Citrus Sinensis ID: 007957

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
MQFPEMKSSVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHcccccccEEEEEcccHHHHHHHHccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEccEEEEEEcccccccEEEEcccccccccccEEEEEEccccccccccccHHHHcccccccccccccEEEEccccccHHEEEHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEcccccccccccccccEEEEEEccHHHHHHHHcccc
cccccccccEEEccccHcHcHHccHHHHHHcccccccccccccHEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEHHHcccccccHccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHcccEEEEEcHHHEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHEEEEEcccccccHHHHHHEHcccccHHHHHHEEHHHcccEEcccHHHHHHHccccccccccccEEEEEEcccccEEEEEHHHEcccccccHEEccccHHHHHHHHHHHHHHcccccccccEEEEEEccEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEccccHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEccHHHHHHHHHccc
mqfpemkssvrffhspkqflplfnrthflsrqfpqfsrqFHSTTLRlcsagesqtvppvwsiygssiangvpessgnvnsqsssdfekpqvkkktnlglgdlvgtrkkgkanrtnwvcsdcgytdgqwwgmcracesvgtmkrysagesdegpvvqrtwlpqkpeevqpvRLLEVNkgmkqldwriplsglfgNEVARVLggglvpgslvliggdpgvgkSTLLLQMAAIIADvhdlgepspvvyvsgeesVEQIGNRADRMMIATEELFLYSSTDIEDIVekvqplspraliiDSIQTVYLRgvagsagglmQVKECTSALLRFAkktnipvllaghvtksgdiagprVLEHIVDAVLYMEGEKFSSYRLLRSVKnrfgstdelgvfemsqlglqavsnpskiflseqhsdsEFLAGLAVAVIMDGSRSFLIEIQALCVsgstvsrhvngiqASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSflefpipngiafigeiglGGELRMVSRMEKRVSTVAKLgyrkcivpksAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
mqfpemkssvrffhSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGVPESSGNVnsqsssdfekpqvkkktnlglgdlvgtrkkgkanrtnwvcsdcgytdgqWWGMCRACESVGTMKRysagesdegpvvqrtwlpqkpeevqpVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGhvtksgdiagpRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTvaklgyrkcivpkSAEKSLATLGFEQMefigcknlkevinvvfttp
MQFPEMKSSVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGVPEssgnvnsqsssDFEKPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARvlggglvpgslvliggDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
***********FFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSI********************************GDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY************RTWL******VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT**
*******SSVRFFHSPKQFLPLF******************************************************************************************TNWVCSDCGYTDGQWWGMCRACESVGTMK********************************************PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA*******GF*QMEFIGCKNLKEVINVVFTT*
*********VRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGV********************KKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKR**********VVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
******KSSVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSI******************F*KPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES*****************VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQFPEMKSSVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query583 2.2.26 [Sep-21-2011]
Q48761457 DNA repair protein RadA h yes no 0.730 0.932 0.426 3e-98
Q92F42457 DNA repair protein RadA h yes no 0.730 0.932 0.426 4e-98
P37572458 DNA repair protein RadA h yes no 0.761 0.969 0.423 3e-97
Q9KGG1457 DNA repair protein RadA h yes no 0.759 0.969 0.410 5e-97
Q9A1K1453 DNA repair protein RadA h N/A no 0.720 0.927 0.423 5e-92
Q8P2Q5453 DNA repair protein RadA h N/A no 0.720 0.927 0.423 5e-92
Q5XDZ7453 DNA repair protein RadA h N/A no 0.720 0.927 0.423 5e-92
P0DD79453 DNA repair protein RadA h yes no 0.720 0.927 0.420 1e-91
P0DD78453 DNA repair protein RadA h N/A no 0.720 0.927 0.420 1e-91
P74391505 DNA repair protein RadA h N/A no 0.730 0.843 0.415 2e-91
>sp|Q48761|RADA_LISMO DNA repair protein RadA homolog OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=radA PE=3 SV=2 Back     alignment and function desciption
 Score =  359 bits (922), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)

Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
            KA RT  +VC  CGY   +W G C  C     M                T  P K   +
Sbjct: 2   AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61

Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
             +     ++  K+++  +P       E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62  TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110

Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
           +A +   +       V+Y+SGEES++Q   RA+R+ ++ + L++Y+ T++E + E +  +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165

Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
            P  ++IDSIQTVY   V  +AG + QV+ECT+ L+R AK  NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225

Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
           PR+LEH+VD VLY EGE+  +YR+LR+VKNRFGST+E+G+FEM  +GL  V+NPS++FL 
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285

Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
           E+    E  +G  V   M+G+R  L+EIQAL          R   GI  ++  +I++VL 
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342

Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
           K+ GL LQ    +L    GV L E A DLAVA ++ SS+ + P  +   FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402

Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
           R V+R+E+RV   AKLG+++  +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
May play a role in the repair of endogenous alkylation damage.
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)
>sp|Q92F42|RADA_LISIN DNA repair protein RadA homolog OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|P37572|RADA_BACSU DNA repair protein RadA homolog OS=Bacillus subtilis (strain 168) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|Q9KGG1|RADA_BACHD DNA repair protein RadA homolog OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|Q9A1K1|RADA_STRP1 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype M1 GN=radA PE=3 SV=1 Back     alignment and function description
>sp|Q8P2Q5|RADA_STRP8 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|Q5XDZ7|RADA_STRP6 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|P0DD79|RADA_STRPQ DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|P0DD78|RADA_STRP3 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=radA PE=3 SV=1 Back     alignment and function description
>sp|P74391|RADA_SYNY3 DNA repair protein RadA homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=radA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
297743168583 unnamed protein product [Vitis vinifera] 0.965 0.965 0.689 0.0
225442424624 PREDICTED: DNA repair protein RadA homol 0.974 0.910 0.671 0.0
224059162525 predicted protein [Populus trichocarpa] 0.825 0.916 0.785 0.0
147856591647 hypothetical protein VITISV_033044 [Viti 0.957 0.862 0.609 0.0
356526069560 PREDICTED: DNA repair protein RadA homol 0.811 0.844 0.741 0.0
357513543643 DNA repair protein radA-like protein [Me 0.867 0.786 0.681 0.0
145359080587 ATP binding / damaged DNA binding / nucl 0.819 0.814 0.701 0.0
9758916484 DNA repair protein-like [Arabidopsis tha 0.794 0.956 0.705 0.0
449462910630 PREDICTED: DNA repair protein RadA homol 0.958 0.887 0.605 0.0
115466458619 Os06g0151600 [Oryza sativa Japonica Grou 0.847 0.798 0.660 0.0
>gi|297743168|emb|CBI36035.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/599 (68%), Positives = 467/599 (77%), Gaps = 36/599 (6%)

Query: 1   MQFPEMKSSVRFF-----HSPKQFLP--LFNRTHFLSRQFPQFSRQFHSTTLRLCSAGES 53
           MQ  +M++   F+      +PK+ +P  L     F S Q P+FSR F S       +G  
Sbjct: 1   MQISDMRALRTFYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRSQYSDRQESGSR 60

Query: 54  QTVPPVWSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGD--LVGTRKKGKA 111
                          +G   S  +VN    S  EK +   +  L   D  +V  RKKGK+
Sbjct: 61  ---------------SGAERSEVSVNKGFGS-VEKARFGGRYGLASSDGGVVRGRKKGKS 104

Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG----------PVVQRTWLP 161
            +  WVCSDCGY+DGQWWG CR C  VGTMK++SAGES  G            V R+WLP
Sbjct: 105 -KVCWVCSDCGYSDGQWWGACRECNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLP 163

Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
           Q+P EVQP+RL +VN+G+ Q++WRIPL G FG EVARVLGGGLVPGSLVL+GGDPG GKS
Sbjct: 164 QQPTEVQPLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKS 223

Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
           TLLLQ+AAIIA+ HD+G  SPVVYVSGEESVEQIGNRADRM I TEELFLYSSTDIEDI+
Sbjct: 224 TLLLQIAAIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDIL 283

Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
            +V  LSPRAL++DSIQTVYL+GV GSAGGL QVKECTSALLRFAKKTNIPV L GHVTK
Sbjct: 284 GQVHLLSPRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTK 343

Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
           SGDIAGPRVLEHIVD VLYMEGEK SS+RLLRSVKNRFGSTDELGVFEM+QLGLQ VSNP
Sbjct: 344 SGDIAGPRVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNP 403

Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMII 461
           S++FLSEQ+SDSE L GLAVAVIMDGSRSFL+EIQALC+SGSTV+R VNG+ ASRADMII
Sbjct: 404 SELFLSEQNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMII 463

Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
           +VLMKQAGLKLQ+N IFLNVVSGV L ETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL
Sbjct: 464 AVLMKQAGLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 523

Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
           GGELR V RMEKRV+TVAKLGY+KCIVPK+AEKSL TL    +E +GC+N+KEVIN VF
Sbjct: 524 GGELRTVPRMEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442424|ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059162|ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|222847004|gb|EEE84551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147856591|emb|CAN82495.1| hypothetical protein VITISV_033044 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526069|ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [Glycine max] Back     alignment and taxonomy information
>gi|357513543|ref|XP_003627060.1| DNA repair protein radA-like protein [Medicago truncatula] gi|355521082|gb|AET01536.1| DNA repair protein radA-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|145359080|ref|NP_199845.3| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] gi|110741561|dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gi|332008546|gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9758916|dbj|BAB09453.1| DNA repair protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449462910|ref|XP_004149178.1| PREDICTED: DNA repair protein RadA homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|115466458|ref|NP_001056828.1| Os06g0151600 [Oryza sativa Japonica Group] gi|53791424|dbj|BAD13707.2| RadA-like protein [Oryza sativa Japonica Group] gi|55296625|dbj|BAD69327.1| putative RadA [Oryza sativa Japonica Group] gi|55297278|dbj|BAD69063.1| putative RadA [Oryza sativa Japonica Group] gi|113594868|dbj|BAF18742.1| Os06g0151600 [Oryza sativa Japonica Group] gi|215736826|dbj|BAG95755.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
TAIR|locus:2177497587 AT5G50340 [Arabidopsis thalian 0.821 0.816 0.684 7.7e-174
TIGR_CMR|GSU_0285450 GSU_0285 "DNA repair protein R 0.610 0.791 0.437 1.1e-82
TIGR_CMR|BA_0081458 BA_0081 "DNA repair protein Ra 0.759 0.967 0.414 1.5e-81
TIGR_CMR|DET_0058462 DET_0058 "DNA repair protein R 0.607 0.766 0.437 1.9e-81
TIGR_CMR|ECH_0305450 ECH_0305 "DNA repair protein R 0.605 0.784 0.410 1.8e-76
TIGR_CMR|SO_1226454 SO_1226 "DNA repair protein Ra 0.765 0.982 0.372 5.7e-75
TIGR_CMR|CBU_1422451 CBU_1422 "DNA repair protein R 0.602 0.778 0.416 2.3e-74
UNIPROTKB|Q9X8L5469 Q9X8L5 "DNA repair protein rad 0.559 0.695 0.410 2.9e-74
TIGR_CMR|VC_2343459 VC_2343 "DNA repair protein Ra 0.759 0.965 0.373 3.6e-73
TIGR_CMR|CHY_2347444 CHY_2347 "DNA repair protein R 0.674 0.885 0.420 6.7e-72
TAIR|locus:2177497 AT5G50340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1689 (599.6 bits), Expect = 7.7e-174, P = 7.7e-174
 Identities = 339/495 (68%), Positives = 400/495 (80%)

Query:   100 GDLVGTR-KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAG-ESD------E 151
             G++V  + KKGK+ +T WVC  CG+++GQWWG CRAC  VGTMKR+S G ES        
Sbjct:    93 GEVVMNKSKKGKS-KTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGN 151

Query:   152 GPVVQRT------WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXX 205
             G  +  T      WLP++   VQP RL +V  G+ Q  WRI L GLFGNEVAR       
Sbjct:   152 GTGLGFTEGKGLSWLPEQAT-VQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLA 210

Query:   206 XXXXXXXXXDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265
                      DPG+GKSTLLLQ+A+IIA+  +L EP+PV+Y+SGEESVEQIG+RADRM I 
Sbjct:   211 PGSLILIGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQ 270

Query:   266 TEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325
             TEEL+L+SS+D++DI+ K   LSPRALIIDSIQTVYL+ V GSAGGL QVKECTS LLRF
Sbjct:   271 TEELYLFSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRF 330

Query:   326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDEL 385
             AKK+NIPV L GHVTK+GDIAGPRVLEHIVD VLY+EGE+ S+YRLLRSVKNRFGSTDEL
Sbjct:   331 AKKSNIPVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDEL 390

Query:   386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV 445
             GVFEM+  GL+ VSNPS I+LS+Q+ DS+ LAGLAVAV+MDGSRSFLIE+QALC  GSTV
Sbjct:   391 GVFEMANSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGSTV 450

Query:   446 SRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
             SRHVNG+QASRADMII+VLMKQAGL++QEN IFLNV +G+AL+ETAGDLA+AAAICSSFL
Sbjct:   451 SRHVNGVQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFL 510

Query:   506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQME 565
             EFPIP+G+AFIGEIGLGGE+R V RMEKRVSTVAKLG+ KC+VPKS E+SL  L  +++E
Sbjct:   511 EFPIPHGVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIE 570

Query:   566 FIGCKNLKEVINVVF 580
              IGCKNLKE+IN VF
Sbjct:   571 IIGCKNLKELINAVF 585
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003678 "DNA helicase activity" evidence=IEA
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0004176 "ATP-dependent peptidase activity" evidence=IEA
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IBA
GO:0006260 "DNA replication" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0009295 "nucleoid" evidence=IBA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
TIGR_CMR|GSU_0285 GSU_0285 "DNA repair protein RadA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0081 BA_0081 "DNA repair protein RadA" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0058 DET_0058 "DNA repair protein RadA" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0305 ECH_0305 "DNA repair protein RadA" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1226 SO_1226 "DNA repair protein RadA" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1422 CBU_1422 "DNA repair protein RadA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9X8L5 Q9X8L5 "DNA repair protein radA" [Streptomyces coelicolor A3(2) (taxid:100226)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2343 VC_2343 "DNA repair protein RadA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2347 CHY_2347 "DNA repair protein RadA" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.445.1
hypothetical protein (430 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CMS
SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC [...] (230 aa)
•       0.796
eugene3.27440001
Peptide exporter, ABC transporter family protein (648 aa)
      • 0.756
fgenesh4_pg.C_scaffold_11806000001
Predicted protein (423 aa)
•     • 0.723
fgenesh4_pg.C_scaffold_3239000001
Predicted protein (259 aa)
•     • 0.720
estExt_Genewise1_v1.C_LG_X6520
hypothetical protein (888 aa)
      • 0.714
gw1.I.8813.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC-4.6.1.12) (187 aa)
•       0.698
eugene3.55420001
annotation not avaliable (132 aa)
•     • 0.691
MCS
SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4. [...] (195 aa)
•       0.681
fgenesh4_pg.C_scaffold_1557000001
Predicted protein (206 aa)
•     • 0.680
grail3.3183000301
Predicted protein (109 aa)
•     • 0.640

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
PRK11823446 PRK11823, PRK11823, DNA repair protein RadA; Provi 0.0
COG1066456 COG1066, Sms, Predicted ATP-dependent serine prote 1e-176
cd01121372 cd01121, Sms, Sms (bacterial radA) DNA repair prot 1e-173
TIGR00416454 TIGR00416, sms, DNA repair protein RadA 1e-144
pfam13481154 pfam13481, AAA_25, AAA domain 1e-21
cd01120165 cd01120, RecA-like_NTPases, RecA-like NTPases 7e-16
smart00382148 smart00382, AAA, ATPases associated with a variety 1e-13
TIGR02902531 TIGR02902, spore_lonB, ATP-dependent protease LonB 3e-12
COG0467260 COG0467, RAD55, RecA-superfamily ATPases implicate 7e-11
cd00984242 cd00984, DnaB_C, DnaB helicase C terminal domain 2e-10
pfam06745231 pfam06745, KaiC, KaiC 2e-10
cd01393226 cd01393, recA_like, RecA is a bacterial enzyme whi 6e-09
cd01124187 cd01124, KaiC, KaiC is a circadian clock protein p 7e-09
COG0305435 COG0305, DnaB, Replicative DNA helicase [DNA repli 8e-09
pfam13541121 pfam13541, ChlI, Subunit ChlI of Mg-chelatase 8e-09
TIGR02237209 TIGR02237, recomb_radB, DNA repair and recombinati 2e-08
cd01123235 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B 2e-08
pfam03796260 pfam03796, DnaB_C, DnaB-like helicase C terminal d 6e-08
PRK09361225 PRK09361, radB, DNA repair and recombination prote 4e-07
COG0468279 COG0468, RecA, RecA/RadA recombinase [DNA replicat 5e-07
cd01125239 cd01125, repA, Hexameric Replicative Helicase RepA 8e-07
TIGR03881229 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE11 9e-07
TIGR03600420 TIGR03600, phage_DnaB, phage replicative helicase, 1e-06
TIGR00665434 TIGR00665, DnaB, replicative DNA helicase 3e-06
cd01122271 cd01122, GP4d_helicase, GP4d_helicase is a homohex 8e-06
COG3598402 COG3598, RepA, RecA-family ATPase [DNA replication 9e-06
PRK07773 886 PRK07773, PRK07773, replicative DNA helicase; Vali 6e-05
TIGR02903615 TIGR02903, spore_lon_C, ATP-dependent protease, Lo 8e-05
TIGR00764608 TIGR00764, lon_rel, lon-related putative ATP-depen 2e-04
COG1067647 COG1067, LonB, Predicted ATP-dependent protease [P 0.001
cd00009151 cd00009, AAA, The AAA+ (ATPases Associated with a 0.001
PRK09302509 PRK09302, PRK09302, circadian clock protein KaiC; 0.001
COG3854308 COG3854, SpoIIIAA, ncharacterized protein conserve 0.002
PRK05973237 PRK05973, PRK05973, replicative DNA helicase; Prov 0.003
COG2874235 COG2874, FlaH, Predicted ATPases involved in bioge 0.003
>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional Back     alignment and domain information 
 Score =  554 bits (1431), Expect = 0.0
 Identities = 205/473 (43%), Positives = 293/473 (61%), Gaps = 34/473 (7%)

Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
             +T +VC +CG    +W G C  C +  T+             V+     +        
Sbjct: 3   KKKTAYVCQECGAESPKWLGRCPECGAWNTL-------------VEEVAASKAGSSKPVQ 49

Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
            L ++    +    RI  +G+   E+ RVLGGGLVPGS+VLIGGDPG+GKSTLLLQ+AA 
Sbjct: 50  PLSDIEAEEEP---RIS-TGI--GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR 103

Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
           +A          V+YVSGEES  QI  RA+R+ + ++ L+L + T++E I+  ++   P 
Sbjct: 104 LAAAG-----GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158

Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
            ++IDSIQT+Y   +  + G + QV+EC + L+R AK+  I V L GHVTK G IAGPRV
Sbjct: 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRV 218

Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
           LEH+VD VLY EG++ S YR+LR+VKNRFG+T+E+GVFEM++ GL+ VSNPS++FLSE+ 
Sbjct: 219 LEHMVDTVLYFEGDRHSRYRILRAVKNRFGATNEIGVFEMTEQGLREVSNPSELFLSERD 278

Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQ 467
            +     G AV V M+G+R  L+EIQAL VS ++     R   G+ ++R  M+++VL K+
Sbjct: 279 ENV---PGSAVTVTMEGTRPLLVEIQAL-VSPTSFGNPRRTAVGLDSNRLAMLLAVLEKR 334

Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
            GL L +  +++NVV G+ +TE A DLAVA AI SS  + P+P      GE+GL GE+R 
Sbjct: 335 LGLPLGDQDVYVNVVGGLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEVGLTGEIRP 394

Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
           V R+E+R+   AKLG+++ IVPK         G   +E IG K L E + ++F
Sbjct: 395 VPRIERRLKEAAKLGFKRAIVPKGNLPKKPPKG---IEVIGVKTLAEALELLF 444

Length = 446
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>gnl|CDD|232966 TIGR00416, sms, DNA repair protein RadA Back     alignment and domain information
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain Back     alignment and domain information
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB Back     alignment and domain information
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238484 cd00984, DnaB_C, DnaB helicase C terminal domain Back     alignment and domain information
>gnl|CDD|219158 pfam06745, KaiC, KaiC Back     alignment and domain information
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>gnl|CDD|238544 cd01124, KaiC, KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>gnl|CDD|223382 COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|205719 pfam13541, ChlI, Subunit ChlI of Mg-chelatase Back     alignment and domain information
>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB Back     alignment and domain information
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B Back     alignment and domain information
>gnl|CDD|217733 pfam03796, DnaB_C, DnaB-like helicase C terminal domain Back     alignment and domain information
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238545 cd01125, repA, Hexameric Replicative Helicase RepA Back     alignment and domain information
>gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family Back     alignment and domain information
>gnl|CDD|213836 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>gnl|CDD|233080 TIGR00665, DnaB, replicative DNA helicase Back     alignment and domain information
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>gnl|CDD|226126 COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated Back     alignment and domain information
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family Back     alignment and domain information
>gnl|CDD|233120 TIGR00764, lon_rel, lon-related putative ATP-dependent protease Back     alignment and domain information
>gnl|CDD|223994 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>gnl|CDD|236461 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed Back     alignment and domain information
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|168322 PRK05973, PRK05973, replicative DNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 583
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 100.0
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 100.0
PRK11823446 DNA repair protein RadA; Provisional 100.0
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 100.0
TIGR00763775 lon ATP-dependent protease La. This protein is ind 100.0
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 100.0
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 100.0
TIGR00368 499 Mg chelatase-related protein. The N-terminal end m 100.0
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 100.0
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.97
PRK09862 506 putative ATP-dependent protease; Provisional 99.97
PF13541121 ChlI: Subunit ChlI of Mg-chelatase 99.97
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 99.96
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 99.95
PRK13765637 ATP-dependent protease Lon; Provisional 99.94
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 99.94
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 99.94
PRK04328249 hypothetical protein; Provisional 99.94
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 99.93
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 99.93
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 99.93
PRK09361225 radB DNA repair and recombination protein RadB; Pr 99.93
PF05362204 Lon_C: Lon protease (S16) C-terminal proteolytic d 99.93
PLN03186342 DNA repair protein RAD51 homolog; Provisional 99.92
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 99.92
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 99.92
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 99.92
PHA02542473 41 41 helicase; Provisional 99.92
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 99.91
TIGR02236310 recomb_radA DNA repair and recombination protein R 99.91
cd01394218 radB RadB. The archaeal protein radB shares simila 99.91
COG0606 490 Predicted ATPase with chaperone activity [Posttran 99.91
TIGR02237209 recomb_radB DNA repair and recombination protein R 99.91
PTZ00035337 Rad51 protein; Provisional 99.91
PRK04301317 radA DNA repair and recombination protein RadA; Va 99.9
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 99.9
PRK09302509 circadian clock protein KaiC; Reviewed 99.9
cd01393226 recA_like RecA is a bacterial enzyme which has rol 99.9
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 99.9
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 99.9
PRK09165497 replicative DNA helicase; Provisional 99.89
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 99.89
PRK06067234 flagellar accessory protein FlaH; Validated 99.89
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 99.89
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 99.89
TIGR00665434 DnaB replicative DNA helicase. This model describe 99.89
PRK08760476 replicative DNA helicase; Provisional 99.89
PRK08006471 replicative DNA helicase; Provisional 99.89
PRK06321472 replicative DNA helicase; Provisional 99.89
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 99.88
PRK09302509 circadian clock protein KaiC; Reviewed 99.88
cd00983325 recA RecA is a bacterial enzyme which has roles in 99.88
PRK05595444 replicative DNA helicase; Provisional 99.88
PRK06904472 replicative DNA helicase; Validated 99.87
PRK09354349 recA recombinase A; Provisional 99.87
PRK05748448 replicative DNA helicase; Provisional 99.87
PRK07004460 replicative DNA helicase; Provisional 99.87
PRK08506472 replicative DNA helicase; Provisional 99.87
PRK06749428 replicative DNA helicase; Provisional 99.87
PRK08840464 replicative DNA helicase; Provisional 99.87
PRK05636505 replicative DNA helicase; Provisional 99.87
TIGR02653675 Lon_rel_chp conserved hypothetical protein. This m 99.87
TIGR02012321 tigrfam_recA protein RecA. This model describes or 99.87
PRK08533230 flagellar accessory protein FlaH; Reviewed 99.84
COG0305435 DnaB Replicative DNA helicase [DNA replication, re 99.82
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 99.8
cd01124187 KaiC KaiC is a circadian clock protein primarily f 99.79
PRK09519 790 recA DNA recombination protein RecA; Reviewed 99.78
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 99.77
PRK05973237 replicative DNA helicase; Provisional 99.77
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 99.72
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 99.7
PF00154322 RecA: recA bacterial DNA recombination protein; In 99.69
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 99.65
COG1067647 LonB Predicted ATP-dependent protease [Posttransla 99.64
KOG1434335 consensus Meiotic recombination protein Dmc1 [Cell 99.63
PRK07773 886 replicative DNA helicase; Validated 99.62
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 99.54
KOG1564351 consensus DNA repair protein RHP57 [Replication, r 99.52
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 99.44
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 99.4
COG1126240 GlnQ ABC-type polar amino acid transport system, A 99.35
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 99.34
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 99.34
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 99.3
PRK13537306 nodulation ABC transporter NodI; Provisional 99.28
PRK13536340 nodulation factor exporter subunit NodI; Provision 99.25
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 99.25
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 99.24
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 99.24
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 99.23
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 99.23
COG4586325 ABC-type uncharacterized transport system, ATPase 99.22
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 99.22
COG1136226 SalX ABC-type antimicrobial peptide transport syst 99.22
cd03216163 ABC_Carb_Monos_I This family represents the domain 99.21
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 99.21
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 99.21
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 99.21
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 99.2
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 99.2
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 99.2
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 99.2
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 99.19
COG1750 579 Archaeal serine proteases [General function predic 99.19
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 99.19
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 99.19
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 99.19
cd03246173 ABCC_Protease_Secretion This family represents the 99.18
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 99.18
cd03268208 ABC_BcrA_bacitracin_resist The BcrA subfamily repr 99.18
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 99.18
cd03298211 ABC_ThiQ_thiamine_transporter ABC-type thiamine tr 99.17
COG1118345 CysA ABC-type sulfate/molybdate transport systems, 99.17
PRK11153343 metN DL-methionine transporter ATP-binding subunit 99.17
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 99.17
COG1127263 Ttg2A ABC-type transport system involved in resist 99.17
cd03267236 ABC_NatA_like Similar in sequence to NatA, this is 99.16
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 99.16
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 99.16
COG4152300 ABC-type uncharacterized transport system, ATPase 99.16
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 99.16
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 99.16
cd03269210 ABC_putative_ATPase This subfamily is involved in 99.15
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 99.15
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 99.15
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 99.14
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 99.14
PRK10908222 cell division protein FtsE; Provisional 99.14
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 99.14
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 99.14
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 99.13
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 99.13
COG3845501 ABC-type uncharacterized transport systems, ATPase 99.13
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 99.13
cd03215182 ABC_Carb_Monos_II This family represents domain II 99.13
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 99.13
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 99.13
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 99.12
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 99.12
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 99.12
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 99.12
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 99.12
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 99.11
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 99.11
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 99.11
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 99.11
cd03218232 ABC_YhbG The ABC transporters belonging to the Yhb 99.11
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 99.1
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 99.1
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 99.1
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 99.1
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 99.1
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 99.1
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 99.09
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 99.09
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 99.09
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 99.09
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 99.09
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 99.09
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 99.09
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 99.09
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 99.09
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 99.09
PRK11300255 livG leucine/isoleucine/valine transporter ATP-bin 99.09
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 99.09
PRK09984262 phosphonate/organophosphate ester transporter subu 99.09
PF07088484 GvpD: GvpD gas vesicle protein; InterPro: IPR00978 99.08
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 99.08
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 99.08
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 99.08
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 99.08
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 99.08
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 99.08
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 99.08
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 99.08
PRK09536402 btuD corrinoid ABC transporter ATPase; Reviewed 99.08
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 99.08
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 99.08
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 99.08
cd03219236 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans 99.07
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 99.07
PRK10070400 glycine betaine transporter ATP-binding subunit; P 99.07
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 99.07
PRK10771232 thiQ thiamine transporter ATP-binding subunit; Pro 99.07
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 99.07
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 99.07
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 99.07
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 99.07
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 99.07
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 99.06
PRK11629233 lolD lipoprotein transporter ATP-binding subunit; 99.06
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 99.06
PRK10253265 iron-enterobactin transporter ATP-binding protein; 99.06
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 99.06
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 99.05
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 99.05
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 99.05
PRK04296190 thymidine kinase; Provisional 99.05
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 99.05
TIGR03415382 ABC_choXWV_ATP choline ABC transporter, ATP-bindin 99.05
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 99.05
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 99.05
PRK10247225 putative ABC transporter ATP-binding protein YbbL; 99.05
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 99.05
PRK10619257 histidine/lysine/arginine/ornithine transporter su 99.05
cd03299235 ABC_ModC_like Archeal protein closely related to M 99.04
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 99.04
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 99.04
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 99.04
KOG1433326 consensus DNA repair protein RAD51/RHP55 [Replicat 99.04
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 99.04
COG1123539 ATPase components of various ABC-type transport sy 99.04
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 99.04
PRK11607377 potG putrescine transporter ATP-binding subunit; P 99.04
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 99.04
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 99.04
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 99.04
TIGR012572272 rim_protein retinal-specific rim ABC transporter. 99.03
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 99.03
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 99.03
PRK11614237 livF leucine/isoleucine/valine transporter ATP-bin 99.03
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 99.03
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 99.03
COG3638258 ABC-type phosphate/phosphonate transport system, A 99.03
COG4619223 ABC-type uncharacterized transport system, ATPase 99.03
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 99.03
PRK11124242 artP arginine transporter ATP-binding subunit; Pro 99.02
COG3840231 ThiQ ABC-type thiamine transport system, ATPase co 99.02
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 99.02
TIGR03411242 urea_trans_UrtD urea ABC transporter, ATP-binding 99.02
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 99.02
PRK09473330 oppD oligopeptide transporter ATP-binding componen 99.02
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 99.02
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 99.01
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 99.01
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 99.01
COG1129500 MglA ABC-type sugar transport system, ATPase compo 99.01
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 99.01
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 99.01
COG1123539 ATPase components of various ABC-type transport sy 99.01
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 99.0
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 99.0
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 98.99
cd03220224 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo 98.99
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 98.99
PRK10938490 putative molybdenum transport ATP-binding protein 98.98
cd03234226 ABCG_White The White subfamily represents ABC tran 98.98
COG3842352 PotA ABC-type spermidine/putrescine transport syst 98.98
PRK13543214 cytochrome c biogenesis protein CcmA; Provisional 98.98
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 98.98
TIGR03740223 galliderm_ABC gallidermin-class lantibiotic protec 98.98
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 98.98
COG0411250 LivG ABC-type branched-chain amino acid transport 98.97
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 98.97
cd03253236 ABCC_ATM1_transporter ATM1 is an ABC transporter t 98.97
COG1245591 Predicted ATPase, RNase L inhibitor (RLI) homolog 98.97
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 98.97
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 98.97
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 98.97
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 98.96
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 98.95
cd03252237 ABCC_Hemolysin The ABC-transporter hemolysin B is 98.95
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 98.95
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 98.95
COG0410237 LivF ABC-type branched-chain amino acid transport 98.95
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 98.94
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 98.94
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 98.93
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 98.93
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 98.93
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 98.93
COG4598256 HisP ABC-type histidine transport system, ATPase c 98.93
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 98.93
PRK10762501 D-ribose transporter ATP binding protein; Provisio 98.93
PRK14242253 phosphate transporter ATP-binding protein; Provisi 98.93
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 98.93
PRK10261623 glutathione transporter ATP-binding protein; Provi 98.93
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 98.92
PRK03695248 vitamin B12-transporter ATPase; Provisional 98.92
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 98.92
PRK14235267 phosphate transporter ATP-binding protein; Provisi 98.92
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 98.91
TIGR02324224 CP_lyasePhnL phosphonate C-P lyase system protein 98.91
COG4559259 ABC-type hemin transport system, ATPase component 98.91
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 98.91
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 98.9
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 98.9
COG4604252 CeuD ABC-type enterochelin transport system, ATPas 98.9
PRK09700510 D-allose transporter ATP-binding protein; Provisio 98.9
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 98.9
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 98.9
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 98.89
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 98.89
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 98.89
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 98.89
TIGR01978243 sufC FeS assembly ATPase SufC. SufC is part of the 98.89
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 98.89
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 98.89
PRK14240250 phosphate transporter ATP-binding protein; Provisi 98.89
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 98.89
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 98.89
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 98.89
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 98.88
COG4172534 ABC-type uncharacterized transport system, duplica 98.88
PRK14239252 phosphate transporter ATP-binding protein; Provisi 98.88
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 98.88
PRK14238271 phosphate transporter ATP-binding protein; Provisi 98.88
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 98.88
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 98.87
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 98.87
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 98.87
PRK13409590 putative ATPase RIL; Provisional 98.87
PRK13546264 teichoic acids export protein ATP-binding subunit; 98.87
PRK10261 623 glutathione transporter ATP-binding protein; Provi 98.87
cd03250204 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. 98.86
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 98.86
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 98.86
PRK10762501 D-ribose transporter ATP binding protein; Provisio 98.86
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 98.86
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 98.85
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 98.85
COG4148352 ModC ABC-type molybdate transport system, ATPase c 98.85
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 98.85
PRK11288501 araG L-arabinose transporter ATP-binding protein; 98.85
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 98.84
PRK14244251 phosphate ABC transporter ATP-binding protein; Pro 98.84
PRK13539207 cytochrome c biogenesis protein CcmA; Provisional 98.84
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 98.84
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 98.84
PRK13545 549 tagH teichoic acids export protein ATP-binding sub 98.84
cd03290218 ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec 98.84
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 98.84
PRK09700510 D-allose transporter ATP-binding protein; Provisio 98.83
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 98.82
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 98.82
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 98.82
smart00382148 AAA ATPases associated with a variety of cellular 98.82
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 98.82
PRK14237267 phosphate transporter ATP-binding protein; Provisi 98.81
PRK14236272 phosphate transporter ATP-binding protein; Provisi 98.81
PRK13409590 putative ATPase RIL; Provisional 98.81
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 98.81
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 98.8
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 98.8
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 98.8
PRK14243264 phosphate transporter ATP-binding protein; Provisi 98.8
COG4167267 SapF ABC-type antimicrobial peptide transport syst 98.8
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 98.8
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 98.8
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 98.8
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 98.79
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 98.79
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 98.79
PRK10636638 putative ABC transporter ATP-binding protein; Prov 98.78
CHL00131252 ycf16 sulfate ABC transporter protein; Validated 98.78
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 98.78
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 98.77
TIGR01187325 potA spermidine/putrescine ABC transporter ATP-bin 98.77
PRK15064530 ABC transporter ATP-binding protein; Provisional 98.77
PRK09580248 sufC cysteine desulfurase ATPase component; Review 98.77
PRK11288501 araG L-arabinose transporter ATP-binding protein; 98.77
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 98.77
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 98.77
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 98.76
PRK10790592 putative multidrug transporter membrane\ATP-bindin 98.76
PRK14241258 phosphate transporter ATP-binding protein; Provisi 98.75
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 98.74
PLN03211 659 ABC transporter G-25; Provisional 98.74
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 98.74
cd03288257 ABCC_SUR2 The SUR domain 2. The sulfonylurea recep 98.74
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 98.74
PRK10522547 multidrug transporter membrane component/ATP-bindi 98.73
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 98.73
TIGR02203571 MsbA_lipidA lipid A export permease/ATP-binding pr 98.73
PRK10636 638 putative ABC transporter ATP-binding protein; Prov 98.73
PRK10938490 putative molybdenum transport ATP-binding protein 98.72
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 98.71
TIGR02204576 MsbA_rel ABC transporter, permease/ATP-binding pro 98.71
PRK15064530 ABC transporter ATP-binding protein; Provisional 98.71
PLN03073718 ABC transporter F family; Provisional 98.7
TIGR01194555 cyc_pep_trnsptr cyclic peptide transporter. This m 98.7
COG2884223 FtsE Predicted ATPase involved in cell division [C 98.69
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 98.69
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 98.69
COG0488530 Uup ATPase components of ABC transporters with dup 98.69
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 98.69
KOG0061 613 consensus Transporter, ABC superfamily (Breast can 98.69
COG4175386 ProV ABC-type proline/glycine betaine transport sy 98.69
PRK11147635 ABC transporter ATPase component; Reviewed 98.69
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 98.68
COG0488530 Uup ATPase components of ABC transporters with dup 98.67
TIGR01846694 type_I_sec_HlyB type I secretion system ABC transp 98.67
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 98.67
PLN03073718 ABC transporter F family; Provisional 98.67
PRK11147 635 ABC transporter ATPase component; Reviewed 98.67
PRK11160574 cysteine/glutathione ABC transporter membrane/ATP- 98.67
PRK11819 556 putative ABC transporter ATP-binding protein; Revi 98.65
COG4618580 ArpD ABC-type protease/lipase transport system, AT 98.65
COG4181228 Predicted ABC-type transport system involved in ly 98.65
TIGR00955 617 3a01204 The Eye Pigment Precursor Transporter (EPP 98.65
COG4987573 CydC ABC-type transport system involved in cytochr 98.65
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 98.65
PRK10789569 putative multidrug transporter membrane\ATP-bindin 98.65
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 98.64
COG1119257 ModF ABC-type molybdenum transport system, ATPase 98.64
COG1117253 PstB ABC-type phosphate transport system, ATPase c 98.63
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 98.62
COG4988559 CydD ABC-type transport system involved in cytochr 98.62
TIGR01842544 type_I_sec_PrtD type I secretion system ABC transp 98.62
COG3480342 SdrC Predicted secreted protein containing a PDZ d 98.62
COG4172534 ABC-type uncharacterized transport system, duplica 98.6
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 98.6
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 98.6
KOG0059885 consensus Lipid exporter ABCA1 and related protein 98.59
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 98.59
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 98.58
PRK10535 648 macrolide transporter ATP-binding /permease protei 98.57
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 98.56
cd03270226 ABC_UvrA_I The excision repair protein UvrA domain 98.55
PLN032321495 ABC transporter C family member; Provisional 98.55
PF13479213 AAA_24: AAA domain 98.55
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 98.55
PRK11819556 putative ABC transporter ATP-binding protein; Revi 98.54
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 98.54
PLN031301622 ABC transporter C family member; Provisional 98.54
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 98.52
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 98.52
cd03272243 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein 98.51
COG4615546 PvdE ABC-type siderophore export system, fused ATP 98.51
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 98.51
cd03275247 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein 98.48
cd03227162 ABC_Class2 ABC-type Class 2 contains systems invol 98.47
COG4525259 TauB ABC-type taurine transport system, ATPase com 98.47
TIGR009571522 MRP_assoc_pro multi drug resistance-associated pro 98.47
cd03240204 ABC_Rad50 The catalytic domains of Rad50 are simil 98.47
cd03278197 ABC_SMC_barmotin Barmotin is a tight junction-asso 98.46
TIGR012711490 CFTR_protein cystic fibrosis transmembrane conduct 98.46
PLN03140 1470 ABC transporter G family member; Provisional 98.45
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 98.45
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 98.45
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 98.45
KOG0062582 consensus ATPase component of ABC transporters wit 98.45
TIGR00954659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 98.44
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 98.44
PLN03140 1470 ABC transporter G family member; Provisional 98.43
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.43
KOG0057591 consensus Mitochondrial Fe/S cluster exporter, ABC 98.43
COG1137243 YhbG ABC-type (unclassified) transport system, ATP 98.43
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 98.41
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 98.41
cd03271261 ABC_UvrA_II The excision repair protein UvrA domai 98.41
COG1101263 PhnK ABC-type uncharacterized transport system, AT 98.4
PTZ002651466 multidrug resistance protein (mdr1); Provisional 98.4
PTZ002431560 ABC transporter; Provisional 98.4
COG4133209 CcmA ABC-type transport system involved in cytochr 98.39
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 98.39
cd03279213 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex 98.37
COG4161242 ArtP ABC-type arginine transport system, ATPase co 98.37
COG4674249 Uncharacterized ABC-type transport system, ATPase 98.37
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 98.36
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 98.35
cd03276198 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein 98.33
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 98.31
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 98.3
COG4136213 ABC-type uncharacterized transport system, ATPase 98.29
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.29
KOG2355291 consensus Predicted ABC-type transport, ATPase com 98.29
PRK12377248 putative replication protein; Provisional 98.28
PF13173128 AAA_14: AAA domain 98.28
COG2401593 ABC-type ATPase fused to a predicted acetyltransfe 98.24
PRK07952244 DNA replication protein DnaC; Validated 98.24
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 98.23
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 98.22
PLN03232 1495 ABC transporter C family member; Provisional 98.22
PRK06921266 hypothetical protein; Provisional 98.21
PRK08181269 transposase; Validated 98.19
PF00004132 AAA: ATPase family associated with various cellula 98.19
PRK06893229 DNA replication initiation factor; Validated 98.18
PLN03130 1622 ABC transporter C family member; Provisional 98.18
PRK09183259 transposase/IS protein; Provisional 98.17
PF00005137 ABC_tran: ABC transporter This structure is on hol 98.16
COG4778235 PhnL ABC-type phosphonate transport system, ATPase 98.15
COG1245591 Predicted ATPase, RNase L inhibitor (RLI) homolog 98.15
cd03285222 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS 98.15
COG4178604 ABC-type uncharacterized transport system, permeas 98.15
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 98.14
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 98.14
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 98.13
KOG00541381 consensus Multidrug resistance-associated protein/ 98.13
PTZ00243 1560 ABC transporter; Provisional 98.12
PRK08727233 hypothetical protein; Validated 98.1
PRK08116268 hypothetical protein; Validated 98.09
cd03239178 ABC_SMC_head The structural maintenance of chromos 98.07
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 98.07
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 98.07
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 98.07
PRK06526254 transposase; Provisional 98.06
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 98.05
PRK08939306 primosomal protein DnaI; Reviewed 98.05
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-111  Score=870.15  Aligned_cols=447  Identities=47%  Similarity=0.786  Sum_probs=413.3

Q ss_pred             CceeECCCCCCCCccceecCCccccccccccccccCCCCCC--ccccccCCCCCCCcCceecccccccccccccccccCC
Q 007957          113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP--VVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG  190 (583)
Q Consensus       113 ~~~~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~Ri~t~G  190 (583)
                      |+.|+|++|||.++||+||||+|++|||++|+....+....  .....+..  ....++.++.++...   ...|++| |
T Consensus         5 ~t~f~C~~CG~~s~KW~GkCp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~---~~~Ri~t-g   78 (456)
T COG1066           5 KTAFVCQECGYVSPKWLGKCPACGAWNTLVEEVLAASPGGAPNKRRSGKAG--SEPSKVLKLSDIELE---EEPRIST-G   78 (456)
T ss_pred             ccEEEcccCCCCCccccccCCCCCCccceEEeecccccccccccccccccc--CCcccceeeccceee---ecccccC-C
Confidence            58999999999999999999999999999998643221110  01111111  011345678777754   3579998 8


Q ss_pred             CChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccc
Q 007957          191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELF  270 (583)
Q Consensus       191 i~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~  270 (583)
                      +  .||||+||||+++|++++|+|+||+|||||++|++..++..      ++|||+|+|||..|++.|++|++++.++++
T Consensus        79 ~--~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~------~~vLYVsGEES~~QiklRA~RL~~~~~~l~  150 (456)
T COG1066          79 I--EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR------GKVLYVSGEESLQQIKLRADRLGLPTNNLY  150 (456)
T ss_pred             h--HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc------CcEEEEeCCcCHHHHHHHHHHhCCCccceE
Confidence            8  99999999999999999999999999999999999999974      389999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccc
Q 007957          271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV  350 (583)
Q Consensus       271 i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~  350 (583)
                      ++.++++++|++.+++.+|+++||||||++|.++.++.+|+..|+|+++..|+++||++|+++|+++|+||+|.++||+.
T Consensus       151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrv  230 (456)
T COG1066         151 LLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRV  230 (456)
T ss_pred             EehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCce
Q 007957          351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRS  430 (583)
Q Consensus       351 Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~  430 (583)
                      +|||+|+|++|++++...+|.||.+|||||+++|+++|+|++.||.++.|||++|++++..   ..+|+++.++++|+||
T Consensus       231 LEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~---~~~GS~v~~~~EGtRp  307 (456)
T COG1066         231 LEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGE---QTPGSAVVVVMEGTRP  307 (456)
T ss_pred             eeeeeeEEEEEeccCCCceeeeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCC---CCCCcEEEEEEecccc
Confidence            9999999999999999999999999999999999999999999999999999999999984   4899999999999999


Q ss_pred             eEEEEEEEeecC--CCceEEEechhHHHHHHHHHHHHHhcCCCcccccEEEEecCCcccccccccHHHHHHHHHcccCCC
Q 007957          431 FLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP  508 (583)
Q Consensus       431 ~lVEvqalv~~~--~~p~~~~~G~~~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~  508 (583)
                      ++||||||++++  +.|+|.++|+|.||+.+++|+++|++|+++.++|+|||++||+++++|++|||+|+||+||+.++|
T Consensus       308 llvEvQALv~~s~~~nPrR~~~G~D~nRl~mllAVLek~~gl~l~~~DvyvnvaGG~ki~EPAaDLAva~Al~SS~~~~~  387 (456)
T COG1066         308 LLVEIQALVSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLPLGDQDVYVNVAGGVKVTEPAADLAVALALVSSFRNRP  387 (456)
T ss_pred             eEEEeeeccccccCCCCceEEeccChhHHHHHHHHHHHhcCCcccCccEEEEccCCEecCCchHHHHHHHHHHHHhcCCC
Confidence            999999999996  469999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957          509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT  581 (583)
Q Consensus       509 ~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~~  581 (583)
                      +|++++|+|||||+||||||+.+..|++||+++|||++|+|+.|..     ..+++++++|+++.|++++++.
T Consensus       388 lp~~~v~~GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~-----~~~~~~~~~v~~l~~a~~~~~~  455 (456)
T COG1066         388 LPQDTVVFGEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP-----LPEGIKVIGVSTLAEALEVVFD  455 (456)
T ss_pred             CCCCeEEEEeeccCceeeecCcHHHHHHHHHHcCCCEEEccCCcCC-----CCCCceEEEechHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999975     2468999999999999998864

>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PF13541 ChlI: Subunit ChlI of Mg-chelatase Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06749 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR02653 Lon_rel_chp conserved hypothetical protein Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair] Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>COG1750 Archaeal serine proteases [General function prediction only] Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP Back     alignment and domain information
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10908 cell division protein FtsE; Provisional Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair] Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL Back     alignment and domain information
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01978 sufC FeS assembly ATPase SufC Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>cd03290 ABCC_SUR1_N The SUR domain 1 Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>CHL00131 ycf16 sulfate ABC transporter protein; Validated Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>cd03288 ABCC_SUR2 The SUR domain 2 Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] Back     alignment and domain information
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains Back     alignment and domain information
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends Back     alignment and domain information
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
1xhk_A187 Crystal Structure Of M. Jannaschii Lon Proteolytic 5e-05
>pdb|1XHK|A Chain A, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain Length = 187 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 492 GDLAVAA---AICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIV 548
           GD A AA   AI S+ L+ P+    A  G + L G +  +  + +++    + G+++ I+
Sbjct: 95  GDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVII 154
Query: 549 PKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
           P++    +  +  E +E I  K L E++ +VF
Sbjct: 155 PEA--NXIDVIETEGIEIIPVKTLDEIVPLVF 184

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
2cvh_A220 DNA repair and recombination protein RADB; filamen 6e-78
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 4e-59
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 5e-58
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 2e-47
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 2e-44
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 7e-45
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 6e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 3e-09
2z43_A324 DNA repair and recombination protein RADA; archaea 1e-08
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 3e-08
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 3e-08
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 8e-08
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 9e-08
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 1e-07
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 1e-06
2r6a_A454 DNAB helicase, replicative helicase; replication, 3e-05
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 4e-05
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 5e-05
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 6e-05
3bs4_A260 Uncharacterized protein PH0321; structural genomic 1e-04
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 1e-04
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Length = 220 Back     alignment and structure
 Score =  244 bits (626), Expect = 6e-78
 Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 40/238 (16%)

Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
           G K LD               +LGGG  PG L  + G    GK+TL LQ   +       
Sbjct: 5   GTKSLD--------------SLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSG----- 45

Query: 238 GEPSPVVYVSGEE--SVEQIGNRADRMMIATEE----LFLYSSTDIEDIVEKVQPLSP-- 289
                V YV  E   S E++   A+   +  EE      L++ +D ++    +  L    
Sbjct: 46  ---KKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTV 102

Query: 290 ----RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD- 344
                 +++DSI   Y R     +G + ++      LL  A+K NIPV++   V      
Sbjct: 103 DSNFALVVVDSITAHY-RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161

Query: 345 ----IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
                   + L +    +L ++       R+    ++RF     +  F +++ G++ V
Sbjct: 162 EMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235 Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525 Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Length = 349 Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324 Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Length = 343 Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Length = 503 Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Length = 322 Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Length = 243 Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Length = 296 Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Length = 454 Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Length = 444 Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Length = 315 Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Length = 338 Back     alignment and structure
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Length = 260 Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 100.0
1xhk_A187 Putative protease LA homolog; LON protease, ATP de 100.0
1rre_A200 ATP-dependent protease LA; catalytic Ser-Lys DYAD, 100.0
1z0w_A207 Putative protease LA homolog type; ATP-dependent p 100.0
2x36_A207 LON protease homolog, mitochondrial; hydrolase, ca 100.0
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 100.0
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 99.96
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 99.95
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 99.94
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 99.94
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 99.93
2cvh_A220 DNA repair and recombination protein RADB; filamen 99.93
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 99.93
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 99.93
2z43_A324 DNA repair and recombination protein RADA; archaea 99.92
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 99.92
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 99.92
4a74_A231 DNA repair and recombination protein RADA; hydrola 99.92
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 99.92
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 99.92
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 99.92
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 99.91
2r6a_A454 DNAB helicase, replicative helicase; replication, 99.91
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.91
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 99.91
1u94_A356 RECA protein, recombinase A; homologous recombinat 99.9
1xp8_A366 RECA protein, recombinase A; recombination, radior 99.9
3io5_A333 Recombination and repair protein; storage dimer, i 99.9
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 99.9
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 99.89
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 99.89
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 99.89
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.89
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 99.89
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 99.84
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 99.84
3bs4_A260 Uncharacterized protein PH0321; structural genomic 99.72
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 99.62
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 99.34
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 99.33
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 99.31
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 99.27
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 99.25
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 99.25
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 99.25
1g6h_A257 High-affinity branched-chain amino acid transport 99.24
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 99.24
1b0u_A262 Histidine permease; ABC transporter, transport pro 99.2
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 99.2
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 99.19
1ji0_A240 ABC transporter; ATP binding protein, structural g 99.18
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 99.15
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 99.15
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 99.15
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 99.14
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 99.14
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 99.14
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 99.14
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 99.13
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 99.12
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 99.1
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 99.1
1oxx_K353 GLCV, glucose, ABC transporter, ATP binding protei 99.09
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 99.07
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 99.07
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 99.05
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 99.0
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 98.99
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 98.98
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 98.97
1sgw_A214 Putative ABC transporter; structural genomics, P p 98.97
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 98.96
2ghi_A260 Transport protein; multidrug resistance protein, M 98.92
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 98.91
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 98.9
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 98.89
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 98.89
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 98.86
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 98.85
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 98.85
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 98.84
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 98.83
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 98.82
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 98.82
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 98.82
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 98.81
3ozx_A 538 RNAse L inhibitor; ATP binding cassette protein, h 98.8
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 98.74
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 98.72
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 98.71
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 98.71
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 98.71
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.7
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 98.65
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.6
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 98.48
3g5u_A1284 MCG1178, multidrug resistance protein 1A; P-glycop 98.47
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 98.44
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 98.43
3ux8_A 670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 98.42
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 98.41
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 98.41
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 98.39
2vf7_A842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 98.39
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 98.33
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 98.32
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 98.32
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 98.29
2og2_A359 Putative signal recognition particle receptor; nuc 98.26
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 98.24
4aby_A415 DNA repair protein RECN; hydrolase, double strand 98.24
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 98.22
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 98.18
2eyu_A261 Twitching motility protein PILT; pilus retraction 98.18
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 98.16
2r6f_A972 Excinuclease ABC subunit A; UVRA, nucleotide excis 98.16
3pih_A916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 98.14
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 98.14
2ygr_A993 Uvrabc system protein A; hydrolase, nucleotide exc 98.14
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 98.14
3bos_A242 Putative DNA replication factor; P-loop containing 98.12
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 98.11
1c9k_A180 COBU, adenosylcobinamide kinase; alpha/beta struct 98.08
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 98.08
1e69_A322 Chromosome segregation SMC protein; structural mai 98.05
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 98.04
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 98.04
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 98.04
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 98.02
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 98.02
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 98.01
1vma_A306 Cell division protein FTSY; TM0570, structural gen 98.01
3qf7_A365 RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. 98.0
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 98.0
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 97.99
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 97.99
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 97.98
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 97.98
2npi_A460 Protein CLP1; CLP1-PCF11 complex, ATP binding, ter 97.98
2ewv_A372 Twitching motility protein PILT; pilus retraction 97.96
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 97.94
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 97.94
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 97.9
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 97.89
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 97.88
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 97.88
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 97.88
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 97.87
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 97.86
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 97.86
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 97.83
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 97.82
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 97.81
2v1u_A387 Cell division control protein 6 homolog; DNA repli 97.79
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 97.78
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 97.77
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 97.76
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 97.76
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 97.75
2qgz_A308 Helicase loader, putative primosome component; str 97.74
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 97.74
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 97.74
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 97.74
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 97.73
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 97.7
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 97.67
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 97.65
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 97.63
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 97.61
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 97.59
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 97.57
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 97.57
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 97.57
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 97.56
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 97.56
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 97.52
2fna_A357 Conserved hypothetical protein; structural genomic 97.49
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 97.48
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 97.46
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 97.44
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 97.43
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 97.39
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 97.38
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 97.38
2chg_A226 Replication factor C small subunit; DNA-binding pr 97.36
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 97.34
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 97.33
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 97.32
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 97.31
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 97.29
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 97.26
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 97.25
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 97.24
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 97.23
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 97.21
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 97.21
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 97.19
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 97.15
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 97.13
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 97.12
2xxa_A433 Signal recognition particle protein; protein trans 97.12
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 97.09
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 97.07
2pnl_A203 Protease VP4; acyl-enzyme, Ser/Lys DYAD, viral pro 97.06
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 97.01
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 97.01
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 96.98
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 96.97
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 96.96
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 96.94
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 96.93
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 96.92
2r62_A268 Cell division protease FTSH homolog; ATPase domain 96.92
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 96.9
3co5_A143 Putative two-component system transcriptional RES 96.84
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 96.83
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 96.82
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 96.81
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.81
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 96.79
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 96.79
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 96.78
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 96.78
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 96.73
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 96.72
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 96.71
2ius_A512 DNA translocase FTSK; nucleotide-binding, chromoso 96.69
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 96.68
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 96.67
2gef_A217 Protease VP4; birnavirus, serine/lysine DYAD mecha 96.6
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 96.59
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 96.58
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 96.56
3ice_A422 Transcription termination factor RHO; transcriptio 96.54
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 96.53
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 96.51
1ojl_A304 Transcriptional regulatory protein ZRAR; response 96.47
3szr_A 608 Interferon-induced GTP-binding protein MX1; interf 96.45
3pvs_A447 Replication-associated recombination protein A; ma 96.45
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 96.44
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 96.44
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 96.41
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 96.41
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 96.38
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 96.35
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 96.34
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.34
2www_A349 Methylmalonic aciduria type A protein, mitochondri 96.34
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 96.32
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 96.31
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 96.3
2chq_A319 Replication factor C small subunit; DNA-binding pr 96.24
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 96.24
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 96.23
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 96.22
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 96.21
1f2t_B148 RAD50 ABC-ATPase; DNA double-strand break repair, 96.19
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 96.18
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.18
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 96.16
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 96.16
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 96.15
1xjc_A169 MOBB protein homolog; structural genomics, midwest 96.14
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 96.13
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 96.12
2oap_1511 GSPE-2, type II secretion system protein; hexameri 96.11
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 96.11
2oze_A298 ORF delta'; para, walker type atpases, DNA segrega 96.1
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 96.07
1g3q_A237 MIND ATPase, cell division inhibitor; alpha-beta-a 96.03
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 96.02
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 95.98
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 95.97
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 95.97
3vaa_A199 Shikimate kinase, SK; structural genomics, center 95.97
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 95.95
1p9r_A418 General secretion pathway protein E; bacterial typ 95.94
1hyq_A263 MIND, cell division inhibitor (MIND-1); MINC, FTSZ 95.93
3fkq_A373 NTRC-like two-domain protein; RER070207001320, str 95.86
3q9l_A260 Septum site-determining protein MIND; ATPase, bact 95.86
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 95.85
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.83
1kag_A173 SKI, shikimate kinase I; transferase, structural g 95.82
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 95.78
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 95.75
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 95.75
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 95.7
3r20_A233 Cytidylate kinase; structural genomics, seattle st 95.7
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.68
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 95.68
2gno_A305 DNA polymerase III, gamma subunit-related protein; 95.62
1tue_A212 Replication protein E1; helicase, replication, E1E 95.6
2axn_A 520 6-phosphofructo-2-kinase/fructose-2,6- biphosphata 95.59
2iut_A574 DNA translocase FTSK; nucleotide-binding, chromoso 95.54
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 95.52
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 95.5
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 95.5
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 95.49
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 95.41
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 95.4
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 95.4
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 95.38
3kta_A182 Chromosome segregation protein SMC; structural mai 95.35
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 95.34
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 95.34
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 95.32
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 95.26
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 95.26
3l0o_A427 Transcription termination factor RHO; helicase, RH 95.23
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 95.2
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 95.2
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 95.19
3k9g_A267 PF-32 protein; ssgcid, SBRI, decode biostructures, 95.17
3cr8_A552 Sulfate adenylyltranferase, adenylylsulfate kinase 95.16
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 95.14
2hf9_A226 Probable hydrogenase nickel incorporation protein 95.13
3of5_A228 Dethiobiotin synthetase; structural genomics, cent 95.1
2qe7_A502 ATP synthase subunit alpha; blockage of ATP hydrol 95.08
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 95.08
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 95.05
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 95.04
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 95.01
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 94.97
3b6e_A216 Interferon-induced helicase C domain-containing P; 94.96
1yrb_A262 ATP(GTP)binding protein; GTPase, P-loop, rossman f 94.96
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 94.96
3qxc_A242 Dethiobiotin synthetase; DTBS, structural genomics 94.95
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 94.91
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 94.91
3end_A307 Light-independent protochlorophyllide reductase ir 94.85
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 94.84
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 94.83
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 94.81
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 94.8
3bor_A237 Human initiation factor 4A-II; translation initiat 94.77
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 94.75
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 94.75
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.74
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 94.73
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 94.71
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 94.69
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 94.69
3qkt_A339 DNA double-strand break repair RAD50 ATPase; RECA- 94.66
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 94.64
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 94.63
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 94.62
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 94.61
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 94.57
2xj4_A286 MIPZ; replication, cell division, ATPase, WACA; 1. 94.56
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 94.54
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 94.53
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 94.5
4a8j_A361 Elongator complex protein 4; transcription; 2.10A 94.48
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 94.41
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 94.39
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 94.31
3igf_A374 ALL4481 protein; two-domained protein consisting o 94.31
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 94.27
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 94.27
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 94.27
3euj_A483 Chromosome partition protein MUKB, linker; MUKB, M 94.25
2r9v_A515 ATP synthase subunit alpha; TM1612, structural gen 94.24
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 94.21
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 94.2
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 94.2
2vli_A183 Antibiotic resistance protein; transferase, tunica 94.18
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 94.16
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 94.15
1cp2_A269 CP2, nitrogenase iron protein; oxidoreductase; 1.9 94.13
1via_A175 Shikimate kinase; structural genomics, transferase 94.13
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 94.13
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 94.12
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 94.07
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 94.07
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 94.07
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 94.07
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 94.03
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 94.03
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 94.01
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 93.99
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 93.95
2ck3_A510 ATP synthase subunit alpha\, mitochondrial; hydrol 93.94
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 93.92
3zq6_A324 Putative arsenical pump-driving ATPase; tail-ancho 93.9
3kjh_A254 CO dehydrogenase/acetyl-COA synthase complex, acce 93.9
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 93.9
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 93.89
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 93.84
3fgn_A251 Dethiobiotin synthetase; biotin biosynthesis, BIOD 93.82
1yks_A440 Genome polyprotein [contains: flavivirin protease 93.82
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 93.81
6rxn_A46 Rubredoxin; electron transfer(iron-sulfur protein) 93.8
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 93.79
3vr4_A600 V-type sodium ATPase catalytic subunit A; V-ATPase 93.79
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 93.73
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 93.72
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 93.72
3fwy_A314 Light-independent protochlorophyllide reductase I 93.72
2afh_E289 Nitrogenase iron protein 1; nitrogen fixation, iro 93.71
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 93.7
3oaa_A513 ATP synthase subunit alpha; rossmann fold, hydrola 93.67
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 93.66
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 93.65
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 93.63
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 93.62
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 93.59
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 93.52
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 93.5
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 93.39
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 93.38
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 93.38
1bif_A469 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; 93.36
3ld9_A223 DTMP kinase, thymidylate kinase; ssgcid, NIH, niai 93.35
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 93.35
3bfv_A271 CAPA1, CAPB2, membrane protein CAPA1, protein tyro 93.35
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 93.34
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 93.3
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 93.26
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 93.24
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 93.24
3tlx_A243 Adenylate kinase 2; structural genomics, structura 93.22
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 93.22
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 93.22
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 93.21
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 93.2
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 93.19
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 93.16
3cio_A299 ETK, tyrosine-protein kinase ETK; WZC, escherichia 93.15
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 93.14
2gmg_A105 Hypothetical protein PF0610; winged-helix like pro 93.14
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 93.12
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 93.07
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 93.06
1ihu_A589 Arsenical pump-driving ATPase; aluminum fluoride, 93.06
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 93.03
1ihu_A 589 Arsenical pump-driving ATPase; aluminum fluoride, 93.02
1fx0_A507 ATP synthase alpha chain; latent ATPase, thermal s 93.02
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 92.98
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 92.97
1f2t_A149 RAD50 ABC-ATPase; DNA double-strand break repair, 92.96
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 92.96
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 92.93
3ug7_A349 Arsenical pump-driving ATPase; tail-anchored, memb 92.91
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 92.88
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 92.87
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 92.84
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 92.8
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 92.78
2woj_A354 ATPase GET3; tail-anchored, membrane protein, targ 92.78
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 92.74
2ph1_A262 Nucleotide-binding protein; alpha-beta protein, st 92.67
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 92.62
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 92.62
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 92.61
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 92.61
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 92.6
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 92.52
1wcv_1257 SOJ, segregation protein; ATPase, bacterial, chrom 92.47
2kdx_A119 HYPA, hydrogenase/urease nickel incorporation prot 92.47
2woo_A329 ATPase GET3; tail-anchored, membrane protein, targ 92.46
3io3_A348 DEHA2D07832P; chaperone, membrane traffic, ATPase; 92.43
3tqf_A181 HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co 92.4
3ea0_A245 ATPase, para family; alpha-beta-alpha sandwich, st 92.38
3iqw_A334 Tail-anchored protein targeting factor GET3; ATPas 92.37
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 92.33
2dy1_A 665 Elongation factor G; translocation, GTP complex, s 92.26
3mfy_A588 V-type ATP synthase alpha chain; A-type ATP syntha 92.25
2wji_A165 Ferrous iron transport protein B homolog; membrane 92.21
3cwq_A209 Para family chromosome partitioning protein; alpha 92.14
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 92.14
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 92.13
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 92.09
2ygr_A 993 Uvrabc system protein A; hydrolase, nucleotide exc 91.99
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 91.99
2k2d_A79 Ring finger and CHY zinc finger domain- containing 91.99
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 91.96
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 91.93
2o5v_A359 DNA replication and repair protein RECF; ABC ATPas 91.86
1vq8_Z83 50S ribosomal protein L37AE; ribosome 50S, protein 91.84
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 91.84
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 91.8
3a43_A139 HYPD, hydrogenase nickel incorporation protein HYP 91.75
2r6f_A 972 Excinuclease ABC subunit A; UVRA, nucleotide excis 91.72
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 91.67
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 91.67
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 91.65
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 91.63
1nij_A318 Hypothetical protein YJIA; structural genomics, P- 91.62
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 91.6
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 91.58
2kn9_A81 Rubredoxin; metalloprotein, ssgcid, structural gen 91.58
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 91.54
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 91.44
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 91.4
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 91.38
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 91.37
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 91.37
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 91.34
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 91.33
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 91.27
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
Probab=100.00  E-value=3.6e-39  Score=358.91  Aligned_cols=194  Identities=16%  Similarity=0.234  Sum_probs=173.6

Q ss_pred             ceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHH--
Q 007957          386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMI--  460 (583)
Q Consensus       386 ~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~--  460 (583)
                      ..+.|+...+..+.+++.++.+....  ...+|.+.+++|+|.++.+|+|||++++ |.|++++||++   ++|++++  
T Consensus       325 ~~~~It~~~l~~~Lg~~~~~~e~~~~--~~~~g~v~g~a~~~~~g~~~~ve~~~~~-g~~~~~~~G~~~~~~~es~~~a~  401 (543)
T 3m6a_A          325 KRITVTEKNLQDFIGKRIFRYGQAET--EDQVGVVTGLAYTTVGGDTLSIEVSLSP-GKGKLILTGKLGDVMRESAQAAF  401 (543)
T ss_dssp             SCCEECTTTTHHHHCSCCSCCSTTTC--CCBSSEEEEEEEETTEEEEEEEEEEEES-SCSCEEEEESCCHHHHHHHHHHH
T ss_pred             cceecCHHHHHHHhCCcccCchhhhc--cccccccccccccCCCccceeeEEEeeC-CCCceEEecCchHHHHHHHHHHH
Confidence            34567778888888888887754332  4578999999999999999999999999 78999999996   7888765  


Q ss_pred             --HHHHHHhcCCC---cccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHH
Q 007957          461 --ISVLMKQAGLK---LQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR  534 (583)
Q Consensus       461 --v~~~~k~~g~~---~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~  534 (583)
                        ++++.+++|++   |+++|||||++|| ++|+||++|||||+||+||+.++|++.+++|+|||+|+|+||||+|+.+|
T Consensus       402 ~~v~~~~~~~g~~~~~~~~~di~v~~~~g~~~k~gpsa~l~ia~ai~s~~~~~~~~~~~~~~GEi~L~G~v~~v~g~~~~  481 (543)
T 3m6a_A          402 SYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEK  481 (543)
T ss_dssp             HHHTSSCGGGSSCSSCTTTCEEEEEECTTBCGGGGGGGHHHHHHHHHHHHTSCCBCTTCEECCEECTTCBEECCSCHHHH
T ss_pred             HHHHHHHHHcCCCccccCCcceEEEeCCCCCCCCCchhHHHHHHHHHHHccCCCCCCCEEEEEEEcCCceEEeeCCHHHH
Confidence              88888999999   9999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCEEEEeCCChhhhh---hcCCCCcEEEEeCCHHHHHHHhhcC
Q 007957          535 VSTVAKLGYRKCIVPKSAEKSLA---TLGFEQMEFIGCKNLKEVINVVFTT  582 (583)
Q Consensus       535 i~~A~~~G~k~~ivP~~n~~e~~---~~~~~~i~v~~v~~l~e~~~~l~~~  582 (583)
                      +.+|+++||+++|+|++|.+++.   +...++++|++|+++.||+++++..
T Consensus       482 ~~~a~~~g~~~~iiP~~n~~~~~~~~~~~~~~~~i~~v~~l~e~~~~~~~~  532 (543)
T 3m6a_A          482 ALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALVG  532 (543)
T ss_dssp             HHHHHHTTCSBEEEEGGGGGGGGGSCHHHHTSCBCCEESBHHHHHHHHBC-
T ss_pred             HHHHHHCCCCEEEECHHHHHHHHhhHHHHhCCCEEEEeCCHHHHHHHHHhc
Confidence            99999999999999999988742   3345689999999999999998754
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10 Back     alignment and structure
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A* Back     alignment and structure
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A Back     alignment and structure
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2pnl_A Protease VP4; acyl-enzyme, Ser/Lys DYAD, viral protease, substrate complex, product complex, hydrolase; 2.21A {Infectious pancreatic necrosis virus} PDB: 2pnm_A 3rbp_A 3r0b_A Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2gef_A Protease VP4; birnavirus, serine/lysine DYAD mechamism, lysine general base, hydrolase; 2.20A {Blotched snakehead virus} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Back     alignment and structure
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Back     alignment and structure
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Back     alignment and structure
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Back     alignment and structure
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Back     alignment and structure
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Back     alignment and structure
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Back     alignment and structure
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A* Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Back     alignment and structure
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82 Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Back     alignment and structure
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Back     alignment and structure
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Back     alignment and structure
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Back     alignment and structure
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Back     alignment and structure
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Back     alignment and structure
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Back     alignment and structure
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Back     alignment and structure
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 583
d1nlfa_274 c.37.1.11 (A:) Hexameric replicative helicase repA 2e-35
d1tf7a2242 c.37.1.11 (A:256-497) Circadian clock protein KaiC 2e-34
d1tf7a1242 c.37.1.11 (A:14-255) Circadian clock protein KaiC 3e-29
d1pzna2254 c.37.1.11 (A:96-349) DNA repair protein Rad51, cat 3e-24
d2i1qa2258 c.37.1.11 (A:65-322) DNA repair protein Rad51, cat 3e-24
d1szpa2251 c.37.1.11 (A:145-395) DNA repair protein Rad51, ca 4e-24
d1n0wa_242 c.37.1.11 (A:) DNA repair protein Rad51, catalytic 3e-23
d1v5wa_258 c.37.1.11 (A:) Meiotic recombination protein DMC1/ 1e-22
d1u94a1263 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {E 1e-18
d1cr2a_277 c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), 2e-14
d1rrea_182 d.14.1.10 (A:) ATP-dependent protease Lon (La), ca 7e-13
d1mo6a1269 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {M 2e-09
d1xp8a1268 c.37.1.11 (A:15-282) RecA protein, ATPase-domain { 2e-06
d1ye8a1178 c.37.1.11 (A:1-178) Hypothetical kinase-like prote 7e-04
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (331), Expect = 2e-35
 Identities = 41/286 (14%), Positives = 82/286 (28%), Gaps = 60/286 (20%)

Query: 168 QPVRLLE-VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
           +P+ +LE        LD+               +   +V G++  +    G GKS L LQ
Sbjct: 4   KPINILEAFAAAPPPLDY---------------VLPNMVAGTVGALVSPGGAGKSMLALQ 48

Query: 227 MAAIIADVHDLG-----EPSPVVYVSGEESVEQIGNRADRMMIA---------TEELFLY 272
           +AA IA   DL         PV+Y+  E+    I +R   +             + L + 
Sbjct: 49  LAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQ 108

Query: 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG----LMQVKECTSALLRFAKK 328
                   +   +         +  + + L  +             + +    +   A  
Sbjct: 109 PLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 168

Query: 329 TNIPVLLAGHVTKSGDIAGPRV----------LEHIVDAVLYM-------------EGEK 365
           T   ++   H +K   + G             L   +    Y+             + ++
Sbjct: 169 TGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQ 228

Query: 366 FSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
              +      K  +G+      F     G   V  P+ +    +  
Sbjct: 229 RRFFVRFGVSKANYGAPFADRWFRRHDGG---VLKPAVLERQRKSK 271
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254 Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258 Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Length = 263 Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 Back     information, alignment and structure
>d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Escherichia coli [TaxId: 562]} Length = 182 Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 269 Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Length = 268 Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
d1xhka_185 ATP-dependent protease Lon (La), catalytic domain 99.97
d1rrea_182 ATP-dependent protease Lon (La), catalytic domain 99.96
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 99.94
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 99.92
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 99.92
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 99.9
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 99.89
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 99.89
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 99.86
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 99.85
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 99.85
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 99.85
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 99.84
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 99.82
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 99.43
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 99.42
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 99.39
d2awna2232 Maltose transport protein MalK, N-terminal domain 99.39
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 99.38
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 99.36
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 99.34
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 99.34
d1g2912240 Maltose transport protein MalK, N-terminal domain 99.33
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 99.3
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 99.29
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 99.27
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 99.23
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 99.2
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 99.19
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 99.15
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 99.07
d2hyda1255 Putative multidrug export ATP-binding/permease pro 99.05
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 98.93
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 98.86
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.58
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 98.22
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 98.14
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 98.12
d1okkd2207 GTPase domain of the signal recognition particle r 98.07
d2qy9a2211 GTPase domain of the signal recognition particle r 98.04
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.97
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 97.96
d1vmaa2213 GTPase domain of the signal recognition particle r 97.9
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 97.81
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 97.79
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.78
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 97.63
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 97.62
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 97.55
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 97.48
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 97.45
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 97.42
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 97.36
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 97.34
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 97.17
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 97.15
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 97.15
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 97.12
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 96.97
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.96
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 96.95
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 96.93
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 96.88
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.83
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 96.82
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 96.76
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 96.75
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 96.67
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 96.65
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 96.64
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 96.62
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.61
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.54
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.45
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 96.44
d1c9ka_180 Adenosylcobinamide kinase/adenosylcobinamide phosp 96.43
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.41
d1g5ta_157 ATP:corrinoid adenosyltransferase CobA {Salmonella 96.39
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 96.36
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 96.36
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 96.35
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 96.35
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 96.34
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 96.3
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 96.21
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 96.21
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.2
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 96.2
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 96.14
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 96.11
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.09
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 96.08
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 96.07
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 96.04
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 96.01
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 96.0
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 95.97
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 95.97
d1svma_362 Papillomavirus large T antigen helicase domain {Si 95.89
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 95.87
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 95.82
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 95.8
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.79
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 95.75
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 95.71
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 95.65
d2jdia3285 Central domain of alpha subunit of F1 ATP synthase 95.6
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 95.58
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 95.46
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 95.44
d1xpua3289 Transcription termination factor Rho, ATPase domai 95.4
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 95.38
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 95.34
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 95.27
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 95.27
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 95.19
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 95.17
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 95.1
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 95.03
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 94.98
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 94.96
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 94.93
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 94.86
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 94.72
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 94.72
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 94.67
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 94.66
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 94.65
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 94.64
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 94.59
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 94.57
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 94.54
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 94.52
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 94.46
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 94.42
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 94.23
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 94.23
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 94.19
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 94.19
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 94.18
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 94.15
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 94.14
d1nnqa237 Rubrerythrin, C-terminal domain {Archaeon Pyrococc 93.87
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 93.84
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 93.82
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 93.82
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 93.69
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 93.68
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 93.51
d1yuza236 Nigerythrin, C-terminal domain {Desulfovibrio vulg 93.36
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.19
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 93.17
d6rxna_45 Rubredoxin {Desulfovibrio desulfuricans, strain 27 93.14
d2dsxa152 Rubredoxin {Desulfovibrio gigas [TaxId: 879]} 93.04
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 92.99
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 92.83
d1brfa_53 Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2 92.74
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 92.69
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 92.67
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 92.59
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 92.48
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 92.42
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 92.31
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 92.23
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 92.22
d1iroa_53 Rubredoxin {Clostridium pasteurianum [TaxId: 1501] 92.11
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 92.05
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 91.9
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 91.88
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 91.87
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 91.79
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 91.78
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 91.78
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 91.73
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 91.71
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 91.69
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 91.68
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 91.62
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 91.61
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 91.6
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 91.5
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 91.49
d1nrjb_209 Signal recognition particle receptor beta-subunit 91.39
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 91.36
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 91.32
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 91.31
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.26
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 91.25
d1lkoa244 Rubrerythrin, C-terminal domain {Desulfovibrio vul 91.19
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.16
d1s24a_56 Two-iron rubredoxin {Pseudomonas oleovorans [TaxId 91.15
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 91.15
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 91.14
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 91.13
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 91.09
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 91.09
d1dx8a_70 Rubredoxin {Guillardia theta [TaxId: 55529]} 91.07
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 91.02
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 90.95
d2fh5b1207 Signal recognition particle receptor beta-subunit 90.92
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 90.92
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 90.91
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 90.88
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 90.86
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 90.83
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 90.76
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 90.73
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 90.72
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 90.72
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 90.71
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 90.7
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 90.62
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 90.59
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 90.58
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 90.47
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 90.4
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 90.39
d1g7sa4227 Initiation factor IF2/eIF5b, N-terminal (G) domain 90.38
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 90.32
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 90.32
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 90.28
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 90.28
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 90.21
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 90.2
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 90.19
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 90.17
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 90.11
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 90.04
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 90.02
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 89.97
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 89.9
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 89.83
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 89.8
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 89.76
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 89.71
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 89.69
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 89.58
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 89.36
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 89.32
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 89.24
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 89.23
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 89.23
d1tuea_205 Replication protein E1 helicase domain {Human papi 89.19
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 89.18
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 89.11
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 89.1
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 89.02
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 88.93
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 88.91
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 88.86
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 88.84
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 88.64
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 88.34
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 88.34
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 88.17
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 88.14
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 88.09
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 87.99
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 87.93
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 87.71
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 87.65
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 87.41
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 86.96
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 86.66
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 86.62
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 86.6
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 86.59
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 86.38
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 86.09
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 85.89
d2gmga1105 Hypothetical protein PF0610 {Pyrococcus furiosus [ 85.61
g1qhh.1 623 DEXX box DNA helicase {Bacillus stearothermophilus 85.43
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 85.29
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 84.62
d1d2ea3196 Elongation factor Tu (EF-Tu), N-terminal (G) domai 84.51
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 83.6
d1jj2y_73 Ribosomal protein L37ae {Archaeon Haloarcula maris 83.26
d2zjrz158 Ribosomal protein L32p {Deinococcus radiodurans [T 83.26
d1vqoz173 Ribosomal protein L37ae {Archaeon Haloarcula maris 83.19
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 82.42
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 82.04
d1n0ua2341 Elongation factor 2 (eEF-2), N-terminal (G) domain 80.67
>d1xhka_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: ATP-dependent protease Lon (La), catalytic domain
domain: ATP-dependent protease Lon (La), catalytic domain
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.6e-30  Score=247.77  Aligned_cols=166  Identities=20%  Similarity=0.388  Sum_probs=141.7

Q ss_pred             ccccceEEEEEEcCC--ceeEEEEEEEeecCCCceEEEechh---HH----HHHHHHHHHHHhcC-------CCcccccE
Q 007957          414 EFLAGLAVAVIMDGS--RSFLIEIQALCVSGSTVSRHVNGIQ---AS----RADMIISVLMKQAG-------LKLQENAI  477 (583)
Q Consensus       414 ~~~~G~~~s~~~~G~--~~~lVEvqalv~~~~~p~~~~~G~~---~~----~~~~~v~~~~k~~g-------~~~~~~dI  477 (583)
                      |+..|.+.+++|.+.  .+.+++|++.+..+..|....+|+.   .+    +++.+++.+.++.+       ++|+++||
T Consensus         1 e~~iG~vnGLav~~~G~~G~~~~i~v~i~~~~~~g~~~~~~~G~v~keS~~~A~~~v~~~~~~~~~~~~~~~~~~~~~di   80 (185)
T d1xhka_           1 EPKVGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEI   80 (185)
T ss_dssp             CCBTTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCHHHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEEE
T ss_pred             CCceEEEEEEEEECCCCCCceEEEEEEEEecCCCCcceEeeccccchHHHHHHHHHHHHHHHhhCcCCCccccccchhee
Confidence            357899999999854  4688888888877433555555552   33    45667777776654       45678999


Q ss_pred             EEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhh
Q 007957          478 FLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL  556 (583)
Q Consensus       478 ~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~  556 (583)
                      |||+++| .+|+|||+|||||+||+|++.++|++++++|+|||+|+|+||||+|+.+|+.+|+++||+++|+|++|..| 
T Consensus        81 ~i~~~~~~~~kdGpsa~laia~ailSa~~~~~i~~~~~~~GEl~L~G~VrpV~gi~~ki~~A~~~G~~~viiP~~n~~e-  159 (185)
T d1xhka_          81 YIQFSQSYSKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANMID-  159 (185)
T ss_dssp             EEEESSCCCTTTGGGGHHHHHHHHHHHHHTCCBCSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGG-
T ss_pred             eEecchhhhcccCccchHHHHHHHHHHHhCCCccceEEEEeccccchhhhhccCHHHHHHHHHHcCCCEEEECHHHhhh-
Confidence            9999999 78999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             hhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957          557 ATLGFEQMEFIGCKNLKEVINVVFT  581 (583)
Q Consensus       557 ~~~~~~~i~v~~v~~l~e~~~~l~~  581 (583)
                       ....++++|++|+||+||++++|.
T Consensus       160 -~~~~~~i~i~~v~~l~eai~~l~~  183 (185)
T d1xhka_         160 -VIETEGIEIIPVKTLDEIVPLVFD  183 (185)
T ss_dssp             -CCCCCSSEEEEESBHHHHHHHHBC
T ss_pred             -ccccCCcEEEEeCcHHHHHHHHhc
Confidence             445789999999999999999985
>d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]} Back     information, alignment and structure
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure