Citrus Sinensis ID: 008671

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
cccccccHHHHcccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcc
cccccccccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcEcccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHEEEHcc
mgstgepdrkrrhfssisptaatakknpffpsseekkiDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKErqqpydstLKVVNKSWEELITDLESCSmraressngqesrclsiiedvtphpshdaFLSRLMetgatesssadncpnqmeedretgiprtkNIVSNILAAVDNLWHLKGGLYAAVLKDlqdggskqkasSNLQSEVKNLRLALMDLHLKHKSLTRELqsrqdidaKDKAKLNRLKGELESAVKELEECNCKLAALRAerdvtkgaffpvlnlgnkhvagdrvrdeqrDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFrrssavtdskIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
mgstgepdrkrrhfssisptaatakknpffpsSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFaqlkerqqpydstlKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGAtesssadncpnqMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSltrelqsrqdidakdkaKLNRLKGELESAVKELEECNCKLAALRAERDVTKgaffpvlnlgnkhvagdrvrdeqRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETElnmkidlvdvfrrssavtdskiadlgieiqkqideknriemrleeasrepgrkeIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDmyrrestdsrfvNLLEYYYL
MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
****************************************AVLQFQNQKLVQKLE**KVEYSAL****************TLKVVNKSWEELITDL*******************************************************************KNIVSNILAAVDNLWHLKGGLYAAVLKDL*********************LALMDL***********************************VKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA***************************QLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQL***KSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ************************IIAEFRALV***************KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYY*
*************************************************************************************NKSWEELITDL**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLEYYYL
*************FSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS************RCLSIIEDVTPHPSHDAFLSRLMET*********************GIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDL************LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
***********************************KKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRAR*****************TPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTK*AFF*******************RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDVTKGAFFPVLNLGNKHVAGDRxxxxxxxxxxxxxxxxxxxxxASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIExxxxxxxxxxxxxxxxxxxxxPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRFVNLLEYYYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q8RXD6 878 E3 ubiquitin-protein liga yes no 0.978 0.620 0.567 1e-161
Q7XU27 884 E3 ubiquitin-protein liga yes no 0.982 0.618 0.442 1e-116
A2XW69 884 E3 ubiquitin-protein liga N/A no 0.982 0.618 0.442 1e-115
Q336R3 844 E3 ubiquitin-protein liga no no 0.886 0.585 0.294 1e-47
A2ZAC2 844 E3 ubiquitin-protein liga N/A no 0.886 0.585 0.294 1e-47
Q9C895 900 E3 ubiquitin-protein liga no no 0.964 0.596 0.270 4e-46
Q3U319 1001 E3 ubiquitin-protein liga yes no 0.219 0.121 0.317 1e-07
Q8CJB9 1002 E3 ubiquitin-protein liga yes no 0.215 0.119 0.320 5e-06
Q9VRP9 1044 E3 ubiquitin-protein liga yes no 0.152 0.081 0.315 8e-06
Q4R7K7 1001 E3 ubiquitin-protein liga N/A no 0.170 0.094 0.319 4e-05
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1 Back     alignment and function desciption
 Score =  567 bits (1461), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 312/550 (56%), Positives = 402/550 (73%), Gaps = 5/550 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           M STGEPDRKRRHFSSISP+  AA  KK PFF  S E K+DTAVLQFQN KL QKLE Q+
Sbjct: 1   MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLKLSQKLEAQQ 60

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++  
Sbjct: 61  VECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNKE 119

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           +  +P   +D F++RL+ETGATESSS++ C NQMEE+      +    + N++AA ++L 
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDLR 178

Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            LK  LY  VL+ +L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK +  L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR RD
Sbjct: 239 AKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +QRDL+DME+V KEL   AS +L +LK LH+ R K+L ++ NLQN  KSV+C+SSS+A L
Sbjct: 299 KQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQACL 358

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
           S+K+QLEKSK  VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A 
Sbjct: 359 SLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMAS 418

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L  EIQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE A
Sbjct: 419 LDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKETA 478

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
             IH LRADV SL+ VL RK KE E L   SAD  +++  L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFLD 538

Query: 538 MYRRESTDSR 547
           MY+RESTD+R
Sbjct: 539 MYKRESTDAR 548
E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3 Back     alignment and function description
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2 Back     alignment and function description
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1 Back     alignment and function description
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2 Back     alignment and function description
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2 Back     alignment and function description
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2 Back     alignment and function description
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1 Back     alignment and function description
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2 Back     alignment and function description
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
297734578 878 unnamed protein product [Vitis vinifera] 0.983 0.624 0.664 0.0
225453456 901 PREDICTED: E3 ubiquitin-protein ligase B 0.983 0.608 0.637 0.0
224067588 877 histone ubiquitination proteins group [P 0.971 0.616 0.639 0.0
224136330 884 histone ubiquitination proteins group [P 0.919 0.579 0.592 0.0
356498180 874 PREDICTED: E3 ubiquitin-protein ligase B 0.974 0.621 0.592 1e-179
356539611 873 PREDICTED: E3 ubiquitin-protein ligase B 0.973 0.620 0.594 1e-178
449431978 878 PREDICTED: E3 ubiquitin-protein ligase B 0.985 0.625 0.570 1e-166
297828217 878 histone mono-ubiquitination 1 [Arabidops 0.978 0.620 0.570 1e-160
357504631 947 E3 ubiquitin-protein ligase BRE1-like pr 0.983 0.578 0.512 1e-160
30689877 878 E3 ubiquitin-protein ligase BRE1-like 1 0.978 0.620 0.567 1e-159
>gi|297734578|emb|CBI16629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/551 (66%), Positives = 454/551 (82%), Gaps = 3/551 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
           MGSTGEPDRKRRHFSS+SPTAATAKK PF P SE+KK+DTAVLQ+QNQKL QKLE QKVE
Sbjct: 1   MGSTGEPDRKRRHFSSLSPTAATAKKMPFLPVSEDKKLDTAVLQYQNQKLKQKLEAQKVE 60

Query: 61  YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARES-SNGQESRCLSIIE 119
            SALENKF+QLKE QQ Y++TL +VNK+W EL+ +LE+CS+  ++S S G+  +  S  E
Sbjct: 61  CSALENKFSQLKETQQSYNTTLTLVNKTWRELVDNLETCSVHLKDSASAGRHVKLPSTTE 120

Query: 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWH 179
           D       DAFLSRL+ETGATES SA++  ++MEEDR T   +TKN +SNI++ +++LW 
Sbjct: 121 DGNS-CLQDAFLSRLIETGATESCSANDFSDRMEEDRPTSCGKTKNSLSNIVSTINDLWC 179

Query: 180 LKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238
           LK GLYAAVL+ L +DG   +K SS+L +EV N+RLA  DLHLKHKS+TR++QS +DIDA
Sbjct: 180 LKDGLYAAVLEALPEDGLCNKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDA 239

Query: 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDE 298
           K+KA+L RL+GELES V ELEE NCKL  L+AERD  KGAFFP+L+LG+K+VAGD+ RD+
Sbjct: 240 KNKAELKRLRGELESTVAELEESNCKLVTLKAERDAAKGAFFPILSLGSKNVAGDKARDK 299

Query: 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS 358
           Q+DL DME+  KEL+DQ+S +LLELK L++ RI +L+QL NLQNTLK+VKC+SSS A++ 
Sbjct: 300 QKDLHDMEATLKELLDQSSSRLLELKALYEERIGILKQLSNLQNTLKNVKCISSSSAYVL 359

Query: 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADL 418
           V +QLEKSK+EV  YQALFEKLQVEKDNL WRE E+NMK D VDVFRRSS VTDS++++L
Sbjct: 360 VTDQLEKSKAEVVHYQALFEKLQVEKDNLVWREKEVNMKNDFVDVFRRSSVVTDSRLSEL 419

Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
            IEIQ QI+E+N IE++LEEASREPGRKEIIAEF+AL+SSFP++M  MQ QL KYKEAA 
Sbjct: 420 RIEIQNQINERNLIEIKLEEASREPGRKEIIAEFKALLSSFPDNMGTMQNQLRKYKEAAS 479

Query: 479 DIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDM 538
           D+H LRADV SL++VLERK KE ETL   SADQVA+I KLQA++QDL +S+++LKLIL+M
Sbjct: 480 DVHSLRADVQSLSSVLERKEKELETLSTRSADQVADIRKLQALIQDLEESDIQLKLILEM 539

Query: 539 YRRESTDSRFV 549
           YR ES DSR V
Sbjct: 540 YRCESVDSRDV 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453456|ref|XP_002274055.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067588|ref|XP_002302510.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222844236|gb|EEE81783.1| histone ubiquitination proteins group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224136330|ref|XP_002326834.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222835149|gb|EEE73584.1| histone ubiquitination proteins group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498180|ref|XP_003517931.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356539611|ref|XP_003538290.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449431978|ref|XP_004133777.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus] gi|449478010|ref|XP_004155194.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297828217|ref|XP_002881991.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata] gi|297327830|gb|EFH58250.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357504631|ref|XP_003622604.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula] gi|355497619|gb|AES78822.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|30689877|ref|NP_182022.2| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] gi|75303266|sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gi|19698951|gb|AAL91211.1| unknown protein [Arabidopsis thaliana] gi|34098841|gb|AAQ56803.1| At2g44950 [Arabidopsis thaliana] gi|330255395|gb|AEC10489.1| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2054997 878 HUB1 "histone mono-ubiquitinat 0.976 0.619 0.569 5.5e-148
TAIR|locus:2035726 900 HUB2 "histone mono-ubiquitinat 0.910 0.563 0.285 8.5e-54
MGI|MGI:2142048 1001 Rnf40 "ring finger protein 40" 0.219 0.121 0.317 4.4e-15
RGD|628638 1002 Rnf40 "ring finger protein 40, 0.215 0.119 0.320 5.5e-14
UNIPROTKB|H3BP71 961 RNF40 "E3 ubiquitin-protein li 0.183 0.106 0.314 9.7e-13
UNIPROTKB|O75150 1001 RNF40 "E3 ubiquitin-protein li 0.183 0.101 0.314 1.1e-12
UNIPROTKB|Q5RAU7 1001 RNF40 "E3 ubiquitin-protein li 0.183 0.101 0.314 1.1e-12
UNIPROTKB|E2R1L5 1001 RNF40 "Uncharacterized protein 0.183 0.101 0.314 1.8e-12
UNIPROTKB|Q4R7K7 1001 RNF40 "E3 ubiquitin-protein li 0.181 0.100 0.317 2.2e-12
UNIPROTKB|E1BCI2 1001 RNF40 "Uncharacterized protein 0.193 0.107 0.313 3.6e-12
TAIR|locus:2054997 HUB1 "histone mono-ubiquitination 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 314/551 (56%), Positives = 405/551 (73%)

Query:     1 MGSTGEPDRKRRHFSSISPT--AATAKKNPFF-PSSEEKKIDTAVLQFQNQKLVQKLETQ 57
             M STGEPDRKRRHFSSISP+  AA  KK PFF PSSE+K +DTAVLQFQN KL QKLE Q
Sbjct:     1 MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDK-LDTAVLQFQNLKLSQKLEAQ 59

Query:    58 KVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSI 117
             +VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++ 
Sbjct:    60 QVECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNK 118

Query:   118 IEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNL 177
              +  +P   +D F++RL+ETGATESSS++ C NQMEE+      +    + N++AA ++L
Sbjct:   119 EDGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDL 177

Query:   178 WHLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDI 236
               LK  LY  VL+ +L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D 
Sbjct:   178 RCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDA 237

Query:   237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVR 296
             DAK +  L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR R
Sbjct:   238 DAKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRER 297

Query:   297 DEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAF 356
             D+QRDL+DME+V KEL   AS +L +LK LH+ R K+L ++ NLQN  KSV+C+SSS+A 
Sbjct:   298 DKQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQAC 357

Query:   357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIA 416
             LS+K+QLEKSK  VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A
Sbjct:   358 LSLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMA 417

Query:   417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476
              L  EIQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE 
Sbjct:   418 SLDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKET 477

Query:   477 ALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536
             A  IH LRADV SL+ VL RK KE E L   SAD  +++  L A V DL +S+ ELKL L
Sbjct:   478 AGGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFL 537

Query:   537 DMYRRESTDSR 547
             DMY+RESTD+R
Sbjct:   538 DMYKRESTDAR 548
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0010162 "seed dormancy process" evidence=RCA;IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0010390 "histone monoubiquitination" evidence=IMP
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0006513 "protein monoubiquitination" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP
GO:0016049 "cell growth" evidence=RCA;IMP
GO:0048505 "regulation of timing of cell differentiation" evidence=IMP
GO:0051301 "cell division" evidence=RCA;IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP
GO:0033523 "histone H2B ubiquitination" evidence=IMP
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0048589 "developmental growth" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
TAIR|locus:2035726 HUB2 "histone mono-ubiquitination 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628638 Rnf40 "ring finger protein 40, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H3BP71 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R7K7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCI2 RNF40 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXD6BRE1A_ARATH6, ., 3, ., 2, ., -0.56720.97840.6207yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019139001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (878 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 50/325 (15%), Positives = 133/325 (40%), Gaps = 31/325 (9%)

Query: 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262
            +L++E+++L   L +L  + + L R+L+  +   A  + +L +L+  LE   +ELEE  
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 263 CKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLE 322
            +L  L+   +                     + +E   L +  +  KE +++   +   
Sbjct: 751 EELEELQERLE--------------------ELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 323 LKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382
           L+   +   + L++    +      +  S  +    ++ ++E+ + E+ + +   ++L+ 
Sbjct: 791 LQEELEELEEELEEA-ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849

Query: 383 EKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442
           E + L     EL  +++ ++  +        ++ +   E+++++ E       L E   E
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES---ELAELKEE 906

Query: 443 PGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECE 502
                 I + R  +      +  ++ +L + +E   + +    +   L   +ER  +E E
Sbjct: 907 ------IEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET-ELEREIERLEEEIE 959

Query: 503 TLLASSADQVAEIHKLQAMVQDLTD 527
            L   +   + E  +++   ++L  
Sbjct: 960 ALGPVNLRAIEEYEEVEERYEELKS 984

Length = 1163
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
KOG0978 698 consensus E3 ubiquitin ligase involved in syntaxin 100.0
PRK02224 880 chromosome segregation protein; Provisional 98.57
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.33
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 98.3
PRK02224 880 chromosome segregation protein; Provisional 98.3
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.17
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.11
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.04
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.97
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.94
KOG0978 698 consensus E3 ubiquitin ligase involved in syntaxin 97.93
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.91
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.8
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.75
PRK03918 880 chromosome segregation protein; Provisional 97.69
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 97.62
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.59
PF00038312 Filament: Intermediate filament protein; InterPro: 97.56
PF00038312 Filament: Intermediate filament protein; InterPro: 97.54
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.51
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.5
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.46
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 97.44
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.37
PRK04863 1486 mukB cell division protein MukB; Provisional 97.21
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.18
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 97.18
KOG0933 1174 consensus Structural maintenance of chromosome pro 97.17
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.13
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 97.12
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.11
PRK03918880 chromosome segregation protein; Provisional 97.11
PF14662193 CCDC155: Coiled-coil region of CCDC155 97.05
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 97.05
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.01
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.97
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.96
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 96.76
PRK11637428 AmiB activator; Provisional 96.76
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.72
PHA02562562 46 endonuclease subunit; Provisional 96.66
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.65
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.49
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.39
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.33
KOG0963 629 consensus Transcription factor/CCAAT displacement 96.33
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.26
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 96.2
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 96.19
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.09
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.07
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.06
PRK11637428 AmiB activator; Provisional 96.0
PHA02562 562 46 endonuclease subunit; Provisional 95.93
KOG0964 1200 consensus Structural maintenance of chromosome pro 95.85
PRK04863 1486 mukB cell division protein MukB; Provisional 95.72
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.7
PRK01156 895 chromosome segregation protein; Provisional 95.65
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 95.46
PRK09039343 hypothetical protein; Validated 95.37
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 95.28
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 95.27
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.25
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.12
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.05
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.03
PRK09039 343 hypothetical protein; Validated 95.02
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.97
COG3883265 Uncharacterized protein conserved in bacteria [Fun 94.94
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.94
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 94.91
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.82
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 94.75
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.46
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.37
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 94.28
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.12
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 94.12
PF13851201 GAS: Growth-arrest specific micro-tubule binding 94.1
PRK04778569 septation ring formation regulator EzrA; Provision 93.96
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 93.94
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 93.89
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 93.5
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 93.44
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.42
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 93.28
KOG2991330 consensus Splicing regulator [RNA processing and m 93.27
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 93.27
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 93.13
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.44
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 92.38
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 92.32
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.29
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 92.06
KOG2129 552 consensus Uncharacterized conserved protein H4 [Fu 92.06
COG4372 499 Uncharacterized protein conserved in bacteria with 91.97
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 91.93
PRK01156 895 chromosome segregation protein; Provisional 91.59
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.41
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 90.95
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.9
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 90.86
PF135141111 AAA_27: AAA domain 90.85
PF15294278 Leu_zip: Leucine zipper 90.68
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 90.61
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 90.38
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 90.28
KOG4673961 consensus Transcription factor TMF, TATA element m 89.86
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.84
PF10186 302 Atg14: UV radiation resistance protein and autopha 89.67
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 89.66
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.66
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 88.9
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.72
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 88.38
KOG0964 1200 consensus Structural maintenance of chromosome pro 88.24
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.13
PF09486158 HrpB7: Bacterial type III secretion protein (HrpB7 88.06
PF15397258 DUF4618: Domain of unknown function (DUF4618) 87.97
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 87.94
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 87.93
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 87.85
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 87.65
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 87.57
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 86.4
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 86.03
PRK11281 1113 hypothetical protein; Provisional 85.99
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 85.82
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 85.81
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.67
PF13870177 DUF4201: Domain of unknown function (DUF4201) 85.31
KOG0963 629 consensus Transcription factor/CCAAT displacement 85.02
PRK10361 475 DNA recombination protein RmuC; Provisional 84.92
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 84.58
COG5185622 HEC1 Protein involved in chromosome segregation, i 84.49
PRK10884206 SH3 domain-containing protein; Provisional 84.32
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 84.04
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 83.27
PLN031881320 kinesin-12 family protein; Provisional 82.71
PF09787 511 Golgin_A5: Golgin subfamily A member 5; InterPro: 82.41
PRK04778 569 septation ring formation regulator EzrA; Provision 82.16
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 81.98
PF06548488 Kinesin-related: Kinesin-related; InterPro: IPR010 81.75
KOG4807593 consensus F-actin binding protein, regulates actin 81.47
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 81.03
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 80.83
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 80.48
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 80.38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-33  Score=308.22  Aligned_cols=362  Identities=21%  Similarity=0.230  Sum_probs=316.9

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHhhhhhhhhhhHHHHhhcccCCchhhhhccccHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008671          152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQ  231 (557)
Q Consensus       152 ~e~~L~~R~~~tk~~l~~l~~~~d~~~~~~~~l~~~l~~~~~~~~~~~~~n~~L~~E~~~Lq~~~~~L~~khk~ls~e~~  231 (557)
                      ++..++.|+.++++.++.++..+|.+....+.++..+++..   ......++.|..+|.+||.+++.||.+|+.++.++.
T Consensus         3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~---e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~   79 (698)
T KOG0978|consen    3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRVE---EALTVLFDELAEENEKLQNLADHLQEKHATLSEQIS   79 (698)
T ss_pred             chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999888710   012338889999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhc-cCCcccccCCCCCCCCCCccchhhhchHHHHHHHH
Q 008671          232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVT-KGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK  310 (557)
Q Consensus       232 ~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL~~l~~E~~~~-~g~~~~~~~~~~~~~~~~~~~~~~k~~~eL~~~le  310 (557)
                      .+.|+++..++++.++.+++|+++|++++.+++.+.+..-.... .+.++||.  |||+.+|..++|.++ +.+|...++
T Consensus        80 el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~~~~~~~t~~~t~-~~~l~~~ie  156 (698)
T KOG0978|consen   80 ELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNGSLSGTITVNSTE-LEELRDEIE  156 (698)
T ss_pred             HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--cccccCcccccchhh-hhhhccchh
Confidence            99999999999999999999999999999999998887443332 23333332  333444444468877 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008671          311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLA  388 (557)
Q Consensus       311 E~~~lA~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~d~--~~I~~S~~Yk~L~~Q~~~lkaeld~~R~l~ekLQ~er~~~~  388 (557)
                      |++.+|+.|+.+|+.++..+..++.+++.+++.++..  +++..|..|+|++     ++..+....              
T Consensus       157 e~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~~~--------------  217 (698)
T KOG0978|consen  157 ELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQRKT--------------  217 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccccc--------------
Confidence            9999999999999999999999999999999999644  8888899999998     444333332              


Q ss_pred             HHHHHhhhhhchHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHH
Q 008671          389 WRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQ  467 (557)
Q Consensus       389 rq~~E~~~k~E~~e~~~~~~~~~~~~v~~lE~~Laqvr~ere~L~~e~eqa~~~~~~-k~i~~Emr~LisSlq~~~~~Lk  467 (557)
                            |   +++++....      .++++++.++.|+.+|++++++|+++..++|. +||++||++|+|++++||++|+
T Consensus       218 ------~---~~~e~~~~~------~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~  282 (698)
T KOG0978|consen  218 ------M---ESDEAINSK------KVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLK  282 (698)
T ss_pred             ------c---hhhhhhccc------hHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                  2   444444433      38999999999999999999999999999996 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHccCCCCc
Q 008671          468 RQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRRESTDS  546 (557)
Q Consensus       468 ~ev~R~kea~~e~~~lr~e~~sl~~~l~~k~~e~~~l~~~~~~~~~~i~~l~-~~~~~l~~~~~eL~l~ldmy~~e~~d~  546 (557)
                      +..++|+++++++.++|..+.|+...++.++...+.+.++|...+.++.+++ ..++.+..+.++++.+++++.+++.+.
T Consensus       283 ~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~  362 (698)
T KOG0978|consen  283 EYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKE  362 (698)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999 889999999999999999999999999


Q ss_pred             cchhhhh
Q 008671          547 RFVNLLE  553 (557)
Q Consensus       547 rd~~e~~  553 (557)
                      |||..++
T Consensus       363 ~di~~~k  369 (698)
T KOG0978|consen  363 RDILVAK  369 (698)
T ss_pred             HhHHHHH
Confidence            9999875

>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.1 bits (199), Expect = 4e-16
 Identities = 83/623 (13%), Positives = 182/623 (29%), Gaps = 157/623 (25%)

Query: 39  DTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEEL--ITDL 96
           +T   Q+Q + ++             E+ F    + +   D    +++K  EE+  I   
Sbjct: 10  ETGEHQYQYKDILS----------VFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMS 57

Query: 97  ESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSR--------LMETGATESSSAD-- 146
           +               R    +           F+          LM    TE       
Sbjct: 58  KDAVSGTL--------RLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 147 -----NCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLK----------GG-----LYA 186
                   +++  D +       + +   L     L  L+           G     +  
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 187 AVLKD--LQDG----------GSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQ 234
            V     +Q             +     + L+         L  L  +   +     SR 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQKLLYQ---IDPNWTSRS 217

Query: 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLG-------- 286
           D  +  K +++ ++ EL   +K     NC L  L    +V     +   NL         
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLL---NVQNAKAWNAFNLSCKILLTTR 273

Query: 287 NKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLL-------------ELKGLHDGRIKV 333
            K V  D +         ++     L       LL             E+   +  R+ +
Sbjct: 274 FKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 334 ----LQQLYNLQNTLKSVKCLSSSKAF-LSVKNQLEKSKSEVFKYQALFEK-LQVEKDNL 387
               ++      +  K V C   +     S+         ++F   ++F     +    L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 388 A--WRETELNMKIDLVDVFRRSSAVT-DSK-----IADLGIEIQKQIDEKNRIEMRLEEA 439
           +  W +   +  + +V+   + S V    K     I  + +E++ +++ +  +       
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH------ 446

Query: 440 SREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY-----------KEAALDIHILRADVL 488
                 + I+  +    +   +D+      L +Y            E    + + R   L
Sbjct: 447 ------RSIVDHYNIPKTFDSDDLIPPY--LDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 489 SLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE----LKLILDMYRREST 544
                LE+K++   T   +S   +  + +L+     + D++ +    +  ILD   +   
Sbjct: 499 DF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 545 D---SRFVNLL--------EYYY 556
           +   S++ +LL        E  +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIF 580
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.26
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.87
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.73
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.33
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.4
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.37
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.96
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.88
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 92.73
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 90.58
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 90.44
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 88.78
3i00_A120 HIP-I, huntingtin-interacting protein 1; transcrip 87.51
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.51
2v4h_A110 NF-kappa-B essential modulator; transcription, met 87.45
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 83.91
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.92
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 82.56
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.11
3etw_A119 Adhesin A; antiparallel helix-loop-helix, leucine 80.75
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.26  E-value=0.0037  Score=60.12  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008671          212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL  265 (557)
Q Consensus       212 Lq~~~~~L~~khk~ls~e~~~~~d~~~~~e~e~~eL~~~LE~~~~elek~rrKL  265 (557)
                      +...++.++.....+..++..+...+......+..+...+..+...+..++..+
T Consensus        11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (284)
T 1c1g_A           11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL   64 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444333333344444444444444444444444333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00