Citrus Sinensis ID: 007819

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59

MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASGGQTTL

ccccccccccccHHHHHHHccccccccccccccEEEEEcccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccccEEEEcEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccEEcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccc

ccccccccHcHHHHHHHHHHccccccHHHccccEEEEccccccccccccHHHHHHHccccccccEEEEEcccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEccccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHccccccHHHHHHcHHHcccccccccccccEEcccEEccccHHHHHHHHHHHHHHHHccccccccEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccc

mdsdfgipreLSGLQQLrslyqpelppclqgttvrvefgdstttadpadthsisrsfphtygqpLAHFLRAtakvpdaqiitehpairvgivfcgrqspgghnvvWGLYDAlklhnpkstllgflggseglfaQKTLEVTKEILSTYknqggydmlgrtkDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFaeakcptkvvgvpvtlngdlknqfvetNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEqdknhgvillpeglieSIPEVYALLKEIHSLLRqgvpvdnissqlsPWASALFEflppfikkqlllqpesddsaqLSQIETEKLLAHLVEVEMNKrlkegtykgkkfnaichffgyqargslpskfdcdyaYVLGHICYHILAAGLNGYMATVtnlknpankwrcgaapitsmmtvkrwsqnpgassigrpainpatvDMRGKAYELLRQNATRFLLddlyrnpgpvqfdgpgadaKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMsasggqttl

MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILStyknqggydmLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRlkegtykgkkFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSqnpgassigrpainpaTVDMRGKAYELLRQNATRFLLDDLYRNPGpvqfdgpgadAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSamsasggqttl

MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTllgflggseglfAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASGGQTTL

************************LPPCLQGTTVRVEF******************FPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLL**************TEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRW*************INPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEV*************

********RELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL***********ITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGR*K**********AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVK**************AINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMS********

MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQ********LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLS***********

***DFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMS********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		588	2.2.26 [Sep-21-2011]
Q41140		617	Pyrophosphate--fructose 6	N/A	no	0.989	0.943	0.848	0.0
Q9C9K3		617	Pyrophosphate--fructose 6	yes	no	0.979	0.933	0.814	0.0
P21342		616	Pyrophosphate--fructose 6	N/A	no	0.979	0.935	0.814	0.0
Q9SYP2		614	Pyrophosphate--fructose 6	no	no	0.994	0.952	0.799	0.0
Q8W4M5		566	Pyrophosphate--fructose 6	no	no	0.835	0.867	0.380	1e-98
F4JGR5		569	Pyrophosphate--fructose 6	no	no	0.812	0.840	0.376	1e-96
Q41141		552	Pyrophosphate--fructose 6	N/A	no	0.855	0.911	0.375	3e-95
P21343		552	Pyrophosphate--fructose 6	N/A	no	0.831	0.885	0.376	1e-94
Q9C5J7		485	6-phosphofructokinase 7 O	no	no	0.324	0.393	0.243	1e-09
Q94AA4		489	6-phosphofructokinase 3 O	no	no	0.324	0.390	0.248	3e-09

>sp\|Q41140\|PFPA_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1	Back alignment and function desciption

 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/609 (84%), Positives = 551/609 (90%), Gaps = 27/609 (4%)

Query: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60
           MDSDFGIPRELS LQ+LRSLY+PELPPCLQGTTVRVE GD TT    A  H+ISRSFPHT
Sbjct: 1   MDSDFGIPRELSDLQKLRSLYKPELPPCLQGTTVRVELGDGTTACSEAGAHTISRSFPHT 60

Query: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120
           YGQPLAHFLRATAKV DA II+EHPA+RVG+VFCGRQSPGGHNVVWGL++ALK+HNP ST
Sbjct: 61  YGQPLAHFLRATAKVADAHIISEHPAMRVGVVFCGRQSPGGHNVVWGLHNALKIHNPNST 120

Query: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180
           LLGFLGGSEGLFAQKTLEVT +ILSTYKNQGGYD+LGRTKDQIRTTEQV+AALT CKNL 
Sbjct: 121 LLGFLGGSEGLFAQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTTEQVHAALTTCKNLK 180

Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
           LDGLVIIGGVTSNTDAA LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV
Sbjct: 181 LDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240

Query: 241 NSQLISNVCTDALSAEK---------------------------VILGEEVAASKLTLFD 273
           NSQLISNVCTDALSAEK                           VILGEEVAASKLTLFD
Sbjct: 241 NSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFD 300

Query: 274 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 333
           LTKQ+CDAVQARAEQDK HGVILLPEGLIESIPEVYALLKEIH LLRQGV  +NISSQLS
Sbjct: 301 LTKQVCDAVQARAEQDKYHGVILLPEGLIESIPEVYALLKEIHGLLRQGVSPNNISSQLS 360

Query: 334 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 393
           PWASALFEFLPPFIKKQLLL PESDDSAQLSQIETEKLLAHLVE EMNKRLKEGTYKGKK
Sbjct: 361 PWASALFEFLPPFIKKQLLLYPESDDSAQLSQIETEKLLAHLVEAEMNKRLKEGTYKGKK 420

Query: 394 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 453
           FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYH+LAAGLNGYMAT TNLKNP NKWRCG
Sbjct: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNKWRCG 480

Query: 454 AAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGP 513
           AAPI +MMTVKRW+QNPGA+SIG+PAI+PA VD++GKAYELLR NA +FL+DDLYRNPGP
Sbjct: 481 AAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGP 540

Query: 514 VQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVT 573
           +QF+GPGADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALSVMASVT
Sbjct: 541 LQFEGPGADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVT 600

Query: 574 EVLSAMSAS 582
           +VL  MS++
Sbjct: 601 DVLLTMSST 609

The alpha subunit may be involved in the regulation of PFP by Fru-2,6-P.
Ricinus communis (taxid: 3988)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 9EC: 0

>sp\|Q9C9K3\|PFPA2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 OS=Arabidopsis thaliana GN=PFP-ALPHA2 PE=2 SV=1	Back alignment and function description

>sp\|P21342\|PFPA_SOLTU Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1	Back alignment and function description

>sp\|Q9SYP2\|PFPA1_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 OS=Arabidopsis thaliana GN=PFP-ALPHA1 PE=2 SV=1	Back alignment and function description

>sp\|Q8W4M5\|PFPB1_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 OS=Arabidopsis thaliana GN=PFP-BETA1 PE=2 SV=1	Back alignment and function description

>sp\|F4JGR5\|PFPB2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 OS=Arabidopsis thaliana GN=PFP-BETA2 PE=2 SV=1	Back alignment and function description

>sp\|Q41141\|PFPB_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1	Back alignment and function description

>sp\|P21343\|PFPB_SOLTU Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2	Back alignment and function description

>sp\|Q9C5J7\|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1	Back alignment and function description

>sp\|Q94AA4\|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		588
162955859		615	pyrophosphate-dependent phosphofructokin	1.0	0.956	0.956	0.0
3790102		615	pyrophosphate-dependent phosphofructokin	1.0	0.956	0.949	0.0
224086120		617	predicted protein [Populus trichocarpa]	1.0	0.952	0.854	0.0
118484164		617	unknown [Populus trichocarpa]	1.0	0.952	0.852	0.0
255539346		617	phosphofructokinase, putative [Ricinus c	0.989	0.943	0.853	0.0
2499488		617	RecName: Full=Pyrophosphate--fructose 6-	0.989	0.943	0.848	0.0
384255900		617	phosphofructokinase alpha subunit [Eriob	1.0	0.952	0.833	0.0
225457674		616	PREDICTED: pyrophosphate--fructose 6-pho	1.0	0.954	0.836	0.0
224061821		617	predicted protein [Populus trichocarpa]	0.979	0.933	0.850	0.0
356521092		617	PREDICTED: pyrophosphate--fructose 6-pho	0.996	0.949	0.838	0.0

>gi\|162955859\|gb\|ABY25305.1\| pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus sinensis x Citrus trifoliata]	Back alignment and taxonomy information

 Score = 1205 bits (3117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/615 (95%), Positives = 588/615 (95%), Gaps = 27/615 (4%)

Query: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60
           MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT
Sbjct: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60

Query: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120
           YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST
Sbjct: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120

Query: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180
           LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN
Sbjct: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180

Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
           LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV
Sbjct: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240

Query: 241 NSQLISNVCTDALSAEK---------------------------VILGEEVAASKLTLFD 273
           NSQLISNVCTDALSAEK                           VILGEEVAASKLTLFD
Sbjct: 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD 300

Query: 274 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 333
           LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS
Sbjct: 301 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 360

Query: 334 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 393
           PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK
Sbjct: 361 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 420

Query: 394 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 453
           FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG
Sbjct: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480

Query: 454 AAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGP 513
           AAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGP
Sbjct: 481 AAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGP 540

Query: 514 VQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVT 573
           VQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVT
Sbjct: 541 VQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVT 600

Query: 574 EVLSAMSASGGQTTL 588
           EVLSAMSASGGQTTL
Sbjct: 601 EVLSAMSASGGQTTL 615

Source: Citrus sinensis x Citrus trifoliata

Species: Citrus sinensis x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|3790102\|gb\|AAC67587.1\| pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi]	Back alignment and taxonomy information

>gi\|224086120\|ref\|XP_002307823.1\| predicted protein [Populus trichocarpa] gi\|222857272\|gb\|EEE94819.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118484164\|gb\|ABK93964.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539346\|ref\|XP_002510738.1\| phosphofructokinase, putative [Ricinus communis] gi\|223551439\|gb\|EEF52925.1\| phosphofructokinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|2499488\|sp\|Q41140.1\|PFPA_RICCO RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase gi\|483547\|emb\|CAA83682.1\| pyrophosphate-dependent phosphofructokinase alpha subunit [Ricinus communis]	Back alignment and taxonomy information

>gi\|384255900\|gb\|ADZ96380.2\| phosphofructokinase alpha subunit [Eriobotrya japonica]	Back alignment and taxonomy information

>gi\|225457674\|ref\|XP_002276269.1\| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224061821\|ref\|XP_002300615.1\| predicted protein [Populus trichocarpa] gi\|222842341\|gb\|EEE79888.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521092\|ref\|XP_003529192.1\| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		588
TAIR\|locus:2011671		617	AT1G76550 [Arabidopsis thalian	0.568	0.541	0.826	7.5e-264
TAIR\|locus:2037385		614	AT1G20950 [Arabidopsis thalian	0.573	0.548	0.825	8.7e-261
TAIR\|locus:2008920		566	AT1G12000 [Arabidopsis thalian	0.452	0.469	0.385	8e-89
TAIR\|locus:2136652		569	MEE51 "maternal effect embryo	0.450	0.465	0.398	1.3e-86
TAIR\|locus:2118249		473	PFK1 "phosphofructokinase 1" [	0.311	0.386	0.238	0.00017
TAIR\|locus:2136849		489	PFK3 "phosphofructokinase 3" [	0.324	0.390	0.223	0.00018
TAIR\|locus:2165046		485	PFK7 "phosphofructokinase 7" [	0.324	0.393	0.218	0.00092

TAIR\|locus:2011671 AT1G76550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1488 (528.9 bits), Expect = 7.5e-264, Sum P(2) = 7.5e-264
 Identities = 276/334 (82%), Positives = 315/334 (94%)

Query:   249 CTDALSAEKVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEV 308
             CT       VILGEEV ASKLT+FD+ KQICDAVQARAEQDKNHGVIL+PEGL+ESIPE+
Sbjct:   276 CTLQSHPNMVILGEEVTASKLTIFDIIKQICDAVQARAEQDKNHGVILIPEGLVESIPEL 335

Query:   309 YALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIET 368
             YALLKEIH LL++GV VDNIS+QLS W+SALFEFLPPFIKKQLLL PESDDSAQLSQIET
Sbjct:   336 YALLKEIHGLLKEGVQVDNISTQLSSWSSALFEFLPPFIKKQLLLHPESDDSAQLSQIET 395

Query:   369 EKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHI 428
             EKLLA+LVE EMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH+CYHI
Sbjct:   396 EKLLAYLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHI 455

Query:   429 LAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMR 488
             LAAGLNGYMATVTNLK+P NKW+CGAAPI++MMTVKRWSQN G+++IGRP I+PA+VD++
Sbjct:   456 LAAGLNGYMATVTNLKSPVNKWKCGAAPISAMMTVKRWSQNSGSTTIGRPVIHPASVDLK 515

Query:   489 GKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDE 548
             GKAY+LLRQNA +FL++D+YRNPGPVQ+DGPGADAKAV+LCVED+DYMG+IK+LQ+YLD+
Sbjct:   516 GKAYDLLRQNAQKFLMEDMYRNPGPVQYDGPGADAKAVSLCVEDQDYMGKIKKLQEYLDQ 575

Query:   549 VRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 582
             VRTIVKPGCSQ+VLKAALSVMASVT+VL+ +S+S
Sbjct:   576 VRTIVKPGCSQDVLKAALSVMASVTDVLTTISSS 609

GO:0003872 "6-phosphofructokinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005945 "6-phosphofructokinase complex" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0010317 "pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex" evidence=ISS

GO:0047334 "diphosphate-fructose-6-phosphate 1-phosphotransferase activity" evidence=IEA;ISS;IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2037385 AT1G20950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008920 AT1G12000 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136652 MEE51 "maternal effect embryo arrest 51" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21342	PFPA_SOLTU	2, ., 7, ., 1, ., 9, 0	0.8142	0.9795	0.9350	N/A	no
Q41140	PFPA_RICCO	2, ., 7, ., 1, ., 9, 0	0.8489	0.9897	0.9432	N/A	no
Q9SYP2	PFPA1_ARATH	2, ., 7, ., 1, ., 9, 0	0.7996	0.9948	0.9527	no	no
Q9C9K3	PFPA2_ARATH	2, ., 7, ., 1, ., 9, 0	0.8142	0.9795	0.9335	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.90	0.994
3rd Layer	2.7.1	0.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		588
PLN03028		610	PLN03028, PLN03028, pyrophosphate--fructose-6-phos	0.0
TIGR02477		539	TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp	0.0
PRK07085		555	PRK07085, PRK07085, diphosphate--fructose-6-phosph	0.0
cd00765		550	cd00765, Pyrophosphate_PFK, Phosphofructokinase, a	1e-141
PLN02251		568	PLN02251, PLN02251, pyrophosphate-dependent phosph	1e-136
PTZ00468		1328	PTZ00468, PTZ00468, phosphofructokinase family pro	1e-105
PTZ00287		1419	PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi	1e-95
PTZ00287		1419	PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi	2e-85
PTZ00468		1328	PTZ00468, PTZ00468, phosphofructokinase family pro	6e-44
cd00363		338	cd00363, PFK, Phosphofructokinase, a key regulator	8e-44
COG0205		347	COG0205, PfkA, 6-phosphofructokinase [Carbohydrate	3e-41
TIGR02482		301	TIGR02482, PFKA_ATP, 6-phosphofructokinase	8e-09
PRK06830		443	PRK06830, PRK06830, diphosphate--fructose-6-phosph	2e-06
PTZ00286		459	PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov	2e-05
PLN02564		484	PLN02564, PLN02564, 6-phosphofructokinase	3e-05
TIGR02483		324	TIGR02483, PFK_mixed, phosphofructokinase	1e-04
PLN02884		411	PLN02884, PLN02884, 6-phosphofructokinase	1e-04
PRK03202		320	PRK03202, PRK03202, 6-phosphofructokinase; Provisi	2e-04
pfam00365		279	pfam00365, PFK, Phosphofructokinase	0.002

>gnl\|CDD\|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

 Score = 1219 bits (3156), Expect = 0.0
 Identities = 513/610 (84%), Positives = 551/610 (90%), Gaps = 29/610 (4%)

Query: 8   PRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAH 67
           PRELSGLQ+LRSLYQPELPPCLQGTTVRVE GD+TT ADPAD H+ISR+FPHTYGQPLAH
Sbjct: 1   PRELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAH 60

Query: 68  FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG 127
           FLRATAKVPDAQ+ITEHPA+RVG+VFCGRQSPGGHNV+WGL+DALK HNP S LLGFLGG
Sbjct: 61  FLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGG 120

Query: 128 SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187
           +EGLFAQKTLE+T ++LSTYKNQGGYD+LGRTKDQIRTTEQVNAAL AC+ L LDGLVII
Sbjct: 121 TEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVII 180

Query: 188 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247
           GGVTSNTDAA LAETFAEAKC TKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN
Sbjct: 181 GGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 240

Query: 248 VCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICD 280
           VCTDALSAEK                           VILGEEVAASKLTLFD+TKQICD
Sbjct: 241 VCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICD 300

Query: 281 AVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALF 340
           AVQARAEQDKNHGVIL+PEGLIESIPEVYALL+EIH LL+QGV VDNISSQLSPWASALF
Sbjct: 301 AVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALF 360

Query: 341 EFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 400
           EFLPPFIKKQLLL PESDDSAQLSQIETEKLLA LVE EMNKR KEGTYKGKKFNAICHF
Sbjct: 361 EFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHF 420

Query: 401 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM 460
           FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLK+P NKWRCGAAPIT+M
Sbjct: 421 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAM 480

Query: 461 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPG 520
           M+VKRWS+ PGAS IG+PAI+PA VD++GKAYELLRQNA+ FL+DDLYRNPGP+QFDGPG
Sbjct: 481 MSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPG 540

Query: 521 ADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMS 580
           ADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALS MASVT+VL+ MS
Sbjct: 541 ADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSSMASVTDVLTVMS 600

Query: 581 ASG--GQTTL 588
           +    G T L
Sbjct: 601 SPSNRGLTPL 610

Length = 610

>gnl\|CDD\|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase	Back alignment and domain information

>gnl\|CDD\|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>gnl\|CDD\|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>gnl\|CDD\|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|178178 PLN02564, PLN02564, 6-phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|233887 TIGR02483, PFK_mixed, phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|178472 PLN02884, PLN02884, 6-phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|109425 pfam00365, PFK, Phosphofructokinase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		588
PLN03028		610	pyrophosphate--fructose-6-phosphate 1-phosphotrans	100.0
PLN02251		568	pyrophosphate-dependent phosphofructokinase	100.0
PTZ00287		1419	6-phosphofructokinase; Provisional	100.0
cd00765		550	Pyrophosphate_PFK Phosphofructokinase, a key regul	100.0
PRK07085		555	diphosphate--fructose-6-phosphate 1-phosphotransfe	100.0
PTZ00468		1328	phosphofructokinase family protein; Provisional	100.0
TIGR02477		539	PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp	100.0
PTZ00287		1419	6-phosphofructokinase; Provisional	100.0
cd00363		338	PFK Phosphofructokinase, a key regulatory enzyme i	100.0
PLN02564		484	6-phosphofructokinase	100.0
PRK14072		416	6-phosphofructokinase; Provisional	100.0
PRK06830		443	diphosphate--fructose-6-phosphate 1-phosphotransfe	100.0
PTZ00286		459	6-phospho-1-fructokinase; Provisional	100.0
PLN02884		411	6-phosphofructokinase	100.0
COG0205		347	PfkA 6-phosphofructokinase [Carbohydrate transport	100.0
TIGR02483		324	PFK_mixed phosphofructokinase. Members of this fam	100.0
PRK14071		360	6-phosphofructokinase; Provisional	100.0
PRK06555		403	pyrophosphate--fructose-6-phosphate 1-phosphotrans	100.0
PRK03202		320	6-phosphofructokinase; Provisional	100.0
TIGR02482		301	PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin	100.0
cd00763		317	Bacterial_PFK Phosphofructokinase, a key regulator	100.0
TIGR02478		745	6PF1K_euk 6-phosphofructokinase, eukaryotic type.	100.0
PF00365		282	PFK: Phosphofructokinase; InterPro: IPR000023 The	100.0
cd00764		762	Eukaryotic_PFK Phosphofructokinase, a key regulato	100.0
PTZ00468		1328	phosphofructokinase family protein; Provisional	100.0
TIGR02478		745	6PF1K_euk 6-phosphofructokinase, eukaryotic type.	100.0
cd00764		762	Eukaryotic_PFK Phosphofructokinase, a key regulato	100.0
KOG2440		666	consensus Pyrophosphate-dependent phosphofructo-1-	100.0
KOG2440		666	consensus Pyrophosphate-dependent phosphofructo-1-	99.93
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	90.23
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	90.2
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	90.19
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.21
cd01537		264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	88.89
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844		100	GARS_N: Phosphoribosylglycinamide synthetase, N do	87.01
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	86.79
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	86.73
cd06321		271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	84.21
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	83.58
PF00465		366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	82.7
PLN02929		301	NADH kinase	82.42
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	81.19
cd08180		332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	80.6
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.52
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.1

>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.7e-153  Score=1266.88  Aligned_cols=581  Identities=88%  Similarity=1.365  Sum_probs=555.0

Q ss_pred             CCCCChhhhhhhccCCCCCcCcCCCceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCe
Q 007819            8 PRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAI   87 (588)
Q Consensus         8 ~~~~s~lq~~R~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
                      ++++|+||+.|+.|+|+||++|++..++++.|+.+++.+..++++|+++||||||+|+++|.++....|+.+.++.+..+
T Consensus         1 ~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (610)
T PLN03028          1 PRELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAV   80 (610)
T ss_pred             CCCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCccc
Confidence            46899999999999999999999877999999999998767779999999999999999999854334677777677779


Q ss_pred             EEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChH
Q 007819           88 RVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTE  167 (588)
Q Consensus        88 ~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e  167 (588)
                      |||||+|||||||+||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++++++
T Consensus        81 rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e  160 (610)
T PLN03028         81 RVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTE  160 (610)
T ss_pred             EEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 007819          168 QVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN  247 (588)
Q Consensus       168 ~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n  247 (588)
                      ++++++++|++++||+||+||||||+++|++|+|||++++++|+||||||||||||+++.+|+|||||||+++++++|+|
T Consensus       161 ~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~n  240 (610)
T PLN03028        161 QVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN  240 (610)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999987778999999999999999999


Q ss_pred             HHHHhhhccc---------------------------eEEecccccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCC
Q 007819          248 VCTDALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEG  300 (588)
Q Consensus       248 l~~dA~S~~k---------------------------vlI~Ee~~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEG  300 (588)
                      |++||.|+++                           |+|+||+..+++||.+|++.|++.|++|++.|++||||+||||
T Consensus       241 i~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEG  320 (610)
T PLN03028        241 VCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEG  320 (610)
T ss_pred             HHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999999964                           7799999888999999999999999999999999999999999


Q ss_pred             CcCcchhHHHHHHHHHHHHhcCccccCccccCCchhhhhhccChhhHhhhhccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 007819          301 LIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEM  380 (588)
Q Consensus       301 l~~~ipe~~~li~el~~~l~~~~~~~e~~~~ls~~~~~l~~~lp~~i~~qll~~rD~~Gn~~ls~i~te~ll~~~v~~~l  380 (588)
                      ++++|||++.||+|++++++++...++..+.||||++++|++||++||+||+.+||+|||+|+++|+||++|+++|+++|
T Consensus       321 lie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~eL  400 (610)
T PLN03028        321 LIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEM  400 (610)
T ss_pred             ccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHHH
Confidence            99999999999999999998776667778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCceeEeecchHhH
Q 007819          381 NKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSM  460 (588)
Q Consensus       381 ~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~w~~~~iPl~~~  460 (588)
                      .+++++|+|++.+|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++|
T Consensus       401 ~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~~  480 (610)
T PLN03028        401 NKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAM  480 (610)
T ss_pred             HHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHHH
Confidence            99999999999569999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCCCCccceEEecccchhhhHH
Q 007819          461 MTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIK  540 (588)
Q Consensus       461 ~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~y~~~~~  540 (588)
                      ||+|++..||+.+..++|||+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++|+||.+|+++|++||+
T Consensus       481 m~~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~~~~~~~  560 (610)
T PLN03028        481 MSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQDYMGRIK  560 (610)
T ss_pred             hhHHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhhhHHHHH
Confidence            99999445766666899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCC
Q 007819          541 ELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASG--GQTTL  588 (588)
Q Consensus       541 ~~~~~~~~~~~~~~~g~~~~~l~~a~~~l~~~~~~l~~~~~~~--~~~~~  588 (588)
                      ++++||++||++||||||+|+||+|+++|+||+|+|++||||+  +++|+
T Consensus       561 ~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~  610 (610)
T PLN03028        561 KLQEYLDKVRTIVKPGCSQEVLKAALSSMASVTDVLTVMSSPSNRGLTPL  610 (610)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence            9999999999999999999999999999999999999999999  88775

>PLN02251 pyrophosphate-dependent phosphofructokinase	Back alignment and domain information

>PTZ00287 6-phosphofructokinase; Provisional	Back alignment and domain information

>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

>PTZ00468 phosphofructokinase family protein; Provisional	Back alignment and domain information

>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase	Back alignment and domain information

>PTZ00287 6-phosphofructokinase; Provisional	Back alignment and domain information

>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>PLN02564 6-phosphofructokinase	Back alignment and domain information

>PRK14072 6-phosphofructokinase; Provisional	Back alignment and domain information

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

>PTZ00286 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>PLN02884 6-phosphofructokinase	Back alignment and domain information

>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02483 PFK_mixed phosphofructokinase	Back alignment and domain information

>PRK14071 6-phosphofructokinase; Provisional	Back alignment and domain information

>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated	Back alignment and domain information

>PRK03202 6-phosphofructokinase; Provisional	Back alignment and domain information

>TIGR02482 PFKA_ATP 6-phosphofructokinase	Back alignment and domain information

>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type	Back alignment and domain information

>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []	Back alignment and domain information

>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>PTZ00468 phosphofructokinase family protein; Provisional	Back alignment and domain information

>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type	Back alignment and domain information

>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems	Back alignment and domain information

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1	Back alignment and domain information

>PLN02929 NADH kinase	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		588
1kzh_A		555	Structure Of A Pyrophosphate-dependent Phosphofruct		2e-83

>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555

Back alignment and structure

Iteration: 1

Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 175/559 (31%), Positives = 293/559 (52%), Gaps = 59/559 (10%) Query: 12 SGLQQLRSLYQPELPPCLQG--TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69 S +Q R Y P+LP L+ + + +G++T D ++ F +TYG P+ F Sbjct: 4 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQ--DRQALKEFFKNTYGLPIISFT 61 Query: 70 RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXX 129 + + ++ A+ +GI+ G +PGGHNV+ G++DA+K NP S Sbjct: 62 EGESSLSFSK------ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115 Query: 130 XXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189 +E+T+ ++++Y+N GG+D++ + +I T E N AL K NL+ ++IIGG Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175 Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249 SNT+AA LAE F + +V+GVP T++ DL+N +E + GFD+ K+ S+LI N+C Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235 Query: 250 TDALSAEKV---------------------------ILGEEVAASKLTLFDLTKQICDAV 282 DA+S +K I+ EEV A K TL ++ ++ + Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295 Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQ------GVPVDNIS----SQL 332 R+ N GV+++PEGLIE IPEV +L+ E+ + + G+ ++ + ++L Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355 Query: 333 SPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389 S + ++ LP FI+ +L+ L+ + + +S++ TEKL +++ +N K G Y Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415 Query: 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 449 KG F + HFFGY+ R + PS FD DY Y LG+ ++ GL GYM+ + NL Sbjct: 416 KGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474 Query: 450 WRCGAAPITSMMTV-KRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLY 508 W G P+T +M + +R+ + +P I A VD+ G+ ++ +N ++ L++LY Sbjct: 475 WIAGGVPLTMLMNMEERYGEK-------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLY 527 Query: 509 RNPGPVQFDGPGADAKAVT 527 PGPVQ+ G +T Sbjct: 528 LYPGPVQYFGSSEIVDEIT 546

PyMOL of 1kzh

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		588
2f48_A		555	Diphosphate--fructose-6-phosphate 1-phosphotransf;	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
2hig_A		487	6-phospho-1-fructokinase; transferase; 2.40A {Tryp	4e-14
3hno_A		419	Pyrophosphate-dependent phosphofructokinase; struc	7e-12
1pfk_A		320	Phosphofructokinase; transferase(phosphotransferas	5e-07
4a3s_A		319	6-phosphofructokinase; transferase, glycolysis, de	1e-06
1zxx_A		319	6-phosphofructokinase; allosteric regulation, lact	2e-06
3opy_A		989	6-phosphofructo-1-kinase alpha-subunit; ATP bindin	6e-05
3o8o_A		787	6-phosphofructokinase subunit alpha; transferase;	1e-04
3o8l_A		762	6-phosphofructokinase, muscle type; transferase; H	2e-04
3o8o_B		766	6-phosphofructokinase subunit beta; transferase; H	9e-04

>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555	Back alignment and structure

 Score =  573 bits (1479), Expect = 0.0
 Identities = 178/562 (31%), Positives = 287/562 (51%), Gaps = 53/562 (9%)

Query: 10  ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
             S  +Q R  Y P+LP  L+     +       T    D  ++   F +TYG P+  F 
Sbjct: 2   NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFT 61

Query: 70  RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
              + +      +   A+ +GI+  G  +PGGHNV+ G++DA+K  NP S L GF GG  
Sbjct: 62  EGESSL------SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115

Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
           GL     +E+T+ ++++Y+N GG+D++   + +I T E  N AL   K  NL+ ++IIGG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175

Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
             SNT+AA LAE F +     +V+GVP T++ DL+N  +E + GFD+  K+ S+LI N+C
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235

Query: 250 TDALS---------------------------AEKVILGEEVAASKLTLFDLTKQICDAV 282
            DA+S                               I+ EEV A K TL ++  ++   +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295

Query: 283 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV----------DNISSQL 332
             R+    N GV+++PEGLIE IPEV +L+ E+  +  +              +   ++L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355

Query: 333 SPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 389
           S +   ++  LP FI+ +L   +L+ +   +  +S++ TEKL   +++  +N   K G Y
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415

Query: 390 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 449
           KG  F  + HFFGY+ R + PS FD DY Y LG+    ++  GL GYM+ + NL      
Sbjct: 416 KGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474

Query: 450 WRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYR 509
           W  G  P+T +M ++            +P I  A VD+ G+ ++   +N  ++ L++LY 
Sbjct: 475 WIAGGVPLTMLMNMEE------RYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYL 528

Query: 510 NPGPVQFDGPGADAKAVTLCVE 531
            PGPVQ+ G       +T  ++
Sbjct: 529 YPGPVQYFGSSEIVDEITETLK 550

PyMOL of 2f48

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487	Back alignment and structure

>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419	Back alignment and structure

>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320	Back alignment and structure

>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319	Back alignment and structure

>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319	Back alignment and structure

>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989	Back alignment and structure

>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787	Back alignment and structure

>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762	Back alignment and structure

>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		588
2f48_A		555	Diphosphate--fructose-6-phosphate 1-phosphotransf;	100.0
2hig_A		487	6-phospho-1-fructokinase; transferase; 2.40A {Tryp	100.0
3hno_A		419	Pyrophosphate-dependent phosphofructokinase; struc	100.0
1zxx_A		319	6-phosphofructokinase; allosteric regulation, lact	100.0
1pfk_A		320	Phosphofructokinase; transferase(phosphotransferas	100.0
4a3s_A		319	6-phosphofructokinase; transferase, glycolysis, de	100.0
3o8l_A		762	6-phosphofructokinase, muscle type; transferase; H	100.0
3o8o_B		766	6-phosphofructokinase subunit beta; transferase; H	100.0
3o8o_A		787	6-phosphofructokinase subunit alpha; transferase;	100.0
3opy_B		941	6-phosphofructo-1-kinase beta-subunit; ATP binding	100.0
3opy_A		989	6-phosphofructo-1-kinase alpha-subunit; ATP bindin	100.0
3o8l_A		762	6-phosphofructokinase, muscle type; transferase; H	100.0
3o8o_A		787	6-phosphofructokinase subunit alpha; transferase;	100.0
3o8o_B		766	6-phosphofructokinase subunit beta; transferase; H	100.0
3opy_B		941	6-phosphofructo-1-kinase beta-subunit; ATP binding	100.0
3opy_A		989	6-phosphofructo-1-kinase alpha-subunit; ATP bindin	100.0
2an1_A		292	Putative kinase; structural genomics, PSI, protein	88.9
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	88.48
3l49_A		291	ABC sugar (ribose) transporter, periplasmic substr	81.28

>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*	Back alignment and structure

Probab=100.00  E-value=6.3e-122  Score=1016.16  Aligned_cols=510  Identities=35%  Similarity=0.652  Sum_probs=473.9

Q ss_pred             CCCChhhhhhhccCCCCCcCcCCCc--eeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCC
Q 007819            9 RELSGLQQLRSLYQPELPPCLQGTT--VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA   86 (588)
Q Consensus         9 ~~~s~lq~~R~~~~p~lp~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (588)
                      |++|+||++|+.|+|+||++|++..  ++++.++.+++.  .|+++|+++|||||++|.++|.++..   .   ...+++
T Consensus         1 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~---~---~~~~~~   72 (555)
T 2f48_A            1 MNTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES---S---LSFSKA   72 (555)
T ss_dssp             ---CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC---C---CSCCSC
T ss_pred             CCCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCc--cCHHHHHHhCccccCCCcEEEecCCc---c---cccCCC
Confidence            6799999999999999999999864  899999988875  89999999999999999999998752   1   135678


Q ss_pred             eEEEEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCCh
Q 007819           87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT  166 (588)
Q Consensus        87 ~~IgIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~  166 (588)
                      +||||++||||||||||||+|++++++..+++++||||++||+||+++++++|+++.++.|+++|||.+|||+|.+++++
T Consensus        73 ~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~  152 (555)
T 2f48_A           73 LNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETE  152 (555)
T ss_dssp             CEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSH
T ss_pred             cEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCH
Confidence            99999999999999999999999999888899999999999999999999999999999999999955999999999899


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 007819          167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS  246 (588)
Q Consensus       167 e~~~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~  246 (588)
                      +++++++++|++++||+||+||||||+++|+.|++++.+++++++||||||||||||+++.||+|||||||+++++++|+
T Consensus       153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId  232 (555)
T 2f48_A          153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIG  232 (555)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHhhhccc-eEEecccccc--------------------------cCChhhHHHHHHHHHHHHHHCCCCeEEEEEcC
Q 007819          247 NVCTDALSAEK-VILGEEVAAS--------------------------KLTLFDLTKQICDAVQARAEQDKNHGVILLPE  299 (588)
Q Consensus       247 nl~~dA~S~~k-vlI~Ee~~~~--------------------------~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpE  299 (588)
                      +|++||.|+++ ++|+|.||+.                          +++|.++++.||+.|++|+..|++|+||+|||
T Consensus       233 ~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaE  312 (555)
T 2f48_A          233 NLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPE  312 (555)
T ss_dssp             HHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99999999865 8888866542                          23456678999999999999999999999999


Q ss_pred             CCcCcchhHHHHHHHHHHHHhcCcc----------ccCccccCCchhhhhhccChhhHhhhhc---cCCCCCCCcccchh
Q 007819          300 GLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQI  366 (588)
Q Consensus       300 Gl~~~ipe~~~li~el~~~l~~~~~----------~~e~~~~ls~~~~~l~~~lp~~i~~qll---~~rD~~Gn~~ls~i  366 (588)
                      |+++++|+++.|++|++++++++..          ...+.++||||+.++|.++|..|++||+   .++|+|||+++++|
T Consensus       313 G~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i  392 (555)
T 2f48_A          313 GLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRV  392 (555)
T ss_dssp             TGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTS
T ss_pred             CCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccc
Confidence            9999999999999999998876411          0234567999999999999999999987   68999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 007819          367 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP  446 (588)
Q Consensus       367 ~te~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~  446 (588)
                      +||++|+++|+++|++++.++.|++. |++|+|+|||+||||.||+||+.||++||+.|++++++|.||+|++++|++.+
T Consensus       393 ~t~~~L~~~v~~~l~~~~~~~~~~~~-~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~  471 (555)
T 2f48_A          393 PTEKLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK  471 (555)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC
T ss_pred             cHHHHHHHHHHHHHHHHhcccCcccc-eeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            99999999999999999888999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCC--CCc
Q 007819          447 ANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAK  524 (588)
Q Consensus       447 ~~~w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~  524 (588)
                      +|+|++.++||++|||+|+ |+|     +.+|+|++++||++|++|++|+++|++|+++|+|||||||||+||.+  |++
T Consensus       472 ~~~w~~~~vPl~~~~n~ek-~~g-----~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~  545 (555)
T 2f48_A          472 PTDWIAGGVPLTMLMNMEE-RYG-----EKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEI  545 (555)
T ss_dssp             GGGCEEEEEEGGGGEEEEE-ETT-----EEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCC
T ss_pred             ccceEEEeeeHHHHhhhhh-hcC-----ccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCC
Confidence            9999999999999999998 888     88999999999999999999999999999999999999999999998  999


Q ss_pred             cceEEeccc
Q 007819          525 AVTLCVEDR  533 (588)
Q Consensus       525 ~~tl~~e~~  533 (588)
                      ++||.||+.
T Consensus       546 ~~tl~~e~~  554 (555)
T 2f48_A          546 TETLKLELF  554 (555)
T ss_dssp             CHHHHHHTC
T ss_pred             Cceeecccc
Confidence            999999864

PyMOL of 2f48

>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*	Back alignment and structure

>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A	Back alignment and structure

>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A	Back alignment and structure

>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*	Back alignment and structure

>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*	Back alignment and structure

>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}	Back alignment and structure

>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}	Back alignment and structure

>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*	Back alignment and structure

>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}	Back alignment and structure

>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*	Back alignment and structure

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		588
d2f48a1		550	c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho	1e-157
d4pfka_		319	c.89.1.1 (A:) ATP-dependent phosphofructokinase {B	8e-27
d1pfka_		320	c.89.1.1 (A:) ATP-dependent phosphofructokinase {E	5e-25
d1pfka_		320	c.89.1.1 (A:) ATP-dependent phosphofructokinase {E	0.001

>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  459 bits (1182), Expect = e-157
 Identities = 180/558 (32%), Positives = 286/558 (51%), Gaps = 55/558 (9%)

Query: 12  SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
           S  +Q R  Y P+LP  L+     +       T    D  ++   F +TYG P+  F   
Sbjct: 1   SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 60

Query: 72  TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
            + +          A+ +GI+  G  +PGGHNV+ G++DA+K  NP S L GF GG  GL
Sbjct: 61  ESSLS------FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 114

Query: 132 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
                +E+T+ ++++Y+N GG+D++   + +I T E  N AL   K  NL+ ++IIGG  
Sbjct: 115 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 174

Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
           SNT+AA LAE F +     +V+GVP T++ DL+N  +E + GFD+  K+ S+LI N+C D
Sbjct: 175 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 234

Query: 252 ALSAEK---------------------------VILGEEVAASKLTLFDLTKQICDAVQA 284
           A+S +K                            I+ EEV A K TL ++  ++   +  
Sbjct: 235 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 294

Query: 285 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSP 334
           R+    N GV+++PEGLIE IPEV +L+ E+  +  +              +   ++LS 
Sbjct: 295 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 354

Query: 335 WASALFEFLPPFIKKQLLLQPESDDS---AQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 391
           +   ++  LP FI+ +L+      D      +S++ TEKL   +++  +N   K G YKG
Sbjct: 355 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 414

Query: 392 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 451
             F  + HFFGY+ R + PS FD DY Y LG+    ++  GL GYM+ + NL      W 
Sbjct: 415 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 473

Query: 452 CGAAPITSMMTV-KRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRN 510
            G  P+T +M + +R+ +        +P I  A VD+ G+ ++   +N  ++ L++LY  
Sbjct: 474 AGGVPLTMLMNMEERYGEK-------KPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLY 526

Query: 511 PGPVQFDGPGADAKAVTL 528
           PGPVQ+ G       +T 
Sbjct: 527 PGPVQYFGSSEIVDEITE 544

PyMOL of d2f48a1

>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319	Back information, alignment and structure

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320	Back information, alignment and structure

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		588
d2f48a1		550	Pyrophosphate-dependent phosphofructokinase {Lyme	100.0
d4pfka_		319	ATP-dependent phosphofructokinase {Bacillus stearo	100.0
d1pfka_		320	ATP-dependent phosphofructokinase {Escherichia col	100.0
d1gsoa2		105	Glycinamide ribonucleotide synthetase (GAR-syn), N	86.15
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	81.61
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	81.11

>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=1.2e-127  Score=1059.22  Aligned_cols=505  Identities=35%  Similarity=0.665  Sum_probs=473.7

Q ss_pred             ChhhhhhhccCCCCCcCcCCC--ceeeecCCCcccCCCCChHHHhhhCCcccCCCceeEecCccCCCccccccCCCCeEE
Q 007819           12 SGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRV   89 (588)
Q Consensus        12 s~lq~~R~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I   89 (588)
                      |+||++|++|+|+||++|++.  .+++..++.+.++  .|+++|+++|||||++|.++|.++.+.      ....+++||
T Consensus         1 s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~~------~~~~~~~rI   72 (550)
T d2f48a1           1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGESS------LSFSKALNI   72 (550)
T ss_dssp             CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCCC------CSCCSCCEE
T ss_pred             CHhHHHHHhCCCCCChhHhCccceeeeccCCccccc--CCHHHHHHHhHHhcCCceeeeccCCCC------CCcCCCCEE
Confidence            899999999999999999874  3678888888776  899999999999999999999987641      234568999


Q ss_pred             EEEecCCCcccHHHHHHHHHHHHHhcCCCCEEEEEcCchhhhhcCCeEecCHhhHhchhhcCCccccccccCCCCChHHH
Q 007819           90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV  169 (588)
Q Consensus        90 gIv~sGG~aPG~NnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL~~~~~~eLt~~~v~~~~n~GGs~~lgS~R~k~~~~e~~  169 (588)
                      |||+|||||||+||||+|+++++++.+++++||||++||+||+++++++|+++.++.|+|+|||+++||+|+++++++++
T Consensus        73 gIl~sGG~aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~~~L~~~~v~~~~~~GG~~l~~s~r~~~~~~e~~  152 (550)
T d2f48a1          73 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHY  152 (550)
T ss_dssp             EEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHH
T ss_pred             EEECcCCCcHHHHHHHHHHHHHHHHhCCCCEEEEECcchHHhcCCCEEECCHHHHhhHHhCCCcEecCCCCCCCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 007819          170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC  249 (588)
Q Consensus       170 ~~i~~~l~~l~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~nl~  249 (588)
                      ++++++|++++||+||+||||||+++|+.|+|||++++++|+||||||||||||+++++|+|||||||+++++++|+|++
T Consensus       153 ~~i~~~l~~~~Id~LviIGGd~S~~~a~~Lae~~~~~~~~i~vigvPKTIDNDl~~~~~d~s~GfdTA~~~~~~~i~~l~  232 (550)
T d2f48a1         153 NKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC  232 (550)
T ss_dssp             HHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHHHHhCCCccEEEecccccCCCCCccccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             HHhhhccc-eEEeccc--------------------------ccccCChhhHHHHHHHHHHHHHHCCCCeEEEEEcCCCc
Q 007819          250 TDALSAEK-VILGEEV--------------------------AASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI  302 (588)
Q Consensus       250 ~dA~S~~k-vlI~Ee~--------------------------~~~~~tL~~iv~~i~~~I~~R~~~gk~~gvIlIpEGl~  302 (588)
                      +||.|+++ ++|+|.|                          ..++++|.+|++.|++.|++|+..|++||||+||||++
T Consensus       233 ~da~S~~~~~~~VevMGR~aG~lAl~~alat~a~~ilipE~~~~~~~~L~~i~~~i~~~I~kR~~~gk~~gvIvV~EGli  312 (550)
T d2f48a1         233 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLI  312 (550)
T ss_dssp             HHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGG
T ss_pred             HHHhhcccceEEEEEecCCCcHHHHHHHHhcCCceEEecccccchhhhHHHHHHHHHHHHHHHHHcCCCcEEEEecCccc
Confidence            99999765 4455544                          34456788999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhcCccc----------cCccccCCchhhhhhccChhhHhhhh---ccCCCCCCCcccchhhHH
Q 007819          303 ESIPEVYALLKEIHSLLRQGVPV----------DNISSQLSPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETE  369 (588)
Q Consensus       303 ~~ipe~~~li~el~~~l~~~~~~----------~e~~~~ls~~~~~l~~~lp~~i~~ql---l~~rD~~Gn~~ls~i~te  369 (588)
                      +++||++.|++|++++++++...          +.+..+|++|++++|.+||.+||+||   +.+||+|||+|+++|+||
T Consensus       313 ~~ipe~~~Li~el~~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~~~l~~~lp~~i~~qll~~~~~rD~~G~~~ls~I~~e  392 (550)
T d2f48a1         313 EFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTE  392 (550)
T ss_dssp             GTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHH
T ss_pred             ccchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcchhhhhhhhcccHHHHHHHhhcccccCCCCCeeeccccHH
Confidence            99999999999999998775321          23567899999999999999999999   568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcceeeEEecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCCc
Q 007819          370 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK  449 (588)
Q Consensus       370 ~ll~~~v~~~l~~~~~~g~y~g~~~~~~~~~lGy~~R~~~Ps~fD~~~a~~LG~~Av~li~~G~tG~mv~i~n~~~~~~~  449 (588)
                      +||+++|+++|.+++.++.|++. |++++|+|||+|||+.||+||+.|||+||+.|++++++|+||||++|+|++.++++
T Consensus       393 ~lLa~~V~~~L~~~~~~~~~~~~-f~~~~h~~GYe~R~a~PS~fD~~~a~~lG~~Av~~~~~G~tG~M~~I~~l~~~~~~  471 (550)
T d2f48a1         393 KLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD  471 (550)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGG
T ss_pred             HHHHHHHHHHHHHhhhhcccccc-eeeeecccccceeCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCce
Confidence            99999999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecchHhHhhhccccCCCCCCCCCcccccceEecCCChHHHHHHHHhhhcccCCcccCCcccccccCCC--CCccce
Q 007819          450 WRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGA--DAKAVT  527 (588)
Q Consensus       450 w~~~~iPl~~~~~~e~~~~g~~~~~~~~p~i~~~~Vdl~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~--~~~~~t  527 (588)
                      |+++++||++||++|+ |+|     +.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+  |.+|+|
T Consensus       472 w~~~~iPl~~~m~~e~-r~g-----~~~~~i~k~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~t  545 (550)
T d2f48a1         472 WIAGGVPLTMLMNMEE-RYG-----EKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITET  545 (550)
T ss_dssp             CEEEEEEGGGGEEEEE-ETT-----EEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHH
T ss_pred             eEECCccHHHHhhHHH-hcC-----CcCcceecceeCCCcHHHHHHHHHHHHHHhcCcCcCCCCcccCCchhhcccccch
Confidence            9999999999999998 888     88999999999999999999999999999999999999999999986  999999


Q ss_pred             EEec
Q 007819          528 LCVE  531 (588)
Q Consensus       528 l~~e  531 (588)
                      |.||
T Consensus       546 l~~e  549 (550)
T d2f48a1         546 LKLE  549 (550)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            9887

PyMOL of d2f48a1

>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure