Citrus Sinensis ID: 006717
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SW95 | 638 | Asparagine--tRNA ligase, | yes | no | 0.962 | 0.956 | 0.553 | 0.0 | |
| Q9SW96 | 572 | Asparagine--tRNA ligase, | no | no | 0.768 | 0.851 | 0.497 | 1e-148 | |
| Q9SSK1 | 571 | Asparagine--tRNA ligase, | no | no | 0.821 | 0.912 | 0.459 | 1e-142 | |
| Q73P19 | 473 | Asparagine--tRNA ligase O | yes | no | 0.675 | 0.904 | 0.417 | 1e-107 | |
| P52276 | 462 | Asparagine--tRNA ligase O | N/A | no | 0.659 | 0.904 | 0.408 | 1e-104 | |
| B8F3Y5 | 467 | Asparagine--tRNA ligase O | yes | no | 0.716 | 0.972 | 0.384 | 1e-100 | |
| O48593 | 567 | Asparagine--tRNA ligase, | no | no | 0.686 | 0.767 | 0.389 | 1e-100 | |
| B0BNV4 | 467 | Asparagine--tRNA ligase O | yes | no | 0.716 | 0.972 | 0.377 | 1e-98 | |
| Q633N6 | 463 | Asparagine--tRNA ligase O | yes | no | 0.664 | 0.909 | 0.393 | 2e-98 | |
| Q81L32 | 463 | Asparagine--tRNA ligase O | yes | no | 0.664 | 0.909 | 0.393 | 2e-98 |
| >sp|Q9SW95|SYNC2_ARATH Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/627 (55%), Positives = 449/627 (71%), Gaps = 17/627 (2%)
Query: 17 PVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDA 76
P+TL+ +YS RV LKT+L+ D G GL +RVVIGGWVK+++ VKK PPP A +
Sbjct: 20 PITLS-KYSKRVELKTLLDRSDRGAGLAGKRVVIGGWVKSARAVKKNSPPPPLPVVAAPS 78
Query: 77 AAKSSKEKEKEKDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLEALVPK--PP 134
+ + ++ C EI+QS++ F+ VL G P+ +K E K PP
Sbjct: 79 PSSGGDQAHTTANIRCTEIIQSKMNIFKRFFDVLSGGG---KTYPIFDKTELAGQKAVPP 135
Query: 135 PPSTVFLQVSDGSCVASLQVVVESTL--VSPSKIRPIGTCLMVEGVLKQP-SVQGKHAVE 191
P + +SDGS ++SLQVVV+S L V +++ +GTC++ EGVL+ P + KH +E
Sbjct: 136 PEYVFYFLISDGSSISSLQVVVDSALSTVPATQLMALGTCIVAEGVLRLPLAASAKHVIE 195
Query: 192 LKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFF 251
L+ EK+LH+GTVD +KYPLS+K+LP+ MLRD +HFRPRTTTV SV R+ S+LT A+HTF
Sbjct: 196 LEAEKLLHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTFL 255
Query: 252 QNHGFLYVQVPVITTTDSEGFSEKFQVTTLF----DKREKEGPKTAKDIEGVNLDILKAS 307
Q HGF YVQVPVITTT GF E F+VTTL DK EK+ P KD G ++D +KA
Sbjct: 256 QYHGFQYVQVPVITTT--TGFGEMFRVTTLLGKTDDKEEKKPPVQEKD--GFSIDTVKAV 311
Query: 308 IKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSED 367
IKEK+ ++ LKRS+SNRE ++AAV DL+KTN+L S +E + K VK +K++FS+D
Sbjct: 312 IKEKTRLIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTGTLVKPEKLDFSKD 371
Query: 368 FFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLE 427
FF R TYLT SGR HLESYA ALG VY+FGPRF A+K ++++H AE VETE+AF++L+
Sbjct: 372 FFGRDTYLTASGRFHLESYASALGKVYTFGPRFIADKIDNARHLAEKWNVETEMAFAELD 431
Query: 428 DAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL 487
DAM CAD+YFKFLCK++LE+ +D++F+SKR+D T RL++ SSS + +YTE + L
Sbjct: 432 DAMDCADEYFKFLCKYVLENRDEDMKFISKRVDKTITTRLEATASSSLLRFSYTEVISLL 491
Query: 488 EKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAA 547
+K T FETK EWGVALT EHLSYL DEIYK PVIV+ YPKA+K FYVRLNDD TVAA
Sbjct: 492 QKATTTKFETKPEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFYVRLNDDKKTVAA 551
Query: 548 FDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFD 607
FD+VVPK G VITGSQNEER ++L+ RI E G RE++EWYLDLRRHGTVKHSG S +
Sbjct: 552 FDLVVPKVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRHGTVKHSGISLSME 611
Query: 608 LMVLFTTGLTDVRDAIPFPRSLGKAYN 634
M+L+ TGL D++DAIPFPRS GKA N
Sbjct: 612 QMLLYATGLPDIKDAIPFPRSWGKANN 638
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SSK1|SYNC3_ARATH Asparagine--tRNA ligase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q73P19|SYN_TREDE Asparagine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=asnS PE=3 SV=1 | Back alignment and function description |
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| >sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2 | Back alignment and function description |
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| >sp|B8F3Y5|SYN_HAEPS Asparagine--tRNA ligase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=asnS PE=3 SV=1 | Back alignment and function description |
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| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function description |
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| >sp|B0BNV4|SYN_ACTPJ Asparagine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=asnS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q633N6|SYN_BACCZ Asparagine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=asnS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q81L32|SYN_BACAN Asparagine--tRNA ligase OS=Bacillus anthracis GN=asnS PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| 224069900 | 626 | predicted protein [Populus trichocarpa] | 0.963 | 0.976 | 0.658 | 0.0 | |
| 147845769 | 597 | hypothetical protein VITISV_011129 [Viti | 0.932 | 0.989 | 0.666 | 0.0 | |
| 255584663 | 657 | aspartyl-tRNA synthetase, putative [Rici | 0.979 | 0.945 | 0.625 | 0.0 | |
| 449463218 | 613 | PREDICTED: asparagine--tRNA ligase, cyto | 0.963 | 0.996 | 0.608 | 0.0 | |
| 357513179 | 704 | Asparaginyl-tRNA synthetase [Medicago tr | 0.944 | 0.850 | 0.610 | 0.0 | |
| 449507596 | 613 | PREDICTED: asparagine--tRNA ligase, cyto | 0.963 | 0.996 | 0.605 | 0.0 | |
| 356560689 | 620 | PREDICTED: asparaginyl-tRNA synthetase, | 0.941 | 0.962 | 0.619 | 0.0 | |
| 356503077 | 635 | PREDICTED: asparaginyl-tRNA synthetase, | 0.946 | 0.944 | 0.605 | 0.0 | |
| 297833532 | 637 | asparaginyl-tRNA synthetase 2 [Arabidops | 0.965 | 0.960 | 0.560 | 0.0 | |
| 15231463 | 638 | asparaginyl-tRNA synthetase, cytoplasmic | 0.962 | 0.956 | 0.553 | 0.0 |
| >gi|224069900|ref|XP_002303078.1| predicted protein [Populus trichocarpa] gi|222844804|gb|EEE82351.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/632 (65%), Positives = 507/632 (80%), Gaps = 21/632 (3%)
Query: 3 ASQEEIALTTTTATPVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKK 62
+SQE + TTT++ P + +YSNRV+LKTILE D V+ERVV+GGWVKTSKEV K
Sbjct: 16 SSQEPV--TTTSSNPSS---KYSNRVVLKTILEPSDRWKEFVDERVVVGGWVKTSKEVNK 70
Query: 63 EPMPPPPADFAGDAAAKSSKEKEKEKDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPL 122
EP P P A +A S K DV CVEI QSRIP FR+I ++ GG ++ P+
Sbjct: 71 EPAVPEPQQQATEAPNVSPGHK----DVRCVEIFQSRIPIFRSIAKIFGGGG---SSHPV 123
Query: 123 REKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182
REK E +P+PP PS +L VSDGS VASLQVVV+S++ S++ PIGTC++VEGVLK+P
Sbjct: 124 REKPEPAIPEPPRPSVAYLLVSDGSSVASLQVVVDSSIAPLSQLLPIGTCILVEGVLKEP 183
Query: 183 SVQGKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSS 242
S+QGKH++ELKVE+ILHIG V+ D+YPLS+KRLP++ LRD +HFRPRTTTVASV RI S+
Sbjct: 184 SMQGKHSIELKVEQILHIGKVEQDRYPLSKKRLPLEALRDCSHFRPRTTTVASVTRISSA 243
Query: 243 LTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLD 302
LT AT TFF + GFLYVQVP+ITTTD EGFSEKFQVTT+ K K+ D GV+L+
Sbjct: 244 LTFATQTFFHDKGFLYVQVPIITTTDGEGFSEKFQVTTVLGKDGKQN-----DTGGVSLE 298
Query: 303 ILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKV 362
++KA++ +KSN VEELKRSESNREAL +A+QDLRKTN+L S LE+++KL PS+K DK
Sbjct: 299 VVKAAVIQKSNLVEELKRSESNREALASAIQDLRKTNQLASQLEAKEKLKSGPSMKADKP 358
Query: 363 NFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIA 422
+F DFFS+QTYLTVSG LHLESYACA+GNV+SFGPRFRA++KES+K +EM MVE ++A
Sbjct: 359 SFYGDFFSQQTYLTVSGLLHLESYACAMGNVFSFGPRFRADRKESAKRISEMWMVEVQMA 418
Query: 423 FSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTE 482
FSQLEDAM CAD+YFKFLCKWIL++CS+D++FVSKRID + RL+S+ISSS EKI+Y E
Sbjct: 419 FSQLEDAMNCADEYFKFLCKWILKNCSEDMKFVSKRIDKSSSYRLESMISSSIEKISYME 478
Query: 483 AVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDG 542
A+K KV K FE EWG+ALT EHLSYLA+++Y++PVI+YNYPK +KPFYVRLNDDG
Sbjct: 479 ALK---KVAVK-FELNQEWGIALTPEHLSYLAEDVYRKPVIIYNYPKELKPFYVRLNDDG 534
Query: 543 NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGF 602
T AAFDMVVPK GT+ITGSQ+EERID+LN I+EL LPREQYEWY+DLRRHGTV+HSGF
Sbjct: 535 KTAAAFDMVVPKAGTIITGSQSEERIDILNKTIEELRLPREQYEWYMDLRRHGTVEHSGF 594
Query: 603 SFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634
S GFDLMVLFTTGL DVRD IPFPRS GKA N
Sbjct: 595 SLGFDLMVLFTTGLPDVRDVIPFPRSRGKANN 626
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147845769|emb|CAN82202.1| hypothetical protein VITISV_011129 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255584663|ref|XP_002533054.1| aspartyl-tRNA synthetase, putative [Ricinus communis] gi|223527152|gb|EEF29324.1| aspartyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449463218|ref|XP_004149331.1| PREDICTED: asparagine--tRNA ligase, cytoplasmic 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357513179|ref|XP_003626878.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355520900|gb|AET01354.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449507596|ref|XP_004163077.1| PREDICTED: asparagine--tRNA ligase, cytoplasmic 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356560689|ref|XP_003548622.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356503077|ref|XP_003520338.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297833532|ref|XP_002884648.1| asparaginyl-tRNA synthetase 2 [Arabidopsis lyrata subsp. lyrata] gi|297330488|gb|EFH60907.1| asparaginyl-tRNA synthetase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15231463|ref|NP_187398.1| asparaginyl-tRNA synthetase, cytoplasmic 2 [Arabidopsis thaliana] gi|20140328|sp|Q9SW95.2|SYNC2_ARATH RecName: Full=Asparagine--tRNA ligase, cytoplasmic 2; AltName: Full=Asparaginyl-tRNA synthetase 2; Short=AsnRS 2 gi|6041857|gb|AAF02166.1|AC009853_26 putative asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|332641019|gb|AEE74540.1| asparaginyl-tRNA synthetase, cytoplasmic 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 634 | ||||||
| TAIR|locus:2079646 | 638 | NS2 "asparaginyl-tRNA syntheta | 0.954 | 0.948 | 0.545 | 1.4e-174 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.768 | 0.851 | 0.497 | 1.4e-142 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.824 | 0.915 | 0.463 | 6.6e-136 | |
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.454 | 0.507 | 0.465 | 5e-104 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.432 | 0.594 | 0.443 | 8e-102 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.443 | 0.606 | 0.489 | 1.2e-98 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.427 | 0.581 | 0.5 | 3.3e-96 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.421 | 0.572 | 0.492 | 4.2e-96 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.430 | 0.585 | 0.481 | 2.3e-95 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.430 | 0.585 | 0.485 | 2.3e-95 |
| TAIR|locus:2079646 NS2 "asparaginyl-tRNA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 339/621 (54%), Positives = 434/621 (69%)
Query: 23 RYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSXXXXXXXXXXXXXXXXXXXXXXXXX 82
+YS RV LKT+L+ D G GL +RVVIGGWVK++
Sbjct: 25 KYSKRVELKTLLDRSDRGAGLAGKRVVIGGWVKSARAVKKNSPPPPLPVVAAPSPSSGGD 84
Query: 83 XXXXXXDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLEALVPKP-PPPSTVF- 140
++ C EI+QS++ F+ VL G P+ +K E K PPP VF
Sbjct: 85 QAHTTANIRCTEIIQSKMNIFKRFFDVLSGGG---KTYPIFDKTELAGQKAVPPPEYVFY 141
Query: 141 LQVSDGSCVASLQVVVESTL--VSPSKIRPIGTCLMVEGVLKQP-SVQGKHAVELKVEKI 197
+SDGS ++SLQVVV+S L V +++ +GTC++ EGVL+ P + KH +EL+ EK+
Sbjct: 142 FLISDGSSISSLQVVVDSALSTVPATQLMALGTCIVAEGVLRLPLAASAKHVIELEAEKL 201
Query: 198 LHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFL 257
LH+GTVD +KYPLS+K+LP+ MLRD +HFRPRTTTV SV R+ S+LT A+HTF Q HGF
Sbjct: 202 LHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTFLQYHGFQ 261
Query: 258 YVQVPVITTTDSEGFSEKFQVTTLF----DKREKEGPKTAKDIEGVNLDILKASIKEKSN 313
YVQVPVITTT GF E F+VTTL DK EK+ P KD G ++D +KA IKEK+
Sbjct: 262 YVQVPVITTTT--GFGEMFRVTTLLGKTDDKEEKKPPVQEKD--GFSIDTVKAVIKEKTR 317
Query: 314 KVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQT 373
++ LKRS+SNRE ++AAV DL+KTN+L S +E + K VK +K++FS+DFF R T
Sbjct: 318 LIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTGTLVKPEKLDFSKDFFGRDT 377
Query: 374 YLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCA 433
YLT SGR HLESYA ALG VY+FGPRF A+K ++++H AE VETE+AF++L+DAM CA
Sbjct: 378 YLTASGRFHLESYASALGKVYTFGPRFIADKIDNARHLAEKWNVETEMAFAELDDAMDCA 437
Query: 434 DDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEK 493
D+YFKFLCK++LE+ +D++F+SKR+D T RL++ SSS + +YTE + L+K T
Sbjct: 438 DEYFKFLCKYVLENRDEDMKFISKRVDKTITTRLEATASSSLLRFSYTEVISLLQKATTT 497
Query: 494 IFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVP 553
FETK EWGVALT EHLSYL DEIYK PVIV+ YPKA+K FYVRLNDD TVAAFD+VVP
Sbjct: 498 KFETKPEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFYVRLNDDKKTVAAFDLVVP 557
Query: 554 KGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFT 613
K G VITGSQNEER ++L+ RI E G RE++EWYLDLRRHGTVKHSG S + M+L+
Sbjct: 558 KVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRHGTVKHSGISLSMEQMLLYA 617
Query: 614 TGLTDVRDAIPFPRSLGKAYN 634
TGL D++DAIPFPRS GKA N
Sbjct: 618 TGLPDIKDAIPFPRSWGKANN 638
|
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| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SW95 | SYNC2_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.5534 | 0.9621 | 0.9561 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.946 |
| 3rd Layer | 6.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 634 | |||
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 0.0 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 1e-135 | |
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 1e-128 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-120 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 1e-108 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-92 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 9e-88 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 2e-46 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 3e-39 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 1e-37 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 2e-32 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 3e-32 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 2e-26 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 2e-26 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 1e-22 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 2e-18 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 5e-15 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 2e-14 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 8e-11 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 1e-09 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 8e-07 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 2e-06 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 3e-06 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 2e-05 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 3e-05 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 6e-05 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 7e-05 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 2e-04 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 0.001 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 999 bits (2585), Expect = 0.0
Identities = 433/628 (68%), Positives = 517/628 (82%), Gaps = 12/628 (1%)
Query: 11 TTTTATPVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPA 70
TTA+P+T + +YSNRV+LKTIL DGG GLV +RVV+GGWVK++KEVKKEP PPPP
Sbjct: 14 GDTTASPITPS-KYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPP 72
Query: 71 DFAGDAAAKSSKEKEKEKDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLEALV 130
A +S K DV C EILQSR+P FR+I +VL G + P+REK E +
Sbjct: 73 QSPSSAGDQSPGHK----DVRCTEILQSRVPIFRSIAKVLSGGG---STYPVREKTEIAI 125
Query: 131 PK--PPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP-SVQGK 187
K PPPPS +L +SDGSCVASLQVVV+S L +++ GTC++ EGVLK P QGK
Sbjct: 126 QKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLTQLMATGTCILAEGVLKLPLPAQGK 185
Query: 188 HAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHAT 247
H +EL+VEKILHIGTVD +KYPLS+KRLP+DMLRD +HFRPRTTTVASV R+RS+LTHAT
Sbjct: 186 HVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHAT 245
Query: 248 HTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR-EKEGPKTAKDIEGVNLDILKA 306
HTFFQ+HGFLYVQVP+ITTTD+ GF E F+VTTL K +KE K + EG++L+ +KA
Sbjct: 246 HTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKA 305
Query: 307 SIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSE 366
+IKEK+N VEELKRSESNREAL+AA QDLRKTN+L S LE+++KL SVK DK++FS+
Sbjct: 306 AIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSK 365
Query: 367 DFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426
DFFSR TYLTVSGRLHLESYACALGNVY+FGPRFRA++ +S++H AEM MVE E+AFS+L
Sbjct: 366 DFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSEL 425
Query: 427 EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKA 486
EDAM CA+DYFKFLCKW+LE+CS+D++FVSKRID T RL+++ISSS ++I+YTEAV
Sbjct: 426 EDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDL 485
Query: 487 LEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVA 546
L++ T+K FETK EWG+ALT EHLSYLADEIYK+PVI+YNYPK +KPFYVRLNDDG TVA
Sbjct: 486 LKQATDKKFETKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVA 545
Query: 547 AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGF 606
AFD+VVPK GTVITGSQNEER+D+LN RI+ELGLPREQYEWYLDLRRHGTVKHSGFS GF
Sbjct: 546 AFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGF 605
Query: 607 DLMVLFTTGLTDVRDAIPFPRSLGKAYN 634
+LMVLF TGL DVRDAIPFPRS GKA N
Sbjct: 606 ELMVLFATGLPDVRDAIPFPRSWGKANN 633
|
Length = 633 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.76 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.72 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.7 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.6 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.5 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.5 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.49 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.45 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.4 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.38 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.37 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.36 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.36 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.35 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.33 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.17 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.09 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.09 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.04 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.89 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.88 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.62 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.61 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.58 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.53 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.52 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.37 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.37 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.22 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.16 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 98.12 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.09 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 98.07 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.0 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 97.89 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.8 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.79 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.76 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.69 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.67 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.67 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.63 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.62 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.56 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.51 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.49 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.48 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.47 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.47 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.45 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.28 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.28 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.25 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.22 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.21 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.16 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.11 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.09 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.03 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.01 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 96.98 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 96.92 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 96.85 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 96.69 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 96.53 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.52 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.51 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.36 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.18 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 95.93 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 95.82 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.52 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 95.47 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.04 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 94.65 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 94.56 | |
| PF00458 | 56 | WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A c | 94.33 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 94.18 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 93.97 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 93.86 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 93.83 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 93.51 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 93.46 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 93.27 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 93.18 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 93.08 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 92.74 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 92.0 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 91.71 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 91.09 | |
| cd00939 | 45 | MetRS_RNA MetRS_RNA binding domain. This short RNA | 91.08 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 90.33 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 90.03 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 89.42 | |
| cd00938 | 45 | HisRS_RNA HisRS_RNA binding domain. This short RNA | 89.27 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 88.68 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 87.99 | |
| PRK12366 | 637 | replication factor A; Reviewed | 87.9 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 87.49 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 86.89 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 85.85 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 85.55 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 85.55 | |
| PRK14699 | 484 | replication factor A; Provisional | 85.45 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 84.17 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 83.95 | |
| PRK13150 | 159 | cytochrome c-type biogenesis protein CcmE; Reviewe | 83.42 | |
| PRK13254 | 148 | cytochrome c-type biogenesis protein CcmE; Reviewe | 82.96 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 82.6 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 82.14 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 81.58 | |
| PRK13159 | 155 | cytochrome c-type biogenesis protein CcmE; Reviewe | 81.21 | |
| PRK13165 | 160 | cytochrome c-type biogenesis protein CcmE; Reviewe | 80.94 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 80.47 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 80.47 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 80.13 |
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-149 Score=1247.99 Aligned_cols=616 Identities=69% Similarity=1.127 Sum_probs=560.7
Q ss_pred cccccccccccccccccccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhccccc
Q 006717 11 TTTTATPVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDV 90 (634)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (634)
+++|+.|||.+ +|++|+.+|+||+++|+|++++|++|+|+|||||.+.+||+++||+|++-+.+ +.++....+++
T Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 88 (633)
T PLN02532 14 GDTTASPITPS-KYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSS----AGDQSPGHKDV 88 (633)
T ss_pred CccccCcccch-hccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCC----CCCCCCCcCCc
Confidence 46788999998 99999999999999999999999999999999999999999998888743322 33456778999
Q ss_pred chhhhhhcccccceeeeeecCCCCCcccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCC
Q 006717 91 SCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRP 168 (634)
Q Consensus 91 ~~~~~~qs~~~~fr~~~~v~~~~~~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~ 168 (634)
+|+|++|||+|+||++++|.++++. ++.||.... ..+..|+.|+++||+||||||..+||||++++..+..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~~~L~ 165 (633)
T PLN02532 89 RCTEILQSRVPIFRSIAKVLSGGGS---TYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLTQLMA 165 (633)
T ss_pred chhHHHhhhcHHHHHHHHHHcCCCC---CCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHhhcCC
Confidence 9999999999999999999988766 233333322 11112458999999999999999999999876544446789
Q ss_pred CCcEEEEEEEEecCC-CCCCceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHH
Q 006717 169 IGTCLMVEGVLKQPS-VQGKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHAT 247 (634)
Q Consensus 169 ~Gs~V~V~G~l~~~~-~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~ai 247 (634)
+|++|.|+|+|+.++ ..++|.+||++++|+|||++++.+|||+++.+++|+||++||||+|++.++++||+||.|++++
T Consensus 166 ~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~ai 245 (633)
T PLN02532 166 TGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHAT 245 (633)
T ss_pred CceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHH
Confidence 999999999999873 2457899999999999999876789999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccC-CCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHH
Q 006717 248 HTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKE-GPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNRE 326 (634)
Q Consensus 248 r~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (634)
|+||+++||+|||||+||+++||||+++|+|+|+..+..+. ..+.+...++.+.++++|+++++++.|+.+++|++|||
T Consensus 246 R~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (633)
T PLN02532 246 HTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325 (633)
T ss_pred HHHHHHCCCEEeeCCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhccccccccccccccccc
Confidence 99999999999999999999999999999999986543332 11223455677899999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCC
Q 006717 327 ALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKE 406 (634)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~ 406 (634)
++.||++||+++|+++++++++.+++++.+.+.++.+|+.+|||+++|||||||||||+|++||+|||+||||||||+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~ 405 (633)
T PLN02532 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRID 405 (633)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCC
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHH
Q 006717 407 SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKA 486 (634)
Q Consensus 407 T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~ 486 (634)
|+||||||||||+||+|+||+|+|+++|+||++++++++++|.++|+++++.++...+++|+..++.||+||||.||+++
T Consensus 406 T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~i 485 (633)
T PLN02532 406 SARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDL 485 (633)
T ss_pred CCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888877788888888899999999999999
Q ss_pred HHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHH
Q 006717 487 LEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEE 566 (634)
Q Consensus 487 L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~ 566 (634)
|++....+|+..++||.||+++||++|++.++++|+||+|||++++||||+.++|++++++||||+|++|||+||+||||
T Consensus 486 L~~~~~~~~e~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~ 565 (633)
T PLN02532 486 LKQATDKKFETKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEE 565 (633)
T ss_pred HHHhcCCCcccccccCCccChHHHHHHHHHHcCCCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHH
Confidence 98765445667789999999999999999888999999999999999999999888999999999998889999999999
Q ss_pred hHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCCC
Q 006717 567 RIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634 (634)
Q Consensus 567 r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~~ 634 (634)
||+.|++++++.|++++.|+|||++|+||+|||||||||||||+|||||++||||||||||++|+|.|
T Consensus 566 r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 566 RMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases | Back alignment and domain information |
|---|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
| >cd00939 MetRS_RNA MetRS_RNA binding domain | Back alignment and domain information |
|---|
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00938 HisRS_RNA HisRS_RNA binding domain | Back alignment and domain information |
|---|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
| >PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
| >PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 634 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 2e-41 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 2e-28 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 3e-28 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 1e-22 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 3e-22 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 5e-22 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-21 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 2e-17 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 8e-15 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 4e-14 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 4e-14 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 2e-08 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 2e-08 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 1e-07 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 1e-07 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 6e-07 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 7e-06 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 3e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-108
Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 11/271 (4%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F+ YLT S +L+LES +LG + +RAE+ + +H AE L +E E+ F
Sbjct: 195 FKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
ED + +D + ++ + ++ + + + F+++TY +A
Sbjct: 255 ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADA 305
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYV-RLNDDG 542
+K + E+G ++ + + DEI P+ + ++P +K FY+ ++
Sbjct: 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHP 364
Query: 543 NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGF 602
+ + D+++P G ++ GS D L K GL + Y WY R++G+ H G+
Sbjct: 365 DLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGY 424
Query: 603 SFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633
G + +V++ G +R +PR L +
Sbjct: 425 GLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.85 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.83 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.66 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.29 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.18 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.89 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.63 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.06 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 97.97 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 97.94 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.91 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.9 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.82 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 97.77 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.76 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.75 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.75 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.73 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.68 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.67 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.66 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.66 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.65 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.64 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.59 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.58 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.53 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.51 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.51 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.49 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.48 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.47 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.47 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.46 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.4 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.39 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.36 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.33 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.32 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.19 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.08 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 96.94 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 96.86 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.39 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.31 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.2 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.07 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 95.75 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 95.21 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 95.19 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 94.86 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 94.62 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 94.06 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 93.72 | |
| 1d2d_A | 59 | TRNA synthetase, tRNA ligase; tRNA synthetase (lig | 93.53 | |
| 1fyj_A | 57 | Multifunctional aminoacyl-tRNA synthetase; helix-t | 93.27 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 93.06 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 92.92 | |
| 1sr3_A | 136 | APO-CCME; OB fold, beta barrel, flexible C-termina | 91.73 | |
| 2djv_A | 79 | Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d | 91.25 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 90.8 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 90.71 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 90.67 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 90.62 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 90.44 | |
| 1j6q_A | 136 | Cytochrome C maturation protein E; all-beta protei | 90.14 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 89.88 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 89.3 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 87.79 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 87.62 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 87.08 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 86.09 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 84.73 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 84.36 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 81.04 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 80.72 |
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-106 Score=886.71 Aligned_cols=425 Identities=23% Similarity=0.392 Sum_probs=366.8
Q ss_pred eeeecCCCCCcccccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCC-CCCC--CCCCCCCcEEEEEEEEec
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVEST-LVSP--SKIRPIGTCLMVEGVLKQ 181 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~-~~~~--~~~l~~Gs~V~V~G~l~~ 181 (634)
+..|.++....+++|+|+|||+++|. +| +++|++||||||. ||||++.+ .... ...++.||+|.|+|+|++
T Consensus 19 ~~~i~~~~~~~g~~V~v~Gwv~~~R~---~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 93 (456)
T 3m4p_A 19 VCNIRDAAGLEGKLVTFKGWAYHIRK---ARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTRECSLEITGRLNA 93 (456)
T ss_dssp CEECCSTTCCCSSEEEEEEEEEEEEC---CSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTTCCTTCEEEEEEEEEC
T ss_pred EEEhhhhhhcCCCEEEEEEEEEEEec---CCCceEEEEEEeCCcc--EEEEEecccchhhHHhhcCCCccEEEEEeEEEe
Confidence 45566776677889999999999998 86 6999999999996 99999873 2221 246899999999999998
Q ss_pred CCCCC--C-----ceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhC
Q 006717 182 PSVQG--K-----HAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNH 254 (634)
Q Consensus 182 ~~~~~--~-----q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~ 254 (634)
++.+. . |++||+|+++++|++|.....+...+.++.|+|+++||||+|++.++++||+||.|++++|+||+++
T Consensus 94 ~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~~ 173 (456)
T 3m4p_A 94 YAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDN 173 (456)
T ss_dssp CCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87421 2 8899999999999999521111223567899999999999999999999999999999999999999
Q ss_pred CcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHh
Q 006717 255 GFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQD 334 (634)
Q Consensus 255 gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (634)
||+||+||+|++++||||+++|.+
T Consensus 174 gF~EVeTPiL~~s~~eGg~~~f~~-------------------------------------------------------- 197 (456)
T 3m4p_A 174 HFTEIQPPTIVKTQCEGGSTLFKL-------------------------------------------------------- 197 (456)
T ss_dssp TCEECCCCSEEC------CCCCEE--------------------------------------------------------
T ss_pred CCEEEeCCeeecCCCCCccccccc--------------------------------------------------------
Confidence 999999999999999999998854
Q ss_pred hhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccc
Q 006717 335 LRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEM 414 (634)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEF 414 (634)
+|||+++||+||||||||+|++|++||||||||||||+++|.||||||
T Consensus 198 --------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEF 245 (456)
T 3m4p_A 198 --------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEY 245 (456)
T ss_dssp --------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEE
T ss_pred --------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHH
Confidence 689999999999999999988899999999999999999999999999
Q ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccc
Q 006717 415 LMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKI 494 (634)
Q Consensus 415 tmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~ 494 (634)
|||||||+|+|++|+|+++|+||+++++.+++++...+..++..+ ..+..||+||||.||+++|++.+...
T Consensus 246 tmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~---------~~~~~pf~rity~eAi~~l~~~g~~~ 316 (456)
T 3m4p_A 246 LHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHL---------KLPTRPFKRMTYADAIKYCNDHGILN 316 (456)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---------CCCCSSCEEEEHHHHHHHHHHHTCCS
T ss_pred HHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCccc---------ccCCCCCeEeeHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999988754443332211 12467999999999999998764211
Q ss_pred cccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHH
Q 006717 495 FETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNT 573 (634)
Q Consensus 495 f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~ 573 (634)
......||.+|+.++|++|.+.+ ++|+||+|||++++||||+.+ +|+++++|||||+|+.+||+||+||++++++|.+
T Consensus 317 ~~~~~~~g~~l~~~~e~~l~~~~-~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~ 395 (456)
T 3m4p_A 317 KDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMG 395 (456)
T ss_dssp SSSCCCTTCCCCHHHHHHHHHHH-TSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHH
T ss_pred cccCcchHHHHHHHHHHHHHHHh-CceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHH
Confidence 11346799999999999998864 899999999999999998765 4568899999999744799999999999999999
Q ss_pred HHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 574 RIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 574 ~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
++++.|++++.|+|||++++||+|||||||||||||+|++||++||||||+|||+++||.
T Consensus 396 r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 396 AYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999995
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A | Back alignment and structure |
|---|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 | Back alignment and structure |
|---|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
| >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 | Back alignment and structure |
|---|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A | Back alignment and structure |
|---|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 634 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-38 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 5e-09 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 3e-36 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 2e-08 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 2e-35 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 3e-09 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 5e-34 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 2e-07 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 3e-33 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 2e-09 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 5e-28 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 3e-07 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 6e-27 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 1e-07 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 142 bits (358), Expect = 2e-38
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 22/268 (8%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F D+F ++ YL S +L+ + VY P +R E+ +S+H E L ++ E+ F
Sbjct: 54 FGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 113
Query: 424 SQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTE 482
ED M+ + + + L ++ + ++T+ E
Sbjct: 114 IADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS---------FPQDIPRLTHAE 164
Query: 483 AVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR----PVIVYNYPKAVKPFYVRL 538
A + L++ E G L+ E L + +R + V YP++V+PFY
Sbjct: 165 AKRILKE------ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP 218
Query: 539 NDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVK 598
+DG T + ++ +G + +G Q R + L +K G+ E + YL++ ++G
Sbjct: 219 EEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPP 276
Query: 599 HSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
H GF+ G + + GL +VR A FP
Sbjct: 277 HGGFAIGAERLTQKLLGLPNVRYARAFP 304
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 634 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.72 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.61 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.6 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.57 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.56 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.39 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 98.9 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.64 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.53 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.42 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.12 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 97.68 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.63 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.6 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.57 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.17 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.11 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 96.55 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.33 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 95.92 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 94.91 | |
| d1fyja_ | 57 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 94.22 | |
| d1r6ta1 | 54 | N-terminal domain of eukaryotic tryptophanyl-tRNA | 93.38 | |
| d1d2da_ | 56 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 93.08 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 92.56 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 92.27 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 89.54 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 89.06 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 88.09 | |
| d1sr3a_ | 114 | Heme chaperone CcmE {Escherichia coli [TaxId: 562] | 86.57 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 83.59 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-81 Score=664.15 Aligned_cols=322 Identities=24% Similarity=0.436 Sum_probs=281.3
Q ss_pred CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCccc
Q 006717 215 LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAK 294 (634)
Q Consensus 215 ~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~ 294 (634)
.+.|+|+++||||+|++..+++||+||.|++++|+||.++||+||+||+|++++|||++++|.|+
T Consensus 22 ~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~--------------- 86 (353)
T d1eova2 22 VNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT--------------- 86 (353)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE---------------
T ss_pred CCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccce---------------
Confidence 57999999999999999999999999999999999999999999999999999999999999763
Q ss_pred ccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceee
Q 006717 295 DIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTY 374 (634)
Q Consensus 295 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~y 374 (634)
||+.++|
T Consensus 87 -------------------------------------------------------------------------~~~~~~y 93 (353)
T d1eova2 87 -------------------------------------------------------------------------YFKGKAY 93 (353)
T ss_dssp -------------------------------------------------------------------------ETTEEEE
T ss_pred -------------------------------------------------------------------------eeCCcce
Confidence 5788899
Q ss_pred eccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHHHHHHHHHhhCccch
Q 006717 375 LTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILEDCSKDL 452 (634)
Q Consensus 375 LtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik~l~~~vl~~~~~dl 452 (634)
|++|||||||+| ++|++||||||||||||++++.||||||||||||++|.| ++++|+++|+|++++++.+.+.+...+
T Consensus 94 L~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~~~~ 173 (353)
T d1eova2 94 LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEI 173 (353)
T ss_dssp ECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhhhhh
Confidence 999999999996 568999999999999999998899999999999999998 899999999999999999998887777
Q ss_pred hhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhH---HhhhC-CccEEEEeCC
Q 006717 453 EFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYL---ADEIY-KRPVIVYNYP 528 (634)
Q Consensus 453 ~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L---~e~~~-~~PvfVtdyP 528 (634)
+++...... .........+|.|++|.||++.|++... ...+..++..+.++.+ +++.+ ..|+||+|||
T Consensus 174 ~~~~~~~~~---~~~~~~~~~~~~ri~~~ea~~~l~~~~~-----~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~i~~~P 245 (353)
T d1eova2 174 ELVRKQYPV---EEFKLPKDGKMVRLTYKEGIEMLRAAGK-----EIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFP 245 (353)
T ss_dssp HHHHHHSCC---CCCCCCTTCCCEEEEHHHHHHHHHHTTC-----CCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCB
T ss_pred hhhcccCcc---ceeeccCCCceeeeehHhhHHHHHHHhh-----hcccccccchhhHHHHHHHHHhhccCCcccccCCc
Confidence 766543321 1122334568999999999999987632 1223445666665543 33334 4567999999
Q ss_pred CCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccC--hHHHHHHHhcCCCCcceeecc
Q 006717 529 KAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQ--YEWYLDLRRHGTVKHSGFSFG 605 (634)
Q Consensus 529 ~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~--~~wYLda~kyG~PPhgGfGLG 605 (634)
.+++|||++.+ +++++++|||||+ +|+||+||++|++++++|++++++.|++++. |+|||+|++||+|||||||||
T Consensus 246 ~~~~p~~~~~~~~~~~~a~rfeL~~-~G~El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glG 324 (353)
T d1eova2 246 LEIRPFYTMPDPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIG 324 (353)
T ss_dssp GGGSCTTBCBCSSCTTBBSEEEEEE-TTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEE
T ss_pred HHHhhhhhCCChhhhhhhhceeeee-eceEEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeH
Confidence 99999998755 5667899999999 7999999999999999999999999998764 899999999999999999999
Q ss_pred HHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 606 FDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 606 iERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||||+|+++|.+||||||+|||+++||.
T Consensus 325 iDRL~m~l~~~~~Irdvi~FPr~~~~~~ 352 (353)
T d1eova2 325 LERVVMFYLDLKNIRRASLFPRDPKRLR 352 (353)
T ss_dssp HHHHHHHHTTCSSGGGGCSSCCBTTBCC
T ss_pred HHHHHHHHhCCCcHHheeCCCCCCCCCC
Confidence 9999999999999999999999999985
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| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
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| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
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| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
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| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
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| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
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| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
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| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
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| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
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| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
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| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
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| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
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| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
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| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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