HHHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ccccHHHHH-HHHHHHHHHhCC--CCce-eeecccccCCCCCccccCCCCCCCceeecC
Confidence 799996543 221122333443 3443 35556664 899 899999999 888764
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.71 Score=48.24 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHH---HHHHHHH-HHH
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI---CDKYHVI-HKD 100 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~---~~~~~~~-~~~ 100 (648)
.|.+++ -|+|.+||||+.+ .+ .+.++++ .|++++++.|- .|+.-. . -..+.++ ...+.+. +..
T Consensus 37 ~vy~G~-~PTG~lHlG~~~~-~l---~~~~~~q-~g~~~i~~I~D-~ha~t~--~----~~~~~~l~~~~~~~~~~~i~~ 103 (372)
T 1n3l_A 37 KIYWGT-ATTGKPHVAYFVP-MS---KIADFLK-AGCEVTILFAD-LHAYLD--N----MKAPWELLELRVSYYENVIKA 103 (372)
T ss_dssp EEEEEE-CCSSCCBGGGHHH-HH---HHHHHHH-TTCEEEEEECH-HHHHHT--T----TTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCc-CCCCcccHHHHHH-HH---HHHHHHH-CCCCEEEEEcC-CceeeC--C----CCCHHHHHHHHHHHHHHHHHH
Confidence 344444 2668999999775 23 3555555 69998776662 111100 0 0123333 2333333 555
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+.++|+.++
T Consensus 104 ~lla~Gldp~ 113 (372)
T 1n3l_A 104 MLESIGVPLE 113 (372)
T ss_dssp HHHHHTCCCT
T ss_pred HHHHcCCChh
Confidence 6788899886
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=88.44 E-value=1.1 Score=47.87 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.+++ -|+ |.+||||..+ +-.++++++..|..+.+..| ++ .....+...++. -+.++...+.
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~----~~~l~~lQ~~~g~~v~I~Ig-----D~-~a~~~r~~lt~E-~I~~n~~~~~ 156 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLP----FIFTKYLQDAFKCYVVIQIT-----DD-EKFLRNRSLSYA-EVDSYTRENI 156 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH----HHHHHHHHHHHTCEEEEEEC-----HH-HHHHHCTTCCHH-HHHHHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHH----HHHHHHHHHccCceEEEEee-----Cc-HHhhcccCCCHH-HHHHHHHHHH
Confidence 3567777877 566 8999999654 44455555555877777533 33 111122245654 4555556677
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
..+-++|+..+
T Consensus 157 ~~~lA~GlDpe 167 (451)
T 3foc_A 157 KDIIACGFDPD 167 (451)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCCC
Confidence 77788888765
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=87.65 E-value=0.93 Score=47.57 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=24.3
Q ss_pred CcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 305 NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 305 ~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
|+..+..+|.|+.+.+.. =--+....+. +.| .++.+-+|. ++| .|||||.+| .|++.|
T Consensus 219 di~~lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p-~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 219 DIHCLVPHAIDQDPYFRM-VRDVAPRLGY--LKP-SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp CCCEEEEEEGGGHHHHHH-HHHHTGGGTC--CCC-EEEEECCCCC-------------CCCCBTTC
T ss_pred CCceecccccchHHHHHH-HHHHHHHcCC--CCc-eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 443356899999654321 1112223333 233 344556664 789 799999988 787754
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=0.85 Score=48.51 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=27.9
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+..+|.|+.+.... =--+....|. +.|. .+.+.+|. ++| .|||||.+| .|++.|
T Consensus 252 lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p~-~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 252 LIPCAIDQDPYFRV-CRDVADKLKY--SKPA-LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHTS--CCCE-EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred EEEeccCcHHHHHH-HHHHHHHhCC--CCce-eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 56699999654321 1112223343 3443 45556664 899 899999999 888765
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.29 E-value=0.62 Score=48.68 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH----HHHHHHHHH
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC----DKYHVIHKD 100 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~----~~~~~~~~~ 100 (648)
.|.+++ -|+|.+||||...+ .-.+++++ ..|++++++.| |.|+.- -.+.|.++.++. ..+...+..
T Consensus 35 ~vy~G~-~PTg~lHlG~yl~~---l~~~~~lQ-~~G~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 35 QHYIGF-EISGYIHLGTGLMA---GAKIADFQ-KAGIKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGMEK 104 (375)
T ss_dssp BEEEEE-CCCSCCBHHHHHHH---HHHHHHHH-HTTCBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHHH
T ss_pred EEEeCC-CCCCCcCchHHHHH---HHHHHHHH-HCCCcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333444 45589999994433 33455554 46999888776 222211 112233333332 223334448
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
+|..+|+.++
T Consensus 105 ~~la~G~dp~ 114 (375)
T 2cyc_A 105 SIEVMGGDPK 114 (375)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHhCCCcc
Confidence 8899999876
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=87.14 E-value=0.8 Score=48.74 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=31.7
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+|.|+.+... +=--+....|. +.|. ++.+-+|. ++| .|||||.+| .|++.|
T Consensus 262 vG~DQ~~~i~-l~Rdla~r~~~--~~P~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 262 CAIDQDPYFR-MTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEGGGHHHHH-HHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred eehhhHHHHH-HHHHHHHHhCC--CCce-EeecccccCCCCCccccCCCCCCCeeeccC
Confidence 7999964432 11122233342 3443 35556664 899 899999999 898764
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.46 Score=49.18 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+..|.+++ -|+|.+||||... +.-.+++++ ..|++++++.| |.|+.- -...|.++. -+.++...+.+.+
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~---~l~~~~~lQ-~~G~~~~~~i~-D~~a~~----~~~~~~~~e-~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALI---TVMNTNNMI-ECGGQMIIYIA-DWFAKM----NLKMNGDIN-KIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHH---HHHHHHHHH-HTTEEEEEEEC-HHHHHH----TTGGGGCHH-HHHHHHHHHHHHH
T ss_pred CCEEEecc-CCCCCCchhHHHH---HHHHHHHHH-HcCCcEEEEec-cchhhh----CCCCCCCHH-HHHHHHHHHHHHH
Confidence 34444544 4559999999333 234455555 45999888776 223211 111123443 3444555666667
Q ss_pred hhcCcccc
Q 006368 103 KWFDISFD 110 (648)
Q Consensus 103 ~~l~i~~D 110 (648)
..+|+..+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 77777764
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=86.68 E-value=0.9 Score=46.80 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=48.1
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
+++ -|+|.+||||..+ .+ +.+.+++ +++++|..+ |.|..-. ..+|. .+.++......+|.++|
T Consensus 20 sG~-~PTG~lHLGh~vg-~l-----~~~~~lQ~~~~~~~~ia-D~hA~t~-------~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 20 SGA-QPSGELTIGNYMG-AL-----RQWVQMQDDYDCIYCIV-DLHAITA-------RQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEE-CSCSCCBHHHHHH-TH-----HHHHTTTTTSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHHT
T ss_pred ECc-CCCCcccHHHHHH-HH-----HHHHHHHhhCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHHHHcC
Confidence 443 5669999999876 33 3443444 788877654 5554321 23443 44455566777888899
Q ss_pred cccc---cccCCCchHHHH
Q 006368 107 ISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 107 i~~D---~f~rT~~~~~~~ 122 (648)
+..+ .|..+.-+.|.+
T Consensus 84 lDp~k~~if~qS~v~~~~e 102 (346)
T 3n9i_A 84 IDPKKSTIFVQSHVPEHSQ 102 (346)
T ss_dssp CCTTTSEEEEGGGCTHHHH
T ss_pred CCccceEEEeccccccchH
Confidence 9886 354454455544
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=86.48 E-value=0.7 Score=47.36 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=39.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--ecee-ecCC--ccccccCCc-c--cChhhhhhcCCCchhH
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYL-NYES--GKFSKSKGI-G--VFGNDAKDTNIPVEVW 377 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l-~~~G--~KMSKS~gN-~--I~~~~~l~~~~~~d~l 377 (648)
+..+|.|+...... +-..+=...|.-++.|..++. +..| .++| +|||||.+| . |++.| +++.+
T Consensus 140 ~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d------~~~~i 213 (328)
T 1i6k_A 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD------DAKTI 213 (328)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC------CHHHH
T ss_pred EEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC------CHHHH
Confidence 78899999764422 111111112222345666654 3444 4788 899999999 6 87754 24455
Q ss_pred HHHHhh
Q 006368 378 RYYLLT 383 (648)
Q Consensus 378 R~~ll~ 383 (648)
+==+.+
T Consensus 214 ~~KI~~ 219 (328)
T 1i6k_A 214 EKKIKS 219 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.47 Score=49.76 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+-.+|.|+.+.+. +=--+....|. +.|.. +.+.+|. ++| +|||||.+| .|++.|
T Consensus 210 ~vpvG~DQ~~hl~-l~Rdla~r~n~--~~p~~-l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 210 LIPAAIDQDPYWR-LQRDFAESLGY--YKTAA-LHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp EEEEEGGGHHHHH-HHHHHTGGGTS--CCCEE-EEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred eeecccchHHHHH-HHHHHHHHcCC--CCCee-eecccccCCCCCccccccCCCCCeeeCCC
Confidence 3489999975432 21122223342 34443 4466664 788 599999998 887653
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=85.66 E-value=1.2 Score=46.37 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=43.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.|.+++ -|+|.+|||| + ++..-.++++ ...|++|+++.| |-|+.- -...|.++.+ +..+...+.+.|..
T Consensus 58 ~iy~G~-~PTg~lHlG~--g-vl~~~~~~~l-Q~~G~~~~~lIa-D~ha~i----~d~~~~~~~~-i~~~~~~~~~~~~a 126 (373)
T 3vgj_A 58 ICYDGF-EPSGRMHIAQ--G-LLKSIIVNKL-TSNGCTFIFWIA-DWFAHL----NNKMSGDLKK-IKKVGSYFIEVWKS 126 (373)
T ss_dssp EEEEEE-CCCSSCBHHH--H-HHHHHHHHHH-HTTTCEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred eEEeCC-CCCCCceehh--h-HHHHHHHHHH-HHCCCcEEEEEe-cceeEe----cCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 333444 4558999999 3 3322234444 456999988777 444331 0112333333 34444556678889
Q ss_pred cCcccc
Q 006368 105 FDISFD 110 (648)
Q Consensus 105 l~i~~D 110 (648)
+|++.+
T Consensus 127 ~G~dp~ 132 (373)
T 3vgj_A 127 CGMNME 132 (373)
T ss_dssp TTCCST
T ss_pred cCCChh
Confidence 999876
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=85.64 E-value=0.6 Score=48.30 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--ecee-ecCC--ccccccCCc---ccChhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYL-NYES--GKFSKSKGI---GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l-~~~G--~KMSKS~gN---~I~~~~ 366 (648)
+..+|.|+...+.. +-+.+=...|.-++.|..++. +..| .++| +|||||.+| .|++.|
T Consensus 150 ~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 150 IVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred EEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 68899999765422 112211112322335655554 3455 3788 899999999 887765
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.30 E-value=0.58 Score=48.90 Aligned_cols=68 Identities=24% Similarity=0.109 Sum_probs=39.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCC---c---ccCceEEeeceee-cCC------------------ccccccC-Cccc
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGEN---W---TLMKTISVTEYLN-YES------------------GKFSKSK-GIGV 362 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~---~---~~p~~~~~hg~l~-~~G------------------~KMSKS~-gN~I 362 (648)
+..+|.|+...+.. =--+....+.. + .++..++.+..|. ++| .|||||. +|.|
T Consensus 183 ~vp~G~DQ~~~i~l-~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I 261 (375)
T 2cyc_A 183 IAHAGMDQRKAHVI-AIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV 261 (375)
T ss_dssp EEEEEGGGHHHHHH-HHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC
T ss_pred eecccchHHHHHHH-HHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCee
Confidence 68899999755432 11122223320 0 1112344455664 777 8999999 7888
Q ss_pred ChhhhhhcCCCchhHHHHHhh
Q 006368 363 FGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 363 ~~~~~l~~~~~~d~lR~~ll~ 383 (648)
++.|- ++.+|=.+.+
T Consensus 262 ~L~d~------p~~i~~KI~~ 276 (375)
T 2cyc_A 262 FIHDS------PEEIRQKLRK 276 (375)
T ss_dssp BTTCC------HHHHHHHHHH
T ss_pred ccCCC------HHHHHHHHHH
Confidence 87642 5666666655
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=84.95 E-value=1.8 Score=45.53 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~-gN~I~~~~ 366 (648)
+..+|.|+.+.... =--+....+. +.|. .+.+-+|. ++| .|||||. +|.|++.|
T Consensus 246 lvpvG~DQ~~~i~l-~Rdla~r~~~--~~p~-~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 246 LVPAAVDQDPFFRL-ARDKAKALGE--KKPS-SIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHTC--CCCE-EEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred EEeeccchHHHHHH-HHHHHHHcCC--CCce-eeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 56789999654322 1112222343 2333 34556664 899 6999999 78997764
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=83.10 E-value=2.2 Score=44.04 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=32.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CC-ccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G-~KMSKS~-gN~I~~~~ 366 (648)
+..+|.|+...+.. =--+....+.. .| .+..+..|. + +| .|||||. +|.|++.|
T Consensus 189 ~~~~G~DQ~~~i~l-~Rdia~r~~~~--~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 189 ICQLGIDQRKVNML-AIEYANDRGLK--IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp EECCBGGGHHHHHH-HHHHHHHTTCC--CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred EEEeccChHHHHHH-HHHHHHHhCCC--Cc-eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 67899999755422 11122233432 23 344455664 6 67 6999999 68897764
|
| >2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=82.38 E-value=0.57 Score=45.30 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
.+++.+++++++|+||+..++|+|+ +.|||+|+
T Consensus 140 VGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~G 172 (241)
T 2e8g_A 140 VGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTN 172 (241)
T ss_dssp EEEEEEEEECTTCTTCEEEEEECSS-CEEEEEES
T ss_pred EEEEEEEEECCCCCccEEEEEEeCC-ceEEEEEC
Confidence 3455677889999999999999976 68999985
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=81.96 E-value=0.91 Score=48.36 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.5
Q ss_pred EEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc--cccccCCc-ccChh
Q 006368 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG--KFSKSKGI-GVFGN 365 (648)
Q Consensus 310 ~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~--KMSKS~gN-~I~~~ 365 (648)
-.+|.|+.+.+.. =--+....|. +.| .++.+.+|. ++|. |||||.+| .|.+.
T Consensus 291 VPvG~DQ~~hlel-~Rdia~rfn~--~~p-~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 291 IASGIEQDPYFRL-ARDLAPRMGH--PKN-AYLLGKFLPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp EEECTTTHHHHHH-HHHHTTTTTS--CCC-EEEEECCCCBTTBTTCCCCTTCGGGSCBTT
T ss_pred eeeecchHHHHHH-HHHHHHHhCC--CCC-eeecCCcccCCCCCCCccCCCCCCCeeeec
Confidence 3579999765432 1122223332 233 344556664 7885 99999987 67654
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=81.56 E-value=1.9 Score=44.63 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=47.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
.|.+++ -|+|.+||||..+. + ..+.+++ .++++++.| |.|+.-.- ..++.++ .++...+..+|.
T Consensus 24 ~vysG~-~PTG~lHLGn~~g~-l-----~~~~~lQ~~~~~~~~Ia-D~ha~~~~------~~~~e~i-~~~~~~~~~~~l 88 (351)
T 1yi8_B 24 RVLTGD-RPTGALHLGHLAGS-L-----QNRVRLQDEAELFVLLA-DVQALTDH------FDRPEQV-RENVLAVALDYL 88 (351)
T ss_dssp EEEEEE-CCSSCCBHHHHHHT-H-----HHHHHHTSSSEEEEEEC-HHHHHHHH------TTCHHHH-HHHHHHHHHHHH
T ss_pred EEEEee-CCCCCccHHHHHHH-H-----HHHHHHHHhCCeEEEEe-cchhhcCC------CCCHHHH-HHHHHHHHHHHH
Confidence 344443 45699999998863 3 2332222 378866554 44443211 3455444 444556677788
Q ss_pred hcCcccc---cccCCCchHHHHH
Q 006368 104 WFDISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 104 ~l~i~~D---~f~rT~~~~~~~~ 123 (648)
++|+.++ .|....-+.|.+.
T Consensus 89 a~Gldp~k~~i~~qS~~~~~~el 111 (351)
T 1yi8_B 89 AAGLDPQKTTCVVQSAVPELAEL 111 (351)
T ss_dssp HHTCCTTTEEEEEGGGCTHHHHH
T ss_pred HhCCChhhcEEEEcCchhhHHHH
Confidence 8999886 3433333555443
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.35 E-value=1.7 Score=44.62 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCC-CceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRG-YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G-~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D 110 (648)
-|+|.+||||..+. + --+.++ +..| ++++++.| |-|+.-.- + +.+|. .+.++......++.++|+.++
T Consensus 9 ~PTg~lHlGh~~g~-l--~~~~~l-Q~~G~~~~~~~Ia-D~~a~~~~----~-~~~~~-~i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 9 QPSGEIHIGNYLGA-I--KQWVAI-GEKLGRDAFFCIV-DYHALTNP----L-AYDPS-TLAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp CSCSCCBHHHHHTH-H--HHHHHH-HHHHGGGEEEEEC-GGGGGGST----T-TSCHH-HHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHH-HhcCCCCEEEEEe-CceeecCC----C-CCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 34588999998863 3 223333 3457 89877665 22332110 0 23333 334444556667788999876
Q ss_pred ---cccCCCchHHHHHH
Q 006368 111 ---NFGRTSTPQQTEAC 124 (648)
Q Consensus 111 ---~f~rT~~~~~~~~v 124 (648)
.|....-+.|.+..
T Consensus 78 k~~i~~qS~~~~~~el~ 94 (337)
T 2el7_A 78 KVTLFVQSHVPEHTELS 94 (337)
T ss_dssp TSEEEEGGGSTHHHHHH
T ss_pred heEEEEcCcchhhHHHH
Confidence 34444445555443
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=80.26 E-value=2.1 Score=48.23 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+..|.+++ -|+|.+|||| + ++..-.+++ +...|++|+++.| |-|+.-. .+.|.++.+ +..+.....++|
T Consensus 40 ~~~vy~G~-~PTg~lHLG~--~-v~~~~~~~~-lQ~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~ 108 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQ--G-IFKAVNVNK-CTAAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVW 108 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHH--H-HHHHHHHHH-HHHTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHH
T ss_pred CceEEeee-cCCCcchhHh--h-HHHHHHHHH-HHHCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHH
Confidence 44555655 6678999999 3 232222444 4456999988776 4454310 011223222 333445566778
Q ss_pred hhcCcccc
Q 006368 103 KWFDISFD 110 (648)
Q Consensus 103 ~~l~i~~D 110 (648)
..+|+..+
T Consensus 109 lA~GlDp~ 116 (690)
T 3p0j_A 109 KAAGMDMD 116 (690)
T ss_dssp HHTTCCGG
T ss_pred HHcCCChH
Confidence 88888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 648 | ||||
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 5e-71 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 1e-65 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-50 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 3e-38 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 4e-38 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-29 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 2e-25 | |
| d1rqga1 | 210 | a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me | 2e-22 | |
| d2d5ba1 | 152 | a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me | 3e-21 | |
| d1pfva1 | 162 | a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me | 2e-18 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 2e-15 | |
| d1rqga3 | 35 | g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (Me | 1e-14 | |
| d1pfva3 | 35 | g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (Me | 4e-12 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 2e-09 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 4e-04 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 232 bits (591), Expect = 5e-71
Identities = 101/394 (25%), Positives = 172/394 (43%), Gaps = 53/394 (13%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 61 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V V
Sbjct: 121 ISQLYDPEKGMFLPDRFV-------------------------------------VSGAT 143
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + + G+ + W + GL+ I+RD +
Sbjct: 144 PVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAPY 199
Query: 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKD 315
+ K FYVW DAPIGY+ ++ ++++WK ELY F+GKD
Sbjct: 200 -FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258
Query: 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVE 375
V FH++ +P+ L G+ + V Y+ K SKS+G + + + +
Sbjct: 259 IVYFHSLFWPAMLEGSNFRK--PSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDAD 315
Query: 376 VWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLN 408
RYY + D D + N +++N
Sbjct: 316 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 217 bits (554), Expect = 1e-65
Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 59/400 (14%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+++
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++ +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Q YC+ K F + +C
Sbjct: 124 QAYCEHDKMF-------------------------------------LPDRFAICGRPIS 146
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL WG+
Sbjct: 147 FRDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGI 202
Query: 264 PVPLERFK--EKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPE-NVELYQFMGK 314
PVPL+ KV YVWF+APIGY+SIT + NEW+++W N + + F+GK
Sbjct: 203 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGK 262
Query: 315 DNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
DN+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++ ++
Sbjct: 263 DNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHE 322
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNEL 406
D P + RYYL T PE D+ F+++D + + N EL
Sbjct: 323 FLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 176 bits (446), Expect = 2e-50
Identities = 89/387 (22%), Positives = 152/387 (39%), Gaps = 42/387 (10%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
PK D+ K + I++D+F RT+ + + Q + KK+ + +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC +C+RF ++ LVEG CP G E + + + +
Sbjct: 121 EYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRM-----EKYRPWLQEYIQ 175
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
P + +N + A A L + +
Sbjct: 176 ENPDLIRPE-------------------------GYRNEVLAMLAEPIGDLSISRPKSRV 210
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
WG+P+P + + V +VWFDA + YVS E + + + +GKD +
Sbjct: 211 PWGIPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWP----HAWHLIGKDILKP 264
Query: 320 HTVMFPSTLLGTGENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWR 378
H V +P+ + + ++V L + K SK+ G V + + R
Sbjct: 265 HAVFWPTM--LKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALR 321
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNE 405
YYLL P DT + L+ + +
Sbjct: 322 YYLLREIPYGQDTPVSEEALRTRYEAD 348
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 145 bits (366), Expect = 3e-38
Identities = 60/435 (13%), Positives = 120/435 (27%), Gaps = 66/435 (15%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
G + P N +PH+G+ D+F R+ +RGY A G D +G E
Sbjct: 35 KGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAPRRAGWDTHGLPVEL 93
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI 138
+ K I + F+ + T + +
Sbjct: 94 EVE-----KKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEA--FTERIAYWVDLEDA 146
Query: 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
T++ Y ++ L + G + + L P C C
Sbjct: 147 YATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPY---CPRCGTPLSSHEVALGYPHCWRC 203
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258
T F+ +++L + + + + L ++R+
Sbjct: 204 STPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEG---RYGEWLKNLVDWALSRN 260
Query: 259 LKWGVPVPLERFKE---------------------------------------------- 272
WG P+P+ +
Sbjct: 261 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320
Query: 273 ---KVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329
V VW+D+ + E + ++ + + + + F+++ +L
Sbjct: 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVML 380
Query: 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389
+ I L+ + K SKSKG V D + R+Y+ + P +
Sbjct: 381 FGSIAFK--NVICHGLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEA 437
Query: 390 DTLFTWADLQAKSNN 404
D F ++ +
Sbjct: 438 DRRFGPNLVRETVRD 452
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 144 bits (363), Expect = 4e-38
Identities = 67/416 (16%), Positives = 121/416 (29%), Gaps = 30/416 (7%)
Query: 6 EENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY 65
+NP PK GK +I P V H+G+ + + L D R+ R+RG+ A++
Sbjct: 21 AKNPFVANPK---SGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFEAVW 76
Query: 66 ICGTDEYGTATETKAME----DNCSPKEICDKYHVIHKDVYKWFDIS------------- 108
+ GTD G AT+ + + ++ + + +K
Sbjct: 77 LPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASA 136
Query: 109 -FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167
+ T +++ A + F + +C C+ L+D VE G
Sbjct: 137 DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSR-CG 195
Query: 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINN 227
E A Q + L LK + R L +++
Sbjct: 196 TPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLENVKDWNISRQLW 254
Query: 228 MSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVS 287
+ + T G P + E VF WF + + +S
Sbjct: 255 WGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRL--KRDEDVFDTWFSSALWPLS 312
Query: 288 ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL 347
+ P + G D + + + L
Sbjct: 313 TLGWPEETEDLKAFYPGD---VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVL 369
Query: 348 NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403
+ + K SKSKG + + + + R+ L+ D L+ N
Sbjct: 370 DEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMARN 424
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 120 bits (300), Expect = 2e-29
Identities = 46/324 (14%), Positives = 95/324 (29%), Gaps = 7/324 (2%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
K G+ + PY + H+G++ + DV ARF R++GY ++ G D +G
Sbjct: 25 AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFG 83
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKL 131
E A++ PK+ K+ + I +D T P+ Q IF K+
Sbjct: 84 LPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKM 143
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLK 191
+ +C C+ LA+ V + + + + + ++ +
Sbjct: 144 WEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERL 203
Query: 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSW---SQNAIQATHAWLKE 248
+ +++ ++ + + + + L
Sbjct: 204 LKDLEGLNWPEKVKAMQRAWIG-RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPV 262
Query: 249 GLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVEL 308
L D++ PLE E T ++ W +
Sbjct: 263 LLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDP 322
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTG 332
+ + P G
Sbjct: 323 HNDRLPFDPEKANAWMPVDQYIGG 346
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 107 bits (267), Expect = 2e-25
Identities = 55/411 (13%), Positives = 123/411 (29%), Gaps = 30/411 (7%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
G ++ PY N H+G+ + +L D R+ ++G+ A Y+ G D +G E
Sbjct: 45 KGNETFILHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ 103
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKWFDIS--------------FDNFGRTSTPQQTEAC 124
+ K++ + I F++ T P+ A
Sbjct: 104 ALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 125 QAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC------PFEGCNYESARGDQC 178
IF ++ D + + + + + LA+ +E P
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASIS 223
Query: 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSW--SQ 236
+ +L+A + + K + + + R + G ++
Sbjct: 224 KVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK 283
Query: 237 NAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--KVFYVWFDAPIGYVSITSCYTN 294
+ E R+ K +P F D + S +
Sbjct: 284 ETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRG 343
Query: 295 EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY-LNYESGK 353
E + ++Y + +++ G + K + + ++ E K
Sbjct: 344 VLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGV--SPYKFLLSHGFVMDGEGKK 401
Query: 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404
SKS G + + ++ R ++ + +D + L+ S++
Sbjct: 402 MSKSLGNVIVPDQVVKQK-GADIARLWVSSTDYL-ADVRISDEILKQTSDD 450
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 93.8 bits (232), Expect = 2e-22
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 20/209 (9%)
Query: 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVK 467
NNLGNF++R L+F+ + + +VP+ E +L + E++ K ++ E + +
Sbjct: 2 NNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYR 55
Query: 468 LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSF 527
K LK MS++S GN Y Q WK KED+ + S+ +V L LLEPF+P
Sbjct: 56 FKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDA 115
Query: 528 SVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFR 587
S ++ LNL K + +PAGHK+ P LFK++ DD++ +F
Sbjct: 116 SEKIWHLLNLDEVKRWE--------------FRELPAGHKVRKPEILFKKVTDDQIIYFI 161
Query: 588 SKFAGSQADRIIRAEAEAAKTAEQLKKTK 616
+ R + E + +
Sbjct: 162 LNYMAKGNPEGARILLDKYYKREDVIRVA 190
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 88.3 bits (218), Expect = 3e-21
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465
L ++LGN + R + + + +P+ E LA + + +
Sbjct: 1 LADDLGNLVQRTRAMLFR----FAEGRIPEPVAGEELAEGTGLAGR-------LRPLVRE 49
Query: 466 VKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMP 525
+K L+ AM+ N Y+ E + W+L+K++ V+ V + + + LL P MP
Sbjct: 50 LKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMP 109
Query: 526 SFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
E+ + L L+ E + + W + LF
Sbjct: 110 DKMAELRRALGLKEEVRLEEAER----------WGLAEPRPIPEEAPVLFP 150
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 80.9 bits (199), Expect = 2e-18
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)
Query: 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471
N +R FI K + ++ QL KT + E EA E + +
Sbjct: 3 NLASRNAGFINK----RFDGVLASE--LADPQLYKTFTDAA----EVIGEAWESREFGKA 52
Query: 472 LKTAMSISSEGNAYLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSV 529
++ M+++ N Y+ E W + K++ + + L +L L+P +P +
Sbjct: 53 VREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTE 112
Query: 530 EVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
LN + + GHK+ L+ + +VE
Sbjct: 113 RAEAFLN---------------TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVE 152
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 32/368 (8%), Positives = 77/368 (20%), Gaps = 72/368 (19%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G++ + + + H+GN + +A + R +GY +I D+Y +
Sbjct: 15 GEKEKYVVESGITPSGYVHVGNF-RELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 73
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
+ + + ++ E +D + E
Sbjct: 74 RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFM------RKFEEEVEKLGIEVDLLYASE 127
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ Y + + R + ++ + + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEW 187
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ G + H + R
Sbjct: 188 D------------------------------GGWKVKYKCPEGHEGWVDIRSGNVKLRWR 217
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
+ G T + + P +
Sbjct: 218 VDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLS-------------L 264
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
+ + GK S SKG + +D + + + R+
Sbjct: 265 MYEFV---------------------GIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRF 302
Query: 380 YLLTNRPE 387
+RP
Sbjct: 303 IYARHRPN 310
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Score = 65.8 bits (161), Expect = 1e-14
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195
V GTCP+ C E +GDQCE CG+ L L +P+C
Sbjct: 1 VIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRC 35
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Score = 58.5 bits (142), Expect = 4e-12
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPK 194
V+GTCP C GD CE CG + T+L +PK
Sbjct: 1 VKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPK 34
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (137), Expect = 2e-09
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
V ++ H+G+ V + DV AR+ R GY Y+ + +A E+ S +
Sbjct: 30 ITVYDLCHIGHGRTFV-AFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAM 88
Query: 91 CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150
D+ + +I + +T E + ++L+ D
Sbjct: 89 VDRMIAEMHKDFDALNILRPDMEPRATHHIAE-IIELTEQLIAKGHAYVADNGDVMFDVP 147
Query: 151 K 151
Sbjct: 148 T 148
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 4/127 (3%)
Query: 277 VWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336
+ K N G D + H + +
Sbjct: 191 EPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQY 250
Query: 337 LMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396
+ + + + K SKS G D E RY+L++ S ++
Sbjct: 251 -VNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMSGHYR-SQLNYSEE 307
Query: 397 DL-QAKS 402
+L QA++
Sbjct: 308 NLKQARA 314
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 648 | |||
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.96 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.95 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.92 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.91 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.78 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.74 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.27 | |
| d1rqga3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro | 99.26 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.13 | |
| d1pfva3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch | 99.11 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.07 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.02 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.0 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 98.73 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 98.57 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 97.44 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 97.27 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 96.75 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 96.34 | |
| d1li5a1 | 87 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 95.4 | |
| d1pyba_ | 107 | Structure-specific tRNA-binding protein TRBP111 {A | 94.29 | |
| d1mkha_ | 107 | C-terminal domain of methionyl-tRNA synthetase, Me | 92.68 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 92.31 | |
| d1pxfa_ | 111 | Structure-specific tRNA-binding protein TRBP111 {E | 91.75 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 90.11 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 90.1 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 89.03 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 86.38 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 84.9 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 84.81 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-68 Score=564.49 Aligned_cols=341 Identities=30% Similarity=0.590 Sum_probs=309.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
|+|+||+|+|||||+|||||||+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++++++++++...|.++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~-~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 80 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 80 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCCCccccccHH-HHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHH
Confidence 68999999999999999999998 78899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
++.|+|+++.+++|.++.|.+.+++++++|.++|++|++.+.++||+.|++|++|+++
T Consensus 81 ~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~---------------------- 138 (350)
T d1pfva2 81 FAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV---------------------- 138 (350)
T ss_dssp HHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT----------------------
T ss_pred HHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee----------------------
Confidence 9999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccC-
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK- 260 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~- 260 (648)
.||.+++.+++++|||+|++|++.|.++++... |+++..+.+..++.+++.+|++||+..
T Consensus 139 ---------------~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 199 (350)
T d1pfva2 139 ---------------VSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGA----LQEQVANKMQEWFESGLQQWDISRDAPY 199 (350)
T ss_dssp ---------------TTCCCCEEEEEEEEEECGGGGHHHHHHHHTTSC----SCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred ---------------ccCCCccceecchheeehHHHHHHHHHHhhcCC----CchhhHHHHHHHhhccCCcccccccccc
Confidence 357788889999999999999999999997753 788888888899999999999999875
Q ss_pred CCcccCCcCCCCceeeeeecccchHHHhcccc------chHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC
Q 006368 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (648)
Q Consensus 261 WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~ 334 (648)
||+++|.+ ++.++|+|++++..|++....+ ...|..||......+++|+.|+|++++|+.++++++++.+.
T Consensus 200 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~- 276 (350)
T d1pfva2 200 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNF- 276 (350)
T ss_dssp SSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB-
T ss_pred CCccccCC--CCcccccccccccchhhhhhccccccccchhhhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCC-
Confidence 69999977 6999999999999998765333 23466666544455679999999999999999999998764
Q ss_pred cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCC-CCCccccHHHHHHHhhHHHHHH
Q 006368 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNN 409 (648)
Q Consensus 335 ~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~-~~d~~fs~~~~~~~~n~~l~~~ 409 (648)
.++.++++||||+++|+|||||+||+|+|.|+++ .||+|+|||||++..+. .+|++||++.|.+++|++|+|+
T Consensus 277 -~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~-~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~~n~ 350 (350)
T d1pfva2 277 -RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 350 (350)
T ss_dssp -CCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred -CccceEEecccEEECCeEccCcCCCCCCHHHHHH-HCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHccCC
Confidence 4788999999999999999999999999999998 79999999999986544 5789999999999999988763
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=3.8e-65 Score=542.33 Aligned_cols=343 Identities=39% Similarity=0.790 Sum_probs=309.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
.+|+||+|+|||||+|||||++++||.+|+++||+|++||+|+|++|+|+||+||+.+|+++|++|+++++.+...+.++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~ 81 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 57999999999999999999988789899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
+..+++.++.+.+|.++.+...++.++..+.++|.+|++...++||+.|++|++
T Consensus 82 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 135 (361)
T d1rqga2 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLP-------------------------- 135 (361)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCC--------------------------
T ss_pred ccccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecc--------------------------
Confidence 999999999999999999999999999999999999999999999999888765
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
+.|.+||.+++.+..++|||+++.+++.+.+.+.... |.+.....+.+++.+++.||+|||++.|
T Consensus 136 -----------~~~~~~g~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~isr~~~w 200 (361)
T d1rqga2 136 -----------DRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLNW 200 (361)
T ss_dssp -----------GGGTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred -----------cccccCCCcccccccceEEEecchhhhhhhhcccccc----cccchhhhhhhccccccccccccccccc
Confidence 3577889999999999999999999999999998764 6777777788999999999999999999
Q ss_pred CcccCCcC--CCCceeeeeecccchHHHhcc------ccchHHHhhcC-CCCCcceEEEEeccccchhHhHHHHHhhhcC
Q 006368 262 GVPVPLER--FKEKVFYVWFDAPIGYVSITS------CYTNEWEQWWK-NPENVELYQFMGKDNVPFHTVMFPSTLLGTG 332 (648)
Q Consensus 262 Gi~vP~~~--~~~~v~yVWfDa~~~yis~~~------~~~~~~~~~w~-~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g 332 (648)
|+++|.+. ..++++++|++++..+.+... ++..++..++. ...+...+|++|.|+.++|...|++++++.+
T Consensus 201 g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~ 280 (361)
T d1rqga2 201 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYG 280 (361)
T ss_dssp SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred cccCccccccCCCeEEEeecccccccccccccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhh
Confidence 99999874 457899999999999887543 23333333332 1234456899999999999999999999977
Q ss_pred C--------CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhH
Q 006368 333 E--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (648)
Q Consensus 333 ~--------~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 404 (648)
. .+++|+++++||||+++|+|||||+||+|+|.|+++ .||+|+|||||++.+|.++|+|||++.|++++|+
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~-~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~ 359 (361)
T d1rqga2 281 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 359 (361)
T ss_dssp CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred ccccccccccCCCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHH-HcCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhcc
Confidence 3 256789999999999999999999999999999998 7999999999999899999999999999999988
Q ss_pred HH
Q 006368 405 EL 406 (648)
Q Consensus 405 ~l 406 (648)
||
T Consensus 360 ~~ 361 (361)
T d1rqga2 360 EL 361 (361)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-65 Score=556.43 Aligned_cols=342 Identities=20% Similarity=0.259 Sum_probs=294.3
Q ss_pred CCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----CCCH-----
Q 006368 17 PIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----NCSP----- 87 (648)
Q Consensus 17 ~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g~~~----- 87 (648)
|..++++|+||+|||||||+||||||++ ||.+||++||+|++||+|+|+||+|+||++|+.+|++. |..+
T Consensus 29 ~~~~~~~f~i~~~pPy~NG~lHlGH~~~-yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~ 107 (425)
T d1ivsa4 29 PKSGKPPFVIFMPPPNVTGSLHMGHALD-NSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGR 107 (425)
T ss_dssp TTCCSCEEEEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTT
T ss_pred CCCCCCcEEEEcCCCCCCCCchhhHHHH-HHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcH
Confidence 4456788999999999999999999999 78899999999999999999999999999999999875 4433
Q ss_pred -------HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccc
Q 006368 88 -------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (648)
Q Consensus 88 -------~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (648)
..++.++.+.+.+.+++||+..| .+.+|+++.|.+.++++|.+|.++|+||++.+.++||+.|++++++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~ 187 (425)
T d1ivsa4 108 EKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeecccccccccccccc
Confidence 34556778899999999999886 467899999999999999999999999999999999999999999887
Q ss_pred ccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHH
Q 006368 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA 238 (648)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~ 238 (648)
+.+ |.+||+.++...+++||++++++.+.+..+.+..+.. ..|...
T Consensus 188 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pe~~ 233 (425)
T d1ivsa4 188 VET---------------------------------CSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIA-FVPERW 233 (425)
T ss_dssp EEE---------------------------------ETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCE-ESSSTH
T ss_pred ccc---------------------------------ccccCcccccccccchhhccchhhccchhhhhcCCcc-eecccc
Confidence 664 3445788888999999999999999999998876532 134555
Q ss_pred HHHHHHHHhcccccceeeeccCCCcccCCcC-------------------------------CCCceeeeeecccchHHH
Q 006368 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLER-------------------------------FKEKVFYVWFDAPIGYVS 287 (648)
Q Consensus 239 ~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~-------------------------------~~~~v~yVWfDa~~~yis 287 (648)
......|+. ++.||+|||++.||+++|.+. ...+++||||||+++|++
T Consensus 234 ~~~~~~~~~-~l~d~~isr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~ 312 (425)
T d1ivsa4 234 KKVNMDWLE-NVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLS 312 (425)
T ss_dssp HHHHHHHHH-TCCCEECEECCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTT
T ss_pred ceeeehhhh-hcCcceeecccccCCccceeeccCcceeecCccccccccccccccccCccccccCccccccccchhHHHH
Confidence 555566666 699999999999999999631 135799999999999998
Q ss_pred hccc--cchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeece-eecCCccccccCCcccCh
Q 006368 288 ITSC--YTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY-LNYESGKFSKSKGIGVFG 364 (648)
Q Consensus 288 ~~~~--~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~-l~~~G~KMSKS~gN~I~~ 364 (648)
.+.. ....|..||+ .+ +|++|+||++||+++||+++++++.. .+++++++||| |+++|+|||||+||+|++
T Consensus 313 ~~~~~~~~~~~~~~~p--~d---i~~~G~Di~~~h~~~~~a~~~~~~~~-~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~ 386 (425)
T d1ivsa4 313 TLGWPEETEDLKAFYP--GD---VLVTGYDILFLWVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKGQKMSKSKGNVIDP 386 (425)
T ss_dssp TTTTTTTCSHHHHSCS--BS---CEEEEGGGTTTTHHHHHHHHHHHSSS-CSBSEEEEECCEECTTSSBCBTTTTBCCCH
T ss_pred hhCCCcChHHHhCCCC--ce---EEEEEehhhhHHHHHHHHHHHHhcCC-CccceEEEcceEECCCCCCcCCCCCCCcCH
Confidence 6522 2346777774 45 89999999999999999999987764 35699999999 569999999999999999
Q ss_pred hhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 365 ~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
.++|+ .||+|+|||||++.+|.++|++|+++.+.++
T Consensus 387 ~e~l~-~~g~D~lR~~L~~~~~~~~d~dF~~~~~~~~ 422 (425)
T d1ivsa4 387 LEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA 422 (425)
T ss_dssp HHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred HHHHH-HcCchHHHHHHHhcCCCCCCCccCHHHhhhc
Confidence 99999 7999999999999899999999999988765
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.4e-65 Score=560.89 Aligned_cols=344 Identities=19% Similarity=0.258 Sum_probs=291.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC------------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS------------ 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~------------ 86 (648)
.++++|+|++|||||||+||||||++ ||.+||++||+|++||+|+|++|+|+||+||+.+|++++..
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~-~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~ 113 (452)
T d1ilea3 35 KGGPRYTVYEGPPTANGLPHVGHAQA-RSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (452)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHH-HHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCCEEEecCCCCCCCcchhhhHHH-HHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHH
Confidence 35678999999999999999999999 78899999999999999999999999999999999988753
Q ss_pred -----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 87 -----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 87 -----~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
+++++..+...+.+++..+|++.| .+++|+++.|.+.++++|.+|+++|+||.+.+.++||+.|+++++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~ 193 (452)
T d1ilea3 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (452)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccccccccccc
Confidence 356666777888899999999886 5779999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHH
Q 006368 160 EGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAI 239 (648)
Q Consensus 160 ~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (648)
++.||. |++||++++.+++.+||++++.+++.+..++..... +|....
T Consensus 194 ~~~~p~-----------------------------c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~ 241 (452)
T d1ilea3 194 ALGYPH-----------------------------CWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHW---VPPHIK 241 (452)
T ss_dssp HHTEEB-----------------------------CSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEE---SSGGGT
T ss_pred cccCCC-----------------------------ccCcCCceEEeeccchhhhhccchhhhhhhhccccc---Ccchhh
Confidence 988775 788999999999999999999999999999987654 233332
Q ss_pred HHHHHHHhcccccceeeeccCCCcccCCcC-------------------------------------------------C
Q 006368 240 QATHAWLKEGLKVRCITRDLKWGVPVPLER-------------------------------------------------F 270 (648)
Q Consensus 240 ~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~-------------------------------------------------~ 270 (648)
.....++.+++.||+|||++.||+|+|.+. .
T Consensus 242 ~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (452)
T d1ilea3 242 EGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRR 321 (452)
T ss_dssp TTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEE
T ss_pred hceeeeeccCCccceeecccccccCCccccccccCcccccchhhhhhhhhccccCccccccccccccccccccccccccc
Confidence 222334455799999999999999999531 0
Q ss_pred CCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeece
Q 006368 271 KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY 346 (648)
Q Consensus 271 ~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~ 346 (648)
..+++++|+|+...+.+.. ++. ..+..+| |.+. +++.+|+++.+||+++||+++++.+. +|+++++|||
T Consensus 322 ~~~v~~~w~~s~~~~~~~~-~~~~~~~~~~~~~~--p~~~-~~~g~d~~~~~fh~l~~~~~l~~~~~---~~~~v~~hg~ 394 (452)
T d1ilea3 322 VPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESF--PADF-IAEGIDQTRGWFNSLHQLGVMLFGSI---AFKNVICHGL 394 (452)
T ss_dssp CSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHS--SBSB-EEEEGGGGGTHHHHHHHHHHHHHSSC---SBSEEEEECC
T ss_pred cccccccccccccchhhhc-cCccchhhhcccCC--cchh-heecCceechhhHHHHHhHHHHcCCC---CCCeEEEeeE
Confidence 2478889999888777654 222 2344455 4452 24555555567999999999987654 5788999999
Q ss_pred e-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 347 L-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 347 l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
+ +.+|+|||||+||+|+|.++|+ +||+|+|||||++.+|+++|++||++.+.++++
T Consensus 395 iL~~~G~KMSKS~gn~I~~~dll~-~ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 395 ILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451 (452)
T ss_dssp EECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred EECCCCcccCCCCCCCcCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCcCHHHHhHHhc
Confidence 6 6999999999999999999998 799999999999989999999999999988753
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.1e-62 Score=532.20 Aligned_cols=336 Identities=18% Similarity=0.268 Sum_probs=279.9
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCH----------
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP---------- 87 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~---------- 87 (648)
..++++|+|++|||||||.||||||++ ++.+||++||+||+||+|+|++|+|+||+||+.+|++.|..+
T Consensus 44 ~~~~~~f~~~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~ 122 (450)
T d1ffya3 44 NKGNETFILHDGPPYANGNLHMGHALN-KILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFRE 122 (450)
T ss_dssp TTTSCBCCEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHH
T ss_pred cCCCCcEEEecCCCCCCCchhhhHHHH-HHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhh
Confidence 345678999999999999999999999 677999999999999999999999999999999999998764
Q ss_pred --HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 88 --KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 88 --~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
.+++..+.+.+++.+++||++.| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~--- 199 (450)
T d1ffya3 123 KCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE--- 199 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE---
T ss_pred hcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCccccccccc---
Confidence 44577888899999999999987 45689999999999999999999999999999999999999999876554
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
+|.|++|+++++.+.+++||+++..+.+.+.+.+...... +.....+..
T Consensus 200 ----------------------------~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 248 (450)
T d1ffya3 200 ----------------------------YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFK---VNWGKTRIY 248 (450)
T ss_dssp ----------------------------EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEES---SHHHHHHHH
T ss_pred ----------------------------ccccccccCCceeeccccceeccccccccchhhccccccc---ccccceeee
Confidence 4568899999999999999999999999999999886532 444455566
Q ss_pred HHHhcccccceeeeccCCCcccCCcCC----------------------------------------------------C
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------------------------K 271 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~----------------------------------------------------~ 271 (648)
.|+++ +.||||||++.||+|+|.+.. +
T Consensus 249 ~~~~~-~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (450)
T d1ffya3 249 NMVRD-RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKE 327 (450)
T ss_dssp HHHHH-CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEEC
T ss_pred ccccC-ccchheeeecccccCcceeecCCCCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceee
Confidence 67764 899999999999999996421 1
Q ss_pred CceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchh-HhHHHHHhhhcCCCcccCceEEeecee-ec
Q 006368 272 EKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFH-TVMFPSTLLGTGENWTLMKTISVTEYL-NY 349 (648)
Q Consensus 272 ~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH-~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~ 349 (648)
..++++|||+.+.+.+.. .+ ....+| |.| +|++|+||++|| ...++..+...|. .+++++++|||+ ..
T Consensus 328 ~dvld~wfds~~~~~~~~-~~--~~~~~~--P~d---~~~~G~Di~r~w~~~~~~~~~~~~~~--~Pfk~v~~hG~vld~ 397 (450)
T d1ffya3 328 TDIMDVWFDSGSSHRGVL-ET--RPELSF--PAD---MYLEGSDQYRGWFNSSITTSVATRGV--SPYKFLLSHGFVMDG 397 (450)
T ss_dssp CCEECHHHHHHTHHHHTT-TT--STTCCS--SBS---EEEEEGGGGTTHHHHHHHHHHHHHSS--CSBSEEEEECCEECT
T ss_pred eeeecccccccccccccc-cc--cccccC--CCc---ccccCcchhhHHHHHHHHHHHHhcCC--CCcceEEEcceEECC
Confidence 245667777665554432 11 122334 456 899999999753 4444444555554 378999999996 58
Q ss_pred CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 350 ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 350 ~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
+|+|||||+||+|+|.++++ +||+|+|||||++ ++.++|++||++.+.++
T Consensus 398 ~G~KMSKS~GN~I~p~dii~-~yGaDalR~~l~s-~~~~~D~~fs~~~l~~~ 447 (450)
T d1ffya3 398 EGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQT 447 (450)
T ss_dssp TSCCCCSSSSCCCCHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred CCCCCCCCCCCCcCHHHHHH-HhCcHHHHHHHHc-CCCCCCcCcCHHHHHHh
Confidence 99999999999999999999 7999999999996 56789999999998875
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-57 Score=482.07 Aligned_cols=342 Identities=26% Similarity=0.482 Sum_probs=297.8
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++|+||||+|||||+|||||+|+ ||.+|+++||+|++||+|+||+|+|+||+||+.+|+++|++|++++..+...|++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~-~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYT-TVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCcccccCHH-HHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHH
Confidence 578999999999999999999998 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
.++.++|.+|.|+|+..+.+...++.++.++.++|++|++.+.++||+.|++++.+..
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 138 (348)
T d2d5ba2 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE---------------------- 138 (348)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT----------------------
T ss_pred HHHhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceecccc----------------------
Confidence 9999999999999999999999999999999999999999999999999988887543
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceee---e
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT---R 257 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~Is---R 257 (648)
+.++.|..+|..++.....++|++++.+.+.+.++....+... ......+....+...++.|+.+. +
T Consensus 139 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~~~~~~~ 208 (348)
T d2d5ba2 139 ---------LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLI-RPEGYRNEVLAMLAEPIGDLSISRPKS 208 (348)
T ss_dssp ---------SBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSE-ESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ---------ccccccccCCCceEEecccccccchHhhhhhHHHhhhcccccc-ccccccccccccccccccccccccccc
Confidence 3345566778889999999999999999999999987765432 23344455566777777776554 4
Q ss_pred ccCCCcccCCcCCCCceeeeeecccchHHHhccccc-hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcc
Q 006368 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336 (648)
Q Consensus 258 ~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~ 336 (648)
+..||++.|.+ +++++|+||++.++|.+...... ..+..++. ..+|++|+|+.++|+..++++..+.+.+
T Consensus 209 ~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~d~~~~~~~~~~~~~~~~~~~-- 279 (348)
T d2d5ba2 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWP-----HAWHLIGKDILKPHAVFWPTMLKAAGIP-- 279 (348)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGG-----GEEEEEEGGGHHHHHTHHHHHHHHHTCC--
T ss_pred cCCCCcccccC--CcccccchhccchhhhhhhcCCchhhhccccc-----hheeeehhhccchhhhhhhhhccccccC--
Confidence 57899999988 68999999999999998753322 23444442 2489999999999999999988887754
Q ss_pred cCceEEeece-eecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHH
Q 006368 337 LMKTISVTEY-LNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (648)
Q Consensus 337 ~p~~~~~hg~-l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 405 (648)
+++.+++||+ |..+|+|||||+||+|++.|+++ .+|+|+|||||++..|+++|++||++.|++++|++
T Consensus 280 ~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~-~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n~~ 348 (348)
T d2d5ba2 280 MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEAD 348 (348)
T ss_dssp CCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHH
T ss_pred CCCEEEeCceEEcccCCCCcCCCCcccCHHHHHH-HCCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHcCC
Confidence 5678888865 56999999999999999999999 79999999999988899999999999999998875
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.9e-52 Score=457.71 Aligned_cols=341 Identities=21% Similarity=0.366 Sum_probs=270.9
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
..++++|+|++|||||||.||||||++ ++.+||++||+||+|++|+|++|+|+||+||+.+|++.+..|.++++++...
T Consensus 29 ~~~~~~~~i~~~pP~~nG~lHiGH~~~-~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~ 107 (494)
T d1h3na3 29 PGGRGKQYVLVMFPYPSGDLHMGHLKN-YTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQ 107 (494)
T ss_dssp CCTTCEEEEEECCCCSSSCCBHHHHHH-HHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccCCCCeEEEeCCCCCCCchhhhHHHH-HHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHH
Confidence 356778999999999999999999999 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc-ccCCCCccccCCCC
Q 006368 98 HKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESAR 174 (648)
Q Consensus 98 ~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~ 174 (648)
+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|.+|+ |.|
T Consensus 108 ~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~t~l~~~ev~~~~~----------- 176 (494)
T d1h3na3 108 AKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRC----------- 176 (494)
T ss_dssp HHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEE-----------
T ss_pred hHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCccceecchhcccCcc-----------
Confidence 9999999999887 58899999999999999999999999999999999999999999998874 221
Q ss_pred CccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccce
Q 006368 175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRC 254 (648)
Q Consensus 175 g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (648)
+..++.+++..++++|||+++.+.+.+..+.... .++..++.....|+.+ +.||+
T Consensus 177 --------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~-l~d~~ 231 (494)
T d1h3na3 177 --------------------WRHEDTPVEKRELEQWYLRITAYAERLLKDLEGL----NWPEKVKAMQRAWIGR-LRDWL 231 (494)
T ss_dssp --------------------SSCTTSBCEEEEEEEEEECGGGGHHHHHHTTTTC----BSCHHHHHHHHHHHCS-CCCEE
T ss_pred --------------------ccccCceEEeeccCchhhhhhccccccccccccc----cccccccccccccccc-ccccc
Confidence 2234678889999999999999999887776543 4677888888889865 99999
Q ss_pred eeeccCCCcccCCcC------------------------------------------------------CCCceeeeeec
Q 006368 255 ITRDLKWGVPVPLER------------------------------------------------------FKEKVFYVWFD 280 (648)
Q Consensus 255 IsR~~~WGi~vP~~~------------------------------------------------------~~~~v~yVWfD 280 (648)
|||.+.||.++|... .+..++.+||+
T Consensus 232 Isr~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~ 311 (494)
T d1h3na3 232 ISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFD 311 (494)
T ss_dssp CEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHH
T ss_pred cccccccccceEEEeeccceeecccccchhcccccccccccCCCcCCChhHhCcceeeeecccCCCceEEeceeccccee
Confidence 999999999998521 01256778888
Q ss_pred ccchHHHhcccc-------chHHHhhcCCCCCcceEEEEeccccchhHh--HHHHH-hhhcCC--CcccCceEEeece--
Q 006368 281 APIGYVSITSCY-------TNEWEQWWKNPENVELYQFMGKDNVPFHTV--MFPST-LLGTGE--NWTLMKTISVTEY-- 346 (648)
Q Consensus 281 a~~~yis~~~~~-------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i--~~pa~-l~a~g~--~~~~p~~~~~hg~-- 346 (648)
....+.+..... ...+..+|+ .+ ....|.++...+.+ -|... ....+. .-.+.++++.||+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vd---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~ 386 (494)
T d1h3na3 312 SSWYYLRYTDPHNDRLPFDPEKANAWMP--VD---QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVL 386 (494)
T ss_dssp TTSHHHHTTSTTCSSSSSCHHHHHHHCS--BS---EEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEE
T ss_pred ecchhhhhcccccccccccccccccccC--ce---ecccccceeeeeeecccchhhhhhcccccccchhcccccccCcEe
Confidence 777666543111 122333442 23 34556555433221 12222 122221 0112344554444
Q ss_pred ---------------------------------------------------ee-cCCccccccCCcccChhhhhhcCCCc
Q 006368 347 ---------------------------------------------------LN-YESGKFSKSKGIGVFGNDAKDTNIPV 374 (648)
Q Consensus 347 ---------------------------------------------------l~-~~G~KMSKS~gN~I~~~~~l~~~~~~ 374 (648)
+. -+|+|||||+||||+|.++++ +||+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~-~YGA 465 (494)
T d1h3na3 387 AWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK-EQGA 465 (494)
T ss_dssp EEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECCTTTTCCCBHHHHHH-HSCH
T ss_pred cCcccccccccccccccCCcceeeeeccccccchhhhhcccccccccCCccEEeCCceeCCCCCCCcCCHHHHHH-HhCH
Confidence 32 357899999999999999999 7999
Q ss_pred hhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 375 EVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 375 d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
|+||||||+.+|.++|++||++.+..+
T Consensus 466 DalRl~ll~~s~~g~di~~s~~~ieg~ 492 (494)
T d1h3na3 466 DIARITILFAAPPENEMVWTEEGVQGA 492 (494)
T ss_dssp HHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHHHHHHHhcCCcccCCCcChhcCeec
Confidence 999999999899999999999988764
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-46 Score=387.33 Aligned_cols=304 Identities=14% Similarity=0.085 Sum_probs=225.5
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-++|++++|+|+. ++.++||| .|||||+|||||+|+ +|.+|+++|++|+.|++|.|++|+||||++|...|++.|.
T Consensus 7 ~~~~~~~~f~~~~~~~~~~yv~--Gptv~g~~HIGH~R~-av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~ 83 (315)
T d1li5a2 7 TLTRQKEEFKPIHAGEVGMYVC--GITVYDLCHIGHGRT-FVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (315)
T ss_dssp TTTTEEEECCCSSTTEEEEEEC--CCBSSSCCBHHHHHH-HHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred CCCCceeeeecCCCCeEEEEec--CCcCCCCcccchhHH-HHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhh
Confidence 4689999999975 45678885 469999999999999 5779999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
+|+++++++...+.++++.++|.++.+.+++ .++...+...+++|..+|.+|.....++|+......
T Consensus 84 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 150 (315)
T d1li5a2 84 SFVAMVDRMIAEMHKDFDALNILRPDMEPRA-THHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP------------ 150 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBG-GGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCT------------
T ss_pred ccccccccchhhhhhhHHhcCCCCCcEEEec-chhhhhhhhHHHHhhccCceeccccceEEeeccccc------------
Confidence 9999999999999999999999997776655 367778888999999999999887777766432211
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (648)
.++..+..+...+. .|........ ...+. ++
T Consensus 151 -------~~~~~~~~~~~~~~-----------~~~~~~~~~~------------------~~~~~-------------~~ 181 (315)
T d1li5a2 151 -------TYGVLSRQDLDQLQ-----------AGARVDVVDD------------------KRNPM-------------DF 181 (315)
T ss_dssp -------TTTTTTTC---------------------------------------------CCSTT-------------CE
T ss_pred -------ccCccccccccccc-----------cCCccccccc------------------ccChh-------------hh
Confidence 01111000000000 0000000000 00000 00
Q ss_pred Hhcccccceee-eccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 246 LKEGLKVRCIT-RDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 246 l~~gl~d~~Is-R~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
+.....+.... +...||+++|.| ..+++|+|+|++.+++ + +++.|.|+.++|...+
T Consensus 182 ~~~K~~~~~~~~~~~~~g~~~~~~--~~~~~~~w~~~l~~~~------------------~---~~~~~~d~~~~~~~~~ 238 (315)
T d1li5a2 182 VLWKMSKEGEPSWPSPWGAGRPGW--HIECSAMNCKQLGNHF------------------D---IHGGGSDLMFPHHENE 238 (315)
T ss_dssp EEEEECCTTSCCBCCTTCSEEECS--SHHHHHHHHHHHCSSE------------------E---EEECBGGGTTTHHHHH
T ss_pred hccccCccCCceeccCCceecccc--cchhhhHHHHHcCCcc------------------c---cccccccccccccccc
Confidence 00000111112 346799999988 5789999999654333 2 6889999999999999
Q ss_pred HHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 325 pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
++++.+.... ..+..+++||||+++|+|||||+||||+|.|+++ .+|+|++||||++ .+.++|+|||++.+.++
T Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle-~~g~D~lRy~lls-~~~~s~ldFs~e~l~~a 312 (315)
T d1li5a2 239 IAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMS-GHYRSQLNYSEENLKQA 312 (315)
T ss_dssp HHHHHHHSSS-CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHT-TSCHHHHHHHHHS-SCTTSCEEECHHHHHHH
T ss_pred chhhhccccc-ccccEEEEEEEEecCCcEecCcCCCcccHHHHHH-hCCHHHHHHHHHc-CCCCCCCCcCHHHHHHH
Confidence 9888765432 2345556669999999999999999999999998 8999999999997 67789999999998876
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.96 E-value=2.3e-28 Score=237.97 Aligned_cols=171 Identities=33% Similarity=0.585 Sum_probs=151.8
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
+|+||||++|+++|+.+ +|+|.+|... ...+.|+++++.+..+.+++.++|++|++++|++.+|++++.+|+|+
T Consensus 1 vN~lGNl~~Rv~~~i~k----~~~g~vp~~~--~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi 74 (210)
T d1rqga1 1 VNNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYF 74 (210)
T ss_dssp TTTHHHHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH----HCCCcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999 8999998653 45678999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCC
Q 006368 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGH 566 (648)
Q Consensus 487 ~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 566 (648)
+..+||++.++++.++.+++++++++++.++++|+||||++|++||.+||++.... .+|..++.|+
T Consensus 75 ~~~~PW~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~~~--------------~~~~~~~~g~ 140 (210)
T d1rqga1 75 DHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR--------------WEFRELPAGH 140 (210)
T ss_dssp HTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCC--------------SSCCCCCTTC
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcccc--------------hhhhcCcccc
Confidence 99999999998888999999999999999999999999999999999999864321 1245677899
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHhccchhHH
Q 006368 567 KIGSPNPLFKELKDDEVEFFRSKFAGSQADR 597 (648)
Q Consensus 567 ~l~~~~~Lf~~i~~~~~~~~~~~~~~~~~~~ 597 (648)
+|+++++||+||+++++..+.++.......+
T Consensus 141 ~i~~~~~LF~rie~e~i~~~~~~~~~~~~~~ 171 (210)
T d1rqga1 141 KVRKPEILFKKVTDDQIIYFILNYMAKGNPE 171 (210)
T ss_dssp BCCCCCCSCCCCCHHHHHHHHHHTTTTTCHH
T ss_pred cCCCCccCcCCCCHHHHHHHHHHhhhccCcc
Confidence 9999999999999999988887666554433
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=1.2e-30 Score=268.13 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred EEEEeccccchhHhHHHHHhh---hcCCCcccCceEEeeceeecCC--ccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLL---GTGENWTLMKTISVTEYLNYES--GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~---a~g~~~~~p~~~~~hg~l~~~G--~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+|++|+|++.+|..+++++.+ ++|. +|..+++||||+++| .|||||+||+|+++|+++ .+++|++|||+|+
T Consensus 231 ~~~~g~d~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~-~~~~d~~Ry~~l~ 306 (317)
T d1irxa2 231 FEPAGKDHLVAGSSYDTGKEIIKEVYGK---EAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRFIYAR 306 (317)
T ss_dssp BCCEEHHHHSTTSHHHHHHHHHHHHHCC---CCCBCCEECCEEESCC---------CCCCHHHHHT-TSCHHHHHHHHHS
T ss_pred EEEecceecccchhhhHhhhhhhhhcCC---CCcEEEEEEEEEECCccccccCCCCccccHHHHHH-HCCHHHHHHHhcC
Confidence 799999999999988877643 3443 345678899999865 499999999999999998 7999999999998
Q ss_pred cCCCCCCcccc
Q 006368 384 NRPEVSDTLFT 394 (648)
Q Consensus 384 ~~~~~~d~~fs 394 (648)
..| .++++|+
T Consensus 307 ~~~-~~~i~FD 316 (317)
T d1irxa2 307 HRP-NKEIKID 316 (317)
T ss_dssp SCT-TSCEEEC
T ss_pred CCC-CCCcCCC
Confidence 777 5888886
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.2e-25 Score=206.16 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=133.1
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 411 GNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 411 ~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
-||++|+.+|+.| +|+|.+|... .|.++.+.+..+.+.+.++|++|++++|++.+|++++.+|+|+++.+
T Consensus 2 ~NL~~R~~~~i~k----~~~g~vp~~~------~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~~ 71 (162)
T d1pfva1 2 VNLASRNAGFINK----RFDGVLASEL------ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQA 71 (162)
T ss_dssp HHHHHHHHHHHHH----HSTTBCCSSC------SCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHH----hcCCcCCCCC------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999 8999998632 13468899999999999999999999999999999999999999999
Q ss_pred hhhhccCC--hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCcc
Q 006368 491 FWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKI 568 (648)
Q Consensus 491 pw~l~k~~--~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l 568 (648)
||++.+++ .+++.++++++++++|+++++|+||||.+|++|+++||.+ .+|.+. .....|++|
T Consensus 72 PWkl~k~~~~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~----~~~~~~-----------~~~~~g~~i 136 (162)
T d1pfva1 72 PWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI-----------QQPLLGHKV 136 (162)
T ss_dssp HHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC----CCTGGG-----------GSCCCSCBC
T ss_pred hhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC----CCHHHh-----------hcccCcCCC
Confidence 99998764 3578899999999999999999999999999999999975 344331 123359999
Q ss_pred CCCCCCCCCCChHHHHHHHHH
Q 006368 569 GSPNPLFKELKDDEVEFFRSK 589 (648)
Q Consensus 569 ~~~~~Lf~~i~~~~~~~~~~~ 589 (648)
+++++||+||++++++++.++
T Consensus 137 ~~~~pLF~rie~~~ie~~~e~ 157 (162)
T d1pfva1 137 NPFKALYNRIDMRQVEALVEA 157 (162)
T ss_dssp CCCSCSSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999988776533
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=2.5e-25 Score=204.77 Aligned_cols=151 Identities=21% Similarity=0.345 Sum_probs=129.4
Q ss_pred HHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 006368 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (648)
Q Consensus 406 l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~y 485 (648)
|+|++|||++|+++|+.+ +|+|.+|..... . .+..+..+.+.+.++|++|++++|++.++++++.+|+|
T Consensus 1 LaN~lGNlv~R~~~~~~k----~~~g~vP~~~~~--~-----~~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~y 69 (152)
T d2d5ba1 1 LADDLGNLVQRTRAMLFR----FAEGRIPEPVAG--E-----ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRY 69 (152)
T ss_dssp CCCCCHHHHHHHHHHHHH----HSTTBCCCCCCC--G-----GGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH----HCCCcCCCCcch--H-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999 899999865321 1 23455677889999999999999999999999999999
Q ss_pred HHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCC
Q 006368 486 LQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAG 565 (648)
Q Consensus 486 i~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 565 (648)
|++.+||++.|++++++.++++++++++|+++++|+||||++|++||++||++.+. .+.+ ...|+.+..|
T Consensus 70 i~~~~PW~l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~~--~~~~--------~~~~~~~~~~ 139 (152)
T d2d5ba1 70 INEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEV--RLEE--------AERWGLAEPR 139 (152)
T ss_dssp HHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSC--CGGG--------GGSSCCSCCC
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCccC--CHHH--------HHhcCCCCCC
Confidence 99999999988888899999999999999999999999999999999999987543 2322 2246777888
Q ss_pred CccCCCCCCCCC
Q 006368 566 HKIGSPNPLFKE 577 (648)
Q Consensus 566 ~~l~~~~~Lf~~ 577 (648)
+.+.++++||+|
T Consensus 140 ~~~~~~~~LF~r 151 (152)
T d2d5ba1 140 PIPEEAPVLFPK 151 (152)
T ss_dssp BCCSCCCCSSCC
T ss_pred CCCCCCCCCCCC
Confidence 888889999997
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=4.4e-19 Score=184.94 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=98.0
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH-----------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----------------- 82 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----------------- 82 (648)
.++++.|--..|+|+|++||||+|++ +.+|+++|+++..||+|.-...+.|.|..|-.-+..
T Consensus 6 ~~kki~vE~~SaNpt~plHvGH~R~a-iiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 84 (348)
T d1f7ua2 6 ENKKVIIEFSSPNIAKPFHAGHLRST-IIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 84 (348)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHH-HHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCEEEEEecCCCCCCCcchhhhhhH-HHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchh
Confidence 35679999999999999999999996 559999999999999999999999999887543321
Q ss_pred --------------cCC----------------------------CHHHHHHHHHHHHHHHHhhcCcccccccCCCchHH
Q 006368 83 --------------DNC----------------------------SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120 (648)
Q Consensus 83 --------------~g~----------------------------~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~ 120 (648)
.+. ..+.+++.....+++.+++|||.+|.|...++ .+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~-~~ 163 (348)
T d1f7ua2 85 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VS 163 (348)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CC
T ss_pred HHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-cc
Confidence 000 01234455566799999999999998766553 33
Q ss_pred HHHHHHHHHHHHHCCCEEEceEeeeec
Q 006368 121 TEACQAIFKKLLDNNWLIENTMQQPYC 147 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy~~~~~~~y~ 147 (648)
......+...|.++|.+|+..+..|++
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~ 190 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLID 190 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred ccchHHHHHHHHhhccccccCCccccc
Confidence 444557889999999999988887765
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.1e-17 Score=175.79 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHH---HHcCC------C-----
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA---MEDNC------S----- 86 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A---~~~g~------~----- 86 (648)
++++.|--..|+|+|++|+||+|++ +.+|+++|+++..||+|.-..-+.|.|+.|-..+ .+.+. .
T Consensus 6 ~~~i~vEf~SpN~~kplHvGHlRs~-iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~ 84 (370)
T d1iq0a2 6 PGVVLVEHTSVNPNKELHVGHLRNI-ALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFA 84 (370)
T ss_dssp EEEEEEECCCCCTTSCCBHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHH
T ss_pred CCeEEEEecCCCCCCCcchhhhhhH-HHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhh
Confidence 3579999999999999999999996 5599999999999999998888888888764333 11111 0
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCC
Q 006368 87 -------------------------------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN 135 (648)
Q Consensus 87 -------------------------------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G 135 (648)
..+.+..+...++..+..||+.||.|...++-.....+..++..|.++|
T Consensus 85 ~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l~~~~ 164 (370)
T d1iq0a2 85 GRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSP 164 (370)
T ss_dssp HHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTST
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeecccccccchhhhHhhhhhcc
Confidence 1122234444567788999999998876555445567888999999999
Q ss_pred CEEEce
Q 006368 136 WLIENT 141 (648)
Q Consensus 136 ~iy~~~ 141 (648)
.+|+..
T Consensus 165 ~~~~~~ 170 (370)
T d1iq0a2 165 HVFRPR 170 (370)
T ss_dssp TEECCS
T ss_pred ceeecc
Confidence 998654
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.6e-11 Score=124.49 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
+||==.|.|||.+|||||+++ +..+.+|| . ++-.|+.=+||.+.+- ....+.+.+.+++++
T Consensus 2 vvtRfaPsPtG~lHiG~~rta-l~n~~~Ak---~--~~G~~iLRidDtD~~R-------------~~~~~~~~I~~dL~w 62 (305)
T d1j09a2 2 VVTRIAPSPTGDPHVGTAYIA-LFNYAWAR---R--NGGRFIVRIEDTDRAR-------------YVPGAEERILAALKW 62 (305)
T ss_dssp CEEEECCCCSSSCBHHHHHHH-HHHHHHHH---H--TTCEEEECBCCCCTTS-------------CCTTHHHHHHHHHHH
T ss_pred eEEecCCCCCCcccHHHHHHH-HHHHHHHH---H--cCCEEEEEeCcCCCcc-------------CchHHHHHHHHHHHH
Confidence 455567899999999999985 66999988 2 2335777788887431 112456778899999
Q ss_pred cCcccccccC-------CCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGR-------TSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~r-------T~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.-.. ....++....+++.++|.++|.+|.
T Consensus 63 Lgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~ 104 (305)
T d1j09a2 63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (305)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred HhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeee
Confidence 9999985211 1233788889999999999999985
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.26 E-value=1.2e-12 Score=84.25 Aligned_cols=35 Identities=51% Similarity=1.165 Sum_probs=33.9
Q ss_pred ccccCCCCccccCCCCCccccccCCCCCccccCCCcC
Q 006368 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195 (648)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~ 195 (648)
|+|+||. |++++|+||+||.||+.++|.||++|+|
T Consensus 1 V~G~CP~--C~~~~a~GDqCe~CG~~~~p~eLinP~C 35 (35)
T d1rqga3 1 VIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRC 35 (35)
T ss_dssp CCSBCSS--SCCSCCCTTTCSSSCCCCCTTSSBSCBC
T ss_pred CeEECCC--CCCCcccCcchhhcCCccCHHHhcCCCC
Confidence 6899999 9999999999999999999999999987
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=1.1e-10 Score=108.74 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=96.2
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYG--SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEG 482 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~--~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~ 482 (648)
+++|+|.++.+....... .++ ...|. .....+|++++.++..+.+.+.++|++|++++|+..+.+++ ..+
T Consensus 2 ~~klWN~~rF~~~~~~~~---~~~~~~~~~~---~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~ 75 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLD---RPDLKNPPPP---EKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLS 75 (180)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCCTTSCCCS---TTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHhcccc---CCCccCCCCh---hhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhh
Confidence 578999988876543210 122 12221 34567899999999999999999999999999999999986 358
Q ss_pred HHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 483 NAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 483 N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
+.|++..++--....+......+..++.++++.+..+|+||||+++++||+.|+..
T Consensus 76 ~~Y~e~~K~~l~~~~~~~~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~ 131 (180)
T d1ilea1 76 QWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 131 (180)
T ss_dssp TTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred HHHHHhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888743333333334455677788999999999999999999999999754
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3.3e-12 Score=82.04 Aligned_cols=35 Identities=46% Similarity=0.962 Sum_probs=32.9
Q ss_pred ccccCCCCccccCCCCCccccccCCCCCccccCCCcC
Q 006368 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195 (648)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~ 195 (648)
|+|+||. |++++|+||+||.||+.++|.||++|++
T Consensus 1 V~G~CP~--C~~~~a~GDqCe~CG~~~~p~eLinP~S 35 (35)
T d1pfva3 1 VKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKS 35 (35)
T ss_dssp EEEECTT--TCCSSEETTBCTTTCCBCCGGGSEEEEE
T ss_pred CeeECCC--CCCcccccccHHHcCCcCCHHHhcCCCC
Confidence 6799999 9999999999999999999999999863
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=7.6e-10 Score=97.00 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=81.3
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
+++++|++......... .....+ .......|++++..+++++.++.++|++|+++.|+..+++|++..++|.
T Consensus 2 lnklw~~v~~~~~~~~~-----~~~~~~---~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~n~l~~~~ 73 (128)
T d1h3na1 2 LNRIYRRVAEDREALLE-----TSGVFQ---AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYR 73 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-----CCCCCC---GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccc-----cccccC---cccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcccchhh
Confidence 46677777665554443 111111 1234567999999999999999999999999999999999998877776
Q ss_pred HhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 487 ~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..... . .+..++++.+..||+||||++|+++|+.||-
T Consensus 74 ~~~~~-------~-------~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~ 110 (128)
T d1h3na1 74 KDRPV-------T-------PVYRTAIRYYLQMLFPFAPHLAEELWHWFWP 110 (128)
T ss_dssp HHSCS-------C-------HHHHHHHHHHHHHHTTTSHHHHHHHHTTTCS
T ss_pred hhhhh-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54321 1 1123467788899999999999999999984
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.02 E-value=3.4e-09 Score=105.35 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=97.6
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EGNAY 485 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~--~~N~y 485 (648)
.+|.|.++++++.+.. |+......+..+...+|++++..++.+.+.+.++|++|+|++|++.+++++. .+|.|
T Consensus 2 RKirNt~RFlL~nl~~-----f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y 76 (273)
T d1ffya1 2 RKIRNTLRFMLGNIND-----FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 76 (273)
T ss_dssp HHHHHHHHHHHHTSTT-----CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred chHHHHHHHHHHhccC-----CCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHH
Confidence 3688999998887654 4311111111346678999999999999999999999999999999999984 58999
Q ss_pred HHhhhhhhhcc-CChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 486 LQESQFWKLYK-EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 486 i~~~~pw~l~k-~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
++..++--... .+.....++..++.+++..+..+|+||||++++++|+.+.
T Consensus 77 ~~~~Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~ 128 (273)
T d1ffya1 77 LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP 128 (273)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTST
T ss_pred HhhccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998743322 2334556677888899999999999999999999998775
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.00 E-value=9.2e-10 Score=105.75 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=90.5
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNA 484 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~ 484 (648)
+|+++|..+.+.....+ ++ +.. ......|++++..++++...+.++|++|+|+.|+..+.+++ ..++.
T Consensus 1 aNKlwNa~rF~~~~~~~-----~~---~~~--~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~ 70 (218)
T d1ivsa2 1 ANKLYNAARFVLLSREG-----FQ---AKE--DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDW 70 (218)
T ss_dssp HHHHHHHHHHHHHHSSS-----CC---CCB--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHhCcCC-----CC---CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHH
Confidence 58899998887654332 32 211 12346799999999999999999999999999999999997 45999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|++..++.... +... ...++.++++.+..+|+||||++++++|+.|+.
T Consensus 71 Y~e~~k~~~~~--~~~~---~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~ 118 (218)
T d1ivsa2 71 YLEAAKPALKA--GNAH---TLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 118 (218)
T ss_dssp HHHHHHHHHHT--TBHH---HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHhhhccc--cccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998875432 2222 344566788899999999999999999999964
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.8e-07 Score=95.01 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==-|.|+|.+||||||++ |..-.+||- ++-.|+.=+||.+.. .....+.+.+.+++++
T Consensus 20 v~tRFAPSPTG~LHiG~~rta-l~n~l~Ak~-----~~G~fiLRIEDtD~~-------------R~~~~~~~~I~~dL~W 80 (331)
T d1gtra2 20 VHTRFPPEPNGYLHIGHAKSI-CLNFGIAQD-----YKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEW 80 (331)
T ss_dssp CEEEECCCSSSCCBHHHHHHH-HHHHHHHHH-----TTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCcCCCC-------------cccchHHHHHHHHHHH
Confidence 444455789999999999995 657777774 344555566666542 2223456778899999
Q ss_pred cCcccccc-cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNF-GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f-~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.- ++-+ ++.+.-++...+|.++|.+|.
T Consensus 81 LGl~wD~~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 81 LGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp TTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred Hhccccccceecc--hHHHHHHHHHHhhhhcCCccc
Confidence 99999833 2233 566778888999999999983
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=2.6e-07 Score=91.82 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=68.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
|||==.|.|||.+||||||++ |..-.+||- ++-.|+.=+||.+.+- ....+.+.+.+++++
T Consensus 3 ~~tRFAPsPtG~lHiG~~rta-l~n~~~Ak~-----~~G~~iLRieDtD~~R-------------~~~~~~~~I~~dL~w 63 (286)
T d1nzja_ 3 YIGRFAPSPSGELHFGSLIAA-LGSYLQARA-----RQGRWLVRIEDIDPPR-------------EVPGAAETILRQLEH 63 (286)
T ss_dssp CEEEECCCTTSCCCHHHHHHH-HHHHHHHHH-----TTCEEEEEECCSCGGG-------------SCTTHHHHHHHHHHH
T ss_pred ceEeeCcCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCCCCCCc-------------CCHHHHHHHHHHHHH
Confidence 566667899999999999985 657777772 2346666777776541 112356778899999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|. -++.+ ++.+.-++++++|.++|.+|.
T Consensus 64 lgl~~d~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 97 (286)
T d1nzja_ 64 YGLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 97 (286)
T ss_dssp TTCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccccccchhH--HHHHHHHHHHHHHHHcCCccc
Confidence 9999985 33333 556677889999999999984
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.44 E-value=0.00016 Score=71.92 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecC--CcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g--~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++.++.--...++||||+.. ++ .-|+++..|+.+.++.| |...|+|--...++.-.+ .+-++.+.+.++.
T Consensus 31 ~~~~Y~G~DPTa~sLHlGhlv~-l~----~l~~~q~~Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~-~~~i~~n~~~~~~ 104 (323)
T d1jila_ 31 QVTLYCGADPTADSLHIGHLLP-FL----TLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQT-EEQVDKNIEGISK 104 (323)
T ss_dssp CCEEEEEECCSSSSCBHHHHHH-HH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCC-HHHHHHHHHHHHH
T ss_pred CcEEEEcccCCCccccHHHHHH-HH----HHHHHHHhCCceEEeehhhhhhccCCCccchhhhhhh-HHHHHHHHhhhhh
Confidence 3344455422334499999985 43 56788899999988776 677888754433333333 3444444444444
Q ss_pred HHh
Q 006368 101 VYK 103 (648)
Q Consensus 101 ~~~ 103 (648)
.+.
T Consensus 105 ~~~ 107 (323)
T d1jila_ 105 QMH 107 (323)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.27 E-value=0.00077 Score=66.70 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=25.3
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc-cccccCCcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG-KFSKSKGIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~-KMSKS~gN~I~~~~ 366 (648)
+.++|.|+..++.. +..+- +.+...+.|-.|. ++|+ |||||.||.|++.|
T Consensus 166 ~~~~G~DQ~~~~~l-------~rdl~-~~~~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 166 VAVGGMEQRKIHML-------ARELL-PKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp EEEEEGGGHHHHHH-------HHHHS-SSCCEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred eeccchhhHHHHHH-------hhhcc-cccceecccccccCcccccccccccccccccCC
Confidence 78999999665542 11110 1223444455664 7895 99999999997754
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.0073 Score=50.86 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=62.2
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
..++.+.+.|+.++++|..+...+...+.......++.++.|+..+....+.+.++.++++++..+..+.+|++.+|+|+
T Consensus 3 gpYiqYa~aRi~SIlrk~~~~~~~~~~~~~~~~l~~~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY 82 (124)
T d1f7ua1 3 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCY 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999987321100000000101223467888999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 006368 487 QESQ 490 (648)
Q Consensus 487 ~~~~ 490 (648)
+..+
T Consensus 83 ~~~~ 86 (124)
T d1f7ua1 83 DVLW 86 (124)
T ss_dssp HHCC
T ss_pred Hhcc
Confidence 8865
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.024 Score=47.69 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 407 ~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
..++.+.+.|+.+++++... ...++. ...++.++.|+..+....+.+.++.++++++.....+.+|++.+|.|+
T Consensus 4 gpYiqYa~AR~~SIl~k~~~----~~~~~~--~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY 77 (126)
T d1iq0a1 4 GPYVQYAHARAHSILRKAGE----WGAPDL--SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYY 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----CCCCCG--GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc----cCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45788899999999998321 111111 223456789999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 006368 487 QESQ 490 (648)
Q Consensus 487 ~~~~ 490 (648)
+..+
T Consensus 78 ~~~~ 81 (126)
T d1iq0a1 78 NARE 81 (126)
T ss_dssp HCEE
T ss_pred Hhcc
Confidence 8655
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.01 Score=46.49 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=30.1
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 455 YVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 455 ~~~~v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
..+++.++| |+|+++.|+..+.++++.+|++++.
T Consensus 23 ~~~~F~~Am~DDlNTp~Ala~lfel~k~~N~~~~~ 57 (87)
T d1li5a1 23 FEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 57 (87)
T ss_dssp HHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhcC
Confidence 356788999 8999999999999999999998765
|
| >d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Myf domain domain: Structure-specific tRNA-binding protein TRBP111 species: Aquifex aeolicus [TaxId: 63363]
Probab=94.29 E-value=0.0083 Score=49.00 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEeccccccC
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCFN 647 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~ 647 (648)
+.++.++.+++++|+||+.+++|+|+ +.|||.|.+..+|+
T Consensus 14 rVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~ 53 (107)
T d1pyba_ 14 RVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYT 53 (107)
T ss_dssp EEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSC
T ss_pred EEEEEEEEEeccccCceEEEEeecCC-cccceEEeeecccC
Confidence 34556788899999999999999986 57999998877764
|
| >d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Myf domain domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.68 E-value=0.028 Score=45.67 Aligned_cols=36 Identities=6% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecccc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSL 644 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~ 644 (648)
.++.++.+++++|+||+.+++|+|+ +.|||+|+-..
T Consensus 15 VG~I~~~~~hp~adkL~~~~Vd~G~-~~~~Iv~G~~~ 50 (107)
T d1mkha_ 15 VGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKK 50 (107)
T ss_dssp EEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTT
T ss_pred EEEEEEEEecCCCCceEEEEEEcCC-eEEEEEEEeee
Confidence 4556788899999999999999976 78999886543
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.31 E-value=0.041 Score=54.65 Aligned_cols=65 Identities=18% Similarity=0.057 Sum_probs=40.3
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCc-cccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+++.. =--+....+.. . ...+++-+| .++|. |||||.||.|+..| +++.++=++++
T Consensus 186 ~vp~G~DQ~~~i~l-~Rdla~r~~~~--~-~~~~~~p~L~gldG~~KMSKS~~naI~L~d------sp~~i~~Ki~~ 252 (343)
T d1h3fa1 186 VEMGGTDQRFNLLV-GREVQRAYGQS--P-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 252 (343)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHTTCC--C-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred ccccccchHHHHHH-HHHHHhhcCcc--c-cceeeccccccccccchhhcccccceeeec------hhHHHHHHHhc
Confidence 78999999654432 11122223332 2 344445555 48885 99999999998764 46777666665
|
| >d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Myf domain domain: Structure-specific tRNA-binding protein TRBP111 species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.029 Score=45.89 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEecccccc
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCF 646 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~ 646 (648)
++++.++.+++++|+||+.+++|+|+ +.|||.|++..++
T Consensus 15 rVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~ 53 (111)
T d1pxfa_ 15 RVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYY 53 (111)
T ss_dssp EEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTS
T ss_pred EEEEEEEEEEcCCCCceEEEEEEeCC-cceeEEEEccccc
Confidence 34566788999999999999999975 7899999876655
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.19 Score=50.38 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
.+++++|.|++ -|+|. +||||... ... .|++.+. |.+|++. ..|.|- + .....++.+. .++...
T Consensus 71 ~gkp~~vytG~-~PSg~~lHlGh~v~----~~~-~~~~q~~~~~~v~i~-iaD~~a--~----~~~~~~~~e~-~~~~~e 136 (386)
T d1r6ta2 71 NKKPFYLYTGR-GPSSEAMHVGHLIP----FIF-TKWLQDVFNVPLVIQ-MTDDEK--Y----LWKDLTLDQA-YGDAVE 136 (386)
T ss_dssp TTCCEEEEEEE-CCCTTCCBGGGHHH----HHH-HHHHHHHHTCCEEEE-ECHHHH--H----HHSSCCHHHH-HHHHHH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHH----HHH-HHHHHHhcccceEEE-ecchHh--h----hcccCCHHHH-HHHHHH
Confidence 34678888887 78896 79999764 333 4666655 7777655 445441 1 1224565544 445556
Q ss_pred HHHHHhhcCcccc
Q 006368 98 HKDVYKWFDISFD 110 (648)
Q Consensus 98 ~~~~~~~l~i~~D 110 (648)
....+-++|+.++
T Consensus 137 ~~~~~lA~GlDp~ 149 (386)
T d1r6ta2 137 NAKDIIACGFDIN 149 (386)
T ss_dssp HHHHHHTTCCCTT
T ss_pred HHHHHHHhCCCcc
Confidence 6666777888775
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.22 Score=49.02 Aligned_cols=65 Identities=20% Similarity=0.062 Sum_probs=34.7
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCcccccc-CCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKS-KGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS-~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..++.. =--+....+. .+...+++-.+. ++|.||||| .+|.|.+.| +++.++-=+.+
T Consensus 178 ~v~~G~DQ~~~i~l-~rd~a~r~~~---~~~~~l~~pll~~l~g~kmsks~~~~~I~l~D------~~~~I~kKI~~ 244 (339)
T d1n3la_ 178 AQFGGIDQRKIFTF-AEKYLPALGY---SKRVHLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 244 (339)
T ss_dssp EEEEEGGGHHHHHH-HHHHGGGGTC---CCCEEEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred ccccchhHHHHHHH-HHHHHhhhcc---CcceeeeeccccccccccccccchhhcccccC------CHHHHHHHHhh
Confidence 68899999765432 1112222332 233455666664 899999987 599987764 24666665554
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=89.03 E-value=0.087 Score=51.34 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=48.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecC--CcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g--~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++.++.--...++||||+.. ++ .-|+++..|+.|+.+.| |.-+|+|--...++.-.+ .+-++.+.+.+++
T Consensus 30 ~~~~Y~G~DPTa~sLHlGhlv~-l~----~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~eR~~l~-~e~i~~n~~~~~~ 103 (319)
T d2ts1a_ 30 RVTLYCGFDPTADSLHIGHLAT-IL----TMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNA-KETVEAWSARIKE 103 (319)
T ss_dssp CCEEEEEECCSSSSCBGGGHHH-HH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCC-HHHHHHHHHHHHH
T ss_pred CceEEEeecCCCCcchHHHHHH-HH----HHHHHHHcCCceeEEeeehhhccCCCcccchhhhcCC-HHHHHHHHHHHHH
Confidence 3445555533455699999985 44 67888889999988876 445788765544333333 5666666666666
Q ss_pred HHhh
Q 006368 101 VYKW 104 (648)
Q Consensus 101 ~~~~ 104 (648)
.+.+
T Consensus 104 q~~~ 107 (319)
T d2ts1a_ 104 QLGR 107 (319)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5544
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.38 E-value=0.51 Score=45.93 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=47.1
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D 110 (648)
-|+|.+||||..+ .+ ..+..++ |+++++.. .|.|..- ....+.++. ++...+...+-++|+.++
T Consensus 9 ~PSG~~HlG~~~g-~i-----~~~~~lq~~~~~~i~i-AD~halt-------~~~~~~~l~-~~~~~~~~~~lA~G~dp~ 73 (326)
T d1i6la_ 9 QPSGVITIGNYIG-AL-----RQFVELQHEYNCYFCI-VDQHAIT-------VWQDPHELR-QNIRRLAALYLAVGIDPT 73 (326)
T ss_dssp CCCSCCBHHHHHH-TH-----HHHHHHTTTSEEEEEE-CHHHHTT-------SCCCHHHHH-HHHHHHHHHHHHTTCCTT
T ss_pred CCCCccHHHHHHH-HH-----HHHHHHhCCCCEEEEe-ehHHhhc-------cCCCHHHHH-HHHHHHHHHhhhhhcccc
Confidence 4679999999765 23 3444444 89986544 4766421 223554443 345667788899999986
Q ss_pred ---cccCCCchHHHH
Q 006368 111 ---NFGRTSTPQQTE 122 (648)
Q Consensus 111 ---~f~rT~~~~~~~ 122 (648)
.|..+.-++|..
T Consensus 74 k~~i~~qS~~~~~~e 88 (326)
T d1i6la_ 74 QATLFIQSEVPAHAQ 88 (326)
T ss_dssp TSEEEEGGGCTHHHH
T ss_pred ceEEEeecccchHHH
Confidence 345555556544
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=84.90 E-value=0.4 Score=46.39 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=39.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll 382 (648)
++++|.|+-+-+..--..+....|. .+...+..-.|+ .+|+|||||.||.||..+- .-+|..+.=|++
T Consensus 188 ~qiGGsDQ~gNi~~G~dli~~~~~~---~~~~~lT~PLL~~~~G~K~~ks~~n~i~l~~~---~tsp~~~yq~~~ 256 (319)
T d2ts1a_ 188 LQIGGSDQWGNITAGLELIRKTKGE---ARAFGLTIPLVTKADGTKFGKTESGTIWLDKE---KTSPYEFYQFWI 256 (319)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHC-----CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT---TSCHHHHHHHHH
T ss_pred hhhccchhhhHHHHHHHHHHHhccc---ccceEeecccccccccceeeecCCCCcccccc---cCCHHHHHHHhc
Confidence 8999999976554322222222231 122334444554 7899999999999998753 223444444444
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=84.81 E-value=0.25 Score=48.70 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=29.8
Q ss_pred CcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 22 RNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 22 ~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
++++|.+++ =|+| ++||||..+ ++ ..|++...|++++++.|
T Consensus 32 ~~~~vY~G~-~PTg~sLHlGh~v~-~~----~~~~lq~~g~~~~~~ia 73 (343)
T d1h3fa1 32 RPLTVKLGA-DPTRPDLHLGHAVV-LR----KMRQFQELGHKVVLIIG 73 (343)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHHH-HH----HHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEee-cCCCCcccHHHHHH-HH----HHHHHHHCCCceEEEEe
Confidence 456666766 6778 499999775 33 36667778999988765
|