Citrus Sinensis ID: 007729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MNKGTKNSQAEVEAAAGGSDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLLML
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHcccccHcHHHcccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcc
Coil and Loop (DISEMBL)
MNKGTKNSQAEVEAaaggsdvrftvqperelqANWEVDLAKKLEDYLLKICSgqvtaseslDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISqksqqdqiegtpvqaeesgshavageendffwgfddvpvevkncldspngkdtslnlfvkppanlvvlegdcldtvgdgtELESYLLATSDLYRDFILldtydsvavddflegdevckgpndvyrgsstrksfqsptrrsggtahksslaknkdvnlpasprvacgfdvgpnppvndnfgenyhgfdmddnyseprdfdnsddeddpwkplnphepgnlkvkpfrkvKTFRRNgvksakrisistifplaklrgtispeLTEIWEARHKCFeeqrasqppsLYEKLRQSLADEGhetfdafanpgcyedkgydsgdpdighpdfdmpdgmymdedvplqhdkhddgpapfepneafehgsqdshANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEqvtycftpfypessyislssTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKEtmeishpllml
Flexible Loop (DISEMBL)
mnkgtknsqaeveaaaggsdvrftVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFlegdevckgpndvyrgsstrksfqsptrrsggtahksslaknkdvnlpASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWkplnphepgnlkvkpfrkvktfrrngvksakrisistifplaklrgtiSPELTEIWEARHKCFEeqrasqppsLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKetmeishpllml
Low Complexity Region (SEG)
MNKGTKNSQAEVEAAAGGSDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLLML
Disordered region (IsUnstruct)
*****************************ELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFI***************************ENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKG*********************************************CGF**********************************************************KVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCF****************************AFA**GCY**************************************************************LCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETME********
Disordered Region (DISOPRED)
***********************TVQPERELQANWEVDLAKKLEDYLLKICSGQVT****LDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLE*******************************DFFWGFDDVPVEVKN*******************ANLVV****************SYLLATSDLYRDFILLDTYDSVAVDDFLE************************************************************************************************KPLNPHEPGNLKVKPFR**********************PLAKLRGTISPELTEIWE*********************************DAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQ******************************LCRSHLDALLA*I*******E**ARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLLML
Disordered Region (DISEMBL)
******************SDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQ********************AVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYR***********************LAKNKDVNLPASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEP**********DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCF**********LYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLLML
Disordered Region (DISPRO)
*********************RFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQ**************************FWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDE****************************************************************************************EDDPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADE*************************IGHPDFDMPDGMYMDEDVPLQH*****GPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLL*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKGTKNSQAEVEAAAGGSDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLISYHLKETMEISHPLLML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
Q9LUR0	683	Condensin-2 complex subun	yes	no	0.818	0.708	0.555	1e-143
Q641G4	624	Condensin-2 complex subun	N/A	no	0.199	0.189	0.401	8e-16
Q6IBW4	605	Condensin-2 complex subun	no	no	0.204	0.2	0.414	1e-15
Q28GV1	624	Condensin-2 complex subun	yes	no	0.148	0.141	0.489	4e-15
Q8BSP2	607	Condensin-2 complex subun	yes	no	0.201	0.196	0.408	4e-15
Q3SZL8	622	Condensin-2 complex subun	yes	no	0.143	0.136	0.505	5e-15
Q5RH01	592	Condensin-2 complex subun	yes	no	0.172	0.172	0.415	9e-14
Q4V8I2	554	Condensin-2 complex subun	yes	no	0.130	0.138	0.459	1e-08
P34341	821	Kleisin, abnormal closure	yes	no	0.182	0.131	0.272	3e-06

>sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2 PE=2 SV=1

 Score =  510 bits (1313), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/511 (55%), Positives = 350/511 (68%), Gaps = 27/511 (5%)

Query: 17  GGSDVR----FTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAA 72
           GG +VR     TVQPER+L ANWEVDL++KLE+YLLKICSG++T +E    I VNFAEAA
Sbjct: 5   GGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAA 64

Query: 73  LLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFF 132
           LL+QGSVQVYS+KVEYLYNLVL TLEF+S++  Q+Q +GT  + E S S  V  EEND F
Sbjct: 65  LLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLF 124

Query: 133 WGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSD 192
           W  DD+PV+ KN LDS  G DT  + FVKPPANLVVLEGDCLDT GDG ELESYLLAT+ 
Sbjct: 125 WNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTH 184

Query: 193 LYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAK 252
           LYRDFILLD  D+VAV++FL  +   KG N  +RGSS RKSF S   RSGG+A KSS+ K
Sbjct: 185 LYRDFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGK 244

Query: 253 NKDVNLPASPRVACG-----FDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSD-DED 306
           N+  N+  SP    G      D G  PPV   F +N HGFDMD+ Y    DF ++D DED
Sbjct: 245 NQGTNVHLSPICGNGPNDQNCDQGSQPPV---FEDNDHGFDMDNEYGGAMDFSDTDADED 301

Query: 307 DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
           DPWKPLNP+EPG LKVKPF+KVK  ++ G  S  +  ++++FPLA+  G IS EL EIW+
Sbjct: 302 DPWKPLNPYEPGKLKVKPFKKVKILKKIGW-SITKDHMTSMFPLARPNGPISSELIEIWK 360

Query: 367 ARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDP-------D 419
                 ++++ASQ    YEKLR+ L + G++   A  N   Y D   D+ D        D
Sbjct: 361 MHGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGN---YNDNDKDNHDEANNGDFHD 417

Query: 420 IGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL 479
            G  D D  +  +MDEDV    + +D G A F   + FE+G  +   +LEDLCRSHLDAL
Sbjct: 418 FGEHDGDDAEHPFMDEDVL---NMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDAL 474

Query: 480 LANIAETEKQTELAARVSSWKQKIENNLDEQ 510
           LANIA++EKQT+LAARVS+WKQKIE NL+EQ
Sbjct: 475 LANIAKSEKQTDLAARVSTWKQKIEQNLEEQ 505

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture (By similarity). The condensin-2 complex plays a role in DNA damage repair or in protecting the genome from certain genotoxic stressors (e.g. boron excess, zeocin and aphidicolin).
Arabidopsis thaliana (taxid: 3702)

>sp|Q641G4|CNDH2_XENLA Condensin-2 complex subunit H2 OS=Xenopus laevis GN=ncaph2 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 19  SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQ 76
           ++ RFT  +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NFAEAALL+Q
Sbjct: 4   AESRFTHLLQPVRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQ 61

Query: 77  GSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFD 136
           GS  +YS+KVEYLY+LV   L+FIS K +  Q        E+  +      + + F   D
Sbjct: 62  GSACIYSKKVEYLYSLVYQALDFISNKKRVQQPTSVGADGEDKDATFAHRNDEEEFLSLD 121

Query: 137 DV 138
           D+
Sbjct: 122 DI 123

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture.

Xenopus laevis (taxid: 8355)

>sp|Q6IBW4|CNDH2_HUMAN Condensin-2 complex subunit H2 OS=Homo sapiens GN=NCAPH2 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 14/135 (10%)

Query: 20  DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
           + RF   +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QG
Sbjct: 5   EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62

Query: 78  SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAG---EENDFFWG 134
           S  VYS+KVEYLY+LV   L+FIS K +  Q+    VQ + +   A +G   E  + F  
Sbjct: 63  SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSS--VQEDRANGVASSGVPQEAENEFLS 120

Query: 135 FDDVP-----VEVKN 144
            DD P     V++KN
Sbjct: 121 LDDFPDSRTNVDLKN 135

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

Homo sapiens (taxid: 9606)

>sp|Q28GV1|CNDH2_XENTR Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 4/92 (4%)

Query: 19  SDVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQ 76
           ++ RFT  +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NFAEAALL+Q
Sbjct: 4   AESRFTHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDGGKTTMNFAEAALLIQ 61

Query: 77  GSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQ 108
           GS  +YS+KVEYLY+LV   L+FIS K +  Q
Sbjct: 62  GSACIYSKKVEYLYSLVYQALDFISNKKRDQQ 93

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture.

Xenopus tropicalis (taxid: 8364)

>sp|Q8BSP2|CNDH2_MOUSE Condensin-2 complex subunit H2 OS=Mus musculus GN=Ncaph2 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 77/137 (56%), Gaps = 18/137 (13%)

Query: 20  DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
           +VRF   +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QG
Sbjct: 5   EVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62

Query: 78  SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEEN-----DFF 132
           S  VYS+KVEYLY+LV   L+FIS K +  Q+       +E GS      E      + F
Sbjct: 63  SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSLV----QEDGSKKTVNSETPCETENEF 118

Query: 133 WGFDDVP-----VEVKN 144
              DD P     V++KN
Sbjct: 119 LSLDDFPDSRANVDLKN 135

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture (By similarity). Seems to have lineage-specific role in T-cell development.

Mus musculus (taxid: 10090)

>sp|Q3SZL8|CNDH2_BOVIN Condensin-2 complex subunit H2 OS=Bos taurus GN=NCAPH2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 27  PERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKV 86
           P R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QGS  VYS+KV
Sbjct: 14  PIRDLTRNWEVDVAAQLGEYLEEL--DQICISFDKGKTTMNFIEAALLIQGSACVYSKKV 71

Query: 87  EYLYNLVLHTLEFISQKSQQDQIEGTP 113
           EYLY+LV   L+FIS K Q  Q+  TP
Sbjct: 72  EYLYSLVYQALDFISGKKQAKQLSSTP 98

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

Bos taurus (taxid: 9913)

>sp|Q5RH01|CNDH2_DANRE Condensin-2 complex subunit H2 OS=Danio rerio GN=ncaph2 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 25  VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSR 84
           +QP R+L  NW++DLA +L +YL ++   Q+T S       +NFAEAALL+QGS  +Y R
Sbjct: 12  LQPLRDLTKNWDIDLASQLGEYLEEL--DQMTISFDGGKTMMNFAEAALLIQGSTCIYGR 69

Query: 85  KVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEEND 130
           KVE L+ LV  TL++IS K+++   +G+   ++ +   A +G E D
Sbjct: 70  KVELLHTLVFQTLDYISNKNKKRDKQGS--SSDGNQEQAPSGSEGD 113

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture.

Danio rerio (taxid: 7955)

>sp|Q4V8I2|CNDH2_RAT Condensin-2 complex subunit H2 OS=Rattus norvegicus GN=Ncaph2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 10/87 (11%)

Query: 66  VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVA 125
           +NF EAALL+QGS  VYS+KVEYLY+LV   L+FIS K +  Q+  + VQ + S     +
Sbjct: 1   MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQL--SLVQEDGSNRAVNS 58

Query: 126 G---EENDFFWGFDDVP-----VEVKN 144
           G   E  D F   DD P     V++KN
Sbjct: 59  GTPCETEDEFLSLDDFPDSRANVDLKN 85

Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

Rattus norvegicus (taxid: 10116)

>sp|P34341|KLE2_CAEEL Kleisin, abnormal closure, protein 2 OS=Caenorhabditis elegans GN=kle-2 PE=4 SV=2

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 13/121 (10%)

Query: 18  GSDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISV----NFAEAAL 73
            +D+ + V P ++L  N+ +D+ K L  YL  I          +D+ +     +F  A  
Sbjct: 11  STDLAWLVTPAKDLVENFSIDVLKALAGYLEVIRQESEDTDNQVDAATTYRLFDFQRACR 70

Query: 74  LVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFW 133
           ++QGS  VY RKV+++Y L +  ++ +  K Q D           +GS   AG   +F  
Sbjct: 71  IIQGSCAVYGRKVDHVYELTISVVDLVENKGQDDG---------NTGSRRGAGRRKNFNL 121

Query: 134 G 134
           G
Sbjct: 122 G 122

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
255551827	667	conserved hypothetical protein [Ricinus	0.800	0.709	0.637	1e-168
224130396	645	predicted protein [Populus trichocarpa]	0.820	0.751	0.633	1e-167
224107070	657	predicted protein [Populus trichocarpa]	0.788	0.709	0.554	1e-149
225431786	666	PREDICTED: condensin-2 complex subunit H	0.798	0.708	0.592	1e-148
356558181	674	PREDICTED: uncharacterized protein LOC10	0.808	0.709	0.572	1e-146
356532557	673	PREDICTED: condensin-2 complex subunit H	0.802	0.704	0.576	1e-145
297834564	683	hypothetical protein ARALYDRAFT_897993 [	0.818	0.708	0.561	1e-144
145338603	683	condensin-2 complex subunit H2 [Arabidop	0.818	0.708	0.555	1e-142
296083331	1281	unnamed protein product [Vitis vinifera]	0.798	0.368	0.517	1e-135
449454331	593	PREDICTED: condensin-2 complex subunit H	0.776	0.774	0.503	1e-121

>gi|255551827|ref|XP_002516959.1| conserved hypothetical protein [Ricinus communis] gi|223544047|gb|EEF45573.1| conserved hypothetical protein [Ricinus communis]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 317/497 (63%), Positives = 379/497 (76%), Gaps = 24/497 (4%)

Query: 24  TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYS 83
           TVQ ER+L+ANW+VDLAKKLEDYLLK+CSG++T+    D++SVNFAEAALL+QGSVQVYS
Sbjct: 16  TVQAERDLEANWDVDLAKKLEDYLLKLCSGEITSD---DNVSVNFAEAALLLQGSVQVYS 72

Query: 84  RKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK 143
           RKVEYLYNLVLH L+F+SQK QQ+Q EGT  Q E++GS+A + EE+D FW  DDVPVE +
Sbjct: 73  RKVEYLYNLVLHALDFLSQKRQQEQTEGTSFQPEQNGSNAASDEESDQFWVSDDVPVEAR 132

Query: 144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTY 203
           N LD+   KD SL  FVKPPANL+VLEGDCL+T GDG EL+SYLLAT+DLYRDFILLD  
Sbjct: 133 NSLDASTSKDDSLYHFVKPPANLIVLEGDCLNTTGDGGELDSYLLATNDLYRDFILLDPC 192

Query: 204 DSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPR 263
           D+ AV+DF  GDE  KG N   +GSS RKSFQSP+RRSGGTA KSSL KN+D  L  +P 
Sbjct: 193 DADAVNDFFNGDETGKGLNSTCKGSSPRKSFQSPSRRSGGTARKSSLGKNQDAKLNQTPV 252

Query: 264 VACGF-----DVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNS---DDEDDPWKPLNPH 315
             C F      V PNP          +G DMDD+YSEPR+++ S   +++DDPWKPLNPH
Sbjct: 253 ADCIFGDNSSKVVPNP-------HTCNGLDMDDDYSEPRNWEGSDDDNNDDDPWKPLNPH 305

Query: 316 EPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQ 375
           EPG LKVKPFRKVK +RRN VKSA++ SI+T+FPLA++RGTISPELTEIWEAR    E+ 
Sbjct: 306 EPGTLKVKPFRKVKPYRRNVVKSARQTSITTMFPLARMRGTISPELTEIWEARFSRSEKT 365

Query: 376 RASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKG--YDSGDPDIGHPDFDMPDGMYM 433
            ++  P LYEKLRQSL++ G+   D F N    +D+G  +DSG PD G PD D+P+ MYM
Sbjct: 366 ESADSPPLYEKLRQSLSNGGYNNSDTFGN-AENDDEGNEHDSGVPDFGQPDDDIPENMYM 424

Query: 434 DEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELA 493
           DED  L H+K       F+ NEAF +    S A+LEDLCRSHLDALLANIAETEKQTELA
Sbjct: 425 DED--LHHEKVGSS-THFDINEAFGNEDPSSQASLEDLCRSHLDALLANIAETEKQTELA 481

Query: 494 ARVSSWKQKIENNLDEQ 510
            RVSSWKQKIE+NL+EQ
Sbjct: 482 TRVSSWKQKIEHNLEEQ 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130396|ref|XP_002328598.1| predicted protein [Populus trichocarpa] gi|222838580|gb|EEE76945.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/496 (63%), Positives = 374/496 (75%), Gaps = 11/496 (2%)

Query: 24  TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYS 83
           TVQ ER+L+ANWEVDL+KKLEDYLLKICSG++  +E  +  +VNFAEAALL+QGSVQVYS
Sbjct: 14  TVQAERDLEANWEVDLSKKLEDYLLKICSGEIAGNE--EDSNVNFAEAALLLQGSVQVYS 71

Query: 84  RKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK 143
           RKVEYLYNLVLH L+F+SQK QQ+Q EG  VQ E+SGS AV+ ++ND FW  DDVPVE +
Sbjct: 72  RKVEYLYNLVLHALDFLSQKRQQEQSEGASVQPEQSGSQAVSDDDNDQFWVSDDVPVEPR 131

Query: 144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTY 203
           N LD+   KD S   FVKPPANL+VLEGDCLDT GDG ELESYLLAT+DLYRDFILL+  
Sbjct: 132 NYLDASTSKDASFYHFVKPPANLIVLEGDCLDTSGDGGELESYLLATNDLYRDFILLNPC 191

Query: 204 DSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPR 263
           D++AV+DFL+ D+  K     YRGSSTRK+FQSPTR SGGTA+K S  KN+D N    P 
Sbjct: 192 DAIAVNDFLKADDTRKAQYGSYRGSSTRKTFQSPTRCSGGTAYKPSFGKNRDANPMQPPV 251

Query: 264 VACGFD-----VGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPG 318
             CGF       GP+P V+DNF  N HGFDM+D +SEP + ++ DD+DDPWKPLNPHEPG
Sbjct: 252 AGCGFQANDYKTGPDPTVHDNFDSN-HGFDMEDTHSEPDNEEDLDDDDDPWKPLNPHEPG 310

Query: 319 NLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRAS 378
           NLKVKPF KVK FRRNG KSAK+ SI+T+FP A++ G +S +LTE+WEAR     + R +
Sbjct: 311 NLKVKPFEKVKAFRRNGKKSAKQASITTLFPPARMHGPVSLDLTEMWEARQNELGKHRNT 370

Query: 379 QPPSLYEKLRQSLADEGHETFDAFANPGC-YEDKGYDSGDPDIGHPDFDMPDGMYMDEDV 437
           QP  LY KLR+SL +EGH   D F   G   ED  YD+G PD G  D ++P+  Y DED 
Sbjct: 371 QPTPLYVKLRKSLTNEGHNIPDTFGTSGNDNEDNAYDTGFPDFGQHDDEIPE--YKDEDF 428

Query: 438 PLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVS 497
           P   +KHDDG   F+  + F HG Q S A+LEDLCRSHLDALLANIAETEKQTELA RVS
Sbjct: 429 PPPREKHDDGATCFDTYKDFGHGDQSSQASLEDLCRSHLDALLANIAETEKQTELATRVS 488

Query: 498 SWKQKIENNLDEQVTY 513
           SWKQKIE NL+EQ ++
Sbjct: 489 SWKQKIEQNLEEQDSH 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107070|ref|XP_002314365.1| predicted protein [Populus trichocarpa] gi|222863405|gb|EEF00536.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 297/536 (55%), Positives = 357/536 (66%), Gaps = 70/536 (13%)

Query: 24  TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYS 83
           TVQ ER+L+ANWEVDL+KKLEDYLLKICSG++  +E  +  +VNFAEAALL+QGSVQVYS
Sbjct: 5   TVQAERDLEANWEVDLSKKLEDYLLKICSGEIAGNE--EDSNVNFAEAALLLQGSVQVYS 62

Query: 84  RKVEYLYNLVLHTLEFISQKS--------------------------------------Q 105
           RKVEYLYNLVLH L+F+SQK                                       Q
Sbjct: 63  RKVEYLYNLVLHALDFLSQKRYSFFYLFYREYGYRLRDDKKCIQLSPFSRAGIFKCSYMQ 122

Query: 106 QDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPAN 165
           QDQ EGT VQ E+SGS AV+ EEND FW  DDVPVE +NCLD+   KD S   FVKPPAN
Sbjct: 123 QDQSEGTSVQTEQSGSRAVSDEENDQFWVSDDVPVEARNCLDASTSKDASFYHFVKPPAN 182

Query: 166 LVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVY 225
           LV                    LAT+DLY+DFILLD  D++A++DFL+ D+  +  N  Y
Sbjct: 183 LV--------------------LATNDLYQDFILLDPCDALAINDFLKADDTGRAQNGPY 222

Query: 226 RGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDVG-----PNPPVNDNF 280
           RGSS RK+FQSPTR SGGTA+K SL KN+D N   SP   C F V      P+P V+DNF
Sbjct: 223 RGSSIRKTFQSPTRCSGGTANKPSLGKNRDANPMPSPVAGCSFGVNDCKIRPDPRVHDNF 282

Query: 281 GENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRK-VKTFRRNGVKSA 339
            EN  GFDM+D YS+P + ++SDD DDPWKPLNPHEPGNLKVK F+K VK FRRNG+KSA
Sbjct: 283 DEN-PGFDMEDRYSDPENAEDSDDNDDPWKPLNPHEPGNLKVKTFKKAVKDFRRNGLKSA 341

Query: 340 KRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEK-LRQSLADEGHET 398
           ++ SI+ +FPLA++ GTISP+L +IWEA+     +   +Q P+LYEK L   L    H  
Sbjct: 342 EKTSITALFPLARMHGTISPDLAKIWEAQQNKIGKHGNTQSPTLYEKVLVFLLMSLWHNI 401

Query: 399 FDAFANPGC-YEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAF 457
            D + N G   ED  YD+G PD G PD ++ + M  D   PL H+KHDDG   F+  + F
Sbjct: 402 PDTYGNSGNDNEDNAYDTGIPDFGQPDEEISECMNEDSPPPL-HEKHDDGGTHFDTYKDF 460

Query: 458 EHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTY 513
            HG Q S A+LEDLCRSHLDALLANIAETEKQTELAARVSSWK KIE NL+EQ ++
Sbjct: 461 GHGDQRSQASLEDLCRSHLDALLANIAETEKQTELAARVSSWKLKIEQNLEEQDSH 516

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431786|ref|XP_002270818.1| PREDICTED: condensin-2 complex subunit H2-like [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 302/510 (59%), Positives = 352/510 (69%), Gaps = 38/510 (7%)

Query: 12  VEAAAGGSDVRF-TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAE 70
            E  +G  +  F TVQP R+L++NW VDLAK LE+YLLKICSG+++ +   D  +VNFAE
Sbjct: 8   AEDLSGDRNASFHTVQPLRDLESNWSVDLAKNLEEYLLKICSGEISGN---DGRNVNFAE 64

Query: 71  AALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEEND 130
           AALL+QGS+QVYSRKVEYLY LVLH LEF+S   QQDQ+E TP+Q EE GSH V  EE+D
Sbjct: 65  AALLLQGSIQVYSRKVEYLYTLVLHALEFVSHTRQQDQLERTPIQHEEGGSHVVPDEEDD 124

Query: 131 FFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLAT 190
            FW  DDVPVE +NCLDS   KD SLN FVK PANLVVLEG   D  GDG EL+SYLLAT
Sbjct: 125 LFWCLDDVPVEPRNCLDSTTSKDASLNQFVKAPANLVVLEG---DATGDGGELDSYLLAT 181

Query: 191 SDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSS----TRKSFQSPTRRSGGTAH 246
           +DLYRDFILLD  D+VAVD FL+GD+  KG N  Y+  S    + KSFQSP+RRSGGTAH
Sbjct: 182 NDLYRDFILLDPCDAVAVDSFLKGDKDSKGLNGDYKSGSLNSKSCKSFQSPSRRSGGTAH 241

Query: 247 KSSLAKNKDVNLPASPRVACGF-----DVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDN 301
           +S    N +      P V C F      +GP PP  D   EN  G           D D+
Sbjct: 242 RSHGKSNLN-----EPWVDCSFAANEGKIGPEPPAFD-IAENNDGHTDHAGLDNSDDDDD 295

Query: 302 SDDEDDPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPEL 361
            DD DDPWKPLNPHE GNLKVKPF+KVK FRR+GV S K   ++T FPLAK+ G ISPEL
Sbjct: 296 DDDNDDPWKPLNPHEAGNLKVKPFKKVKAFRRHGVCSTKHNILTTQFPLAKMHGPISPEL 355

Query: 362 TEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFAN-PGCYEDKGYDSGDPDI 420
           TEIWE +H+  E Q+  Q P LYEKLR SL     +TF A++N     ED GYDSG  D 
Sbjct: 356 TEIWE-KHRACERQQEPQTPPLYEKLRNSLIHGDSQTFSAYSNVEDNKEDGGYDSGVNDF 414

Query: 421 GHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALL 480
           G    +MP  MYMD+D+PL  ++HDDG A F           DS  NLEDLCRSHLDALL
Sbjct: 415 GD---EMPHDMYMDDDLPLHQEQHDDGAACF-----------DSIDNLEDLCRSHLDALL 460

Query: 481 ANIAETEKQTELAARVSSWKQKIENNLDEQ 510
           ANIAETEKQTELAARVS+WKQKIE++L+EQ
Sbjct: 461 ANIAETEKQTELAARVSTWKQKIEHDLEEQ 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558181|ref|XP_003547386.1| PREDICTED: uncharacterized protein LOC100786571 [Glycine max]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/494 (57%), Positives = 353/494 (71%), Gaps = 16/494 (3%)

Query: 24  TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYS 83
            V  ER+L++NWEVDLAKKLE+YLLKICSG++   E   S  VNFAEAALL+QGS+QVYS
Sbjct: 18  AVHAERDLESNWEVDLAKKLEEYLLKICSGEIIGEEEGHS-HVNFAEAALLLQGSIQVYS 76

Query: 84  RKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK 143
           RKVEYLY LVL  LEF+SQK QQD  +G  VQ EESG  AV  EEND FWG DD+PVE K
Sbjct: 77  RKVEYLYTLVLRALEFLSQKRQQDHKDGPSVQPEESGPCAVTDEENDQFWGLDDIPVEEK 136

Query: 144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTY 203
           N LD   GK+ +L  F+KPPANLVVLEGDCLD  GDG ELES+LL+T+DLY+DFILLDT 
Sbjct: 137 NSLDGTTGKEVNLEHFIKPPANLVVLEGDCLDAGGDGGELESFLLSTTDLYQDFILLDTS 196

Query: 204 DSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPR 263
           D+VAV +FL+G +     ND  RG+S RKSF SP   +GG+A + S AKN+  N   +P+
Sbjct: 197 DAVAVHEFLKGSKAATTQNDANRGTSARKSFHSPG-HTGGSARRLSAAKNQGAN-NCTPK 254

Query: 264 VACGFD---VGPNPPVNDNFGENYHGFDMDDNYSEPR-DFDNSDDEDDPWKPLNPHEPGN 319
           + CGFD   V P+ P +    +  +GFDMD      R   ++ +D DDPWKPLNPHEPGN
Sbjct: 255 LNCGFDDENVRPSSPASAGLDDFNYGFDMDHGCDASRDSDNSDEDNDDPWKPLNPHEPGN 314

Query: 320 LKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQ 379
           L+VKPFRK+ T ++N +   + +S++T+FPLAKL G ISPEL E+WE RH   E QR S 
Sbjct: 315 LRVKPFRKLNTLKKNSINVRQPVSMNTLFPLAKLHGPISPELMEMWEMRHHVHERQRDSL 374

Query: 380 PPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPL 439
              LYEKLRQSL +EG++T   F N     +   D  + D G+PDFD PD  YM+ED+P 
Sbjct: 375 -ALLYEKLRQSLVNEGNKTGGTFFN----SEADNDDNEYDGGNPDFDTPDNAYMEEDLPP 429

Query: 440 QHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSW 499
             ++H+   A   P+EA +     S A+LEDLCRSHL+ALLA+IAETEKQTE+AARVS+W
Sbjct: 430 FSNEHEFDDAHINPDEAVDL----SQASLEDLCRSHLNALLASIAETEKQTEMAARVSTW 485

Query: 500 KQKIENNLDEQVTY 513
           KQ+IENNL+EQ ++
Sbjct: 486 KQRIENNLEEQESH 499

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532557|ref|XP_003534838.1| PREDICTED: condensin-2 complex subunit H2-like [Glycine max]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/491 (57%), Positives = 352/491 (71%), Gaps = 17/491 (3%)

Query: 24  TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYS 83
            V  ER+L++NWEV+LAKKLE+YLLKICSG++T  E   S  VNFAEAALL+QGS+QVYS
Sbjct: 18  AVHAERDLESNWEVNLAKKLEEYLLKICSGEITGEEEGHS-PVNFAEAALLLQGSMQVYS 76

Query: 84  RKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK 143
           RKVEYLY LVL  LEF+SQK  QD I+G  VQ EESG  AV  EEND FWG DD+PVE K
Sbjct: 77  RKVEYLYTLVLRALEFLSQKRNQDHIDGASVQPEESGPRAVTDEENDQFWGLDDIPVEEK 136

Query: 144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTY 203
           N LD+  GK  +L+ F+KPPANLVVLEGDCLD  GDG ELES+LL+T+DLY+DFILLDT 
Sbjct: 137 NSLDATTGK-VNLDHFIKPPANLVVLEGDCLDAGGDGGELESFLLSTTDLYQDFILLDTS 195

Query: 204 DSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNKDVNLPASPR 263
           D++AV +FL+  +     ND  RG+S RKSF SP   +GG+A + S AK++  N   SP+
Sbjct: 196 DAIAVHEFLKSSKAATTQNDANRGTSARKSFLSPG-HTGGSARRLSAAKSQGAN-NCSPK 253

Query: 264 VACGF---DVGPNPPVNDNFGENYHGFDMDDNYSEPR-DFDNSDDEDDPWKPLNPHEPGN 319
           + CGF   +V  + P +    +  +GFDMD      R   ++ +D DDPWKPLNPHEPGN
Sbjct: 254 LNCGFNDENVRSSSPASAGLDDFNYGFDMDHGCDASRDSDNSDEDNDDPWKPLNPHEPGN 313

Query: 320 LKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQ 379
           L+VKPFRKV T ++N +     +S++T+FPLAKLRG ISPEL E+WE RH   E QR SQ
Sbjct: 314 LRVKPFRKVNTLKKNSINVRLPVSMNTLFPLAKLRGPISPELMEMWEMRHLVHERQRDSQ 373

Query: 380 PPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPL 439
            P LYEKLRQSL +EG+ET   F N     +   D  + D G+PDFDMPD  YM+ED+P 
Sbjct: 374 AP-LYEKLRQSLVNEGNETGGTFFN----SEADNDDNEYDGGNPDFDMPDNAYMEEDLPS 428

Query: 440 QHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSW 499
             ++H+   A   P+EA +     S  +LEDLCRSHL+ALLA+IAETEKQTE+A RVS+W
Sbjct: 429 FSNEHEFDDAHVNPDEAVDL----SQTSLEDLCRSHLNALLASIAETEKQTEMATRVSAW 484

Query: 500 KQKIENNLDEQ 510
           KQKIE+NL+EQ
Sbjct: 485 KQKIEDNLEEQ 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834564|ref|XP_002885164.1| hypothetical protein ARALYDRAFT_897993 [Arabidopsis lyrata subsp. lyrata] gi|297331004|gb|EFH61423.1| hypothetical protein ARALYDRAFT_897993 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/511 (56%), Positives = 353/511 (69%), Gaps = 27/511 (5%)

Query: 17  GGSDVR----FTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAA 72
           GG  VR     TVQPER+L ANWEVDL++KLE+YLLKICSG++T +E  + I VNFAEAA
Sbjct: 5   GGGGVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDEQIPVNFAEAA 64

Query: 73  LLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFF 132
           LL+QGSVQVYS+KVEYLYNLVL TLEF+S++  Q+Q +GT  +AE S S  V  EEND F
Sbjct: 65  LLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNEAEASSSRQVDEEENDLF 124

Query: 133 WGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSD 192
           W  DD+PV+ KN LDS  G DT  + FVKPPANLVVLEGDCLDT GDG ELESYLLAT+ 
Sbjct: 125 WNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTH 184

Query: 193 LYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAK 252
           LYRDFILLD  D+VAV++FL  D   KG N+ +RGSS RKSF S   RSGG+A KSS+ K
Sbjct: 185 LYRDFILLDPCDAVAVNEFLGDDYAGKGKNNAHRGSSVRKSFHSSVGRSGGSARKSSVGK 244

Query: 253 NKDVNLPASPRVACG-----FDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSD-DED 306
           N+  N+  SP    G      D G  PPV   FG+N HGFDMD+ Y    DF ++D DED
Sbjct: 245 NQGTNVNLSPIGGNGPNVQNCDQGSQPPV---FGDNDHGFDMDNEYGGTMDFSDTDADED 301

Query: 307 DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
           DPWKPLNP+EPG LKVKPF+KVK F++ G  S  +  ++++FPLA+  G IS EL  IW+
Sbjct: 302 DPWKPLNPYEPGKLKVKPFKKVKNFKKIGW-SITKDHMTSMFPLARPDGPISSELIGIWK 360

Query: 367 ARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDP-------D 419
            R    + ++ SQ    YEKLR+ L + G++   A  N   Y+D   D+ D        D
Sbjct: 361 MRGCASKGEQESQDIPYYEKLREMLVNGGNQPCGANGN---YKDNDKDNHDEANNGDFHD 417

Query: 420 IGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL 479
            G  D D  +  +MDEDV    + +D G A F   + FE+G  +   +LEDLCRSHLDAL
Sbjct: 418 CGEHDGDDAEHPFMDEDV---LNMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDAL 474

Query: 480 LANIAETEKQTELAARVSSWKQKIENNLDEQ 510
           LANIA++EKQT+LAARVS+WKQKIE NL+EQ
Sbjct: 475 LANIAKSEKQTDLAARVSTWKQKIEQNLEEQ 505

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338603|ref|NP_188295.2| condensin-2 complex subunit H2 [Arabidopsis thaliana] gi|75274279|sp|Q9LUR0.1|CNDH2_ARATH RecName: Full=Condensin-2 complex subunit H2; AltName: Full=Chromosome-associated protein H2; Short=AtCAP-H2; AltName: Full=Non-SMC condensin II complex subunit H2; AltName: Full=Protein HYPERSENSITIVE TO EXCESS BORON 2; Short=Hypersensitive to excess B 2 gi|11994628|dbj|BAB02765.1| unnamed protein product [Arabidopsis thaliana] gi|62533249|dbj|BAD95574.1| chromosoma associate protein subunit H2 [Arabidopsis thaliana] gi|110741945|dbj|BAE98913.1| hypothetical protein [Arabidopsis thaliana] gi|332642337|gb|AEE75858.1| condensin-2 complex subunit H2 [Arabidopsis thaliana]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/511 (55%), Positives = 350/511 (68%), Gaps = 27/511 (5%)

Query: 17  GGSDVR----FTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAA 72
           GG +VR     TVQPER+L ANWEVDL++KLE+YLLKICSG++T +E    I VNFAEAA
Sbjct: 5   GGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAA 64

Query: 73  LLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFF 132
           LL+QGSVQVYS+KVEYLYNLVL TLEF+S++  Q+Q +GT  + E S S  V  EEND F
Sbjct: 65  LLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLF 124

Query: 133 WGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSD 192
           W  DD+PV+ KN LDS  G DT  + FVKPPANLVVLEGDCLDT GDG ELESYLLAT+ 
Sbjct: 125 WNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTH 184

Query: 193 LYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAK 252
           LYRDFILLD  D+VAV++FL  +   KG N  +RGSS RKSF S   RSGG+A KSS+ K
Sbjct: 185 LYRDFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGK 244

Query: 253 NKDVNLPASPRVACG-----FDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSD-DED 306
           N+  N+  SP    G      D G  PPV   F +N HGFDMD+ Y    DF ++D DED
Sbjct: 245 NQGTNVHLSPICGNGPNDQNCDQGSQPPV---FEDNDHGFDMDNEYGGAMDFSDTDADED 301

Query: 307 DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
           DPWKPLNP+EPG LKVKPF+KVK  ++ G  S  +  ++++FPLA+  G IS EL EIW+
Sbjct: 302 DPWKPLNPYEPGKLKVKPFKKVKILKKIGW-SITKDHMTSMFPLARPNGPISSELIEIWK 360

Query: 367 ARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSGDP-------D 419
                 ++++ASQ    YEKLR+ L + G++   A  N   Y D   D+ D        D
Sbjct: 361 MHGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGN---YNDNDKDNHDEANNGDFHD 417

Query: 420 IGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL 479
            G  D D  +  +MDEDV    + +D G A F   + FE+G  +   +LEDLCRSHLDAL
Sbjct: 418 FGEHDGDDAEHPFMDEDVL---NMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDAL 474

Query: 480 LANIAETEKQTELAARVSSWKQKIENNLDEQ 510
           LANIA++EKQT+LAARVS+WKQKIE NL+EQ
Sbjct: 475 LANIAKSEKQTDLAARVSTWKQKIEQNLEEQ 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083331|emb|CBI22967.3| unnamed protein product [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 300/580 (51%), Positives = 350/580 (60%), Gaps = 108/580 (18%)

Query: 12   VEAAAGGSDVRF-TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAE 70
             E  +G  +  F TVQP R+L++NW VDLAK LE+YLLKICSG+++ +   D  +VNFAE
Sbjct: 553  AEDLSGDRNASFHTVQPLRDLESNWSVDLAKNLEEYLLKICSGEISGN---DGRNVNFAE 609

Query: 71   AALLVQGSVQVYSRKVEYLYNLVL------------------------------HTLEFI 100
            AALL+QGS+QVYSRKVEYLY LVL                              HTL  +
Sbjct: 610  AALLLQGSIQVYSRKVEYLYTLVLHALEFVSHTRGKLKGPATCRMEGIKVEREVHTLTIV 669

Query: 101  SQK-------------------------SQQDQIEGTPVQAEESGSHAVAGEENDFFWGF 135
                                         QQDQ+E TP+Q EE GSH V  EE+D FW  
Sbjct: 670  ETVPCSTYCLFAPATCGAPCKIYPHLLLKQQDQLERTPIQHEEGGSHVVPDEEDDLFWCL 729

Query: 136  DDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYR 195
            DDVPVE +NCLDS   KD SLN FVK PANLVVLEGD     GDG EL+SYLLAT+DLYR
Sbjct: 730  DDVPVEPRNCLDSTTSKDASLNQFVKAPANLVVLEGD---ATGDGGELDSYLLATNDLYR 786

Query: 196  DFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSS----TRKSFQSPTRRSGGTAHKSSLA 251
            DFILLD  D+VAVD FL+GD+  KG N  Y+  S    + KSFQSP+RRSGGTAH+S   
Sbjct: 787  DFILLDPCDAVAVDSFLKGDKDSKGLNGDYKSGSLNSKSCKSFQSPSRRSGGTAHRSHGK 846

Query: 252  KNKDVNLPASPRVACGF-----DVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDED 306
             N +      P V C F      +GP PP  D   EN  G           D D+ DD D
Sbjct: 847  SNLN-----EPWVDCSFAANEGKIGPEPPAFD-IAENNDGHTDHAGLDNSDDDDDDDDND 900

Query: 307  DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
            DPWKPLNPHE GNLKVKPF+KVK FRR+GV S K   ++T FPLAK+ G ISPELTEIWE
Sbjct: 901  DPWKPLNPHEAGNLKVKPFKKVKAFRRHGVCSTKHNILTTQFPLAKMHGPISPELTEIWE 960

Query: 367  ARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFAN-PGCYEDKGYDSGDPDIGHPDF 425
             +H+  E Q+  Q P LYEKLR SL     +TF A++N     ED GYDSG  D G    
Sbjct: 961  -KHRACERQQEPQTPPLYEKLRNSLIHGDSQTFSAYSNVEDNKEDGGYDSGVNDFGD--- 1016

Query: 426  DMPDGMYMDEDVPLQHDK---------------HDDGPAPFEPNEAFEHGSQDSHANLED 470
            +MP  MYMD+D+PL  ++               HDDG A F           DS  NLED
Sbjct: 1017 EMPHDMYMDDDLPLHQEQVRLPVLMCQEQNIMHHDDGAACF-----------DSIDNLED 1065

Query: 471  LCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQ 510
            LCRSHLDALLANIAETEKQTELAARVS+WKQKIE++L+EQ
Sbjct: 1066 LCRSHLDALLANIAETEKQTELAARVSTWKQKIEHDLEEQ 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454331|ref|XP_004144909.1| PREDICTED: condensin-2 complex subunit H2-like [Cucumis sativus]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/491 (50%), Positives = 333/491 (67%), Gaps = 32/491 (6%)

Query: 25  VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSR 84
           +QPER+L+ NWEVDLA+ LE YLL+ICSG+  + E  ++ +VNFAEAALL+QGS+QVYSR
Sbjct: 14  LQPERDLRLNWEVDLAQNLERYLLQICSGEFQSDED-ENHTVNFAEAALLLQGSIQVYSR 72

Query: 85  KVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKN 144
           KVEYLY+LVL  LEF+S++ QQ  +EG  ++AE++GSH +   END +W  +DVPV+ KN
Sbjct: 73  KVEYLYSLVLRALEFLSERRQQHHLEGNSIEAEQNGSHKIDEGENDLYWVSEDVPVDPKN 132

Query: 145 CLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLAT-SDLYRDFILLDTY 203
            LDS   +D  LN  VKPPANL+VLEGDCLD+  +G EL+SYLLAT S++++DFILLD+ 
Sbjct: 133 TLDSTK-EDVWLNQTVKPPANLIVLEGDCLDSSDNG-ELDSYLLATASNIFQDFILLDSS 190

Query: 204 DSVAVDDFL-EGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAKNK--DVNLPA 260
           D    +DF+ E ++  K  N   RGSSTR+S QS +     T  +SS  K +  D     
Sbjct: 191 DVKTFEDFMNENNKFGKSHNSARRGSSTRRSCQSQS-----TMQRSSFGKTQVGDHAAAQ 245

Query: 261 SPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNL 320
           SP V+  F       V+D  G            SE  D +  +D+DD WKPLNPHEPGNL
Sbjct: 246 SPLVSGSF-------VHDPLGN-----------SESDDSNGCEDDDDFWKPLNPHEPGNL 287

Query: 321 KVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQP 380
           K+KPFRKVK F++N  KS K   +  +FP+AKL G +S E  +IWE +++ FE  + S+ 
Sbjct: 288 KIKPFRKVKAFKKNYKKSGKHEFLIALFPMAKLHGPVSQEFAQIWEEQNQGFEAHKESKS 347

Query: 381 PSLYEKLRQSLADEGHETFDAFAN-PGCYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPL 439
             LYEKLR SL +EGH++ D+ ++      D G++   PD+ HPD   P+  +MDE +  
Sbjct: 348 VLLYEKLRNSLINEGHKSCDSLSDMEDDNIDNGFEDAMPDVNHPDIGDPNDHFMDEAMCF 407

Query: 440 QHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLANIAETEKQTELAARVSSW 499
            ++KHD   A F+  EA+E    DS ++LEDLCRSHLDALLA+IAE+EKQTE+A RVS+W
Sbjct: 408 GNEKHDVA-AHFDNGEAYEPEFPDSRSSLEDLCRSHLDALLASIAESEKQTEMATRVSTW 466

Query: 500 KQKIENNLDEQ 510
           KQ IE+NL++Q
Sbjct: 467 KQNIEHNLEDQ 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:2089298	683	HEB2 "hypersensitive to excess	0.822	0.711	0.559	4.7e-135
UNIPROTKB|Q6IBW4	605	NCAPH2 "Condensin-2 complex su	0.228	0.223	0.401	6.7e-20
ZFIN|ZDB-GENE-041210-172	592	ncaph2 "non-SMC condensin II c	0.766	0.765	0.266	9.8e-20
MGI|MGI:1289164	607	Ncaph2 "non-SMC condensin II c	0.238	0.232	0.410	3e-19
UNIPROTKB|Q3SZL8	622	NCAPH2 "Condensin-2 complex su	0.197	0.188	0.418	2.8e-17
RGD|1565937	554	Ncaph2 "non-SMC condensin II c	0.446	0.476	0.264	1.2e-11
WB|WBGene00016202	821	kle-2 [Caenorhabditis elegans	0.159	0.114	0.285	0.00014
UNIPROTKB|P34341	821	kle-2 "Kleisin, abnormal closu	0.159	0.114	0.285	0.00014

TAIR|locus:2089298 HEB2 "hypersensitive to excess boron 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 285/509 (55%), Positives = 352/509 (69%)

Query:    17 GGSDVR----FTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAA 72
             GG +VR     TVQPER+L ANWEVDL++KLE+YLLKICSG++T +E    I VNFAEAA
Sbjct:     5 GGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNFAEAA 64

Query:    73 LLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFF 132
             LL+QGSVQVYS+KVEYLYNLVL TLEF+S++  Q+Q +GT  + E S S  V  EEND F
Sbjct:    65 LLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEENDLF 124

Query:   133 WGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSD 192
             W  DD+PV+ KN LDS  G DT  + FVKPPANLVVLEGDCLDT GDG ELESYLLAT+ 
Sbjct:   125 WNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLLATTH 184

Query:   193 LYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSLAK 252
             LYRDFILLD  D+VAV++FL  +   KG N  +RGSS RKSF S   RSGG+A KSS+ K
Sbjct:   185 LYRDFILLDPCDAVAVNEFLGDNYGGKGRNSAHRGSSVRKSFHSSVGRSGGSARKSSVGK 244

Query:   253 NKDVNLPASPRVACG-----FDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSD-DED 306
             N+  N+  SP    G      D G  PPV   F +N HGFDMD+ Y    DF ++D DED
Sbjct:   245 NQGTNVHLSPICGNGPNDQNCDQGSQPPV---FEDNDHGFDMDNEYGGAMDFSDTDADED 301

Query:   307 DPWKPLNPHEPGNLKVKPFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWE 366
             DPWKPLNP+EPG LKVKPF+KVK  ++ G    K   ++++FPLA+  G IS EL EIW+
Sbjct:   302 DPWKPLNPYEPGKLKVKPFKKVKILKKIGWSITKD-HMTSMFPLARPNGPISSELIEIWK 360

Query:   367 ARHKCF-EEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYD---SGD-PDIG 421
               H C  ++++ASQ    YEKLR+ L + G++   A  N    +   +D   +GD  D G
Sbjct:   361 M-HGCASKDEQASQDIPYYEKLREMLVNGGNQPCGANGNYNDNDKDNHDEANNGDFHDFG 419

Query:   422 HPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDALLA 481
               D D  +  +MDEDV    + +D G A F   + FE+G  +   +LEDLCRSHLDALLA
Sbjct:   420 EHDGDDAEHPFMDEDVL---NMNDGGAAEFHNYDGFENGESNCQESLEDLCRSHLDALLA 476

Query:   482 NIAETEKQTELAARVSSWKQKIENNLDEQ 510
             NIA++EKQT+LAARVS+WKQKIE NL+EQ
Sbjct:   477 NIAKSEKQTDLAARVSTWKQKIEQNLEEQ 505

GO:0005634 "nucleus" evidence=ISM

GO:0000793 "condensed chromosome" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=IMP

UNIPROTKB|Q6IBW4 NCAPH2 "Condensin-2 complex subunit H2" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
 Identities = 59/147 (40%), Positives = 83/147 (56%)

Query:    20 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
             + RF   +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QG
Sbjct:     5 EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62

Query:    78 SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAG----EENDFFW 133
             S  VYS+KVEYLY+LV   L+FIS K +  Q+    VQ + +   A +G     EN+F  
Sbjct:    63 SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSS--VQEDRANGVASSGVPQEAENEFL- 119

Query:   134 GFDDVPVEVKNCLDSPNGKDTSLNLFV 160
               DD P    N +D  N +  S  L +
Sbjct:   120 SLDDFPDSRTN-VDLKNDQTPSEVLII 145

GO:0030261 "chromosome condensation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

ZFIN|ZDB-GENE-041210-172 ncaph2 "non-SMC condensin II complex, subunit H2" [Danio rerio (taxid:7955)]

 Score = 265 (98.3 bits), Expect = 9.8e-20, P = 9.8e-20
 Identities = 138/517 (26%), Positives = 213/517 (41%)

Query:    25 VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSR 84
             +QP R+L  NW++DLA +L +YL ++   Q+T S       +NFAEAALL+QGS  +Y R
Sbjct:    12 LQPLRDLTKNWDIDLASQLGEYLEEL--DQMTISFDGGKTMMNFAEAALLIQGSTCIYGR 69

Query:    85 KVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVKN 144
             KVE L+ LV  TL++IS K+++   +G+   ++ +   A +G E D    FD++  +   
Sbjct:    70 KVELLHTLVFQTLDYISNKNKKRDKQGS--SSDGNQEQAPSGSEGDGC-EFDEIEQDENV 126

Query:   145 CLDSPNGKDTS--LNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDT 202
                +   KD +  + +   PP +L+  E            L+  LL +   +R  I   T
Sbjct:   127 NTHNITMKDPTEPVRIIRLPPESLIPAESHEKQKY-PLLSLKGELLGSCKDFR--INTFT 183

Query:   203 YDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSG-GTAHKSSLAKNKDVNLPAS 261
              D   +          KG  +V R  S       P +  G   A      +  D      
Sbjct:   184 MDEAGLMRLGSNTHFLKGVAEVQRDFSVH--LPEPLQIEGEAAAANGGYDEEVDGGAEVL 241

Query:   262 PRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDED--------DPWKPLN 313
             P +    D G     +D + E  H    +     PR       E+        DPWK  +
Sbjct:   242 PPLE---DHGMEVE-SDEWVER-HEAPSEGRMLRPRPAVQPVSEEPKQLKETVDPWKLHD 296

Query:   314 PHEPGNLKVKPFRKVKTFR------RNGVKSAKRIS----ISTIFPLA------KLR-GT 356
             P+     + KP +  K ++       +G +  K  S      T F  A      KL+ G 
Sbjct:   297 PYATFG-EDKPLKAGKCYKVPAGLDESGKRKRKGPSKLQDFGTWFNKAFETADRKLKNGP 355

Query:   357 ISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPGCYEDKGYDSG 416
               P+L  I+ ++     +QR      +  K    ++DE  E    +  P   ED+     
Sbjct:   356 TFPDLNYIFVSKM----DQRLKVQRQMLRKRGVFVSDE--ELKKTYLEPENVEDQV---- 405

Query:   417 DPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHAN---LEDLCR 473
                I HPD D  D  Y DE+    HD   D   P E  +  E   QD H +    EDL +
Sbjct:   406 -EVIRHPDADGDD--YSDEE----HDNLADDLEPAEHLDDQEQIFQDLHMSRMSYEDLVK 458

Query:   474 SHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQ 510
               +D  L N  +  ++T L+ RV  W+  I  +L  Q
Sbjct:   459 KSVDLFLVNSQKYAQETALSRRVKDWEDSINPHLAAQ 495

GO:0030261 "chromosome condensation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1289164 Ncaph2 "non-SMC condensin II complex, subunit H2" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 64/156 (41%), Positives = 88/156 (56%)

Query:    20 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
             +VRF   +QP R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QG
Sbjct:     5 EVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEEL--DQICISFDEGKTTMNFIEAALLIQG 62

Query:    78 SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEES----GSHAVAGEENDFFW 133
             S  VYS+KVEYLY+LV   L+FIS K +  Q+  + VQ + S     S      EN+F  
Sbjct:    63 SACVYSKKVEYLYSLVYQALDFISGKRRAKQL--SLVQEDGSKKTVNSETPCETENEFL- 119

Query:   134 GFDDVPVEVKNCLDSPNGKDTSLNLFVKP--PANLV 167
               DD P    N +D  N + +S  L + P  P  LV
Sbjct:   120 SLDDFPDSRAN-VDLKNDQASS-ELLIIPLLPMALV 153

GO:0005634 "nucleus" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IMP

UNIPROTKB|Q3SZL8 NCAPH2 "Condensin-2 complex subunit H2" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 51/122 (41%), Positives = 72/122 (59%)

Query:    20 DVRFT--VQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQG 77
             + RF   + P R+L  NWEVD+A +L +YL ++   Q+  S      ++NF EAALL+QG
Sbjct:     5 EARFAHLLLPIRDLTRNWEVDVAAQLGEYLEEL--DQICISFDKGKTTMNFIEAALLIQG 62

Query:    78 SVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDF-FWGFD 136
             S  VYS+KVEYLY+LV   L+FIS K Q  Q+  TP       + + A +E +  F   D
Sbjct:    63 SACVYSKKVEYLYSLVYQALDFISGKKQAKQLSSTPEDGTIGDASSRAPQEAEQKFRALD 122

Query:   137 DV 138
             D+
Sbjct:   123 DL 124

GO:0005634 "nucleus" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

RGD|1565937 Ncaph2 "non-SMC condensin II complex, subunit H2" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 78/295 (26%), Positives = 129/295 (43%)

Query:    66 VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAV- 124
             +NF EAALL+QGS  VYS+KVEYLY+LV   L+FIS K +  Q+  + VQ E+  + AV 
Sbjct:     1 MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQL--SLVQ-EDGSNRAVN 57

Query:   125 AG---EENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGT 181
             +G   E  D F   DD P    N +D  N + +S  L + P   + ++  D ++   +  
Sbjct:    58 SGTPCETEDEFLSLDDFPDSRAN-VDLKNDQASS-ELLIIPLLPMALVAPDEVEKSSNPL 115

Query:   182 -ELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCK-GPNDVYRGSSTRKSFQSPTR 239
                +  +LA+    +DF +            L+   +C   P DV+    ++K  +    
Sbjct:   116 YSCQGEVLASR---KDFRMNTCTPDPRGSFMLDPVGMCPVEPVDVHPMPRSQKDAEEAEE 172

Query:   240 RSGGTAHKSSLAKNKDVNL-PASPRVACGF----DVGPNP-----PVNDNFGENY----H 285
             +    +   S    + ++  P  P ++ G     DV   P     P      +       
Sbjct:   173 QPMAVSRNGSPVSVRSISQEPDGPALSSGDEDAEDVAELPEVALEPAEPRTSQQTAILPR 232

Query:   286 GFDMDDNYSEPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFR-RNGVKSA 339
              + + +    P       +  DPW+ L+P +  +L  K F+K K +    GV+ A
Sbjct:   233 RYMLRERQGAPEPASQPQETPDPWQSLDPFD--SLDSKLFQKGKPYSVPPGVEEA 285

GO:0005634 "nucleus" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=ISO

WB|WBGene00016202 kle-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 129 (50.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 28/98 (28%), Positives = 50/98 (51%)

Query:    19 SDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISV----NFAEAALL 74
             +D+ + V P ++L  N+ +D+ K L  YL  I          +D+ +     +F  A  +
Sbjct:    12 TDLAWLVTPAKDLVENFSIDVLKALAGYLEVIRQESEDTDNQVDAATTYRLFDFQRACRI 71

Query:    75 VQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGT 112
             +QGS  VY RKV+++Y L +  ++ +  K Q D   G+
Sbjct:    72 IQGSCAVYGRKVDHVYELTISVVDLVENKGQDDGNTGS 109

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

UNIPROTKB|P34341 kle-2 "Kleisin, abnormal closure, protein 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 129 (50.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 28/98 (28%), Positives = 50/98 (51%)

Query:    19 SDVRFTVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISV----NFAEAALL 74
             +D+ + V P ++L  N+ +D+ K L  YL  I          +D+ +     +F  A  +
Sbjct:    12 TDLAWLVTPAKDLVENFSIDVLKALAGYLEVIRQESEDTDNQVDAATTYRLFDFQRACRI 71

Query:    75 VQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGT 112
             +QGS  VY RKV+++Y L +  ++ +  K Q D   G+
Sbjct:    72 IQGSCAVYGRKVDHVYELTISVVDLVENKGQDDGNTGS 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUR0	CNDH2_ARATH	No assigned EC number	0.5557	0.8189	0.7086	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00770086 hypothetical protein (645 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
pfam06278	565	pfam06278, DUF1032, Protein of unknown function (D	1e-14

>gnl|CDD|218970 pfam06278, DUF1032, Protein of unknown function (DUF1032)

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 4/104 (3%)

Query: 66  VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAE-ESGSHAV 124
           +NFAEAALL+QGS  +YS+KVEYLY+LV   L+FIS K +  Q+         +  + A 
Sbjct: 1   MNFAEAALLIQGSACIYSKKVEYLYSLVYQALDFISNKKRAKQLSSVSEDGNQKDATSAP 60

Query: 125 AGEENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVK-PPANLV 167
           +  E +F    DD+  + +  +D  + + TS  L +   P  LV
Sbjct: 61  SESEGEFL-SLDDIE-DSEANVDLKDDQITSPVLIIPLLPMALV 102

This family consists of several conserved eukaryotic proteins of unknown function. Length = 565

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
PF06278	565	DUF1032: Protein of unknown function (DUF1032); In	100.0
KOG2359	688	consensus Uncharacterized conserved protein [Funct	100.0
KOG2359	688	consensus Uncharacterized conserved protein [Funct	99.95
PF04825	111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	93.23
PF05786	725	Cnd2: Condensin complex subunit 2; InterPro: IPR02	92.74
KOG1213	614	consensus Sister chromatid cohesion complex Cohesi	81.96

>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2

Probab=100.00  E-value=3.5e-99  Score=820.88  Aligned_cols=445  Identities=27%  Similarity=0.369  Sum_probs=337.2

Q ss_pred             ccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccccCCCCcccccCC--CCCcCCCCCCcccccCCCccccc
Q 007729           66 VNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESG--SHAVAGEENDFFWGFDDVPVEVK  143 (591)
Q Consensus        66 ~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~e~ed~f~~lDd~~~~~~  143 (591)
                      |||||||||||||||||||||||||+||||+|+||++||++++.  ++++.+|.+  ...++.+++++|++|||++.+ +
T Consensus         1 ~nFaEAalliQgsa~vYskKVeyly~lv~~~l~~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~ldd~~~~-~   77 (565)
T PF06278_consen    1 MNFAEAALLIQGSACVYSKKVEYLYSLVYQALDFLSGKKRAKQN--SSSQEDGEDGDANSAPQEDEDDFLSLDDLPEE-R   77 (565)
T ss_pred             CCHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCcccccccccCcccccccccCcccCchh-h
Confidence            79999999999999999999999999999999999999988765  567776765  334677889999999999976 7


Q ss_pred             ccccCCCCCC-CccccccCCCccceeccCcccccCCCCCcccchhhhcccc----cCCceeccCCCCccccccccCcccc
Q 007729          144 NCLDSPNGKD-TSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDL----YRDFILLDTYDSVAVDDFLEGDEVC  218 (591)
Q Consensus       144 ~~idl~~~~~-~~~~~~~~pP~~L~~~Egd~~~~~~e~~el~s~LLat~~~----~kDFrLlntc~~~a~~~Fll~~~~~  218 (591)
                      .+||++.++. ..+.+++++||+|++++        +.++++.+|++.+|=    ++||| ||||++|+.|+|||+    
T Consensus        78 ~~i~l~~~~~~~~~~~~~~~p~~l~~~~--------~~ek~~~~l~s~~ge~lgsr~DFr-mNt~~~H~sGalLLd----  144 (565)
T PF06278_consen   78 NNIDLKDDQQPKETLIVPLLPMALVPPE--------EFEKNNVPLYSRKGEVLGSRKDFR-MNTCTPHPSGALLLD----  144 (565)
T ss_pred             cccccccccccccccccccCchhhccch--------hhccccCcccccCCCccCCcccee-eeecccCCCcceeec----
Confidence            7999999865 67788999999999999        889999888443321    39999 999999999999999    


Q ss_pred             CCCCCCCCCCCCcccccCCCcCCCCC----CcccccccccCCCCCCCCCcccCCCC--------CCCCCCCC----CCCC
Q 007729          219 KGPNDVYRGSSTRKSFQSPTRRSGGT----AHKSSLAKNKDVNLPASPRVACGFDV--------GPNPPVND----NFGE  282 (591)
Q Consensus       219 ~~~~~~~r~ss~r~~~~sp~~~sg~~----~~~~~~~k~~~~~~~~~~~~~c~~~~--------g~~pp~~~----~~~~  282 (591)
                                   +++.++++.....    .+..........++|.  ++.|+-++        +++.+++.    +.++
T Consensus       145 -------------~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~m~--vs~~~~P~~~l~~s~e~~e~~~~~g~~~dD~d  209 (565)
T PF06278_consen  145 -------------LSGKSPLDQFVPRPRPSSPQQKDIDQAENQPME--VSDCGSPVPVLNFSDEEDEDPAPNGGGDDDAD  209 (565)
T ss_pred             -------------cccCccccccccccccCcccccccccccCCCcc--cccCCCCCccccccccccCCCCCCCCcccccc
Confidence                         5555555542211    1111111112244455  55554222        12222211    1111


Q ss_pred             CC-C-------CCCCCCC-C-------CCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc-
Q 007729          283 NY-H-------GFDMDDN-Y-------SEPR-------------DFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFR-  332 (591)
Q Consensus       283 ~~-~-------g~d~e~~-~-------~~p~-------------~~~~~~d~~DPWk~LDPHepg~l~~KPFKKgk~y~-  332 (591)
                      ++ .       +..++.. +       ..++             .+...++++|||++||||++.  ++|||||||||+ 
T Consensus       210 ~~~e~p~~~~~~~~~e~~e~~~~~~~~~~~r~~~lR~r~~~a~~~~~~~ke~~DPW~~LDP~~~~--~~kPfKkGk~y~v  287 (565)
T PF06278_consen  210 DGAELPEAEDPEIPLEPDEPREPQQSVSEPRRYQLRERVQPAPEPASRQKETPDPWQLLDPHDSL--EDKPFKKGKPYRV  287 (565)
T ss_pred             cccccccccccCCCCCCCCCCccccccccchhcchhhcccCCCcccccccCCCCcccccCccccC--CccccccCCCCcC
Confidence            11 0       0111111 1       1111             234678899999999999988  899999999998 


Q ss_pred             -----------ccCCCCccccccccc----------ccccccCCCCchhHHHHHHHHHH-HHhhhhccCCchHHHHHHHH
Q 007729          333 -----------RNGVKSAKRISISTI----------FPLAKLRGTISPELTEIWEARHK-CFEEQRASQPPSLYEKLRQS  390 (591)
Q Consensus       333 -----------Rk~k~a~kl~~~~~~----------fp~~r~~Gptf~dle~i~~~~~~-q~e~~r~sq~~~l~EKLrr~  390 (591)
                                 ||||++.|+++|++|          .++.+++||+|+||+||||++++ |++++|         |++|+
T Consensus       288 P~~~~~~~~~KRKrK~~~kLqd~~~~~~~~~~~~~~~~r~~~kgp~faDle~Ly~k~ik~rl~~~r---------kl~rr  358 (565)
T PF06278_consen  288 PPGLEEASGQKRKRKGPSKLQDFSSWFLAAYISHSDQRRSRRKGPTFADLEYLYWKEIKERLEAQR---------KLQRR  358 (565)
T ss_pred             CcchhhccchhhhccccccCCCHHHHHHHHHhccCccccccccCCcccchHHHHHHHHHHHHHHHH---------HHHHH
Confidence                       788888999999999          67778999999999999999998 889999         99888


Q ss_pred             hhccCCCCcccc-------CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccCCCC
Q 007729          391 LADEGHETFDAF-------ANPG-CYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQ  462 (591)
Q Consensus       391 l~~~~~~~~~~f-------~~le-~~Ed~~~dgg~dDF~~~d~D~p~d~~~D~d~p~~~~e~~~g~~~~~~~da~~~~d~  462 (591)
                      ...+.|++....       .+.+ +.|   .+|+++||.+++      +++++..+....+..     +.+.+   ...+
T Consensus       359 ~~~~~~l~~~~e~~~~~E~e~~eD~le---d~g~~dD~~d~e------~~~e~~~~~~~~e~~-----~~d~~---~~~~  421 (565)
T PF06278_consen  359 NIAERLLPDAEEERWPLEDENDEDSLE---DDGDADDFLDPE------DDVEDPEGMDPEEDA-----IDDLE---AESM  421 (565)
T ss_pred             HhhhhcCCchhhccCcccccccccccc---cccccccccccc------cccccccccCccccc-----ccccc---cccC
Confidence            887777754111       1112 223   367778888766      233211122222211     11122   2346


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccccccceEehhh
Q 007729          463 DSHANLEDLCRSHLDALLANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFK  542 (591)
Q Consensus       463 ~~~~SYEdLcR~hve~~~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g~~~~f~~  542 (591)
                      +.++|||||||+||++||+++++|++||+|++||++|++||+|+|+|||+|  ++||||.||++||++|..+|++++|++
T Consensus       422 ~~~~syEdL~r~~v~~~~~~~~~~~~et~L~~rV~~W~~~i~P~L~e~e~r--~~FdIh~yg~~ii~~~~~~~~~~~f~~  499 (565)
T PF06278_consen  422 PDQLSYEDLCRSHVEAFIASSQKYEQETELSKRVRDWEEKIEPILEEQEQR--PPFDIHDYGDRIIERFSEVGEKATFAD  499 (565)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHHhhcCCeeeHHH
Confidence            678999999999999999999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             hhcCCcceeeehhhHhhhHHHHHhcccceEEE
Q 007729          543 LVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLI  574 (591)
Q Consensus       543 Lv~G~~~~EVcR~F~~~tL~l~~~~~~~~~~~  574 (591)
                      ||.|+++||||||| ||+|||+  |.+||.|-
T Consensus       500 vv~~~~~~ev~R~f-la~LqLa--N~~nv~i~  528 (565)
T PF06278_consen  500 VVEGKPPYEVCRYF-LASLQLA--NDGNVEIS  528 (565)
T ss_pred             HhCCCChhHHHHHH-HHHHHHh--cCCCeeec
Confidence            99999999999999 6777665  99999864

Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

>KOG2359 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.9e-87  Score=706.19  Aligned_cols=521  Identities=15%  Similarity=0.104  Sum_probs=441.8

Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhcccccccCCCCcccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhh
Q 007729           24 TVQPERELQANWEVDLAKKLEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQK  103 (591)
Q Consensus        24 llqPirDl~~nW~iDia~~LeeYl~~i~~~~~~~~~~~~~~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~  103 (591)
                      |+||-|||-.||+|||.+.|++||+.||+++|++++.++.+++||++||+|||||.+||||||||||+||..+++||+++
T Consensus        16 ~v~p~~dlv~n~~id~~~~l~~yl~~i~~~e~t~n~~d~~~~~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~~   95 (688)
T KOG2359|consen   16 LVTPAKDLVENFSIDVLKALAGYLEVIRQSEDTDNQVDAATTYDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVENR   95 (688)
T ss_pred             eccchHHHHhhchhhHHHHHHHHHHHHhhccccCccccccccccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcccccCC-CCCcCCCCCCcccccCCCcccccccc------------cCCCCCCCccccccCCCccceecc
Q 007729          104 SQQDQIEGTPVQAEESG-SHAVAGEENDFFWGFDDVPVEVKNCL------------DSPNGKDTSLNLFVKPPANLVVLE  170 (591)
Q Consensus       104 ~~~~~~~~~s~~~~~~~-~~~~~~e~ed~f~~lDd~~~~~~~~i------------dl~~~~~~~~~~~~~pP~~L~~~E  170 (591)
                      |.|.|..++|. .+.++ ++.+.+++.+.||..++++.+-.+..            +-+.+..+..+.+..+|.++++.+
T Consensus        96 r~~~~~kg~~n-~~~a~~~~~~~e~~~~~~~~v~~~~~qisa~~~v~nie~~~s~~~~~~~~is~p~qf~~~~~~~~~~~  174 (688)
T KOG2359|consen   96 RGAGRRKGSTN-YDLADIDSLKQEALANFEKTVKEEKKSIDAVRMVENAEVIESQYERKSCLVAKPTQFMFKLDEQILNA  174 (688)
T ss_pred             cchhccCCCCC-ccchhhhHHHHHHHhhhHhHHHHHhhccccceehhhHHHHHHHHHHHhccccCchhhhcCchhhhhcC
Confidence            98888776554 45555 44455666788999999987644331            123555567788999999999999


Q ss_pred             CcccccCCCCCcccchhhhcccccCCceeccCCCCccccccccCccccCCCCCCCCCCCCcccccCCCcCCCCCCccccc
Q 007729          171 GDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHKSSL  250 (591)
Q Consensus       171 gd~~~~~~e~~el~s~LLat~~~~kDFrLlntc~~~a~~~Fll~~~~~~~~~~~~r~ss~r~~~~sp~~~sg~~~~~~~~  250 (591)
                      ++|+|+.|.+.+..++++++.++|+||.+.+ |++++++.||+.....+..|.+|+++|.+..|++-..+++|..+..+.
T Consensus       175 ~~~~d~~g~~~d~e~~~~~~~hl~~d~~~~d-c~~~~l~~fl~~~~~~~~~N~~h~~~s~~~~f~~~vp~~~~~~~~~~v  253 (688)
T KOG2359|consen  175 KSRPDVIGKVKDFEIKKSKVKHDQQILYSHD-CYRGNLDQFTLPGARWMPDNKEHEKISAYGPFKDVVPPPRWFIEQEAV  253 (688)
T ss_pred             Cccccccccccccchhhhcchhhhhccchhh-hccccchhhccCccccCCCcccccccccccchhhccCCCCCCCcchhh
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007729          251 AKNKDVNLPASPRVACGFDV------GPNPPVNDNFGENYHGFDMDDNYSEPR-DFDNSDDEDDPWKPLNPHEPGNLKVK  323 (591)
Q Consensus       251 ~k~~~~~~~~~~~~~c~~~~------g~~pp~~~~~~~~~~g~d~e~~~~~p~-~~~~~~d~~DPWk~LDPHepg~l~~K  323 (591)
                      +++++.+...+ +..|.-++      |++|+.+.++   +++|+|..++..-. -++-.-+.++||++|+|++|+++++|
T Consensus       254 ~~nq~~~~~~~-~~~~~~p~~~l~dsGsqP~~~~~~---~~~~~~~ne~~~~~~fs~~~a~~~~p~~~l~~~ep~~s~vk  329 (688)
T KOG2359|consen  254 RQNQEIQSRAT-SRAITIAAKTLRDSGSQPTRLQPF---VERHRQSNHLNDFLSFVEGRVNKNRPSTHLTTDEPNTSRRP  329 (688)
T ss_pred             ccCcccccccc-ceeecCccccccccCCCCCCCCCC---CccchhhhhhhccccccccccccCCcccCCCCCCCCcccCC
Confidence            99999666554 33333232      8888776544   44566666533332 24444566799999999999999999


Q ss_pred             CCcccccccccCCCCcccccccccccccccCCCCchhHHHHHHHHHHHHhhhhccCCchHHHHHHHHhhccCCCCcc-cc
Q 007729          324 PFRKVKTFRRNGVKSAKRISISTIFPLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLADEGHETFD-AF  402 (591)
Q Consensus       324 PFKKgk~y~Rk~k~a~kl~~~~~~fp~~r~~Gptf~dle~i~~~~~~q~e~~r~sq~~~l~EKLrr~l~~~~~~~~~-~f  402 (591)
                      ||++++--..-+.+.. .-+....|+++|++||+.-++-.||..|-+....+.++|-.++|+|++..|+..+|.+-. ..
T Consensus       330 ~~~~~~~d~~~g~~~~-~d~~~~~~~l~r~~e~~~~~~~~iw~~~~~a~~d~~~s~~~~~~~k~~eml~~~~~~~~k~n~  408 (688)
T KOG2359|consen  330 DYAPMDFDDDFGGGGD-DDDDDYIRNLSRRDEKRADKNHIIWYTGDLPVVSKPVKKITKFQPKPAEMLARKQRREEKINK  408 (688)
T ss_pred             CCcccccccccCCCCC-ccccCCcccCCCCcccccchhhhhhhhcCCccccchhhhhccccCCcHHHHHhhcccchhhhh
Confidence            9999988877776554 344567899999999999999999987776566667888899999999999999998531 11


Q ss_pred             CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccCCCCCccccHHHHHHHHHHHH
Q 007729          403 ANPG---CYEDKGYDSGDPDIGHPDFDMPDGMYMDEDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDLCRSHLDAL  479 (591)
Q Consensus       403 ~~le---~~Ed~~~dgg~dDF~~~d~D~p~d~~~D~d~p~~~~e~~~g~~~~~~~da~~~~d~~~~~SYEdLcR~hve~~  479 (591)
                      ..++   ..+|     ...||++.+++.-++.++|.++.....   .++++ ++.+++.++....++|||+|||+|+++|
T Consensus       409 ~~~d~~~~~hd-----~~~d~~~~~~~~~~~p~~D~~ie~~~~---~~~ae-~~r~~~e~~a~~~~~S~E~L~R~~~~~~  479 (688)
T KOG2359|consen  409 SRRDEFMETHD-----YLQDYYYWRSAARINPIKDWKIESLRT---AILAE-KKRRIKEKTAKIREASIENLQRKRTARV  479 (688)
T ss_pred             hhhhhhhhhcc-----chhhhccccchhhhcCcchhhcccccc---ccccc-CcchhhhcccchHHHHHHHHHHHHHHHH
Confidence            1111   3333     557888888888888888877544422   24555 8899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCCCcchhhhHhhhcccccc--ceEehhhhhcCCcceeeehhhH
Q 007729          480 LANIAETEKQTELAARVSSWKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFIT--FVCLSFKLVYGLLIVEFLIFYR  557 (591)
Q Consensus       480 ~a~~~~~~~eTeLs~RV~~We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g--~~~~f~~Lv~G~~~~EVcR~F~  557 (591)
                      ||++||++++|+|++||++|+++|+|.|+|||.|  +|||||+||++|+.+|...+  .||+|.+||+||++|||||.| 
T Consensus       480 iA~~qK~~~~T~Ls~Ri~~W~d~V~~~L~EQE~H--~PFDI~~YGD~~i~r~~~e~~~~~~~F~eL~a~Q~~fEV~Ra~-  556 (688)
T KOG2359|consen  480 IAVEQKETEDTPLSNRGAEWDDVVDEDLAEQEEH--SPFDIGFYGDEEDVRPRGERPPMAPNFLELDALQTDFEVPRAE-  556 (688)
T ss_pred             hhhhhhhhhcchHhhhhchHHhhhhHhHHHhhhc--CCCccccccchhhccccccCCCCCCcHHHHhcCCcccccchhh-
Confidence            9999999999999999999999999999999999  99999999999999999988  899999999999999999999 


Q ss_pred             hhhHHH
Q 007729          558 IRTLHL  563 (591)
Q Consensus       558 ~~tL~l  563 (591)
                      +|.|||
T Consensus       557 ~A~LQL  562 (688)
T KOG2359|consen  557 YAPLQL  562 (688)
T ss_pred             hcceee
Confidence            466665

>KOG2359 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=3.6e-28  Score=259.80  Aligned_cols=436  Identities=10%  Similarity=-0.030  Sum_probs=276.3

Q ss_pred             ccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccccCCCCcccccCCCCCcCCCCCCcccccCCCccccc
Q 007729           64 ISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQIEGTPVQAEESGSHAVAGEENDFFWGFDDVPVEVK  143 (591)
Q Consensus        64 ~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~e~ed~f~~lDd~~~~~~  143 (591)
                      ..|||.+++++||||||+|++||||+|+++|+.++|++.++|..++  +.++     ...++++.+..|.++|+.+.. +
T Consensus       121 ~~~~~~v~~~~~qisa~~~v~nie~~~s~~~~~~~~is~p~qf~~~--~~~~-----~~~~~~~~d~~g~~~d~e~~~-~  192 (688)
T KOG2359|consen  121 ANFEKTVKEEKKSIDAVRMVENAEVIESQYERKSCLVAKPTQFMFK--LDEQ-----ILNAKSRPDVIGKVKDFEIKK-S  192 (688)
T ss_pred             hhhHhHHHHHhhccccceehhhHHHHHHHHHHHhccccCchhhhcC--chhh-----hhcCCccccccccccccchhh-h
Confidence            4799999999999999999999999999999999999999998886  2122     344566677889999999987 7


Q ss_pred             ccccCCCCCCCccccccCCCccceeccCcccccCCCCCcccchhhhcccccCCceeccCCCCccccccccCccccCCCCC
Q 007729          144 NCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYLLATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPND  223 (591)
Q Consensus       144 ~~idl~~~~~~~~~~~~~pP~~L~~~Egd~~~~~~e~~el~s~LLat~~~~kDFrLlntc~~~a~~~Fll~~~~~~~~~~  223 (591)
                      .+.++..+.-..-.+++..||+|++..        .+++.+                ++|.+++++.|++.  .....-.
T Consensus       193 ~~~hl~~d~~~~dc~~~~l~~fl~~~~--------~~~~~N----------------~~h~~~s~~~~f~~--~vp~~~~  246 (688)
T KOG2359|consen  193 KVKHDQQILYSHDCYRGNLDQFTLPGA--------RWMPDN----------------KEHEKISAYGPFKD--VVPPPRW  246 (688)
T ss_pred             cchhhhhccchhhhccccchhhccCcc--------ccCCCc----------------ccccccccccchhh--ccCCCCC
Confidence            788888887633388999999999776        443333                38999999999887  2222223


Q ss_pred             CCCCCCCcc--cccCCCcCCCCCCcccccccccCCCCCCCCCcccCCCC----CCCCCCCCCCCCCCCC-CCCCCC--CC
Q 007729          224 VYRGSSTRK--SFQSPTRRSGGTAHKSSLAKNKDVNLPASPRVACGFDV----GPNPPVNDNFGENYHG-FDMDDN--YS  294 (591)
Q Consensus       224 ~~r~ss~r~--~~~sp~~~sg~~~~~~~~~k~~~~~~~~~~~~~c~~~~----g~~pp~~~~~~~~~~g-~d~e~~--~~  294 (591)
                      +-|+++.++  .-.+|+..+-+++.-++.+-. +-+|...+--+-++.+    |..+    +|.   ++ .+.+++  +.
T Consensus       247 ~~~~~~v~~nq~~~~~~~~~~~~~p~~~l~ds-GsqP~~~~~~~~~~~~~ne~~~~~----~fs---~~~a~~~~p~~~l  318 (688)
T KOG2359|consen  247 FIEQEAVRQNQEIQSRATSRAITIAAKTLRDS-GSQPTRLQPFVERHRQSNHLNDFL----SFV---EGRVNKNRPSTHL  318 (688)
T ss_pred             CCcchhhccCccccccccceeecCcccccccc-CCCCCCCCCCCccchhhhhhhccc----ccc---ccccccCCcccCC
Confidence            334444332  223333333333333333222 2333332111100111    1111    110   01 223333  22


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc---cc--CCCCccccccccc--------ccccccCCCCchhH
Q 007729          295 EPRDFDNSDDEDDPWKPLNPHEPGNLKVKPFRKVKTFR---RN--GVKSAKRISISTI--------FPLAKLRGTISPEL  361 (591)
Q Consensus       295 ~p~~~~~~~d~~DPWk~LDPHepg~l~~KPFKKgk~y~---Rk--~k~a~kl~~~~~~--------fp~~r~~Gptf~dl  361 (591)
                      .+..+....-.++||..+||+..+  .++||+++++|+   +.  +.+..+++.+|.|        ...-|+.||.|.+|
T Consensus       319 ~~~ep~~s~vk~~~~~~~d~~~g~--~~~~d~~~~~~~l~r~~e~~~~~~~~iw~~~~~a~~d~~~s~~~~~~~k~~eml  396 (688)
T KOG2359|consen  319 TTDEPNTSRRPDYAPMDFDDDFGG--GGDDDDDDYIRNLSRRDEKRADKNHIIWYTGDLPVVSKPVKKITKFQPKPAEML  396 (688)
T ss_pred             CCCCCCcccCCCCcccccccccCC--CCCccccCCcccCCCCcccccchhhhhhhhcCCccccchhhhhccccCCcHHHH
Confidence            222344455556999999999999  899999999997   22  3455688889998        55667889999999


Q ss_pred             HHHHHHHHH-HHhhhhccCCchHHHHHHHHhhccCCCCccccCCCC-CCCCCCCCCCCCCCCCCCCCCC--CC-------
Q 007729          362 TEIWEARHK-CFEEQRASQPPSLYEKLRQSLADEGHETFDAFANPG-CYEDKGYDSGDPDIGHPDFDMP--DG-------  430 (591)
Q Consensus       362 e~i~~~~~~-q~e~~r~sq~~~l~EKLrr~l~~~~~~~~~~f~~le-~~Ed~~~dgg~dDF~~~d~D~p--~d-------  430 (591)
                      +..||.|.+ +.+..+         +++++...     ++.|+..+ +.++   .+..|+|.++..+|.  ++       
T Consensus       397 ~~~~~~~~k~n~~~~d---------~~~~~hd~-----~~d~~~~~~~~~~---~p~~D~~ie~~~~~~~ae~~r~~~e~  459 (688)
T KOG2359|consen  397 ARKQRREEKINKSRRD---------EFMETHDY-----LQDYYYWRSAARI---NPIKDWKIESLRTAILAEKKRRIKEK  459 (688)
T ss_pred             Hhhcccchhhhhhhhh---------hhhhhccc-----hhhhccccchhhh---cCcchhhcccccccccccCcchhhhc
Confidence            999999998 666666         77777541     13344444 3333   455565554331111  00       


Q ss_pred             ------------------------------------------------------------CCCCCCCcccCCCCC-----
Q 007729          431 ------------------------------------------------------------MYMDEDVPLQHDKHD-----  445 (591)
Q Consensus       431 ------------------------------------------------------------~~~D~d~p~~~~e~~-----  445 (591)
                                                                                  .|+|..+.-.+.+..     
T Consensus       460 ~a~~~~~S~E~L~R~~~~~~iA~~qK~~~~T~Ls~Ri~~W~d~V~~~L~EQE~H~PFDI~~YGD~~i~r~~~e~~~~~~~  539 (688)
T KOG2359|consen  460 TAKIREASIENLQRKRTARVIAVEQKETEDTPLSNRGAEWDDVVDEDLAEQEEHSPFDIGFYGDEEDVRPRGERPPMAPN  539 (688)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhhhhhcchHhhhhchHHhhhhHhHHHhhhcCCCccccccchhhccccccCCCCCCc
Confidence                                                                        111111111111110     


Q ss_pred             -----CCCCCCCCCccc------cC-CC----CCccccHHHHHHHHHHHH-----HHHHHHHHH------HHHHHHHHHH
Q 007729          446 -----DGPAPFEPNEAF------EH-GS----QDSHANLEDLCRSHLDAL-----LANIAETEK------QTELAARVSS  498 (591)
Q Consensus       446 -----~g~~~~~~~da~------~~-~d----~~~~~SYEdLcR~hve~~-----~a~~~~~~~------eTeLs~RV~~  498 (591)
                           .|-..|++--+|      +| ++    ++..++-+=+|...|+-|     ++.-++-+.      ...+...|..
T Consensus       540 F~eL~a~Q~~fEV~Ra~~A~LQL~N~~dVel~~~~n~~~~P~l~~AV~~~S~RLL~~~~~~k~~~~~~~P~~~~~~~i~k  619 (688)
T KOG2359|consen  540 FLELDALQTDFEVPRAEYAPLQLENIDDVELNSVINLPALPLLKKAVENRSDRLLMAYEMAKAYEDVDVPVSTLQEHVDK  619 (688)
T ss_pred             HHHHhcCCcccccchhhhcceeeccCCceeecccCCCccchhHHHhhcchhHHHHHHHHHHHhhcccccchhcccccccc
Confidence                 111122221111      11 11    122233466777666543     222222221      3456667999


Q ss_pred             HHHhhhhhhhhhhhcCCCCCCcchhhhHhhhccccccceEehhhhhcCCcceeeehhhHhhhHHHHHhcccceEEE
Q 007729          499 WKQKIENNLDEQVTYCFTPFYPESSYISLSSTFNFITFVCLSFKLVYGLLIVEFLIFYRIRTLHLIFMNMEKVLLI  574 (591)
Q Consensus       499 We~kI~P~LeeqE~~~~~~FDIh~yG~~Iv~~f~~~g~~~~f~~Lv~G~~~~EVcR~F~~~tL~l~~~~~~~~~~~  574 (591)
                      |+.+++|+|++.++-    ++.|..|+-+|..++.-|..++...+|..+      |||    |+|+||-++|||+|
T Consensus       620 ~~s~~~p~~~~~~t~----~~~~~~~~~~~~~~~i~g~~~r~~~~~~~r------r~~----~s~~~~~v~~v~~~  681 (688)
T KOG2359|consen  620 WHSRMEPILEEGETE----YDVHAVGRAVIGQYDIEGGTKRLLDLVMDR------RYF----LSCLFMCVGNVMVS  681 (688)
T ss_pred             cccccCCCcccCCch----hhhhhhceeeeeeeeecCcceecchhhhhh------hhc----chhhhhhhhhhhhh
Confidence            999999999998866    999999999999999999999999998875      789    99999999999998

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=93.23  E-value=0.14  Score=46.48  Aligned_cols=42  Identities=26%  Similarity=0.386  Sum_probs=37.9

Q ss_pred             ccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhcc
Q 007729           64 ISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQ  105 (591)
Q Consensus        64 ~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~  105 (591)
                      ..+.+.-.+.|+-|-+-||+|||+|||+=+-.++.-|....+
T Consensus        49 ~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~~~~~l~~~~~   90 (111)
T PF04825_consen   49 NPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNELLSKLKRAFR   90 (111)
T ss_pred             cCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999999999999999888887777665

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding

>PF05786 Cnd2: Condensin complex subunit 2; InterPro: IPR022816 This entry represents eukaryotic condensin complex subunit 2 proteins

Probab=92.74  E-value=0.18  Score=58.26  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcccccccCCCCcccccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhc
Q 007729           43 LEDYLLKICSGQVTASESLDSISVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKS  104 (591)
Q Consensus        43 LeeYl~~i~~~~~~~~~~~~~~~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~  104 (591)
                      |=+|+.+|-    ...+   ...+||.-|+-.|-||+-|||=+|+-+|.=+|++|.-|.+++
T Consensus       102 lID~~~~~~----~~~~---~~~~nFq~As~tLd~~~KIy~~RVDsv~~~t~k~l~~l~~~~  156 (725)
T PF05786_consen  102 LIDYFHDLI----DKKD---GDMINFQKASCTLDASVKIYSSRVDSVHTETYKLLSGLARSD  156 (725)
T ss_pred             HHHHHHHHH----hccc---cccchHHHhhhheeeeeeEEeeeehHHHHHHHHHHHhccccc
Confidence            567777662    2222   257999999999999999999999999999999999997655

Included in this group are several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase [].

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.96  E-value=1.6  Score=50.33  Aligned_cols=44  Identities=30%  Similarity=0.406  Sum_probs=34.7

Q ss_pred             cccHHHHHHHhhcceeeeehhhHHHHHHHHHHHHHHhhhccccc
Q 007729           65 SVNFAEAALLVQGSVQVYSRKVEYLYNLVLHTLEFISQKSQQDQ  108 (591)
Q Consensus        65 ~~NFaEAAlLiQgSa~VYsrKVeyLy~lv~~~l~~l~~~~~~~~  108 (591)
                      .|--.=-+.|+.|=+-||||||.|||+=+-.++--|...=+..+
T Consensus        50 ~lALRtSghLLlGVVRIYSrK~~YLl~Dcneal~kIk~afr~~~   93 (614)
T KOG1213|consen   50 PLALRTSGHLLLGVVRIYSRKVKYLLDDCNEALLKIKMAFRSGQ   93 (614)
T ss_pred             ceehhhhcccceeeEEeehhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            34445567899999999999999999999888877766655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 79/549 (14%), Positives = 147/549 (26%), Gaps = 195/549 (35%)

Query: 128 ENDFFWGFDDVPVEVKNCLDSPNGKDTSLNLFVKPPANLVVLEGDCLDTVGDGTELESYL 187
           E+ F   FD      K+  D P                 ++ + +    +     +    
Sbjct: 26  EDAFVDNFD-----CKDVQDMPKS---------------ILSKEEIDHIIMSKDAVSG-- 63

Query: 188 LATSDLYRDFILLDTYDSVAVDDFLEGDEVCKGPNDVYRGSSTRKSFQSPTRRSGGTAHK 247
                  R F  L +     V  F+E        N  +  S  +   + P+  +      
Sbjct: 64  -----TLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMT------ 109

Query: 248 SSLAKNKDVNLPASPRVACGFDVGPNPPVNDNFGENYHGFDMDDNYSEPRDFDNSDDEDD 307
                                                        Y E RD   +D++  
Sbjct: 110 -------------------------------------------RMYIEQRDRLYNDNQ-- 124

Query: 308 PWKPLN---PHEPGNLK-----VKPFRKV---------KT--------------FRRNGV 336
            +   N         L+     ++P + V         KT                   +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 337 ---KSAKRISISTIF-PLAKLRGTISPELTEIWEARHKCFEEQRASQPPSLYEKLRQSLA 392
                    S  T+   L KL   I P  T    + H    + R     S+  +LR+ L 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIH---SIQAELRRLLK 239

Query: 393 DEGH-------------ETFDAFANPGC-----YEDKGYDSGDPDIGHPDFDMPDGMYMD 434
            + +             + ++AF N  C        K              D        
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQ-----------VTDFLSAATTT 287

Query: 435 EDVPLQHDKHDDGPAPFEPNEAFEHGSQDSHANLEDL----CRSHLDALLANIAETEKQT 490
             + L H  H        P+E      +      +DL      ++    L+ IAE+ +  
Sbjct: 288 H-ISLDH--HSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIR-- 338

Query: 491 ELAARVSSWKQ--------KIENNLDEQVTY----CFTPF--YPESSYIS---LSST-FN 532
           +  A   +WK          IE++L+          F     +P S++I    LS   F+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 533 FITFVCLSF--KLVYGLLIVEFLIFYRIRTLHLIFM----------NMEKVLLISYHLKE 580
            I    +    KL    L+ +      I  +  I++           + + ++  Y++ +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 581 TMEISHPLL 589
           T +    + 
Sbjct: 458 TFDSDDLIP 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00