Citrus Sinensis ID: 008755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
Protein Sequence
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHcccccccccHHHHHHHHHcccEEHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcHHHHHHHHHHHHHHHcHHHHHHHEHHHHccHHHcccccccccccccEEEEEcccccccccccccHHHHHHccccccccHHHHHHHHHcccEEEEEccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccEEEEccccccccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccHcccccccccEEcccHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccEEEEEEcHHHHHHHHHHcccEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHccEEEHHcccccEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHcHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHc
Coil and Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEklqllpppqplppkaphpltglsfavsdlfdiegyvtgfghpewarthsaasrTSTVVSTLVEGGATCIGKTVVDEFAYsingtnkhydtptnpaapsqmpggsssgAAVAVAADLVDfslgidtvggvrvpsafcgilgfrpsygavshmgiipistsldtvgwfardpkilRHVGHVLLqlpfaaqrsprqiiIADDCFellkipadRVVQVVIKSTEKlfgrqvlkhenlgeyfdskvpslkgfhktnGELKNVMRLIQRYEFknnhnewiesvkpaldpdisAEIGEMLEISETVIENCKSIRNEMRSAISSLlkddgilvtpttaypppklggkemlsEDYQNRAFSLLSIASVSgccqvtvplgyydkcptsvSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLngnnatyySNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG
Flexible Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLpfaaqrspRQIIIADDCFELLKIPADRVVQVVIKSTeklfgrqvlkhenlgeyfdskvpslkgfhktngELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSllkddgilvtPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEkgnqaykdKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTkainldkknvkaylrrgtaremlgyykeaieg
Low Complexity Region (SEG)
MASQSANlwvllglglagillMTKKLKKNIKQDFGAFIEklqllpppqplppkaphplTGLSFAVSDLFDIEGYVTGFGHPEWarthsaasrtstvvstLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPggsssgaavavaaDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG
Disordered region (IsUnstruct)
******NLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLL*************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTN***********************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY************EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL*********************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK*****
Disordered Region (DISOPRED)
******N**VLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQL**************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE*******************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA***
Disordered Region (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWA*************STLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT****************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG
Disordered Region (DISPRO)
****SANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS**A****ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS************AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE*
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	554	2.2.26 [Sep-21-2011]
Q9MUK5	593	Translocon at the outer m	N/A	no	0.998	0.932	0.701	0.0
Q9LVH5	589	Outer envelope protein 64	yes	no	0.998	0.938	0.721	0.0
F4KCL7	603	Outer envelope protein 64	no	no	0.981	0.902	0.536	1e-171
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.732	0.955	0.517	1e-119
Q8THJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.673	0.783	0.262	1e-23
Q5X4H5	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.648	0.743	0.266	1e-23
Q8PXJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.673	0.783	0.252	2e-23
A5ICP2	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.648	0.743	0.268	2e-23
Q5WVW0	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.648	0.743	0.268	3e-23
P47345	477	Glutamyl-tRNA(Gln) amidot	yes	no	0.315	0.366	0.349	3e-23

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/563 (70%), Positives = 467/563 (82%), Gaps = 10/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS S+ +WV+LGLGLAGI ++T+KL + +K+DFGAF+ KL+LLPPP P PPKAPHPL+ 
Sbjct: 4   MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SD+FDIEG+V+ FGHPEWARTH  AS T++ VS LVE GATCIG TVVDE AY I
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TPTNPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAY RRGTAREMLGYYKEAI+
Sbjct: 544 NVKAYFRRGTAREMLGYYKEAID 566

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.
Pisum sativum (taxid: 3888)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/563 (72%), Positives = 469/563 (83%), Gaps = 10/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MASQ+ANLWVLLGLGLAGIL++TKKLKK +++DFGAFI+KL LLPPPQP PPKAPHPLTG
Sbjct: 1   MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDI GYVTGFGHP+W RTH AAS TS VVSTLVEGGATC+GKTVVDEFA+SI
Sbjct: 61  LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHYD+PTNPAAP+++PGG+ SGAAVAVA + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct: 121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct: 181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNG--------- 291
           +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T           
Sbjct: 241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query: 292 -ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
             L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct: 301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct: 361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct: 421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct: 481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAYLRRGTAREMLG  K AIE
Sbjct: 541 NVKAYLRRGTAREMLGDCKGAIE 563

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  601 bits (1549), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/559 (53%), Positives = 394/559 (70%), Gaps = 15/559 (2%)

Query: 8   LWVLLGLGLAGILLMTKKLKKNIK----QDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSF 63
           +WV++G+ +AGI+++ +  K+ I+    +DFGAF+++ +LLP P P PP A   L+GL+F
Sbjct: 17  VWVVIGVTVAGIVILAETRKRRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTF 76

Query: 64  AVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT 123
           ++SD FD++ Y+TGFG P+W +TH AA +T+ VV+TL++ GATC+GKT++DE  + I G 
Sbjct: 77  SISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGE 136

Query: 124 NKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPS 183
           NKHY TP NP  P  +PGG SSG+AV+V A+LVDFSLGIDT GGVRVP+AFCGILGFRPS
Sbjct: 137 NKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPS 196

Query: 184 YGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELL 243
            G VS +G++P S SL+TVGWFA DP +L  VGH LL L     R  R +I ADD FEL 
Sbjct: 197 QGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELS 256

Query: 244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN-------- 295
            IP  + VQVV K+ E L G +  KH N+G+Y  S VPSL  F + +G+ +N        
Sbjct: 257 DIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRAL 316

Query: 296 --VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAI 353
             VM  IQR+EFK NH EW ++ K  L P  S ++   L+     I++   ++NEMR+ I
Sbjct: 317 SSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATI 376

Query: 354 SSLLKDDGILVTPTTAYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
            SLLK+DGILV PT A PPP+L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG + 
Sbjct: 377 QSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHG 436

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGN 472
             P SVS +  +GGD+FLLDT  ++YASLQ+QA +A+     ++T    +++E+ KEKGN
Sbjct: 437 DRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGN 496

Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
            AYK KQW KA++FYTEAIKLNG NATYY NRAAA+LE   F QAE DCTKA+ +DKKNV
Sbjct: 497 AAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNV 556

Query: 533 KAYLRRGTAREMLGYYKEA 551
           KAYLRRGTARE L  YKEA
Sbjct: 557 KAYLRRGTARESLVRYKEA 575

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/423 (51%), Positives = 286/423 (67%), Gaps = 17/423 (4%)

Query: 31  KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA 90
             DFGAFIEK+ +          +P  L GL+FA+ D+FD+EG VTGFG+P+W RTHSAA
Sbjct: 4   NNDFGAFIEKVTIS---PTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAA 60

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           + T+ VVS+L+E GAT +G T++DE AYSING N HY TP NP A  ++PGGSSSG+AVA
Sbjct: 61  TSTAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVA 120

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
           VAA LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD  
Sbjct: 121 VAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTA 180

Query: 211 ILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF-GRQVLKH 269
            L+ VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK F G  V+K 
Sbjct: 181 TLKRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKK 240

Query: 270 ENLGEYFDSKVPSLKGFHKTNG-------------ELKNVMRLIQRYEFKNNHNEWIESV 316
            NLGEY    VPSLK F  ++               L + MRL+QR+EFK NH  WI SV
Sbjct: 241 VNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSV 300

Query: 317 KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           KP   P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L 
Sbjct: 301 KPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQ 360

Query: 377 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQN 436
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V +
Sbjct: 361 ANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDS 420

Query: 437 MYA 439
           + A
Sbjct: 421 LAA 423

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L++ G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLDAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    +Y    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG  A    D  IL  V  G+  
Sbjct: 167 GGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYF-D 277
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG    +
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPGVEKAVWNAIHKFESLGATRQE 286

Query: 278 SKVP----SLKGFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P    +L  ++    +    N+ R    RY F+ N   W   V          E+  
Sbjct: 287 VSMPNINYALASYYIIAMSEASSNLARFDGTRYGFRANGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIENCKSIRNEMRS-AISSLLKDD--------GILVTPTTAYPPPKLGGKEML 381
            + +    +      +  +++  + +L+K D         +L+ PT   P  ++G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSTVDLLMAPTMPNPAFRIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   V+VP G+ D  P  +  +    G  F   TV     
Sbjct: 404 IEDPLTLYLSDVNTCPINLAGVPSVSVPCGFTDGLPVGLQIM----GKPFDEPTVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5X4H5|GATA_LEGPA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
            D    +K P D++                +Q  I +  KLF       ENLG       
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHNAVKLF-------ENLGAEIIEID 294

Query: 281 PSLKGF------------HKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
             L+ F              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPFWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITTLNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 177/431 (41%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L+  G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLSAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    H+    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P++FCG++G +P+YGAVS  G++  + SL+ VG  A    D  +L  V  G+  
Sbjct: 167 GGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAVLMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG  ++ 
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPDVEKAVWDAIHKCESLGATWEE 286

Query: 279 -KVPSLK----GFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P +K     ++    +    N+ R    RY F+     W   V          E+  
Sbjct: 287 VSMPHIKYALASYYIIAMSEASSNLARFDGTRYGFRAGGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML 381
            + +    +              +R  ++      L    +L+ PT   P  K+G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSKVDLLMAPTMPNPAFKIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   ++VP G+ D  P  +  +    G  F  +TV     
Sbjct: 404 IEDPLTLYLSDINTCPINLAGVPSISVPCGFTDGLPIGLQIM----GKPFDEETVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A5ICP2|GATA_LEGPC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSTGFFNAYYLHAQKVRRLIRDELITTLNSVDVIIGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Corby) (taxid: 400673)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5WVW0|GATA_LEGPL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 184/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA  LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSADRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSTEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + ++L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITILNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            + +  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KIDDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSENRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|P47345|GATA_MYCGE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=gatA PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 8/183 (4%)

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           ++TV   L   GA  +GK  +DEF     G+   +    +P   S + GGSSSG+A AVA
Sbjct: 93  SATVFELLEMNGALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVA 152

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
            D+V FS+  DT   +R P++ C ++GF+P+YG +S  G+ P + S+D VG FA+    +
Sbjct: 153 KDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDI 212

Query: 213 RHVGHVLL---QLPFAAQRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLFGRQVLK 268
             V  V++   +  F++Q+SP +    +  F  L IP  R ++   +K  EKLF + + K
Sbjct: 213 AIVSDVVIKHDKTDFSSQKSPDE----NQFFNELAIPFTRSIRFGYLKPLEKLFNKHLQK 268

Query: 269 HEN 271
             N
Sbjct: 269 KWN 271

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
225456155	590	PREDICTED: translocon at the outer membr	0.998	0.937	0.785	0.0
255579275	589	amidase, putative [Ricinus communis] gi|	0.996	0.937	0.763	0.0
224135565	592	amidase family protein [Populus trichoca	0.996	0.932	0.753	0.0
224118646	593	amidase family protein [Populus trichoca	0.996	0.930	0.751	0.0
357521651	594	Glutamyl-tRNA(Gln) amidotransferase subu	0.996	0.929	0.722	0.0
449497473	591	PREDICTED: translocon at the outer membr	0.998	0.935	0.742	0.0
356512970	587	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.960	0.906	0.706	0.0
449439139	585	PREDICTED: LOW QUALITY PROTEIN: transloc	0.987	0.935	0.731	0.0
356524688	591	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.960	0.900	0.726	0.0
75336680	593	RecName: Full=Translocon at the outer me	0.998	0.932	0.701	0.0

>gi|225456155|ref|XP_002282402.1| PREDICTED: translocon at the outer membrane of chloroplasts 64 [Vitis vinifera] gi|297734325|emb|CBI15572.3| unnamed protein product [Vitis vinifera]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/563 (78%), Positives = 496/563 (88%), Gaps = 10/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAG+LLMT+KLKK I++DFGAF+++LQLLPPPQP PPKAPHPLT 
Sbjct: 1   MASSSANLWVLLGLGLAGVLLMTRKLKKTIREDFGAFVQRLQLLPPPQPAPPKAPHPLTN 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           LSFAVSD+FDIEGYVTGFG+P+WARTH  ASRTS VVS LVEGGATC GKTVVDE AYSI
Sbjct: 61  LSFAVSDVFDIEGYVTGFGNPDWARTHDTASRTSPVVSALVEGGATCTGKTVVDEMAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG NKHY TPTNPAAPS++PGGSSSGAAVAVAA+ VDFSLG+DTVGGVRVP+AFCG++GF
Sbjct: 121 NGENKHYGTPTNPAAPSRIPGGSSSGAAVAVAANFVDFSLGLDTVGGVRVPAAFCGVIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSHMGII +S+SLDTVGWFA+DP ILR VGHVLLQL +A QRSPRQII ADDCF
Sbjct: 181 RPSHGAVSHMGIIHVSSSLDTVGWFAKDPSILRRVGHVLLQLTYAVQRSPRQIIFADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELKN--- 295
           + L+IP DRV QVV+KSTEKLFGRQVLK ENL  Y DSKVPSLK FH  KTNGE +N   
Sbjct: 241 QSLRIPVDRVYQVVLKSTEKLFGRQVLKRENLENYLDSKVPSLKAFHSQKTNGETRNSLI 300

Query: 296 -----VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                +M  +QR+EFK+NH EWI SVKP LD  IS+++ ++LE+++T IENC+S R E+R
Sbjct: 301 RSLVKIMHCLQRHEFKHNHEEWINSVKPILDASISSQLHDVLEVADTEIENCQSSRMEIR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SA++SLLKDDGILV PT A PPPKLGGKE LSE+YQNR   LLSIAS+SGCCQVTVPLG 
Sbjct: 361 SALNSLLKDDGILVIPTVADPPPKLGGKESLSEEYQNRTLGLLSIASMSGCCQVTVPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVSF+ARHGGDRFLLDTVQ MYASLQEQADIA KSKLS+N  +++ SAEIAKEK
Sbjct: 421 YDKYPVSVSFMARHGGDRFLLDTVQTMYASLQEQADIAAKSKLSSNAVDRETSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+KDKQW KA+ FYTEAIKL+GNNATYYSNRAAAYLE GSFLQAEADCT+AINLDKK
Sbjct: 481 GNQAFKDKQWQKAVGFYTEAIKLSGNNATYYSNRAAAYLEMGSFLQAEADCTEAINLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAYLRRGTAREMLGYYK+AIE
Sbjct: 541 NVKAYLRRGTAREMLGYYKDAIE 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579275|ref|XP_002530483.1| amidase, putative [Ricinus communis] gi|223529980|gb|EEF31906.1| amidase, putative [Ricinus communis]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/563 (76%), Positives = 491/563 (87%), Gaps = 11/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           M S  ANLWVLLGLG+AGILL+TKKLKK I++DFGAF++KLQLLPPP P PPKAPHPLTG
Sbjct: 1   MGSNPANLWVLLGLGIAGILLVTKKLKKVIREDFGAFVQKLQLLPPPPPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDIEGYVTGFGHP+WARTH AAS+TS VVS LVEGGATCIGKTVVDE AYSI
Sbjct: 61  LTFAVSDVFDIEGYVTGFGHPDWARTHEAASQTSLVVSALVEGGATCIGKTVVDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG N+HY TPTNPA P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 NGENEHYGTPTNPAVPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+ + GI+PIS SLDTVGWFARDP ++R VGH+LLQLPF  QR+P+QIIIADDCF
Sbjct: 181 RPSYGAIPNTGILPISASLDTVGWFARDPNVIRRVGHLLLQLPFGVQRNPKQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVVIKSTEK+FGRQVL+HE L +   S+V SLK  H  KTNGEL+    
Sbjct: 241 QLLKIPVDRIAQVVIKSTEKIFGRQVLRHEILEDVLFSRVRSLKLLHDQKTNGELRTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+MRL+ RYEF++NH EWI   KP +D +ISA+I E+++I +T IE  KSIR EMR
Sbjct: 301 RLLANIMRLLHRYEFRHNHEEWINIEKPNVDHNISAQIHEIVDIPDTEIEIFKSIRQEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           +AI+SLLKDDGILV PTTA+ PPKLGGK+MLSEDYQ   FSLLSIAS+SGCCQVT+PLG 
Sbjct: 361 AAINSLLKDDGILVIPTTAHLPPKLGGKDMLSEDYQILLFSLLSIASLSGCCQVTIPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVSFIARHGGDRFL+DTVQNMY+SLQEQ D+  K K  T+  NQ++SAE+AKEK
Sbjct: 421 YEKCPVSVSFIARHGGDRFLMDTVQNMYSSLQEQVDMLAKPKSHTSD-NQERSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAIS+YTEAIKLNG NATYYSNRAAAYLE GSFLQAEADCTKAINLDKK
Sbjct: 480 GNQAYKEKQWQKAISYYTEAIKLNGKNATYYSNRAAAYLELGSFLQAEADCTKAINLDKK 539

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAYLRRGTAREM+GYYKEAIE
Sbjct: 540 NVKAYLRRGTAREMIGYYKEAIE 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135565|ref|XP_002322105.1| amidase family protein [Populus trichocarpa] gi|222869101|gb|EEF06232.1| amidase family protein [Populus trichocarpa]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/563 (75%), Positives = 486/563 (86%), Gaps = 11/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS  ANLWVLLGLGLAGI L TKK KK +++DFGAFI KLQLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNPANLWVLLGLGLAGIFLFTKKFKKVLREDFGAFIHKLQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSDLFDIEGYVTGFGHP+WA+TH AASRTS VVSTLVEGGATC+GKTV+DE AYSI
Sbjct: 61  LTFAVSDLFDIEGYVTGFGHPDWAKTHEAASRTSVVVSTLVEGGATCVGKTVIDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
            G NKHY TPTNP  P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 TGENKHYGTPTNPVEPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+S +G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+ADDCF
Sbjct: 181 RPSYGAISKIGVLPVSVSLDTVGWFAKDPNILRRVGHVLLQSAFGGQRSPRQIIMADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVV+KSTEK FGRQ+LKHE L  Y +SKVPSLK FH  KTNGE+K    
Sbjct: 241 QLLKIPVDRIAQVVVKSTEKHFGRQLLKHEILDVYLNSKVPSLKEFHNKKTNGEVKTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+L+ RYEF++NH EWI +VKP L+P++SA++ E++E+S+  IE CKSIR EMR
Sbjct: 301 RLLANVMQLLHRYEFRSNHEEWINTVKPILEPNLSAQMNEIMELSDAEIELCKSIREEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SAI+SLLKDDGILV PTTAY PPKLGGKE+LSE+YQ+ +F LLSIAS+SGCCQVTVPLGY
Sbjct: 361 SAINSLLKDDGILVVPTTAYLPPKLGGKEILSEEYQSSSFGLLSIASLSGCCQVTVPLGY 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVS IARHG DRFLLDTVQ MY +LQEQA+    SK S+N  +++ SAE+AKEK
Sbjct: 421 YNKCPVSVSLIARHGSDRFLLDTVQTMYKTLQEQAETYVNSK-SSNKDSRENSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K++QW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF  AEADC+ AINLDKK
Sbjct: 480 GNQAFKEQQWQKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFQHAEADCSNAINLDKK 539

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAYLRRGTAREMLGYYK+AIE
Sbjct: 540 NVKAYLRRGTAREMLGYYKDAIE 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118646|ref|XP_002317872.1| amidase family protein [Populus trichocarpa] gi|222858545|gb|EEE96092.1| amidase family protein [Populus trichocarpa]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/564 (75%), Positives = 484/564 (85%), Gaps = 12/564 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNI-KQDFGAFIEKLQLLPPPQPLPPKAPHPLT 59
           MAS SANLWVLLGLGLAGILLMTKK KK+I +QDFGAFIEKL L+PPPQP PPKAPHPLT
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKFKKSIIRQDFGAFIEKLLLVPPPQPPPPKAPHPLT 60

Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS 119
            L+FAVSDLF+IEGYV+GFGHPEWA+TH AASRTS VVSTLV+GGATC+GKTV+DE AYS
Sbjct: 61  ALTFAVSDLFEIEGYVSGFGHPEWAKTHQAASRTSLVVSTLVDGGATCVGKTVIDELAYS 120

Query: 120 INGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILG 179
           I+G NKHY TP NP  P+++PGGS SGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCG++G
Sbjct: 121 IHGENKHYGTPINPVVPARVPGGSCSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGVIG 180

Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDC 239
           FRPSYGA+S  G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+A+DC
Sbjct: 181 FRPSYGAISKTGVLPVSASLDTVGWFAKDPNILRRVGHVLLQPAFGGQRSPRQIIMAEDC 240

Query: 240 FELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK--- 294
           F+LLKIP DRV QVV+ STEK FGRQVLKHE L  Y +SKVPSLK FH  K NG++K   
Sbjct: 241 FQLLKIPVDRVAQVVVNSTEKHFGRQVLKHEILDVYLNSKVPSLKEFHNKKKNGDVKTSS 300

Query: 295 -----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 349
                +VM+L+ RYEF++NH EWI + KP L+PD SA++ E+++ISE  IE CKSIR EM
Sbjct: 301 IRLLAHVMQLLHRYEFRSNHEEWINTEKPILEPDFSAQMNEIMKISEAEIELCKSIREEM 360

Query: 350 RSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 409
           R AI+SLLKDDGILV PT AY PPKL GKE+LSE+Y++ +FSLLSIAS+SGCCQVTVPLG
Sbjct: 361 RLAINSLLKDDGILVVPTMAYLPPKLDGKEILSEEYKSSSFSLLSIASLSGCCQVTVPLG 420

Query: 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKE 469
           YYDKCP SVS IARHG DRFLLDT+Q MYASLQEQA+   KSK S NT + + SAE+AKE
Sbjct: 421 YYDKCPVSVSLIARHGNDRFLLDTLQTMYASLQEQAETHVKSK-SRNTDSGENSAEMAKE 479

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KGNQA+K+KQW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF QAEADC+KAINLDK
Sbjct: 480 KGNQAFKEKQWKKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFHQAEADCSKAINLDK 539

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           KNVKAYLRRGTAREMLGYYK+AIE
Sbjct: 540 KNVKAYLRRGTAREMLGYYKDAIE 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521651|ref|XP_003631114.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355525136|gb|AET05590.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/563 (72%), Positives = 473/563 (84%), Gaps = 11/563 (1%)

Query: 2   ASQSAN-LWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           +SQS+N LWVLLGLGLAGI ++T+KLK+ +K+D GAFI+KLQLLPPP P PPKAPHPLT 
Sbjct: 6   SSQSSNNLWVLLGLGLAGIYVLTRKLKQTVKEDLGAFIQKLQLLPPPPPAPPKAPHPLTS 65

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SDLFDIEG+V+ FGHPEWARTH  AS TS  VSTLV+ GATCI  TV+D  +Y I
Sbjct: 66  LTFAISDLFDIEGHVSTFGHPEWARTHEPASSTSPAVSTLVQSGATCIATTVLDNLSYGI 125

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TP+NPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 126 SGENKHFGTPSNPAIPARVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 185

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH GIIP+STSLDTVGWFA+DP ILR VGH+LLQ PF  QRSPRQIIIADDCF
Sbjct: 186 RPSHGAVSHGGIIPVSTSLDTVGWFAKDPDILRRVGHILLQAPFVMQRSPRQIIIADDCF 245

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH NL  Y  SKVPSLK     K NGELK    
Sbjct: 246 QHLNVPLDRSSQVVIKATEKLFGKQVLKHINLEGYIRSKVPSLKACSGQKANGELKSSSL 305

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ +QR+EF + H+EW+  VKP L P +SA++ E  ++SE  +EN KS+R+EMR
Sbjct: 306 ILLANIMQFLQRHEFGHMHDEWMSIVKPDLHPAVSAQLHEKFDVSEVEMENSKSVRSEMR 365

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+GILV PT A PPPKLGGKE+LS+DYQ+RAFSLLSIAS+SGCCQVTVPLG+
Sbjct: 366 VAVNSLLKDEGILVIPTVADPPPKLGGKEILSQDYQSRAFSLLSIASISGCCQVTVPLGF 425

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVS IAR+GGDRFLLDT++ MY SLQEQADIA  SK S N  +++QSAEIAKEK
Sbjct: 426 YDKYPVSVSLIARYGGDRFLLDTLKTMYTSLQEQADIAATSKASRNVVSKEQSAEIAKEK 485

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAEADCTKAI+LDKK
Sbjct: 486 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEADCTKAISLDKK 545

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           +VKAY RRGTAREMLGYYKEAI+
Sbjct: 546 SVKAYFRRGTAREMLGYYKEAID 568

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497473|ref|XP_004160411.1| PREDICTED: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/563 (74%), Positives = 480/563 (85%), Gaps = 10/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AASRTS VVS LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAASRTSPVVSALVEGGATCIGKTVTNELSMGI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NK+Y+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 121 SGENKYYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 181 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 241 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 301 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT  PPPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 361 MAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 421 HDSCPVSVSFLARHGADRFLLDIVQTMYKSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 481 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVK+YLRRGTAREMLG+YKEAIE
Sbjct: 541 NVKSYLRRGTAREMLGFYKEAIE 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512970|ref|XP_003525187.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/542 (70%), Positives = 456/542 (84%), Gaps = 10/542 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KL K++++DFGAFI KLQLLPPPQP PPKAPHPLT L+FA+SDLF I G+V  FGHP
Sbjct: 19  ITRKLNKSVREDFGAFIHKLQLLPPPQPSPPKAPHPLTSLTFALSDLFHIHGHVPSFGHP 78

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           +WARTH  +S T+  VS LVEGGATC+  TV+D+ A  I G NKH+ TPTNPA P+++PG
Sbjct: 79  DWARTHEPSSSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHFGTPTNPAVPARVPG 138

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAA+ VDF+LGIDT GGVRVP+ FCGILGFRPS+GAVSHMGIIPISTSLDT
Sbjct: 139 GSSSGAAVAVAANFVDFALGIDTTGGVRVPAGFCGILGFRPSHGAVSHMGIIPISTSLDT 198

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PF  QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 199 VGWFAKDPNILRRVGHILLQAPFVMQRSPRQIVIADDCFQHINVPLDRSSQVVVKATEKL 258

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    K NGE+K        ++M+ +QR+EF+  H++
Sbjct: 259 FGRQVLKHINLGDYLSSRVPSLKGCSGQKPNGEVKASSLKLLAHIMQFLQRHEFRLKHDD 318

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EMR+A++SLLKD+GILV PT A P
Sbjct: 319 WMNTVKPDLHPGVSAQLHEKFEVSDAEIENSKSVRSEMRAAVNSLLKDEGILVIPTVADP 378

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 379 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 438

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 439 DTLQTVYTTLQEQADIASKSKSSGNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 498

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           KL G+NATYYSNRA AYLE  S+LQA  DCTKAI+LDKKNVKAY RRGTAR+MLGYYKEA
Sbjct: 499 KLCGDNATYYSNRAQAYLELESYLQAVEDCTKAISLDKKNVKAYFRRGTARQMLGYYKEA 558

Query: 552 IE 553
           I+
Sbjct: 559 ID 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439139|ref|XP_004137345.1| PREDICTED: LOW QUALITY PROTEIN: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/563 (73%), Positives = 473/563 (84%), Gaps = 16/563 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AA       S LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAAX------SALVEGGATCIGKTVTNELSMGI 114

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHY+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 115 SGENKHYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 174

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 175 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 234

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 235 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 294

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 295 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 354

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT   PPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 355 MAINSLLKDDGVLVIPTTVDSPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 414

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 415 HDSCPVSVSFLARHGADRFLLDIVQTMYRSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 474

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 475 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 534

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVK+YLRRGTAREMLG+YKEAIE
Sbjct: 535 NVKSYLRRGTAREMLGFYKEAIE 557

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524688|ref|XP_003530960.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/542 (72%), Positives = 462/542 (85%), Gaps = 10/542 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KLKK++++D GAFIEKLQLLPPPQP PPKAPHPLT L+FA+SDLFDIEG+V+ FGHP
Sbjct: 23  ITRKLKKSVRKDLGAFIEKLQLLPPPQPAPPKAPHPLTALTFALSDLFDIEGHVSTFGHP 82

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           EWARTH  AS T+  VS LVEGGATC+  TV+D+ A  I G NKHY TPTNPA P+++PG
Sbjct: 83  EWARTHEPASSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHYGTPTNPAVPARVPG 142

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAAD VDF+LGIDTVGGVRVP+ FCGILGFRPS+GAVSH+GIIPISTSLDT
Sbjct: 143 GSSSGAAVAVAADFVDFALGIDTVGGVRVPAGFCGILGFRPSHGAVSHLGIIPISTSLDT 202

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PFA QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 203 VGWFAKDPNILRRVGHILLQAPFAMQRSPRQIVIADDCFQHINVPLDRSSQVVVKTTEKL 262

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    KTNGE+K        N+M+ +QR+EF+  H+E
Sbjct: 263 FGRQVLKHINLGDYLSSRVPSLKGCSGQKTNGEVKASALKLLANIMQSLQRHEFRLKHDE 322

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EM +A++SLLKD+GILV PT A P
Sbjct: 323 WMNTVKPELHPGVSAQLHEKFEVSDAEIENSKSVRSEMCAAVNSLLKDEGILVIPTVADP 382

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 383 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 442

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 443 DTLQTVYTTLQEQADIASKSKSSGNAVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 502

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           KL G+NATYYSNRA AYL  GS+LQA  DCTKAI+LDKKNVKAY RRGTAREMLGYYKEA
Sbjct: 503 KLCGDNATYYSNRAQAYLGLGSYLQAVEDCTKAISLDKKNVKAYFRRGTAREMLGYYKEA 562

Query: 552 IE 553
           I+
Sbjct: 563 ID 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75336680|sp|Q9MUK5.1|TOC64_PEA RecName: Full=Translocon at the outer membrane of chloroplasts 64 gi|7453538|gb|AAF62870.1|AF179282_1 Toc64 [Pisum sativum]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/563 (70%), Positives = 467/563 (82%), Gaps = 10/563 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS S+ +WV+LGLGLAGI ++T+KL + +K+DFGAF+ KL+LLPPP P PPKAPHPL+ 
Sbjct: 4   MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SD+FDIEG+V+ FGHPEWARTH  AS T++ VS LVE GATCIG TVVDE AY I
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TPTNPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           NVKAY RRGTAREMLGYYKEAI+
Sbjct: 544 NVKAYFRRGTAREMLGYYKEAID 566

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.998	0.938	0.630	8.2e-186
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.998	0.932	0.616	2.9e-183
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.953	0.875	0.493	1.2e-134
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.729	0.950	0.465	6.8e-95
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.592	0.961	0.311	2.4e-37
TIGR_CMR|DET_1335	486	DET_1335 "glutamyl-tRNA(Gln) a	0.196	0.224	0.376	7.8e-17
TIGR_CMR|CHY_1102	485	CHY_1102 "glutamyl-tRNA(Gln) a	0.333	0.381	0.310	2.1e-16
UNIPROTKB|Q936X3	457	atzE "Biuret hydrolase" [Pseud	0.258	0.312	0.326	3.2e-16
SGD|S000004907	464	HER2 "Subunit of the trimeric	0.216	0.258	0.382	3.4e-16
CGD|CAL0003013	450	orf19.3956 [Candida albicans (	0.216	0.266	0.341	5.3e-15

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1802 (639.4 bits), Expect = 8.2e-186, P = 8.2e-186
 Identities = 355/563 (63%), Positives = 417/563 (74%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MASQ+AN              +TKKLKK +++DFGAFI+                   TG
Sbjct:     1 MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FAVSD+FDI GYVTGFGHP+W                LVEGGATC+GKTVVDEFA+SI
Sbjct:    61 LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKHYD+PTNPAAP+++P             + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct:   121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct:   181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKT----NGE---- 292
             +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T    N +    
Sbjct:   241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query:   293 --LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct:   301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct:   361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct:   421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct:   481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Query:   531 NVKAYLRRGTAREMLGYYKEAIE 553
             NVKAYLRRGTAREMLG  K AIE
Sbjct:   541 NVKAYLRRGTAREMLGDCKGAIE 563

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 347/563 (61%), Positives = 413/563 (73%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MAS S+               +T+KL + +K+DFGAF+                    + 
Sbjct:     4 MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FA+SD+FDIEG+V+ FGHPEW                LVE GATCIG TVVDE AY I
Sbjct:    64 LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKH+ TPTNPA P+++P             + VDFSLG+DT GGVRVP+ FCGILGF
Sbjct:   124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct:   184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
             + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct:   244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query:   295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                 NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct:   304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct:   364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct:   424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct:   484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query:   531 NVKAYLRRGTAREMLGYYKEAIE 553
             NVKAY RRGTAREMLGYYKEAI+
Sbjct:   544 NVKAYFRRGTAREMLGYYKEAID 566

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 266/539 (49%), Positives = 346/539 (64%)

Query:    24 KKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEW 83
             ++++   ++DFGAF++                   +GL+F++SD FD++ Y+TGFG P+W
Sbjct:    37 RRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQW 96

Query:    84 XXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXX 143
                             L++ GATC+GKT++DE  + I G NKHY TP NP  P  +P   
Sbjct:    97 KKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGC 156

Query:   144 XXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 203
                       +LVDFSLGIDT GGVRVP+AFCGILGFRPS G VS +G++P S SL+TVG
Sbjct:   157 SSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVG 216

Query:   204 WFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
             WFA DP +L  VGH LL L     R  R +I ADD FEL  IP  + VQVV K+ E L G
Sbjct:   217 WFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSG 276

Query:   264 RQVLKHENLGEYFDSKVPSLKGFHKTNGELKN----------VMRLIQRYEFKNNHNEWI 313
              +  KH N+G+Y  S VPSL  F + +G+ +N          VM  IQR+EFK NH EW 
Sbjct:   277 YKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWW 336

Query:   314 ESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP 373
             ++ K  L P  S ++   L+     I++   ++NEMR+ I SLLK+DGILV PT A PPP
Sbjct:   337 QTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPP 396

Query:   374 KLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             +L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG +   P SVS +  +GGD+FLLD
Sbjct:   397 RLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLD 456

Query:   433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492
             T  ++YASLQ+QA +A+     ++T    +++E+ KEKGN AYK KQW KA++FYTEAIK
Sbjct:   457 TTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIK 516

Query:   493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
             LNG NATYY NRAAA+LE   F QAE DCTKA+ +DKKNVKAYLRRGTARE L  YKEA
Sbjct:   517 LNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEA 575

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 196/421 (46%), Positives = 254/421 (60%)

Query:    33 DFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXX 92
             DFGAFIE                    GL+FA+ D+FD+EG VTGFG+P+W         
Sbjct:     6 DFGAFIEKVTISPTSTSSSPPSLQ---GLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query:    93 XXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXX 152
                    L+E GAT +G T++DE AYSING N HY TP NP A  ++P            
Sbjct:    63 TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query:   153 XDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
               LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD   L
Sbjct:   123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query:   213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG-RQVLKHEN 271
             + VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK FG   V+K  N
Sbjct:   183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query:   272 LGEYFDSKVPSLKGFHK-----TNGE--------LKNVMRLIQRYEFKNNHNEWIESVKP 318
             LGEY    VPSLK F       T  E        L + MRL+QR+EFK NH  WI SVKP
Sbjct:   243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query:   319 ALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK 378
                P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L   
Sbjct:   303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query:   379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY 438
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V ++ 
Sbjct:   363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDSLA 422

Query:   439 A 439
             A
Sbjct:   423 A 423

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 109/350 (31%), Positives = 167/350 (47%)

Query:   101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSL 160
             ++ GA C+GKT  DE A+ + G N  Y TP NPAAP ++P               VDF+L
Sbjct:     7 LQAGAVCLGKTCADELAFGLTGENAFYGTPLNPAAPDRVPGGSSSGSAVAVAAGEVDFAL 66

Query:   161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220
             G DT G +R+P++ CGI G RPS+G VS  G+ P++   DTVG FAR+ + L+ V  +LL
Sbjct:    67 GTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRVMSLLL 126

Query:   221 QLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
              +   +  S R  ++ +  F+  + PA R          K FG  VLK   L   F S+ 
Sbjct:   127 NVDPLSTVSGRLWLLQEG-FDAAE-PAVR----------KAFG-PVLKR--LAGSFPSRE 171

Query:   281 PSLKGFHKTNG-----ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 335
              SL+      G       + V + IQ  E  +    WIES +PAL             + 
Sbjct:   172 ISLRSIDGEAGVSGMDNWRQVFQPIQWAEIWSTLGTWIESARPALGERTRRNFELAKGLD 231

Query:   336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG--GKEMLSEDYQNRAFSLL 393
               ++    + R   R+A++ +L  + ++  PT   P P  G  G +    DY  R  + +
Sbjct:   232 RRLLPAALARRERYRAALARVLGPEDVICFPTVHAPAPLKGSLGLDRTQGDYFPRVLARM 291

Query:   394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 443
             +IA +    Q+++P    +  P  +S +A  G D FL+   Q + A L +
Sbjct:   292 AIAGICRLPQISLPAVEVEGAPVGLSLLAAEGNDAFLMAFAQGVAAVLDD 341

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 204 (76.9 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
 Identities = 41/109 (37%), Positives = 59/109 (54%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA  +GKT +DEFA   +  N  + T  NP   +++P                 FS
Sbjct:   111 LAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFS 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
             LG DT G +R P++FC + G +PSYG VS  G++  ++SLD +G F +D
Sbjct:   171 LGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKD 219

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 60/193 (31%), Positives = 89/193 (46%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA   GKT +DEFA   +  N  +    NP    ++P                  +
Sbjct:   111 LKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVA 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV- 215
             LG DT G +R P+AFCGI+G +P+YGAVS  G++  ++SLD +G FAR   D  +L +V 
Sbjct:   171 LGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVI 230

Query:   216 -GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENL 272
              GH       A    P  +   +   + LKI  P +  +  +    +K     +   E+L
Sbjct:   231 AGHDPKDSTSADIEYPDYLSFLNQDIKGLKIGLPKEYFIDGIDAGVKKAIDDAIKVLESL 290

Query:   273 GEYFDS-KVPSLK 284
             G  F+   +P  K
Sbjct:   291 GAVFEEVSLPHTK 303

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)]

 Score = 203 (76.5 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 47/144 (32%), Positives = 64/144 (44%)

Query:    60 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
             GL +AV +LFDIEG VT     +                 L   GA  +G   +DEFAY 
Sbjct:    68 GLPYAVKNLFDIEG-VTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFAYG 126

Query:   120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
                 N HY    NP    ++                V  SLG DT G +RVP++ CG+ G
Sbjct:   127 FTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGVWG 186

Query:   180 FRPSYGAVSHMGIIPISTSLDTVG 203
              +P++G +S  G  P   S+D +G
Sbjct:   187 LKPTFGRLSRRGTYPFVHSIDHLG 210

GO:0018750 "biuret amidohydrolase activity" evidence=IDA

GO:0019381 "atrazine catabolic process" evidence=IDA

SGD|S000004907 HER2 "Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 212 (79.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
 Identities = 47/123 (38%), Positives = 64/123 (52%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ---MPXXXXXXXXXXXXXDLV 156
             L + G   +GKT +DEF     G +       NP  P +   +              DLV
Sbjct:    84 LKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLV 143

Query:   157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVG 216
             DF+LG DT G VR+P+ +  +LGF+PSYG +S  G+I  S SLDTVG  ++   +LR V 
Sbjct:   144 DFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVF 203

Query:   217 HVL 219
             H L
Sbjct:   204 HTL 206

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA;IDA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IGI

CGD|CAL0003013 orf19.3956 [Candida albicans (taxid:5476)]

 Score = 218 (81.8 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L   G+  IGK+ +DEF       N +++  TNP   +++P              +  FS
Sbjct:    79 LSSNGSKLIGKSNLDEFGMGSANYNSYFNKVTNPYDNTKVPGGSSGGSAASVAGKMCSFS 138

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
             +G DT G VR+P+++C + GF+P+YG +S  G+IP + +LDTVG    +  I++ V  VL
Sbjct:   139 IGTDTGGSVRLPASYCNVFGFKPTYGRISRWGVIPYAQTLDTVGIIGENVNIIKRVYDVL 198

GO:0005739 "mitochondrion" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVH5	OE64C_ARATH	No assigned EC number	0.7211	0.9981	0.9388	yes	no
Q9MUK5	TOC64_PEA	No assigned EC number	0.7015	0.9981	0.9325	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	554
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	0.0
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-121
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	1e-63
pfam01425	431	pfam01425, Amidase, Amidase	2e-54
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	6e-43
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	2e-42
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	2e-41
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	6e-41
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	6e-40
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	2e-38
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	1e-37
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	5e-37
PRK05962	424	PRK05962, PRK05962, amidase; Validated	6e-33
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	5e-32
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	3e-27
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	6e-24
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	5e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-22
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	6e-22
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	5e-21
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	5e-21
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	3e-19
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	1e-18
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-18
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	1e-17
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	7e-17
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	2e-15
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-14
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	5e-14
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-13
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	1e-13
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	1e-12
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	4e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-09
PRK06565	566	PRK06565, PRK06565, amidase; Validated	7e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-06
PRK05962	424	PRK05962, PRK05962, amidase; Validated	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	0.003
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  537 bits (1384), Expect = 0.0
 Identities = 239/421 (56%), Positives = 303/421 (71%), Gaps = 16/421 (3%)

Query: 33  DFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR 92
           D+GAF+EK  L     P       PL GL+FAV D+FD+EGYVTGFG+P+WARTHSAA+ 
Sbjct: 6   DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           T+  V  ++ GGATC+GKT++DE AYSING N HY TPTNP AP ++PGGSSSG+AVAV 
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
           A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S DTVGWFARDP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGR-QVLKHEN 271
           + VGHVLLQ P      P QIIIA+DCF+L  IP DR+VQV++KS EKLFG   ++KH N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241

Query: 272 LGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFKNNHNEWIESVKPAL 320
           LG+Y + KVPSLK F  K   E          L + MRL+QRYEFK NH EWI +VKP  
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301

Query: 321 DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
            P IS  I E +  +E  I+ C+S++ E+R+A+++LL + G+LV PT   PPPKL     
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361

Query: 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
             E ++ RAFSLLSIA VSG CQV++PLG +D  P SVS +A+HG D FLL+ V+++Y +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421

Query: 441 L 441
           +
Sbjct: 422 I 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  362 bits (932), Expect = e-121
 Identities = 153/412 (37%), Positives = 208/412 (50%), Gaps = 26/412 (6%)

Query: 34  FGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT 93
           F AFI K        PLP  A  PL GL FAV D+FD+ GYVTG G+P+W      A+RT
Sbjct: 7   FNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRT 61

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153
           +  V  L+  GA  +GKT  DE A+S+NG N HY TP NPAAP ++PGGSSSG+A AVA 
Sbjct: 62  APAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAG 121

Query: 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 213
            L DF+LG DT G VR P++FCG+ G RP++G +S  G++P++ S DTVGWFARD  +L 
Sbjct: 122 GLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLE 181

Query: 214 HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 273
            VG VLL          ++++I  D F LL       ++  +       G          
Sbjct: 182 RVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLRPHLG---------- 231

Query: 274 EYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGE 330
                     K        L       R++Q  E    H  WI S  P L P ++     
Sbjct: 232 --------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAA 283

Query: 331 MLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF 390
             E++   +E  ++ R      +++LL  D +L+ PT     P  G      E Y+ RA 
Sbjct: 284 GAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERAL 343

Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442
            LL IA ++G  Q+++PL   D  P  +S I   G DR LL   Q + A+  
Sbjct: 344 RLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAARS 395

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  215 bits (550), Expect = 1e-63
 Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 24/392 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D  G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 73  PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N  +    NP    ++PGGSS G+A AVAA LV  +LG DT G +R+P+AFCG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPR 231
           ++G +P+YG VS  G++P+++SLD +G  AR   D  +L  V  G      P        
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVP 250

Query: 232 QIIIADDCFELLKI--PADRVVQVVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHK 288
             +   D  + L+I  P +      +       F   V   E  G         L     
Sbjct: 251 PALAGKD-LKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDY 309

Query: 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISETVIE--NCKS 344
                       +RY  +   + + ++      P++   I  G  L +S    +    ++
Sbjct: 310 ALAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRA 367

Query: 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSG 400
            +  +R A   L ++  +L+TPTT  P PK+G  E   +D    Y    F     A+++G
Sbjct: 368 QKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAG 425

Query: 401 CCQVTVPLGYYDKC-PTSVSFIARHGGDRFLL 431
              ++VP G+     P  +  I     D  LL
Sbjct: 426 LPAISVPAGFTADGLPVGLQLIGPAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  189 bits (483), Expect = 2e-54
 Identities = 108/404 (26%), Positives = 167/404 (41%), Gaps = 47/404 (11%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  ++ D  D++G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 46  PLHGVPISLKDNIDVKGVPTTAGSK--ALEGYPPPYDATVVERLRAAGAVILGKTNMDEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A      N  +    NP   S+ PGGSS G+A AVAA LV  ++G DT G +R+P+AFCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---------------DPKILRHVGHVLLQ 221
           ++G +P+YG VS  G++P S+SLD VG  AR               DP         +  
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPD 223

Query: 222 LPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                ++S + + I    +D +  L     R V+    + E L G +V   E        
Sbjct: 224 FAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKH 280

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISE 336
            +P             N+  L + Y                L  ++    E+G     + 
Sbjct: 281 ALPLYYIIAPAEA-SSNLSDLDELYP---------RIRDELLGDEVKRRIELGAYALSAG 330

Query: 337 TVIENCKS---IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
                      +R  +R   + L ++  +L++PTT  P P+LG     ++        L 
Sbjct: 331 YSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLD 387

Query: 394 SI-----ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 431
                  A+++G   +++P G+  D  P  +  I   G D  LL
Sbjct: 388 FTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  159 bits (404), Expect = 6e-43
 Identities = 77/184 (41%), Positives = 99/184 (53%), Gaps = 5/184 (2%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+ FAV +LFD+ G  T  G  +  R    A+R +T V  L   GA  +G   
Sbjct: 67  EPLGPLAGVPFAVKNLFDVAGLTTLAG-SKINRDRPPATRDATAVRRLEAAGAVLVGALN 125

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DE+AY     N HY    NP   +++ GGSS G+A AVAA LV F+LG DT G +RVP+
Sbjct: 126 MDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPA 185

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQR 228
           + CGI G +P+YG +S  G  P   SLD +G FAR    L  V  VL     Q PF A R
Sbjct: 186 SLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADR 245

Query: 229 SPRQ 232
               
Sbjct: 246 PAEP 249

Length = 465

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  157 bits (400), Expect = 2e-42
 Identities = 108/419 (25%), Positives = 178/419 (42%), Gaps = 64/419 (15%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  AV D    +G VT           + AS+          +TV+  L + GA  
Sbjct: 55  PLAGIPIAVKDNISTKGIVT-----------TCASKILENYIPPYDATVIERLKQAGALI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           IGKT +DEFA   +     +    NP    ++PGGSS G+A AVAADL  FSLG DT G 
Sbjct: 104 IGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLP 223
           +R P++FCG++GF+P+YG VS  G++  ++SLD +G FAR  + +  +  V+     +  
Sbjct: 164 IRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDS 223

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK-HENLGEYFDSKVPS 282
            +A+    +       FE LK     +   V+K   +   ++V +  EN  E  +     
Sbjct: 224 TSAKVPDPEF------FEELKKDLKGLKVGVVKEFSEEMDKEVQEKFENALEVLEELGAE 277

Query: 283 LKGFHKTNGELKNVM---RLIQRYEFKNNH---------------NEWIESVKPALDPDI 324
           +         +K  +    +I   E  +N                N   E          
Sbjct: 278 IVEVSF--PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGF 335

Query: 325 SAE------IGEML---EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 375
             E      +G         +      + +R  +      L ++  ++V+PT    P K+
Sbjct: 336 GEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKI 395

Query: 376 GGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
           G  E L +  +     +L++ A+++G   ++VP G  +K  P  +  I +   D+ LL 
Sbjct: 396 G--EKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score =  154 bits (392), Expect = 2e-41
 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 7/160 (4%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSA-ASRTSTVVSTLVEGGATCIGKT 111
            AP PL G+  +V DLFD+ G VT  G        +  A+  +  V+ L   GA  IG+T
Sbjct: 67  AAPSPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRT 124

Query: 112 VVDEFAYSINGTNKHYDTPTNPAA----PSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            + EFA+S  G N HY TP NP        ++PGGSSSGAAV+VA  +   +LG DT G 
Sbjct: 125 NMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGS 184

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           +R+P+A CG+ GF+P+   V   G +P+ST+LD++G  AR
Sbjct: 185 IRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLAR 224

Length = 454

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score =  153 bits (388), Expect = 6e-41
 Identities = 114/404 (28%), Positives = 171/404 (42%), Gaps = 60/404 (14%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DLFD+ G VT  G    A   + ASR + VV+ L   G   IG+T + EF
Sbjct: 69  LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127

Query: 117 AYSINGTNKHYDTPTNPAAPSQ--MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           A+S  G N HY TP NP +     +PGGSSSG+AVAVAA LV  ++G DT G VR+P+AF
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--------DPKILRHVGHVLLQLPFAA 226
            G++G++ + G  S  G+ P++ SLD++G   R        D  +       +++ P A 
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247

Query: 227 QR--SPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK 284
            R   P  ++   D  E    P   V      + E+L     L             P+ +
Sbjct: 248 LRLVVPETVV--FDDAE----PG--VRAAFEAAVERLQAAGALVER-------QAFPAFQ 292

Query: 285 GFHKTNGELKNVMRLIQRY------EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEIS 335
                      ++ LI R+      E    H E ++    A +DP +     +G  +  S
Sbjct: 293 E----------ILDLIARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITAS 342

Query: 336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQ------NRA 389
           + +       R  + + ++  L    +L TPT A+  P L     L  D         + 
Sbjct: 343 DYI--ALLEARERLIAQVTREL-GGALLATPTVAHVAPPLAP---LEADDDLFFATNLKT 396

Query: 390 FSLLSIASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
                  +    C V++P G      P  +   A  G D  LL 
Sbjct: 397 LRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLR 440

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score =  150 bits (381), Expect = 6e-40
 Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
               PL G+ FAV +LFD+ G  T  G  +  R  + A R +T+V  L   GA  +G   
Sbjct: 60  SPLGPLAGVPFAVKNLFDVAGLTTLAG-AKINRDLAPAKRDATLVQRLSAAGAVLVGALN 118

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFAY     N HY    NP   +++ GGSS G+A AVAA LV FSLG DT G +RVP+
Sbjct: 119 MDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPA 178

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           + CG+ G +P+YG +S  G+ P   SLD VG FAR
Sbjct: 179 SLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFAR 213

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  146 bits (371), Expect = 2e-38
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  A+ D    +G  T           + AS+          +TVV  L   GA  
Sbjct: 55  PLAGIPIAIKDNICTKGIRT-----------TCASKILENYVPPYDATVVEKLKAAGAVI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +  N  +    NP    ++PGGSS G+A AVAA L   +LG DT G 
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P+AFCG++G +P+YG VS  G+I  ++SLD +G FAR 
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFART 204

Length = 459

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score =  146 bits (371), Expect = 1e-37
 Identities = 74/181 (40%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 33  DFGAFIEKL---QLLPPPQPLPPKAPH--PLTGLSFAVSDLFDIEGYVTGFGHPEWARTH 87
           D   +I       LL     L  + P   PL G+ FAV D  D+ G  T    P +A T 
Sbjct: 39  DPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT- 97

Query: 88  SAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147
               R +TVV+ L   GA  IGKT +D+FA  + GT   Y    N   P  + GGSSSG+
Sbjct: 98  --PERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGS 155

Query: 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           AVAVA  LV F+LG DT G  RVP+AF  I+G +P+ G +S  G++P   +LD V  FA 
Sbjct: 156 AVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFAL 215

Query: 208 D 208
            
Sbjct: 216 T 216

Length = 600

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score =  144 bits (365), Expect = 5e-37
 Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ FAV D  D+ G  T    P +A T       +TVV+ L   GA  +GKT +D+F
Sbjct: 31  PLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLDQF 87

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A  + GT   Y    N   P+ + GGSSSG+AVAVA  LV F+LG DT G  RVP+A   
Sbjct: 88  ATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNN 147

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQ 232
           I+G +P+ G VS  G++P   SLD V  FA       ++LR       + P++       
Sbjct: 148 IVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA 207

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
                    L + P    V V   +  + FG
Sbjct: 208 ---------LRRFPPPPRVGVPRAAQLEFFG 229

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score =  130 bits (328), Expect = 6e-33
 Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G   ++ DLFD+ G  T  G     R    A   + +V  L   GA  IGKT + EF
Sbjct: 45  PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A++  G N HY  P N   P+++PGGSSSGAAV+VA    + ++G DT G VR+P+A  G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           ++GF+P+   +   G  P+S SLD++G  AR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194

Length = 424

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  128 bits (324), Expect = 5e-32
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 54  APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVV 113
           A   L G+   + D  +  G  T  G P        A   + VV  L++ GA  +GK  +
Sbjct: 70  AALLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPA-TDAPVVQRLLDAGAVPLGKANM 127

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            E A+ I   N  +    NP  P+++ GGSS G A AVAA L    LG DT G VR+P+A
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187

Query: 174 FCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            CG++G RP+ G  S  G++PIS + DTVG  AR
Sbjct: 188 LCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIAR 221

Length = 472

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score =  114 bits (287), Expect = 3e-27
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           S  +TVV  L+  GA  + K   DE      G    +    NP   S++ GGSSSG+A A
Sbjct: 68  SYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-A 126

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--- 207
                + F++G DT   VR+P++F G +GF+PSYGA+S  G+   ++SLDTV +F     
Sbjct: 127 TFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVN 186

Query: 208 DPKILRHV 215
           D  IL  V
Sbjct: 187 DAIILSKV 194

Length = 439

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score =  105 bits (263), Expect = 6e-24
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAV 149
           S  +TVV+ L++ GAT +GK   ++  +S  G++     P  NP  P    GGSSSG+A 
Sbjct: 119 SFDATVVTRLLDAGATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAA 177

Query: 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            VAA  VD ++G D  G +R+PSA+CGI G +P++G V + G  PI  ++D +G    
Sbjct: 178 LVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTA 235

Length = 502

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score =  101 bits (254), Expect = 5e-23
 Identities = 105/414 (25%), Positives = 161/414 (38%), Gaps = 60/414 (14%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
             PL G+  A+ D  D+ G VT +G    A    AA+  + VV  L   GA  IGKT V 
Sbjct: 70  RLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNVP 126

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           E        +  +    NP  P++ PGGSS G+A AVAA L   +LG D  G +R+PS +
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHVGHVL--LQLPF--AAQ 227
           CG+ G +P    +S          L   G  AR   D  +L      +   +  F  AA 
Sbjct: 187 CGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAA 246

Query: 228 RSPRQIIIADDCFELLKIPADRVVQV------VIKSTEKL---FGRQVLKHENLGEYFDS 278
           R P ++ IA       ++P    V+        +     L    G  V+  +   +Y   
Sbjct: 247 REPGRLRIALS----TRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA- 299

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETV 338
              +   +      L    R I        H + +E+   A+     A +G     S+  
Sbjct: 300 --ATYANY------LPRFFRGISDDADAQAHPDRLEARTRAI-----ARLGSF--FSDRR 344

Query: 339 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIA 396
           +   ++    + + I S+  D  ++VTP TA  P ++G        YQ R    +LL + 
Sbjct: 345 MAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGA-------YQRRGAVSTLLLVV 397

Query: 397 SVSGCCQV---------TVPLGY-YDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
                 QV          VP  +  D  P SV  + R   +  LL     + ++
Sbjct: 398 QRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451

Length = 462

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 36/89 (40%), Positives = 51/89 (57%)

Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
           E     GN  YK   + +A+ +Y +A++L+ +NA  Y N AAAY + G + +A  D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           + LD  N KAY   G A   LG Y+EA+E
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 98.6 bits (246), Expect = 6e-22
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+   V + F++ G  T +G P+  R +  A   +  V+ L   GA  +GKT V   
Sbjct: 75  PLLGIPVTVKESFNVAGLPTTWGFPDL-RDYVPA-EDAVAVARLKAAGAVILGKTNVPLG 132

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                  N+ Y T  NP   ++ PGGSS G+A A+AA     S+G D  G +RVP+ +CG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192

Query: 177 ILGFRPSYGAVSHMGIIP 194
           +   +P+ G V   G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210

Length = 490

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 62/194 (31%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DL   +G  T  G P +A         + VV  +   GA  IGKT   EF
Sbjct: 77  WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
               +  N  Y    NP  PS+  GGSS GAA A+A  ++  + G D +G +R P+AF  
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194

Query: 177 ILGFRPSYGAVSH----------------MG--IIPISTSLDT-VGWFARDPKILRHVGH 217
           + GFRPS G V H                MG  +  ++  L    G+  RDP  L     
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPA 254

Query: 218 VLLQLPFAAQRSPR 231
              Q   A  R  R
Sbjct: 255 RFAQPLEADLRGKR 268

Length = 484

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 24/176 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA---SRTSTVVSTLVEGGATCIGKTVV 113
            L G+  ++ D+F   G+ T  G    +R   A       +  V+ L E GA  +GKT  
Sbjct: 71  LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            EF +     +  Y    NP       GGSS GAA AVA  +   S+G D  G VR+P++
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186

Query: 174 FCGILGFRPSYGAV-----SHMGII----PISTS-------LDTVGWF-ARDPKIL 212
           FCG  GF+P++G V     S  G +    P++ +       LD +    ARD   L
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSAL 242

Length = 466

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           PL G+   + D  D  +   T  G    A   +  +R + +V+ L + GA  +GK  + E
Sbjct: 72  PLHGIPVLLKDNIDAADPMPTTAG--SLALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129

Query: 116 FA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRV 170
           +A      S +G +       NP A  + P GSSSG+  AVAA L   ++G +T G +  
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189

Query: 171 PSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           P+A  G++G +P+ G VS  GI+PIS S DT G   R
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226

Length = 497

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 90  ASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT------NKHYDTPTNPAAPSQM-PGG 142
           A + +T+V  L E GA  +GK  + E+A  ++ T       K      NP  P +    G
Sbjct: 168 ADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQN-LNPYGPIKFDTSG 226

Query: 143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV 202
           SSSG+A  VAAD    ++G +T G +  P+A   ++G RPS G VS  GIIP++ +LDT 
Sbjct: 227 SSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTA 286

Query: 203 GWFARDPK 210
           G  AR  K
Sbjct: 287 GPMARTVK 294

Length = 536

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 77.4 bits (191), Expect = 8e-18
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 520
            +AE  K  GN  +K   + +AI  Y +A++L+ +NA  Y N A AYL+ G  + +A  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 521 CTKAINLDK 529
             KA+ LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 84  ARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFA----------YSINGTNKHYDTPTNP 133
           A     +S  + +V+ L E GA  +GK  + E A          YS  G       P   
Sbjct: 105 ALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTI--NPYGT 162

Query: 134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII 193
                  GGSS+G+A+AVAA+    S+G +T G +  P+    ++G +P+ G +S  GII
Sbjct: 163 GEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGII 222

Query: 194 PISTSLDTVGWFAR---DPKIL 212
           P + S DT G FAR   D  IL
Sbjct: 223 PFTYSQDTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D+ G  T FG          A+  S VV  L   GA  +GKT   E 
Sbjct: 81  PLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                 +   +    NP +    PGGSS G+A AVAA LV  ++G D  G VR+P+A+  
Sbjct: 138 GQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTH 197

Query: 177 ILGFRPSYGAVS 188
           ++G +P  G +S
Sbjct: 198 LVGIKPQRGRIS 209

Length = 483

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
           P PL G+   V    D  G+ T  G          A   S VV  L + GA  IG+T   
Sbjct: 70  PGPLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTP 127

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
            F+Y     N  +    NP  PS  PGGSS GAA AVAA +   + G D  G +R P+  
Sbjct: 128 AFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYA 187

Query: 175 CGILGFRPSYGAV-------SHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ 227
           CG+ G RP+ G V           I     S        + P + R V  + L L   A 
Sbjct: 188 CGVHGLRPTLGRVPAYNASSPERPIGAQLMS-------VQGP-LARTVADLRLALAAMAA 239

Query: 228 RSPR 231
             PR
Sbjct: 240 PDPR 243

Length = 469

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
              E  +I   S  + +   +K+ A   KEKGN+AY++K + KAI  Y++AI+    +  
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           YYSNRAA +   G + +   D T A+ LD    KA  RR  A + LG Y +A+
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 74.3 bits (182), Expect = 5e-14
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMPGGSSSGAA 148
           +T+V  L   GA  +GKT + E+A  +     NG +       NP + +  P GSSSG+A
Sbjct: 264 ATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSA 323

Query: 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            A  +D    ++G +T G +  P++    +G++PS G V++ GIIP+S+  DT G   R
Sbjct: 324 TAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTR 382

Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 38/88 (43%), Positives = 55/88 (62%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  ++K  +A+ D  +  A+  YT+AI L+ NNA  Y++RA A ++ G+F +A AD  K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEA 551
           AI LD    KAYLR+GTA   L  Y+ A
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTA 89

Length = 356

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           L E GA  + KT + ++    +G +  +    NP    Q PGGSS+GA  A AA      
Sbjct: 112 LREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLH 171

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           LG D  G VR+P+ +CGI+G +PS G +
Sbjct: 172 LGTDIGGSVRLPAGWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 46  PPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA 105
             +P         +G+   + D  D+ G  T  G   W      A   S      +  G 
Sbjct: 64  AARPGSQGGF--FSGVPTFIKDNVDVAGLPTMHGSDAWTPR--PAKADSDFARQFLATGL 119

Query: 106 TCIGKTVVDEFAYSINGTNKHYD-TPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
             +GKT + EF +S   + +H    P  NP       G SS G+A  VAA +V  +   D
Sbjct: 120 ISLGKTQLPEFGFS--ASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHAND 177

Query: 164 TVGGVRVPSAFCGILGFRPSYG------AVSHMGIIPIS------TSLDTVGWFA----- 206
             G +R+P+A CG++G +PS G       +  + +  ++      T  DT  ++      
Sbjct: 178 GGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERY 237

Query: 207 -RDPKILRHVGHV 218
            R+PK L  +G V
Sbjct: 238 YRNPK-LPPIGDV 249

Length = 468

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 87  HSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTN-PAAPSQMPGGSSS 145
           +  A++T   V  L + G   +G++   EF +  N ++     P N P   S+  GGSS 
Sbjct: 91  NYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK-NISDSSLHGPVNLPFDNSRNAGGSSG 149

Query: 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           GAA  V++ +V  +   D  G +R+P++F G++G +PS G +
Sbjct: 150 GAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIE 553
           +NA    N   A  + G + +A     KA+ LD  N +AY     A   LG  Y+EA+E
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Length = 69

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ +   D + ++G     G P +      A R +  +  L   GA C+GKT +   
Sbjct: 75  PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132

Query: 117 AYSINGTNK--HY---DTPTNPA---APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGV 168
           A   NG  +   Y   ++P N A   AP     GSS+GA  A AA    F L  +T    
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAP--FASGSSNGAGTATAASFSAFGLAEETWSSG 187

Query: 169 RVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           R P++  G+  + PS G +S  G  P++ ++D V  +AR
Sbjct: 188 RGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226

Length = 566

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 53.7 bits (127), Expect = 7e-08
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEA 519
            + AE     G       ++ +A+    +A+KLN ++ A    N    YL+ G + +A  
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              KA+ LD  N +A          LG Y+EA+E
Sbjct: 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALE 257

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           YK  ++ +A+  Y +A++L+ +NA  Y N   AY + G + +A     KA+ LD  
Sbjct: 45  YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.5 bits (111), Expect = 8e-06
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 421 IARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 480
           +  +     LL  +      L    +     + +         AE     G       ++
Sbjct: 52  LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111

Query: 481 LKAISFYTEAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINLDKKN---VKAYL 536
            +A+    +A+ L+ +     +  A  A  E G + +A     KA+ LD +     +A L
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171

Query: 537 RRGTAREMLGYYKEAIE 553
             G   E LG Y+EA+E
Sbjct: 172 ALGALLEALGRYEEALE 188

Length = 291

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368
           H +W+  +   +D  +   +   +++           R  +  A+   L    +   P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346

Query: 369 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 424
               P +       E+Y +R  +LL     +A+    C +T+P+      P  +   AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404

Query: 425 GGDRFLLDTVQNMYASLQE 443
           G DR LL    ++   L+ 
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423

Length = 424

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 14/50 (28%), Positives = 19/50 (38%)

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            A A L +G + +A A    A+       +A L  G A    G   EA  
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAA 52

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                A +   + +A++    A+      A        A L  G   +A A    A+  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKE 550
           A   +N A      G + +A     KA+ L ++         +A          LG Y E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 551 AIE 553
           A+E
Sbjct: 65  ALE 67

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           KA   + +A+KLN  +   Y +RA  +   G F QA  D  K+I+LD   + ++++ G  
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442

Query: 542 REMLG 546
           +   G
Sbjct: 443 QYKEG 447

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQ 516
           A           +   + +A+    +A++L       +   A   +N A  YL  G + +
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 517 AEADCTKAINLDKK 530
           A     KA+ L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489
           LLD  ++++  L ++ + A  +         +Q   I +         ++W KAI     
Sbjct: 122 LLDRAEDIFNQLVDEGEFAEGAL--------QQLLNIYQ-------ATREWEKAIDVAER 166

Query: 490 AIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544
            +KL G       A +Y   A   L S    +A     KA+  DKK V+A +  G     
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226

Query: 545 LGYYKEAIE 553
            G Y++A+E
Sbjct: 227 KGDYQKAVE 235

Length = 389

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
           A    N   AYL+ G + +A     KA+ LD  N
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	554
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PRK09201	465	amidase; Provisional	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK05962	424	amidase; Validated	100.0
PRK08310	395	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK07487	469	amidase; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK07056	454	amidase; Provisional	100.0
PRK07235	502	amidase; Provisional	100.0
PRK07486	484	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK06061	483	amidase; Provisional	100.0
PRK07869	468	amidase; Provisional	100.0
PRK06529	482	amidase; Provisional	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PRK06828	491	amidase; Provisional	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.37
PRK15359	144	type III secretion system chaperone protein SscB;	99.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.3
PRK15359	144	type III secretion system chaperone protein SscB;	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.19
KOG0553	304	consensus TPR repeat-containing protein [General f	99.17
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.17
KOG4234	271	consensus TPR repeat-containing protein [General f	99.15
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.15
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.12
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.1
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.07
PRK12370	553	invasion protein regulator; Provisional	99.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.01
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.99
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.98
KOG1126	638	consensus DNA-binding cell division cycle control	98.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.97
KOG1125	579	consensus TPR repeat-containing protein [General f	98.96
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.94
PRK12370	553	invasion protein regulator; Provisional	98.94
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.93
KOG1126	638	consensus DNA-binding cell division cycle control	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.92
PRK11189	296	lipoprotein NlpI; Provisional	98.92
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.9
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.86
PF13371	73	TPR_9: Tetratricopeptide repeat	98.86
PRK15331	165	chaperone protein SicA; Provisional	98.85
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.84
KOG4555	175	consensus TPR repeat-containing protein [Function	98.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.84
PLN02789	320	farnesyltranstransferase	98.84
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.8
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.77
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.76
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.72
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.67
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.61
PRK10803	263	tol-pal system protein YbgF; Provisional	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.59
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.59
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.58
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.56
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.56
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.49
PLN02789	320	farnesyltranstransferase	98.48
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.47
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.45
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.43
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.41
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.39
KOG2076	895	consensus RNA polymerase III transcription factor	98.37
PF13512	142	TPR_18: Tetratricopeptide repeat	98.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.36
KOG2076	895	consensus RNA polymerase III transcription factor	98.36
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.35
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.3
KOG4234	271	consensus TPR repeat-containing protein [General f	98.3
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.25
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.24
KOG1125	579	consensus TPR repeat-containing protein [General f	98.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.2
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.2
PF13431	34	TPR_17: Tetratricopeptide repeat	98.2
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.17
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.13
PRK11906	458	transcriptional regulator; Provisional	98.12
PRK10803	263	tol-pal system protein YbgF; Provisional	98.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.1
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.1
PRK11906	458	transcriptional regulator; Provisional	98.09
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.08
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.05
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.04
PF13428	44	TPR_14: Tetratricopeptide repeat	98.03
PRK14574	822	hmsH outer membrane protein; Provisional	98.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.01
PF13428	44	TPR_14: Tetratricopeptide repeat	98.01
PRK15331	165	chaperone protein SicA; Provisional	98.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.98
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.98
KOG2003	840	consensus TPR repeat-containing protein [General f	97.92
PF13512	142	TPR_18: Tetratricopeptide repeat	97.91
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.9
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.89
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.88
PF13371	73	TPR_9: Tetratricopeptide repeat	97.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.85
KOG1129	478	consensus TPR repeat-containing protein [General f	97.83
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.83
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.83
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.82
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.8
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.76
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.75
KOG2003	840	consensus TPR repeat-containing protein [General f	97.73
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.73
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.72
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.7
PF12688	120	TPR_5: Tetratrico peptide repeat	97.67
KOG1310	758	consensus WD40 repeat protein [General function pr	97.63
PRK14574	822	hmsH outer membrane protein; Provisional	97.62
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.59
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.59
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.58
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.57
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.57
KOG1129	478	consensus TPR repeat-containing protein [General f	97.56
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.5
KOG4555	175	consensus TPR repeat-containing protein [Function	97.46
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.42
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.38
PRK10941	269	hypothetical protein; Provisional	97.38
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.37
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.37
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.34
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.33
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.28
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.27
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.23
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.07
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.07
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.05
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.03
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.87
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.79
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.79
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.75
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.72
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.71
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.54
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.28
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.25
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.24
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.23
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.13
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.11
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.92
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.91
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.88
PLN03077	857	Protein ECB2; Provisional	95.86
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.84
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.74
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.71
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.7
COG2912	269	Uncharacterized conserved protein [Function unknow	95.43
PLN03218	1060	maturation of RBCL 1; Provisional	95.38
PLN03218	1060	maturation of RBCL 1; Provisional	95.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.27
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.25
KOG2471	696	consensus TPR repeat-containing protein [General f	95.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.12
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.12
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.95
KOG3364	149	consensus Membrane protein involved in organellar	94.92
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.74
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.54
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.48
KOG1310	758	consensus WD40 repeat protein [General function pr	94.44
PRK04841	903	transcriptional regulator MalT; Provisional	94.29
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.26
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.26
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.21
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.99
PRK04841	903	transcriptional regulator MalT; Provisional	93.95
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.56
PLN03077	857	Protein ECB2; Provisional	93.51
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	93.37
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.04
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.02
KOG1585	308	consensus Protein required for fusion of vesicles	93.02
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.95
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.86
PRK10941	269	hypothetical protein; Provisional	92.83
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.82
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.75
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.71
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.67
KOG1586	288	consensus Protein required for fusion of vesicles	92.63
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.39
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.33
KOG1585	308	consensus Protein required for fusion of vesicles	92.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.05
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.69
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	91.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.49
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.97
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.95
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.87
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.46
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.45
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.19
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.63
KOG2471	696	consensus TPR repeat-containing protein [General f	89.6
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.42
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.39
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.04
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.34
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.03
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	87.95
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.78
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.65
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.54
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.59
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.43
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.24
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	82.47
KOG0529	421	consensus Protein geranylgeranyltransferase type I	82.29
KOG0529	421	consensus Protein geranylgeranyltransferase type I	81.92
COG3947	361	Response regulator containing CheY-like receiver a	81.33
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	80.42
COG2912	269	Uncharacterized conserved protein [Function unknow	80.13

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=6.6e-89  Score=693.01  Aligned_cols=405  Identities=59%  Similarity=1.011  Sum_probs=335.2

Q ss_pred             ccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeee
Q 008755           30 IKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIG  109 (554)
Q Consensus        30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~g  109 (554)
                      .|+++|||++..+.+.    ..+...|||+||||+|||+|+++|++||+||+.+.+.+.++.+||++|+|||++|||++|
T Consensus         3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG   78 (422)
T PLN02722          3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG   78 (422)
T ss_pred             cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence            5778999999864421    112467999999999999999999999999998875334567999999999999999999


Q ss_pred             ecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCcccc
Q 008755          110 KTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH  189 (554)
Q Consensus       110 kt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~  189 (554)
                      |||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+
T Consensus        79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~  158 (422)
T PLN02722         79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST  158 (422)
T ss_pred             EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccc
Q 008755          190 MGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVL  267 (554)
Q Consensus       190 ~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv  267 (554)
                      .|++|+++++|++|||+|+++|+..+++++.+.+..+...+.+|.+..+.+......++++.+.++++++.+.  |+.+ 
T Consensus       159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v-  237 (422)
T PLN02722        159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV-  237 (422)
T ss_pred             CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee-
Confidence            9999999999999999999999999999998877666666778888755442112234678888888888776  5554 


Q ss_pred             eeccCcccccccCCChhhHh-----------hhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCH
Q 008755          268 KHENLGEYFDSKVPSLKGFH-----------KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE  336 (554)
Q Consensus       268 ~~~~l~~~v~~~~p~~~~~~-----------~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~  336 (554)
                      +...+...++...+.+..+.           .....+...+..+..++....+..|+....+.++|.++.+++.|..++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~  317 (422)
T PLN02722        238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE  317 (422)
T ss_pred             eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence            33333222222222221110           0011122344446666777778888877778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCc
Q 008755          337 TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT  416 (554)
Q Consensus       337 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~  416 (554)
                      .+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........++..++.+|.++|++|+|+||||+|..+|+|+
T Consensus       318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv  397 (422)
T PLN02722        318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV  397 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence            99999999999999999999999999999999999998875423333444455678999999999999999999899999


Q ss_pred             eeEEEeccCCcHHHHHHHHHHHH
Q 008755          417 SVSFIARHGGDRFLLDTVQNMYA  439 (554)
Q Consensus       417 g~~~~~~~~~d~~ll~~a~~le~  439 (554)
                      |+|+++++++|..++++++++..
T Consensus       398 Glqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        398 SVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             EEEEECCCCChHHHHHHHHHHHh
Confidence            99999999999999999998764

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-89  Score=699.41  Aligned_cols=419  Identities=26%  Similarity=0.330  Sum_probs=338.0

Q ss_pred             hHHHhhhhhhhhHHHHHH---------Hhh--hccCCcCceeeccccCCCC--CC-------CCCCCCCCCCCceeeecc
Q 008755            8 LWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSD   67 (554)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~~pL~Gvp~~vKD   67 (554)
                      +..+++..|++.+..++.         ++|  +.|+.+|||+....+.++.  +|       +++...|||+||||+|||
T Consensus         4 ~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKD   83 (475)
T COG0154           4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKD   83 (475)
T ss_pred             hhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEee
Confidence            456678888887655552         233  7789999999998886543  32       134567899999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (554)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs  147 (554)
                      ||+|+|++||+||+.+.+  +++.+||++|+||+++|||++||||||||+++.+|+|++||+|+||||++|+||||||||
T Consensus        84 n~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGS  161 (475)
T COG0154          84 NIDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGS  161 (475)
T ss_pred             ccccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHH
Confidence            999999999999999987  478999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (554)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-  226 (554)
                      |||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|+..+++++.+.+..| 
T Consensus       162 AaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~  241 (475)
T COG0154         162 AAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS  241 (475)
T ss_pred             HHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998764432 


Q ss_pred             ---------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhh
Q 008755          227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT  289 (554)
Q Consensus       227 ---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~  289 (554)
                                     ..++.||++..+.... ...++++.++++++++.|.  |+++++         ..+|.+..... 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~-  310 (475)
T COG0154         242 PLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYA-  310 (475)
T ss_pred             ccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhh-
Confidence                           1234567776665432 2346689999999999987  777642         22232211000 


Q ss_pred             hhhHHHHHH-HHHHHHHHhhhHH--HHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCcEE
Q 008755          290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL  363 (554)
Q Consensus       290 ~~~~~~~~~-~~~~~e~~~~~~~--~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~D~l  363 (554)
                          ...+. .....+.+.....  +...+...++++++++++.|..++..+|.++...|...   ++.+.++|+++|+|
T Consensus       311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l  386 (475)
T COG0154         311 ----LAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL  386 (475)
T ss_pred             ----hhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence                00000 0000011111111  44555678999999999999999999999998888555   99999999999999


Q ss_pred             EEcCCCCCCCCCCC-CC-CchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          364 VTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       364 l~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      |+||+|.+||++++ .. ......+..+..||.++|++|+|+||||+|+. +|||+|+|+++++++|..|++++.++|+.
T Consensus       387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~  466 (475)
T COG0154         387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA  466 (475)
T ss_pred             EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999999997 21 11112222233589999999999999999998 59999999999999999999999999987


Q ss_pred             HHH
Q 008755          441 LQE  443 (554)
Q Consensus       441 l~~  443 (554)
                      ...
T Consensus       467 ~~~  469 (475)
T COG0154         467 LGW  469 (475)
T ss_pred             hCC
Confidence            543

>PRK09201 amidase; Provisional

Probab=100.00  E-value=7.6e-87  Score=690.71  Aligned_cols=410  Identities=26%  Similarity=0.354  Sum_probs=336.8

Q ss_pred             HHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccc
Q 008755            9 WVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (554)
Q Consensus         9 ~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~   70 (554)
                      ..+++.+|+++++.++     .    ++|  +.|+.+|||++...++++++|+       +++..|||+||||+|||+|+
T Consensus         5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   84 (465)
T PRK09201          5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD   84 (465)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence            4457888888876654     2    233  6789999999988776655542       35678999999999999999


Q ss_pred             cCCcccCCCChhhhhcCCCC-CCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 008755           71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV  149 (554)
Q Consensus        71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaa  149 (554)
                      ++|++||+||+.+.+  .++ ++||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||+
T Consensus        85 v~G~~tt~Gs~~~~~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa  162 (465)
T PRK09201         85 VAGLTTLAGSKINRD--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA  162 (465)
T ss_pred             cCCcccCcCChhhcc--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence            999999999999876  355 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--
Q 008755          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--  227 (554)
Q Consensus       150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~--  227 (554)
                      +||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+.  
T Consensus       163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~  242 (465)
T PRK09201        163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ  242 (465)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999886543221  


Q ss_pred             ---------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHcCCccceeccCcccccccCCChhhHhhhhhh
Q 008755          228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE  292 (554)
Q Consensus       228 ---------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~  292 (554)
                                     .++.||++..+.+  ....++++.++++++++.|....+   ++        .|.....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---v~--------~~~~~~~------  303 (465)
T PRK09201        243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---VE--------LPEAARA------  303 (465)
T ss_pred             ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---ec--------CCchhHH------
Confidence                           1335666664443  123578899999999988732111   11        1221111      


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCC
Q 008755          293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  372 (554)
Q Consensus       293 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  372 (554)
                       ...+..+...|....+..++....+.++|.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+|
T Consensus       304 -~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  382 (465)
T PRK09201        304 -RAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA  382 (465)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence             1111222334444555566655667899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC---c-hHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          373 PKLGGKEM---L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       373 p~~~~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      |+++....   . ...+...+..||.+||++|+|+||||+|..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  454 (465)
T PRK09201        383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ  454 (465)
T ss_pred             CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence            99875321   1 11122334458999999999999999998899999999999999999999999999864

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=1.5e-86  Score=686.97  Aligned_cols=390  Identities=27%  Similarity=0.390  Sum_probs=323.2

Q ss_pred             hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCC-CCCHHHHHHH
Q 008755           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL  100 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L  100 (554)
                      +.|+.+|||++...++++++|+       +++..|||+||||+|||+|+++|++||+||+.+.+  .++ .+||++|+||
T Consensus        29 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~p~~~dA~vV~rL  106 (452)
T TIGR02715        29 QADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRD--LAPAKRDATLVQRL  106 (452)
T ss_pred             HHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhcc--CCCCCCCHHHHHHH
Confidence            6789999999988776655442       35667999999999999999999999999999876  355 7999999999


Q ss_pred             HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (554)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl  180 (554)
                      |+||||++||||||||+++.++.|++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+|||||||
T Consensus       107 ~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~Gl  186 (452)
T TIGR02715       107 SAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGL  186 (452)
T ss_pred             HHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC-----------------CCCceEEEccchhhhc
Q 008755          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-----------------RSPRQIIIADDCFELL  243 (554)
Q Consensus       181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~-----------------~~~~~l~i~~~~~~~~  243 (554)
                      |||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+.                 .++.||++..+.+.  
T Consensus       187 KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~~--  264 (452)
T TIGR02715       187 KPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWFQ--  264 (452)
T ss_pred             eCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECcccc--
Confidence            99999999999999999999999999999999999999886533221                 23456776644431  


Q ss_pred             CCChHHHHHHHHHHHHHHcCCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHH
Q 008755          244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD  323 (554)
Q Consensus       244 ~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~  323 (554)
                      ...++++.++++++++.|....+         +  ..|.....       ...+..+...+....+..++....+.+.|.
T Consensus       265 ~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  326 (452)
T TIGR02715       265 QNADPEALAAVGRVAKALGATTI---------V--ELPDAERA-------RAAAFVITASEGGNLHLDALRTRPQDFDPA  326 (452)
T ss_pred             CCCCHHHHHHHHHHHHhcCCeee---------e--cCCchHHH-------HHHHHHHHHHHHHHHHHHHhhhchhhcCHH
Confidence            23578999999999988732111         1  11222111       111122233344444555665566789999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC----chHHHHHHHhhhhhccccc
Q 008755          324 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM----LSEDYQNRAFSLLSIASVS  399 (554)
Q Consensus       324 ~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~----~~~~~~~~~~~~t~~~nl~  399 (554)
                      ++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++....    ....+...+..||.+||++
T Consensus       327 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~  406 (452)
T TIGR02715       327 TRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFA  406 (452)
T ss_pred             HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhc
Confidence            999999998899999999999999999999999999999999999999999875311    1111222344589999999


Q ss_pred             CCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          400 GCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       400 G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      |+|++|||+|..+|+|+|+|+++++++|..++++++.+|+.
T Consensus       407 G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       407 GLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             CCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            99999999999899999999999999999999999999864

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK05962 amidase; Validated

Probab=100.00  E-value=4e-86  Score=677.42  Aligned_cols=396  Identities=24%  Similarity=0.355  Sum_probs=327.4

Q ss_pred             hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCC-CCCHHHHHHH
Q 008755           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL  100 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L  100 (554)
                      ++|+.+|||++...+.++++|+       +++..|||+||||+|||+|+|+|++||+||+.+.+  .++ ++||++|+||
T Consensus        10 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~dA~vV~rL   87 (424)
T PRK05962         10 ARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGADALIVQRL   87 (424)
T ss_pred             hhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcCChHHHHHH
Confidence            6789999999987776555432       35668999999999999999999999999999876  355 6899999999


Q ss_pred             HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (554)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl  180 (554)
                      |++|||++||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++++|+|||||||||+||+|||||||
T Consensus        88 ~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~Gl  167 (424)
T PRK05962         88 RNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGF  167 (424)
T ss_pred             HHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEccchhhhcCCChHHHHHHHHH
Q 008755          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIK  256 (554)
Q Consensus       181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~  256 (554)
                      |||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+    ..++.||++..+.+  ....++++.+++++
T Consensus       168 KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~  245 (424)
T PRK05962        168 KPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFEA  245 (424)
T ss_pred             ecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999988654322    22455777665443  22357889999999


Q ss_pred             HHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcC
Q 008755          257 STEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEI  334 (554)
Q Consensus       257 a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~  334 (554)
                      +++.|.  |++|++ .++        |.+.+...    .......+...+....+..+.......+++.++.++..+..+
T Consensus       246 a~~~L~~~G~~v~~-~~~--------~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  312 (424)
T PRK05962        246 SLAALEKAGARIAD-LAI--------DDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKV  312 (424)
T ss_pred             HHHHHHHCCCEEEE-ecc--------chHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCC
Confidence            998886  777643 111        22111000    000011223334444455566666678999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHH---HHHHhhhhhcccccCCceecccCCCC
Q 008755          335 SETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY  411 (554)
Q Consensus       335 s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~  411 (554)
                      +..+|.++++.|..+++.|.++|+++|+||+||+|.++|+++........+   ...++.||.++|++|+|++|||++. 
T Consensus       313 ~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~-  391 (424)
T PRK05962        313 PLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG-  391 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-
Confidence            999999999999999999999999999999999999999987532222212   2223458999999999999999984 


Q ss_pred             CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       412 ~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      +|+|+|+|+++++++|..++++++.+|+.+.
T Consensus       392 ~glPvGlqlvg~~~~D~~lL~~a~~le~~l~  422 (424)
T PRK05962        392 MALPAGLMLTARNGSDRRLLAAAASVEKLLE  422 (424)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            6999999999999999999999999998764

>PRK08310 amidase; Provisional

Probab=100.00  E-value=1.1e-85  Score=667.85  Aligned_cols=388  Identities=39%  Similarity=0.657  Sum_probs=323.9

Q ss_pred             cCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeee
Q 008755           31 KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGK  110 (554)
Q Consensus        31 ~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gk  110 (554)
                      ++++|||+.+.+.     ...++..|||+||||+|||+|+++|++||+||+.|.+...++.+||++|+|||++|||++||
T Consensus         4 ~~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK   78 (395)
T PRK08310          4 HDPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK   78 (395)
T ss_pred             CCccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence            4688999987542     12246789999999999999999999999999998653357789999999999999999999


Q ss_pred             cCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccC
Q 008755          111 TVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHM  190 (554)
Q Consensus       111 t~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~  190 (554)
                      ||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.
T Consensus        79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~  158 (395)
T PRK08310         79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE  158 (395)
T ss_pred             ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccce
Q 008755          191 GIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLK  268 (554)
Q Consensus       191 G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~  268 (554)
                      |+.|+++++|++|||||+++|+..+++++.+.+..+...+.++.+..+.+   ...++++.++++++++.|.  +.++++
T Consensus       159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~  235 (395)
T PRK08310        159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP  235 (395)
T ss_pred             CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee
Confidence            99999999999999999999999999999876544433356777765433   2357889999999999885  224432


Q ss_pred             eccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008755          269 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNE  348 (554)
Q Consensus       269 ~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~  348 (554)
                       .++.      ...+..       +...+..+...+.+..+..++......+.|.++.+++.+..++..+|.++.+.|+.
T Consensus       236 -~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~  301 (395)
T PRK08310        236 -ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAA  301 (395)
T ss_pred             -ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence             1110      001111       11222223334444556666666667799999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcH
Q 008755          349 MRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR  428 (554)
Q Consensus       349 ~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~  428 (554)
                      +++++.++|+++|+||+||++.+||+++........+......||.++|++|+|+++||+|..+|+|+|+|+++++++|.
T Consensus       302 ~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~  381 (395)
T PRK08310        302 FARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDR  381 (395)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHH
Confidence            99999999999999999999999999876433333333344568999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008755          429 FLLDTVQNMYAS  440 (554)
Q Consensus       429 ~ll~~a~~le~~  440 (554)
                      .++++++++|+.
T Consensus       382 ~lL~~a~~le~~  393 (395)
T PRK08310        382 SLLALAQTIAAA  393 (395)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999865

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-86  Score=681.03  Aligned_cols=415  Identities=26%  Similarity=0.362  Sum_probs=333.9

Q ss_pred             HHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecccccc
Q 008755           10 VLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDI   71 (554)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~   71 (554)
                      .+++.+|+++++.++     .    ++|  +.|+ +|||++...++++++|+       +++..|||+||||+|||+|+|
T Consensus         5 ~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v   83 (452)
T PRK06102          5 AKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV   83 (452)
T ss_pred             ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEecccc
Confidence            356777888766554     2    233  4565 89999988776655542       356789999999999999999


Q ss_pred             CCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCC--CCCCCCCChhHHH
Q 008755           72 EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV  149 (554)
Q Consensus        72 ~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~--~~~~GGSSgGsaa  149 (554)
                      +|++||+||+.+.+. .++.+||++|+|||++|||++||||||||+++.+|+|++||+|+||||+  +|+||||||||||
T Consensus        84 ~G~~tt~Gs~~~~~~-~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa  162 (452)
T PRK06102         84 AGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV  162 (452)
T ss_pred             CCCccCcCChhhccC-CCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence            999999999998763 2347999999999999999999999999999999999999999999996  7999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008755          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---  226 (554)
Q Consensus       150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~---  226 (554)
                      +||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+   
T Consensus       163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~  242 (452)
T PRK06102        163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR  242 (452)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987754322   


Q ss_pred             -CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHH
Q 008755          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (554)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (554)
                       +.++.||++..+.+.  ...++++.++++++++.|.  |++|++ .+        .|.+.+...    +...+..+...
T Consensus       243 ~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~  307 (452)
T PRK06102        243 RPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVER-QA--------FPAFQEILD----LIARHGWLVTA  307 (452)
T ss_pred             cCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEe-cC--------CccHHHHHH----HHHHHHHHHHH
Confidence             223456666544331  3357899999999999886  776632 11        233222111    00111122234


Q ss_pred             HHHhhhHHHHhh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCch
Q 008755          304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS  382 (554)
Q Consensus       304 e~~~~~~~~~~~-~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~  382 (554)
                      |.+..+..++.. ....+.+.++.++..+..++..+|.++++.|..+++.+.++|+ +|+||+||+|.+||+++......
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~  386 (452)
T PRK06102        308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD  386 (452)
T ss_pred             HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence            444444454443 3457899999999999999999999999999999999999999 89999999999999987532111


Q ss_pred             HHH---HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       383 ~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      ..+   ...++.||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+.+.
T Consensus       387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~  450 (452)
T PRK06102        387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR  450 (452)
T ss_pred             hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            111   12334589999999999999999986 8999999999999999999999999997663

>PRK07487 amidase; Provisional

Probab=100.00  E-value=7e-86  Score=684.21  Aligned_cols=416  Identities=22%  Similarity=0.240  Sum_probs=333.9

Q ss_pred             hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~   68 (554)
                      +++.+|+.+|+++++.++     .    ++|  +.|+.+|||++...++++++|+       +++..|||+||||+|||+
T Consensus         4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   83 (469)
T PRK07487          4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN   83 (469)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence            477889999999977654     2    233  6789999999987776655432       255679999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (554)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa  148 (554)
                      |+|+|++||+||+.+.+  +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA  161 (469)
T PRK07487         84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA  161 (469)
T ss_pred             cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence            99999999999999876  5889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccc----c-CCCCCcccccccCHHHHHHHHHHhcCCC
Q 008755          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----I-STSLDTVGWFARDPKILRHVGHVLLQLP  223 (554)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p----~-~~s~d~~G~~ar~~~dl~~v~~~l~~~~  223 (554)
                      ||||+|++|+|+|||||||||+|||||||||||||+||||+.|+++    + ..++|++|||||+++|+..+++++.+.+
T Consensus       162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d  241 (469)
T PRK07487        162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD  241 (469)
T ss_pred             HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999873    3 3478999999999999999999988654


Q ss_pred             ccc----------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhh
Q 008755          224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG  291 (554)
Q Consensus       224 ~~~----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~  291 (554)
                      ..+          ..++.||++..+.+.  ...++++.++++++++.|.  |+++++ .       ...|.+.+.     
T Consensus       242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~-----  306 (469)
T PRK07487        242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA-----  306 (469)
T ss_pred             CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence            332          124467777654432  2357899999999999886  776632 1       012333221     


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHhhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCC
Q 008755          292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (554)
Q Consensus       292 ~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~  370 (554)
                        ...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|..+++.|.++|+++|+||+||+|+
T Consensus       307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~  384 (469)
T PRK07487        307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE  384 (469)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence              11222223334444444444332 244666666666777889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHH--HHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      +||+++........+..  ....+|.++|++|+|++|||+|+.+|+|+|+|+++++++|..++++++.+|+.+
T Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~  457 (469)
T PRK07487        385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARG  457 (469)
T ss_pred             CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhh
Confidence            99998753222222211  111247789999999999999998999999999999999999999999998754

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=6.4e-86  Score=684.82  Aligned_cols=415  Identities=20%  Similarity=0.240  Sum_probs=335.3

Q ss_pred             chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecc
Q 008755            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (554)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD   67 (554)
                      ++++.+++.+|+.+++.++     .    ++|  +.|+.+|||++...++++++|+       +++..||||||||+|||
T Consensus         2 ~~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD   81 (466)
T PRK06169          2 TDLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKD   81 (466)
T ss_pred             cchhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEec
Confidence            3567778999998877654     2    233  6789999999987766555432       35567999999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (554)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs  147 (554)
                      +|+++|++||+||+.+.+. .++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+||||||||
T Consensus        82 ~~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  160 (466)
T PRK06169         82 IFLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA  160 (466)
T ss_pred             ccccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence            9999999999999998753 345799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (554)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-  226 (554)
                      |++||+|++|+|+|||||||||+||+||||||||||+||||+.|+.+++ ++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~  239 (466)
T PRK06169        161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDW  239 (466)
T ss_pred             HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999998886 89999999999999999999987643221 


Q ss_pred             ----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhh
Q 008755          227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK  288 (554)
Q Consensus       227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~  288 (554)
                                      ..++.||++..+.+  ....++++.++++++++.|.  |++|++ .+         +.+.... 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~-  306 (466)
T PRK06169        240 SALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDPV-  306 (466)
T ss_pred             cccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchHH-
Confidence                            12345666654332  12357899999999999986  776633 11         1111110 


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCC
Q 008755          289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT  368 (554)
Q Consensus       289 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~  368 (554)
                            ..+..+...+....+..+.....+.++|.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+
T Consensus       307 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~  380 (466)
T PRK06169        307 ------EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTL  380 (466)
T ss_pred             ------HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence                  11111111222222333333445678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCch--HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          369 AYPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       369 ~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      |.+||+++......  ......+..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..|+++++.+|+..
T Consensus       381 ~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~  456 (466)
T PRK06169        381 PIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL  456 (466)
T ss_pred             CCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence            99999987531111  11112334589999999999999999986 899999999999999999999999998753

>PRK07056 amidase; Provisional

Probab=100.00  E-value=1.1e-85  Score=679.90  Aligned_cols=412  Identities=26%  Similarity=0.353  Sum_probs=337.7

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hccC-CcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccC
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIKQ-DFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE   72 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~~-~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~   72 (554)
                      ++.+|+.+++.++     .    ++|  +.|+ .+|||++...++++++|+       +++..||||||||+|||+|+++
T Consensus         7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~   86 (454)
T PRK07056          7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA   86 (454)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence            6777777766544     2    233  5576 499999987766555432       3566799999999999999999


Q ss_pred             CcccCCCChhhhhcCCCC-CCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCC----CCCCCCCCCChhH
Q 008755           73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA  147 (554)
Q Consensus        73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~----~~~~~~GGSSgGs  147 (554)
                      |++||+||+.+.+  .++ .+||++|+|||++|||++||||||||+++.+|+|++||+|+|||    |++|+||||||||
T Consensus        87 G~~tt~Gs~~~~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs  164 (454)
T PRK07056         87 GQVTRAGSRVLAD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA  164 (454)
T ss_pred             CCccCCCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence            9999999999876  356 68999999999999999999999999999999999999999999    8999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC
Q 008755          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ  227 (554)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~  227 (554)
                      ||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.++.+.
T Consensus       165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~  244 (454)
T PRK07056        165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP  244 (454)
T ss_pred             HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987655432


Q ss_pred             ----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHH
Q 008755          228 ----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ  301 (554)
Q Consensus       228 ----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~  301 (554)
                          .++.||++..+.+  ....++++.++++++++.|.  |++|++ .+        .|.+.....    +. ....+.
T Consensus       245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~  308 (454)
T PRK07056        245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS  308 (454)
T ss_pred             ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence                2456777765443  12357899999999999886  776632 22        222221111    00 001122


Q ss_pred             HHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc
Q 008755          302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML  381 (554)
Q Consensus       302 ~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~  381 (554)
                      ..+.+..+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus       309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~  388 (454)
T PRK07056        309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD  388 (454)
T ss_pred             HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence            33444445556666667899999999999999999999999999999999999999999999999999999998753211


Q ss_pred             hHHHHH---HHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          382 SEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       382 ~~~~~~---~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      ...+..   .++.||.++|++|+|+||||+|..+|+|+|+|+++++++|..++++++.+|+.+
T Consensus       389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l  451 (454)
T PRK07056        389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL  451 (454)
T ss_pred             chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            222221   233479999999999999999988999999999999999999999999999765

>PRK07235 amidase; Provisional

Probab=100.00  E-value=3.3e-84  Score=672.83  Aligned_cols=400  Identities=22%  Similarity=0.275  Sum_probs=320.2

Q ss_pred             hccCCcCceeeccccCCCCCC------CCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHh
Q 008755           29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE  102 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~------~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~  102 (554)
                      .+++..|++.+...+++...|      .+++..|||+||||+|||||+++|++||+||+.+.+  +++.+||++|+||++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~  130 (502)
T PRK07235         53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD  130 (502)
T ss_pred             ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence            667888888877666554332      246778999999999999999999999999999976  588999999999999


Q ss_pred             CCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccC
Q 008755          103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP  182 (554)
Q Consensus       103 aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkP  182 (554)
                      |||||+||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+|||||||||
T Consensus       131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP  210 (502)
T PRK07235        131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP  210 (502)
T ss_pred             CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------------CCCceEEEccchhhhcC
Q 008755          183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLK  244 (554)
Q Consensus       183 T~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~------------------~~~~~l~i~~~~~~~~~  244 (554)
                      |+||||+.|++|+++++|++|||||+++|+..+++++.+.+..++                  .++.||++..+.+.. .
T Consensus       211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~  289 (502)
T PRK07235        211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-P  289 (502)
T ss_pred             CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-C
Confidence            999999999999999999999999999999999999887543221                  234566665544321 2


Q ss_pred             CChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhH-HH-HHH-HHH------------HHHHHh
Q 008755          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQ------------RYEFKN  307 (554)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~-~~-~~~-~~~------------~~e~~~  307 (554)
                      ..++++.++++++++.|.  |++|++ .++.        ........+..+ .+ ... .+.            ..+...
T Consensus       290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~p--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  360 (502)
T PRK07235        290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSIP--------LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD  360 (502)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------chhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence            247889999999999886  777633 2222        111000000000 00 000 000            001111


Q ss_pred             hhHHHHhhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchH
Q 008755          308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE  383 (554)
Q Consensus       308 ~~~~~~~~~~~~~~p~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~  383 (554)
                      .+..+...+...+.+.++.++..|.    .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~  440 (502)
T PRK07235        361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE  440 (502)
T ss_pred             HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence            1222233345678999999988775    467889999999999999999999999999999999999999976433333


Q ss_pred             HHHHH---HhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          384 DYQNR---AFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       384 ~~~~~---~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      .+..+   ++.||.+||++|+|++|||+|+.+|+|+|+|+++++++|..+++++.++|+.
T Consensus       441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~  500 (502)
T PRK07235        441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS  500 (502)
T ss_pred             HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            33322   3347999999999999999999999999999999999999999999999864

>PRK07486 amidase; Provisional

Probab=100.00  E-value=1.4e-84  Score=678.00  Aligned_cols=419  Identities=22%  Similarity=0.235  Sum_probs=331.7

Q ss_pred             ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccC-CCCCCC-------CCCCCCCCCCceee
Q 008755            4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLL-PPPQPL-------PPKAPHPLTGLSFA   64 (554)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~-~~~~~~-------~~~~~~pL~Gvp~~   64 (554)
                      |--+++.+++.+|+.+++.++     .    ++|  +.|+.+|||++...++ ++++|+       ++...||||||||+
T Consensus         5 ~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~   84 (484)
T PRK07486          5 PPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQA   84 (484)
T ss_pred             ChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEE
Confidence            334667778999999977654     2    233  6789999999975532 233321       35667999999999


Q ss_pred             eccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008755           65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS  144 (554)
Q Consensus        65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS  144 (554)
                      |||+|+++|++||+||+.+.+  +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||
T Consensus        85 vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS  162 (484)
T PRK07486         85 PKDLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSS  162 (484)
T ss_pred             EecccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence            999999999999999999876  488999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCcc-ccCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008755          145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLP  223 (554)
Q Consensus       145 gGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~-p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~  223 (554)
                      |||||+||+|++++|+|||||||||+||+||||||||||+||||+.|.+ ++++++|++|||||+++|+..+++++.+.+
T Consensus       163 gGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d  242 (484)
T PRK07486        163 GGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYD  242 (484)
T ss_pred             HHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999998755 789999999999999999999999987654


Q ss_pred             ccc-----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChh
Q 008755          224 FAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK  284 (554)
Q Consensus       224 ~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~  284 (554)
                      ..+                 ..++.||++..+++. ....++++.++++++++.|.  |++|++ ..+.  +     ...
T Consensus       243 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~--~-----~~~  313 (484)
T PRK07486        243 PRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-ALPA--F-----PPE  313 (484)
T ss_pred             CCCCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--c-----chH
Confidence            322                 123457776544331 11357889999999999886  776632 1110  0     011


Q ss_pred             hHhhhhhhHHHHHHHHHHHHHHhhhHHHHh--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q 008755          285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI  362 (554)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~  362 (554)
                      .       ..+.+..+...+........+.  .....+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+
T Consensus       314 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~  386 (484)
T PRK07486        314 R-------LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDF  386 (484)
T ss_pred             H-------HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            0       0111111111111111122221  134568899999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCC-----CchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHH
Q 008755          363 LVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN  436 (554)
Q Consensus       363 ll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~  436 (554)
                      ||+||+|.+||+++...     .........+..+|.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.
T Consensus       387 ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~  466 (484)
T PRK07486        387 LALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHA  466 (484)
T ss_pred             EEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence            99999999999876421     11111122334478899999999999999986 8999999999999999999999999


Q ss_pred             HHHH
Q 008755          437 MYAS  440 (554)
Q Consensus       437 le~~  440 (554)
                      +|+.
T Consensus       467 le~~  470 (484)
T PRK07486        467 YEQA  470 (484)
T ss_pred             HHhc
Confidence            9875

>PRK06170 amidase; Provisional

Probab=100.00  E-value=1.5e-84  Score=679.52  Aligned_cols=418  Identities=21%  Similarity=0.269  Sum_probs=331.9

Q ss_pred             ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeee
Q 008755            4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAV   65 (554)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~v   65 (554)
                      -+.++..+++.+|+++++.++     .    ++|  +.|+.+|||++...++++++|+       ++ ..||||||||+|
T Consensus         5 ~~~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~~gpL~GvPv~V   83 (490)
T PRK06170          5 AADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-ERGPLLGIPVTV   83 (490)
T ss_pred             ccchhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-CCCCcCCceEEE
Confidence            345778889999999977665     2    233  6799999999988776655542       23 469999999999


Q ss_pred             ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008755           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS  145 (554)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSg  145 (554)
                      ||+|+|+|++||+||+.+.+  .++.+|+++|+|||++|||++||||||||+++.++.|++||+|+||||++|+||||||
T Consensus        84 KD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSg  161 (490)
T PRK06170         84 KESFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSG  161 (490)
T ss_pred             ecccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChH
Confidence            99999999999999999886  4788999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccc-----c--CCCCCcccccccCHHHHHHHHHH
Q 008755          146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHV  218 (554)
Q Consensus       146 GsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p-----~--~~s~d~~G~~ar~~~dl~~v~~~  218 (554)
                      ||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|     +  +.++|++|||||+++|+..++++
T Consensus       162 GsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~  241 (490)
T PRK06170        162 GSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDV  241 (490)
T ss_pred             HHHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988     4  34689999999999999999999


Q ss_pred             hcCCCccc---------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCC
Q 008755          219 LLQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP  281 (554)
Q Consensus       219 l~~~~~~~---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p  281 (554)
                      +.+.+..+               ..++.||++..+.+.  ...++++.++++++++.|.  |++|++. +      ...|
T Consensus       242 l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~------~~~~  312 (490)
T PRK06170        242 MAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVVRH-S------PLLP  312 (490)
T ss_pred             HhCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEc-C------CCCC
Confidence            88754322               113456776654331  2357899999999999986  7776431 1      0112


Q ss_pred             ChhhHhhhhhhHHHHHHHHHHHHHHhhh-HHHHhh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 008755          282 SLKGFHKTNGELKNVMRLIQRYEFKNNH-NEWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAIS  354 (554)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~------~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~  354 (554)
                      .+....       ..+..+...+....+ ..+...      ....+.+.++.++..+..++..+|.++++.|..+++.|.
T Consensus       313 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~  385 (490)
T PRK06170        313 DLAESA-------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWR  385 (490)
T ss_pred             chHHHH-------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence            222111       111111111111111 011111      123466777777888888999999999999999999999


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCCCCCCc------h----HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEec
Q 008755          355 SLLKDDGILVTPTTAYPPPKLGGKEML------S----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIAR  423 (554)
Q Consensus       355 ~~~~~~D~ll~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~  423 (554)
                      ++|+++|+||+||+|.+||+++.....      .    ..+. ..+.||.++|++|+|+||||+|+. +|+|+|+|++++
T Consensus       386 ~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~  464 (490)
T PRK06170        386 RFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGP  464 (490)
T ss_pred             HHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCceeEEEecC
Confidence            999999999999999999998653110      0    0111 223589999999999999999986 899999999999


Q ss_pred             cCCcHHHHHHHHHHHHHH
Q 008755          424 HGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       424 ~~~d~~ll~~a~~le~~l  441 (554)
                      +++|..|+++++.+|+.+
T Consensus       465 ~~~D~~LL~~a~~lE~~~  482 (490)
T PRK06170        465 ALEDRTPLRLAELLEEEF  482 (490)
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999998754

>PRK07042 amidase; Provisional

Probab=100.00  E-value=1.3e-84  Score=674.67  Aligned_cols=412  Identities=17%  Similarity=0.143  Sum_probs=331.6

Q ss_pred             hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~   68 (554)
                      +++.+++.+|+.+++.++     .    ++|  +.|+.+|||++...+.++++|+       +++..||||||||+|||+
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   82 (464)
T PRK07042          3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN   82 (464)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence            466778899988876654     2    233  6799999999987776655442       356789999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (554)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa  148 (554)
                      |+|+|++||+||+.+.+  +++.+||++|+|||++|||++||||||||+++..|+|++||+|+||||++|+|||||||||
T Consensus        83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (464)
T PRK07042         83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG  160 (464)
T ss_pred             cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence            99999999999999865  5788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC-
Q 008755          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-  227 (554)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~-  227 (554)
                      |+||+|++++|+|||||||||+||+||||||||||+||||..|..    +.|++|||||+++|+..+++++.+.+..+. 
T Consensus       161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~  236 (464)
T PRK07042        161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT  236 (464)
T ss_pred             HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999998843    358999999999999999999876543221 


Q ss_pred             ---------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhh
Q 008755          228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN  290 (554)
Q Consensus       228 ---------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~  290 (554)
                                     .++.||++..+.+. ....++++.++++++++.|.  |+++++. +        .+....+    
T Consensus       237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~--------~~~~~~~----  302 (464)
T PRK07042        237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEPV-P--------PFLTRAM----  302 (464)
T ss_pred             ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEe-C--------CchhHHH----
Confidence                           13456776544321 12357889999999999886  7776431 1        1111111    


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCC
Q 008755          291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (554)
Q Consensus       291 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~  370 (554)
                         .+.+..+...+....+..+.....+.+.|.++.++..+..++..+|.+++..|..+++.|.++|+++|+||+||+|.
T Consensus       303 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~  379 (464)
T PRK07042        303 ---LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV  379 (464)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence               11111111123333344444555667889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc-hHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          371 PPPKLGGKEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       371 ~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      +||+++..... ........+.||.+||++|+|+||||+|+. +|+|+|+|+++++++|..|+++++.+|+..
T Consensus       380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~  452 (464)
T PRK07042        380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR  452 (464)
T ss_pred             CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence            99988642211 111111223589999999999999999986 799999999999999999999999998764

>PRK12470 amidase; Provisional

Probab=100.00  E-value=2e-84  Score=671.23  Aligned_cols=412  Identities=22%  Similarity=0.275  Sum_probs=326.2

Q ss_pred             hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccc
Q 008755            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~   68 (554)
                      +++.+++.+|+.+++.++     .    ++|  +.|+.+|||+....++++++|+       ++... ||+||||+|||+
T Consensus         5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~   83 (462)
T PRK12470          5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD   83 (462)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence            467788999999976654     2    233  6789999999987776655442       24445 999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHH
Q 008755           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (554)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsa  148 (554)
                      |+++|++||+||+.+ .  +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (462)
T PRK12470         84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA  160 (462)
T ss_pred             cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence            999999999999985 3  4788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008755          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (554)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--  226 (554)
                      +|||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|+|+..+++++.+.+..+  
T Consensus       161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~  240 (462)
T PRK12470        161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE  240 (462)
T ss_pred             HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887543211  


Q ss_pred             -------CCCCceEEEccchhh-hcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHH
Q 008755          227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (554)
Q Consensus       227 -------~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~  296 (554)
                             ..++.||++..+.+. .....++++.++++++++.|.  |++|++ ..         |.+......  .+...
T Consensus       241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~  308 (462)
T PRK12470        241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR  308 (462)
T ss_pred             hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence                   124457776544321 112357889999999999986  776632 11         111100000  00000


Q ss_pred             HHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCC
Q 008755          297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG  376 (554)
Q Consensus       297 ~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~  376 (554)
                      +     ....... .....+...+.+.++.++..|..++..+|.....++..+++.|.++|+++|+||+||+|.+||+++
T Consensus       309 ~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~  382 (462)
T PRK12470        309 F-----FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG  382 (462)
T ss_pred             H-----HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence            0     0000000 011123456889999999999999998888555556699999999999999999999999999987


Q ss_pred             CCCCc--hHHH--HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       377 ~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      .....  ...+  ...+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|++++..+|+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            53211  1111  12334589999999999999999987 79999999999999999999999999865

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=6.3e-84  Score=670.92  Aligned_cols=413  Identities=25%  Similarity=0.343  Sum_probs=329.0

Q ss_pred             chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeecc
Q 008755            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (554)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD   67 (554)
                      .+++.+++.+|+.+++.++     .    ++|  +.+ .+|||++...++++++|+       .+...+ |+||||+|||
T Consensus         6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD   83 (472)
T PRK07488          6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKD   83 (472)
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEc
Confidence            4678889999999977655     2    233  334 699999988776655442       244456 9999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (554)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs  147 (554)
                      +|+|+|++||+||+.+.+  +++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++++||||||||
T Consensus        84 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  161 (472)
T PRK07488         84 NINTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGT  161 (472)
T ss_pred             ccccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHH
Confidence            999999999999999886  478899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (554)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-  226 (554)
                      ||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+ 
T Consensus       162 AaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~  241 (472)
T PRK07488        162 AAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPA  241 (472)
T ss_pred             HHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988765432 


Q ss_pred             --CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHH
Q 008755          227 --QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQR  302 (554)
Q Consensus       227 --~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~  302 (554)
                        +.++.||++..+.+  ....++++.++++++++.|.  |++|++ .++        |.+.++...      ....+..
T Consensus       242 ~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~------~~~~~~~  304 (472)
T PRK07488        242 PVALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LDL--------PGLHELNEA------VGFPIAL  304 (472)
T ss_pred             CcCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eCC--------cCHHHHhhh------HHHHHHH
Confidence              23556777765432  22357889999999999886  777643 222        222211000      0111222


Q ss_pred             HHHHhhhHHHHhhhC----------CCCCHHHHHHHHH---hhcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCcEEEEc
Q 008755          303 YEFKNNHNEWIESVK----------PALDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTP  366 (554)
Q Consensus       303 ~e~~~~~~~~~~~~~----------~~~~p~~~~~~~~---g~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~D~ll~P  366 (554)
                      ++.+..+..++....          ...+|.++.+++.   +..++..+|.++++. |..+++.|.++|+  ++|+||+|
T Consensus       305 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~P  384 (472)
T PRK07488        305 YEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFP  384 (472)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence            233333333332211          1225777666543   346789999999888 9999999999998  78999999


Q ss_pred             CCCCCCCCCCCCCC------chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755          367 TTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (554)
Q Consensus       367 t~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~  439 (554)
                      |+|.+||+++....      ....+ ..+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|++++.++|+
T Consensus       385 t~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~  463 (472)
T PRK07488        385 TTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALER  463 (472)
T ss_pred             CCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999975311      11222 2344578999999999999999986 7999999999999999999999999986


Q ss_pred             H
Q 008755          440 S  440 (554)
Q Consensus       440 ~  440 (554)
                      .
T Consensus       464 ~  464 (472)
T PRK07488        464 V  464 (472)
T ss_pred             h
Confidence            5

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=2.8e-84  Score=673.00  Aligned_cols=395  Identities=26%  Similarity=0.344  Sum_probs=311.6

Q ss_pred             hccCCcCceeeccccCCCCCCCCCC--CCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCe
Q 008755           29 NIKQDFGAFIEKLQLLPPPQPLPPK--APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT  106 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai  106 (554)
                      +.|+.+|||++...++++++|++-+  ..||||||||+|||+|+++|++||+||+.+++  .++.+||++|+|||++|||
T Consensus        25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi  102 (460)
T TIGR00132        25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL  102 (460)
T ss_pred             HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence            6789999999987766655543211  12899999999999999999999999999986  4788999999999999999


Q ss_pred             eeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCc
Q 008755          107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA  186 (554)
Q Consensus       107 ~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~  186 (554)
                      ++||||||||+++.+++|++||+|+||||++|+|||||||||++||+|++|+|+|||||||||+||+||||||||||+||
T Consensus       103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~  182 (460)
T TIGR00132       103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR  182 (460)
T ss_pred             EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcCCChHH
Q 008755          187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR  249 (554)
Q Consensus       187 v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~  249 (554)
                      ||+.|++|+++++|++|||+|+++|+..+++++.+.+..+                 ..++.||++..+.+.   ..+++
T Consensus       183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~  259 (460)
T TIGR00132       183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE  259 (460)
T ss_pred             CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence            9999999999999999999999999999999988654322                 123456766554332   24788


Q ss_pred             HHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH---------HHhhhHHHHhh-
Q 008755          250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNEWIES-  315 (554)
Q Consensus       250 ~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e---------~~~~~~~~~~~-  315 (554)
                      +.++++++++.|.  |++|++ .++        |.+.........  ..+....+..+.         ....+.+++.. 
T Consensus       260 v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (460)
T TIGR00132       260 VQEKFENALEVLEELGAEIVE-VSF--------PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT  330 (460)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence            9999999999886  777643 222        222211110000  001111011110         00112233332 


Q ss_pred             hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc-hHHHHHHH
Q 008755          316 VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA  389 (554)
Q Consensus       316 ~~~~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~-~~~~~~~~  389 (554)
                      ....+++.++.++..+...+.     .+|.++++.|..+++.+.++|+++|+||+||+|.+||+++..... ...+..  
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~--  408 (460)
T TIGR00132       331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLS--  408 (460)
T ss_pred             chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcc--
Confidence            234577888888876654443     448899999999999999999999999999999999999753221 112211  


Q ss_pred             hhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755          390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (554)
Q Consensus       390 ~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~  439 (554)
                      ..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+
T Consensus       409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence            1278999999999999999987 8999999999999999999999999875

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK06061 amidase; Provisional

Probab=100.00  E-value=1.1e-83  Score=669.49  Aligned_cols=415  Identities=23%  Similarity=0.271  Sum_probs=328.8

Q ss_pred             CccchhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceee
Q 008755            3 SQSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFA   64 (554)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~   64 (554)
                      |-+-|+--+++.+|+.+++.++     .    ++|  +.|+.+|||++...++++++|+       ++. .+|||||||+
T Consensus        10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~~pL~GvPv~   88 (483)
T PRK06061         10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD-RLPLLGVPIA   88 (483)
T ss_pred             cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC-CCCcCCCeEE
Confidence            4455677788889988877654     2    233  6789999999988776655443       122 3599999999


Q ss_pred             eccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008755           65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS  144 (554)
Q Consensus        65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS  144 (554)
                      |||+|+++|++||+||+..   ..++.+||++|+|||++|||++||||||||+++.+++|++||+|+||||++|+|||||
T Consensus        89 vKD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSS  165 (483)
T PRK06061         89 VKDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSS  165 (483)
T ss_pred             EEcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCCh
Confidence            9999999999999999842   2345799999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCc
Q 008755          145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPF  224 (554)
Q Consensus       145 gGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~  224 (554)
                      ||||++||+|++|+|+|||||||||+||+||||||||||+||||+.|+.+.++++|++|||||+++|+..+++++.+.+.
T Consensus       166 gGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~  245 (483)
T PRK06061        166 GGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP  245 (483)
T ss_pred             HHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999876532


Q ss_pred             cc---------------CCCCceEEEccchhh--hcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhh
Q 008755          225 AA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG  285 (554)
Q Consensus       225 ~~---------------~~~~~~l~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~  285 (554)
                      .+               ..++.||++..+...  .....++++.++++++++.|.  |++|++ ..         +.+..
T Consensus       246 ~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~  315 (483)
T PRK06061        246 GDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGL  315 (483)
T ss_pred             CCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------Cchhh
Confidence            21               113346666443211  112357899999999999986  776633 11         11110


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhHHHHhh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q 008755          286 FHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL  363 (554)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~l  363 (554)
                      ...    .....      +....+..+...  ....+.|.++.+++.+..++..+|.++++.|..+++.|.++|+++|+|
T Consensus       316 ~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~l  385 (483)
T PRK06061        316 RLG----LNFLP------RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVV  385 (483)
T ss_pred             HHH----HHHHH------HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            000    00000      000111222222  234678999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCch----HHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755          364 VTPTTAYPPPKLGGKEMLS----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (554)
Q Consensus       364 l~Pt~~~~ap~~~~~~~~~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le  438 (554)
                      |+||+|.+||+++......    ......+..||.++|++|+|+||||+|.. +|+|+|+|+++++++|..++++++.+|
T Consensus       386 l~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le  465 (483)
T PRK06061        386 LAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLE  465 (483)
T ss_pred             EcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHH
Confidence            9999999999987532110    00111223489999999999999999986 799999999999999999999999998


Q ss_pred             HHH
Q 008755          439 ASL  441 (554)
Q Consensus       439 ~~l  441 (554)
                      +..
T Consensus       466 ~~~  468 (483)
T PRK06061        466 AVS  468 (483)
T ss_pred             hhc
Confidence            763

>PRK07869 amidase; Provisional

Probab=100.00  E-value=2e-83  Score=667.25  Aligned_cols=415  Identities=18%  Similarity=0.249  Sum_probs=317.8

Q ss_pred             chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCC-CCCCCCCCCceeeeccccccCC
Q 008755            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG   73 (554)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~pL~Gvp~~vKD~~~~~g   73 (554)
                      .|+..+|+.+|+.+++.++     .    ++|  +.|+.+|||++...+++++++++ +...|||+||||+|||+|+++|
T Consensus        10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G   89 (468)
T PRK07869         10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG   89 (468)
T ss_pred             hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence            5677889999999977655     2    233  67999999999887766555432 3456999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 008755           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (554)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaa  153 (554)
                      ++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus        90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa  167 (468)
T PRK07869         90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA  167 (468)
T ss_pred             cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence            999999999876  478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCcccccCCCCccccCCcccc-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008755          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------  226 (554)
Q Consensus       154 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~-~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~------  226 (554)
                      |++|+|+|||||||||+||+||||||||||+||||+.|+.|. ..++|++|||||+++|+..+++++.+.+..+      
T Consensus       168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~  247 (468)
T PRK07869        168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG  247 (468)
T ss_pred             CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence            999999999999999999999999999999999999998774 3478999999999999999999887543211      


Q ss_pred             -----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHH
Q 008755          227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL  299 (554)
Q Consensus       227 -----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~  299 (554)
                           ..++.||++..+.+. ....++++.++++++++.|.  |++|++ .++        |....+...   +. .+..
T Consensus       248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~---~~-~~~~  313 (468)
T PRK07869        248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VDL--------PVPASFVDD---FL-LYWG  313 (468)
T ss_pred             hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHH---HH-HHHH
Confidence                 123457776544321 12357899999999999986  776633 111        211111100   00 0000


Q ss_pred             HHHHHHHhhhHHHHhhhCCCCCHHHHH-----HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCC
Q 008755          300 IQRYEFKNNHNEWIESVKPALDPDISA-----EIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  374 (554)
Q Consensus       300 ~~~~e~~~~~~~~~~~~~~~~~p~~~~-----~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~  374 (554)
                      +...+.......   .....+.+....     ....+.. +..++.++.+.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus       314 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~  389 (468)
T PRK07869        314 FLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE  389 (468)
T ss_pred             HHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence            001111010000   011122333222     2222222 4556788888899999999999999999999999999999


Q ss_pred             CCCCCCc--hHHHH---HHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          375 LGGKEML--SEDYQ---NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       375 ~~~~~~~--~~~~~---~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      ++.....  .....   ..+..||.++|++|+|++|||+|+. +|+|+|+|+++++++|..++++++.+|+.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  461 (468)
T PRK07869        390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA  461 (468)
T ss_pred             CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence            9753211  11111   1333579999999999999999986 89999999999999999999999999865

>PRK06529 amidase; Provisional

Probab=100.00  E-value=3.1e-83  Score=667.53  Aligned_cols=411  Identities=18%  Similarity=0.231  Sum_probs=320.1

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCC-CCCCCCCceeeeccc-cccCCcccCC
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDL-FDIEGYVTGF   78 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~pL~Gvp~~vKD~-~~~~g~~tt~   78 (554)
                      ++++|+.+++.++     .    ++|  +.|+.+|||++...++++++|++-+ ..+|||||||+|||+ |+|+|++||+
T Consensus         5 ~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~   84 (482)
T PRK06529          5 DATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTS   84 (482)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCc
Confidence            5667777755443     2    233  6789999999987776655544322 235999999999998 7999999999


Q ss_pred             CChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcc
Q 008755           79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF  158 (554)
Q Consensus        79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~  158 (554)
                      ||+.+++  +++.+||++|+|||+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+
T Consensus        85 Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~  162 (482)
T PRK06529         85 GSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVAL  162 (482)
T ss_pred             chHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCce
Confidence            9999886  48899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcc-cccccCHHHHHHHHHHhcCCCcccC----------
Q 008755          159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAAQ----------  227 (554)
Q Consensus       159 a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~-G~~ar~~~dl~~v~~~l~~~~~~~~----------  227 (554)
                      |+|||||||||+||+||||||||||+||||..+..+.+.++|++ |||+|+++|+..+++++.+.+..++          
T Consensus       163 aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~  242 (482)
T PRK06529        163 AAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKES  242 (482)
T ss_pred             eeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccch
Confidence            99999999999999999999999999999987765556666766 7999999999999998876432110          


Q ss_pred             -----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCC-ChhhHhhhhhhHHHHHHH
Q 008755          228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMRL  299 (554)
Q Consensus       228 -----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p-~~~~~~~~~~~~~~~~~~  299 (554)
                           .++.||++..+.+. ....++++.++++++++.|.  |++|++...        .| .+....       ..+..
T Consensus       243 ~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev~~--------~p~~~~~~~-------~~~~~  306 (482)
T PRK06529        243 LFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVELEE--------FPLDMTEVM-------RSYYI  306 (482)
T ss_pred             hccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEcCC--------CCCCHHHHH-------HHHHH
Confidence                 13456666544321 12357899999999999986  777643211        12 121111       11111


Q ss_pred             HHHHHHHhhhHHHHhhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCC
Q 008755          300 IQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  374 (554)
Q Consensus       300 ~~~~e~~~~~~~~~~~~-----~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~  374 (554)
                      +...+....+..+....     ...+.+.++.++..|..++..+|.++++.|..+++.|.++|+++|+||+||+|++||+
T Consensus       307 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~  386 (482)
T PRK06529        307 MNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPK  386 (482)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence            22222222222222111     2246777777777888899999999999999999999999999999999999999999


Q ss_pred             CCCCCCch----------------------HHHH--HHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHH
Q 008755          375 LGGKEMLS----------------------EDYQ--NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRF  429 (554)
Q Consensus       375 ~~~~~~~~----------------------~~~~--~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~  429 (554)
                      ++......                      ..+.  ..+..||.++|++|+|+||||+|.. +|+|+|+|+++++++|..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~  466 (482)
T PRK06529        387 HGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDL  466 (482)
T ss_pred             CCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHH
Confidence            86521110                      0111  1233489999999999999999986 799999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008755          430 LLDTVQNMYAS  440 (554)
Q Consensus       430 ll~~a~~le~~  440 (554)
                      ++++++.+|+.
T Consensus       467 lL~~a~~le~~  477 (482)
T PRK06529        467 LLGIAEQFEAA  477 (482)
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=2e-83  Score=666.38  Aligned_cols=394  Identities=24%  Similarity=0.339  Sum_probs=311.0

Q ss_pred             hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHH
Q 008755           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV  101 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~  101 (554)
                      +.|+.+|||++..+++++++|+       .+. .||||||||+|||+|+|+|++||+||..+.+  .++.+|+++|+|||
T Consensus        21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr   97 (459)
T PRK00012         21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK   97 (459)
T ss_pred             HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence            7799999999988766655443       234 7999999999999999999999999999886  47889999999999


Q ss_pred             hCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008755          102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR  181 (554)
Q Consensus       102 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Glk  181 (554)
                      ++|||++||||||||+++.+++|++||+|+||||++|+|||||||||++||+|++|+|+|||||||||+||+||||||||
T Consensus        98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K  177 (459)
T PRK00012         98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK  177 (459)
T ss_pred             HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcC
Q 008755          182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK  244 (554)
Q Consensus       182 PT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~  244 (554)
                      ||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+                 ..++.||++..+.+  ..
T Consensus       178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~  255 (459)
T PRK00012        178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE  255 (459)
T ss_pred             CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence            999999999999999999999999999999999999987654221                 12345666655443  12


Q ss_pred             CChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH---------HHhhhHH
Q 008755          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNE  311 (554)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e---------~~~~~~~  311 (554)
                      ..++++.++++++++.|.  |++|++ ..+        |.+.+....+..  ..+....+..+.         ....+.+
T Consensus       256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (459)
T PRK00012        256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE  326 (459)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence            347889999999999886  777643 222        222111100000  000100010000         0011222


Q ss_pred             HHhh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC-chHH
Q 008755          312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM-LSED  384 (554)
Q Consensus       312 ~~~~-~~~~~~p~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~-~~~~  384 (554)
                      ++.. ....+++.++.++..+..++     ..+|.++.+.|..+++.|.++|+++|+||+||+|.+||+++.... ....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~  406 (459)
T PRK00012        327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM  406 (459)
T ss_pred             HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence            2222 22357888888888765443     345888999999999999999999999999999999999875321 1112


Q ss_pred             HHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755          385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (554)
Q Consensus       385 ~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le  438 (554)
                      +..  ..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..|+++++.+|
T Consensus       407 ~~~--~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        407 YLS--DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             hcc--ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence            221  2379999999999999999987 689999999999999999999998874

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=5.3e-83  Score=673.48  Aligned_cols=411  Identities=27%  Similarity=0.321  Sum_probs=327.9

Q ss_pred             HhhhhhhhhHHHHH-----H----Hhh-hccCCcCceeeccc-cCCCCCCCC----CCCCCCCCCceeeeccccccCCcc
Q 008755           11 LLGLGLAGILLMTK-----K----LKK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYV   75 (554)
Q Consensus        11 ~~~~~~~~~~~~~~-----~----~~~-~~~~~~~a~~~~~~-~~~~~~~~~----~~~~~pL~Gvp~~vKD~~~~~g~~   75 (554)
                      +++.+|+.+++.++     .    ++| +.++.+|+|++... +++++++++    ....+||+||||+|||||||+|++
T Consensus         7 ~t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~p   86 (600)
T PRK08186          7 LTLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLP   86 (600)
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcc
Confidence            36777777765543     2    233 22678999998765 333333321    124799999999999999999999


Q ss_pred             cCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCC
Q 008755           76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL  155 (554)
Q Consensus        76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~  155 (554)
                      ||+||+.+.   +++.+||++|+|||++|||++||||||||+++..+.|+.||+|+||||++|+|||||||||++||+|+
T Consensus        87 TTaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~  163 (600)
T PRK08186         87 TTAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGL  163 (600)
T ss_pred             cCcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC
Confidence            999999985   36789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--------
Q 008755          156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--------  227 (554)
Q Consensus       156 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~--------  227 (554)
                      +++|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.+.+..+.        
T Consensus       164 ~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~  243 (600)
T PRK08186        164 VSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPAD  243 (600)
T ss_pred             cceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999876543221        


Q ss_pred             -----CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHH
Q 008755          228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI  300 (554)
Q Consensus       228 -----~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~  300 (554)
                           .++.||++..+.... ...++++.++++++++.|.  |+++++ ++        .|.+.+.      ....+...
T Consensus       244 ~~~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~  307 (600)
T PRK08186        244 APAALPAGPRVGVPRAAQLE-FFGDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGP  307 (600)
T ss_pred             cccccCCCCEEEEEcchhcc-ccCCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHH
Confidence                 123566665321111 1136789999999999886  776632 22        2222111      01111222


Q ss_pred             HHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC
Q 008755          301 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM  380 (554)
Q Consensus       301 ~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~  380 (554)
                      +..|.+..+.+++..+...+.|.++.++..+..++..+|.+++..|..+++.+.++|+++|+||+||+|.+++ +.....
T Consensus       308 ~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~  386 (600)
T PRK08186        308 WVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAA  386 (600)
T ss_pred             HHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcC
Confidence            2234444556666666678899999999999999999999999999999999999999999999999999875 333222


Q ss_pred             chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      +.......+..||.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.+|+..
T Consensus       387 ~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  448 (600)
T PRK08186        387 DPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL  448 (600)
T ss_pred             CchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            2222223333589999999999999999976 899999999999999999999999998764

>PRK07139 amidase; Provisional

Probab=100.00  E-value=5.2e-82  Score=648.27  Aligned_cols=395  Identities=23%  Similarity=0.319  Sum_probs=309.9

Q ss_pred             HHHhhhccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhC
Q 008755           24 KKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEG  103 (554)
Q Consensus        24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~a  103 (554)
                      +.+++..+.++|++++...+..       ...|||+||||+|||+|+++|++||+||+.+.+  +++.+||++|+|||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~A   80 (439)
T PRK07139         10 KALEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINA   80 (439)
T ss_pred             HHHHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHC
Confidence            3456677788899988765543       357999999999999999999999999999876  4788999999999999


Q ss_pred             CCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCC
Q 008755          104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPS  183 (554)
Q Consensus       104 Gai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT  183 (554)
                      |||++||||||||+++.++.|++||+|+||||++|+||||||||||+||+| +|+|+|||||||||+|||||||||||||
T Consensus        81 GAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT  159 (439)
T PRK07139         81 GAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPS  159 (439)
T ss_pred             CCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCC
Confidence            999999999999999999999999999999999999999999999999997 6999999999999999999999999999


Q ss_pred             CCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------CCCceEEEccchhhhcCCChHHHH
Q 008755          184 YGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVV  251 (554)
Q Consensus       184 ~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~------------~~~~~l~i~~~~~~~~~~~~~~~~  251 (554)
                      +||||+.|++|+++++|++|||||+++|+..+++++.+.+..+.            .++.||++.. .+   ...++++.
T Consensus       160 ~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~-~~---~~~~~~v~  235 (439)
T PRK07139        160 YGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLD-CF---KELEEYVA  235 (439)
T ss_pred             CCCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEEC-cc---ccCCHHHH
Confidence            99999999999999999999999999999999999887543321            2445666642 11   22478899


Q ss_pred             HHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh--HHHHHHHHHHHH--------HHhhhHHHHh-hhCC
Q 008755          252 QVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE--------FKNNHNEWIE-SVKP  318 (554)
Q Consensus       252 ~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~--~~~~~~~~~~~e--------~~~~~~~~~~-~~~~  318 (554)
                      ++++++++.|.  |++|++ ..+...      .+.........  ..+....+..+.        ....+..++. ....
T Consensus       236 ~a~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (439)
T PRK07139        236 KKYKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSE  308 (439)
T ss_pred             HHHHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchh
Confidence            99999998886  777633 222110      01100000000  000100010000        0001122322 2334


Q ss_pred             CCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhh
Q 008755          319 ALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL  393 (554)
Q Consensus       319 ~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t  393 (554)
                      .+++.++.++..+..++.     .+|.++++.|..+++.|.++|+++|+||+||+|++||+++........+. .+  +|
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t  385 (439)
T PRK07139        309 GFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--IL  385 (439)
T ss_pred             ccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--cc
Confidence            588999999988876654     34889999999999999999999999999999999999875311122222 11  36


Q ss_pred             hcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       394 ~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      .++|++|+|+||||+|..+|+|+|+|+++++++|..|+++++++|+.++
T Consensus       386 ~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        386 TISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             cCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            7899999999999999668999999999999999999999999997764

>PRK08137 amidase; Provisional

Probab=100.00  E-value=2e-82  Score=663.88  Aligned_cols=404  Identities=23%  Similarity=0.259  Sum_probs=318.1

Q ss_pred             hHHHhhhhhhhhHHHHH-----H----Hhh--h---ccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeec
Q 008755            8 LWVLLGLGLAGILLMTK-----K----LKK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS   66 (554)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-----~----~~~--~---~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vK   66 (554)
                      ...+|+.+|++++..++     .    ++|  +   .||.+|||++...+ ++++|+       ++...|||+||||+||
T Consensus         3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK   81 (497)
T PRK08137          3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK   81 (497)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence            45678889988876554     2    233  2   27899999997654 444432       3556799999999999


Q ss_pred             cccccC-CcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCcccccccc-----CCCCCCCCCCCCCCCCCCCC
Q 008755           67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP  140 (554)
Q Consensus        67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~-----~~~~~~~g~~~NP~~~~~~~  140 (554)
                      |+|+|+ |++||+||..+++  .++.+||++|+|||++|||++||||||||+++.     +++|++||+|+||||++|+|
T Consensus        82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~  159 (497)
T PRK08137         82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP  159 (497)
T ss_pred             cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999 9999999999876  478899999999999999999999999999644     45899999999999999999


Q ss_pred             CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (554)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~  220 (554)
                      |||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.
T Consensus       160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~  239 (497)
T PRK08137        160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA  239 (497)
T ss_pred             CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc--------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccc
Q 008755          221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (554)
Q Consensus       221 ~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~  278 (554)
                      +.+..+                    ..++.||++..+++    ..++++.++++++++.|.  |+++++ .++      
T Consensus       240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------  308 (497)
T PRK08137        240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------  308 (497)
T ss_pred             CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence            643221                    12345677655432    257889999999999886  777643 112      


Q ss_pred             cCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHH----------------h-------hhCCCCCHHHHHHHHHhhcCC
Q 008755          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------E-------SVKPALDPDISAEIGEMLEIS  335 (554)
Q Consensus       279 ~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------~-------~~~~~~~p~~~~~~~~g~~~s  335 (554)
                        |.+..+..       .+..+...|....+..++                .       .....+++.++.++..+..++
T Consensus       309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (497)
T PRK08137        309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD  379 (497)
T ss_pred             --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence              21111110       011111112111111111                1       112467888999998888899


Q ss_pred             HHHHHHHHHHHHHH--HHHHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC
Q 008755          336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  411 (554)
Q Consensus       336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~  411 (554)
                      ..+|.++++.+..+  ++.|.++|+  ++|+||+||++ ++|+++....  ..+.   ..+|.++|++|+|++|||+|+.
T Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~  453 (497)
T PRK08137        380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV  453 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence            99999998755544  479999997  68999999999 8888864211  1111   1367899999999999999998


Q ss_pred             CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          412 DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       412 ~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      +|+|+|+|+++++++|..|++++.++|+.
T Consensus       454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~  482 (497)
T PRK08137        454 QGLPVGLSFIGAAWSEARLLELGYAYEQA  482 (497)
T ss_pred             CCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=8.7e-82  Score=657.12  Aligned_cols=367  Identities=28%  Similarity=0.351  Sum_probs=303.1

Q ss_pred             CCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCC
Q 008755           55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA  134 (554)
Q Consensus        55 ~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~  134 (554)
                      .+||+||||+|||||||+|++||+||+.+.   +++.+||++|+|||++|||++||||||||+++..+.|++||+|+|||
T Consensus        29 ~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP~  105 (561)
T TIGR02713        29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAF  105 (561)
T ss_pred             CCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCCC
Confidence            589999999999999999999999999985   37889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHH
Q 008755          135 APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH  214 (554)
Q Consensus       135 ~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~  214 (554)
                      |++|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..
T Consensus       106 d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~  185 (561)
T TIGR02713       106 DPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQ  185 (561)
T ss_pred             CCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccC-------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCccccccc
Q 008755          215 VGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  279 (554)
Q Consensus       215 v~~~l~~~~~~~~-------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~  279 (554)
                      +++++.+.+..++             .++.||++..+..... ..++++.+++++++++|.  |++|++ +++       
T Consensus       186 ~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~~-------  256 (561)
T TIGR02713       186 VLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-IDF-------  256 (561)
T ss_pred             HHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecc-------
Confidence            9999876543221             1335666654211111 136678999999999986  776632 222       


Q ss_pred             CCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 008755          280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD  359 (554)
Q Consensus       280 ~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~  359 (554)
                       |.+.+..      ...+...+..+.+..+..++..+.+.+.|.++.++..+..++..+|.+++..|+.+++.+.++|++
T Consensus       257 -~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~  329 (561)
T TIGR02713       257 -APFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAG  329 (561)
T ss_pred             -hhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2221110      111112222233444556666667789999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755          360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (554)
Q Consensus       360 ~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le  438 (554)
                      +|+||+||+|.+++..+ ...+..........||.++|++|+|+|+||+|+. +|+|+|+|+++++++|..++++++.+|
T Consensus       330 ~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le  408 (561)
T TIGR02713       330 VDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQ  408 (561)
T ss_pred             CCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHH
Confidence            99999999999875432 2122222223334589999999999999999986 899999999999999999999999998


Q ss_pred             HHH
Q 008755          439 ASL  441 (554)
Q Consensus       439 ~~l  441 (554)
                      +..
T Consensus       409 ~~~  411 (561)
T TIGR02713       409 AAS  411 (561)
T ss_pred             hcc
Confidence            763

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PRK06828 amidase; Provisional

Probab=100.00  E-value=3.7e-78  Score=624.08  Aligned_cols=396  Identities=18%  Similarity=0.200  Sum_probs=302.4

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccc
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~   70 (554)
                      ++.+|+.+++.++     .    ++|  +.|   +.+|||++...+ ++++|+       .++..|||+||||+|||+|+
T Consensus        14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~   92 (491)
T PRK06828         14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE   92 (491)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence            5677777755544     2    233  556   589999997665 444332       35567999999999999999


Q ss_pred             cCC-cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008755           71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG  141 (554)
Q Consensus        71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~---~~~~G  141 (554)
                      |+| ++||+||+.+.+  .++.+||++|+|||++|||++||||||||+++     .++.|++||+|+||||+   +|+||
T Consensus        93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG  170 (491)
T PRK06828         93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG  170 (491)
T ss_pred             ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence            996 999999999876  47889999999999999999999999999975     58899999999999999   68999


Q ss_pred             CCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcC
Q 008755          142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ  221 (554)
Q Consensus       142 GSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~  221 (554)
                      |||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus       171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g  250 (491)
T PRK06828        171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG  250 (491)
T ss_pred             cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCccc---------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccc
Q 008755          222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (554)
Q Consensus       222 ~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~  278 (554)
                      .+..+                     ..++.||++..+.+......++++.++++++++.|.  |++|++..++....  
T Consensus       251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p~~~--  328 (491)
T PRK06828        251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIPSFH--  328 (491)
T ss_pred             CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCccch--
Confidence            44211                     134567776432111011257889999999999986  77775433332110  


Q ss_pred             cCCChhhHhhhhhhHHHHHHHHHHHH--HH-----hhhHHHH------hhhCCCCCHHHHH-HHHHhhcCCHHHHHHHHH
Q 008755          279 KVPSLKGFHKTNGELKNVMRLIQRYE--FK-----NNHNEWI------ESVKPALDPDISA-EIGEMLEISETVIENCKS  344 (554)
Q Consensus       279 ~~p~~~~~~~~~~~~~~~~~~~~~~e--~~-----~~~~~~~------~~~~~~~~p~~~~-~~~~g~~~s~~~~~~a~~  344 (554)
                        ..+..+..    ..+....+..+.  ..     ....+.+      ......+++.... ++..+..++..+|.++++
T Consensus       329 --~~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~  402 (491)
T PRK06828        329 --REWSWGVL----LYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARL  402 (491)
T ss_pred             --hHHHHHHH----HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHH
Confidence              00000000    001111111100  00     0000111      1223357775444 466778889999999998


Q ss_pred             HHHHHH--HHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeE
Q 008755          345 IRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVS  419 (554)
Q Consensus       345 ~r~~~~--~~~~~~~~~--~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~  419 (554)
                      .|..+.  +.++++|++  +|+||+||++..                      .++|++|+|+||||+|+. +|+|+|+|
T Consensus       403 ~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~~~GlPvGlQ  460 (491)
T PRK06828        403 EDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYMEGGRPFGIT  460 (491)
T ss_pred             HHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCCCCCcCeEEE
Confidence            887754  699999984  899999999763                      235699999999999986 79999999


Q ss_pred             EEeccCCcHHHHHHHHHHHHH
Q 008755          420 FIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       420 ~~~~~~~d~~ll~~a~~le~~  440 (554)
                      +++++++|..|++++..+|+.
T Consensus       461 lig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        461 LASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             EECCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999865

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=1.3e-79  Score=643.70  Aligned_cols=384  Identities=30%  Similarity=0.422  Sum_probs=292.4

Q ss_pred             hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHH
Q 008755           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV  101 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~  101 (554)
                      +.|+.+|||++...+.++++|+       ++...+|||||||+|||+|+++|++||+||..+.+  .++++|+++|+|||
T Consensus        12 ~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~~~~a~~v~~L~   89 (441)
T PF01425_consen   12 AYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPPTEDAPVVQRLR   89 (441)
T ss_dssp             HHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBBSSS-HHHHHHH
T ss_pred             HhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCcccccchhhhee
Confidence            7789999999988777666543       46788999999999999999999999999999986  48889999999999


Q ss_pred             hCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008755          102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR  181 (554)
Q Consensus       102 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Glk  181 (554)
                      ++|||++||||||||+++.++.|+.||+|+||||++++|||||||||++||+|++++|+|||||||||+||+||||||||
T Consensus        90 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Glk  169 (441)
T PF01425_consen   90 AAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLK  169 (441)
T ss_dssp             HTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE
T ss_pred             cccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhccccceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEccchhhh
Q 008755          182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFEL  242 (554)
Q Consensus       182 PT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-------------------~~~~~~l~i~~~~~~~  242 (554)
                      ||+|+||..|++|+++++|++|||||+++|+..+++++.+.+..+                   ..++.||++..+.+. 
T Consensus       170 PT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~-  248 (441)
T PF01425_consen  170 PTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ-  248 (441)
T ss_dssp             -STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--
T ss_pred             cccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc-
Confidence            999999999999999999999999999999999999988764322                   123567777665441 


Q ss_pred             cCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhh------hHHHHh
Q 008755          243 LKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWIE  314 (554)
Q Consensus       243 ~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~~~~  314 (554)
                      ....++++.++++++++.|.  |+++++         ..+|.+.+...       .+..+...+....      +..++.
T Consensus       249 ~~~~~~~v~~a~~~a~~~L~~~G~~vv~---------~~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~  312 (441)
T PF01425_consen  249 WVPVDPEVRRAFEEAAEALEAAGAEVVE---------VDLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLLA  312 (441)
T ss_dssp             SSTSSHHHHHHHHHHHHHHHHTT-EEEE---------E--TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccccc---------ccCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhhh
Confidence            23468899999999999987  766643         12333332211       1111111122211      112221


Q ss_pred             -hhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCc--hHHH-
Q 008755          315 -SVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SEDY-  385 (554)
Q Consensus       315 -~~~~~~~p~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~--~~~~-  385 (554)
                       .....+.+.+..++..+......     .|.++++.|..+++.+.++|+++|+||+||++.++|+++.....  .... 
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~  392 (441)
T PF01425_consen  313 KWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTAL  392 (441)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhh
Confidence             22345667777777666543222     38999999999999999999999999999999999999876431  1111 


Q ss_pred             --HHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHH
Q 008755          386 --QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL  431 (554)
Q Consensus       386 --~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll  431 (554)
                        ...+..+|.++|++|+|+++||+|+. +|+|+|+|+++++++|+.||
T Consensus       393 ~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL  441 (441)
T PF01425_consen  393 WNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL  441 (441)
T ss_dssp             HHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred             hhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence              12334567999999999999999996 89999999999999999886

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK11910 amidase; Provisional

Probab=100.00  E-value=2.7e-76  Score=609.45  Aligned_cols=392  Identities=20%  Similarity=0.274  Sum_probs=295.9

Q ss_pred             cchhHHHhhhhhhhhHHHHH-----H----Hhh--hccC---CcCceeeccccCCCCCCCC-----CCCCCCCCCceeee
Q 008755            5 SANLWVLLGLGLAGILLMTK-----K----LKK--NIKQ---DFGAFIEKLQLLPPPQPLP-----PKAPHPLTGLSFAV   65 (554)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~---~~~a~~~~~~~~~~~~~~~-----~~~~~pL~Gvp~~v   65 (554)
                      .|.+...|+.+|+.+++.++     .    ++|  +.|+   .+|||++...+ ++++|++     ...+||||||||+|
T Consensus       159 ~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~V  237 (615)
T PRK11910        159 EPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLL  237 (615)
T ss_pred             cccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEE
Confidence            35566677788887766543     2    343  5565   79999998764 3433321     12358999999999


Q ss_pred             ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCCCCCC
Q 008755           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMP  140 (554)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~~~~~  140 (554)
                      ||||+++|++||+||.++.+  .++.+||++|+|||++||||+|||||+||+++     ..+.|.+||+|+||||++|+|
T Consensus       238 KDni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~p  315 (615)
T PRK11910        238 KDNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDP  315 (615)
T ss_pred             EcCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence            99999999999999999986  47889999999999999999999999999977     346788999999999999999


Q ss_pred             CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (554)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~  220 (554)
                      ||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|.|+..+++++.
T Consensus       316 GGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~  395 (615)
T PRK11910        316 SGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALT  395 (615)
T ss_pred             CCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCccc-----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhH
Q 008755          221 QLPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL  293 (554)
Q Consensus       221 ~~~~~~-----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~  293 (554)
                      +.+..+     ..++.||++..+.      .++.+..+++++++.|.  |++|++...+        |.+...       
T Consensus       396 g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~~-------  454 (615)
T PRK11910        396 NTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQK-------  454 (615)
T ss_pred             CCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHHH-------
Confidence            654321     2455677775431      24567788888888776  7777542222        222111       


Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhh-----------------C---CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHH
Q 008755          294 KNVMRLIQRYEFKNNHNEWIESV-----------------K---PALDPDISAEIGEML-EISETV-IENCKSIRNEMRS  351 (554)
Q Consensus       294 ~~~~~~~~~~e~~~~~~~~~~~~-----------------~---~~~~p~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~  351 (554)
                      ...+..+..+|+...+..|+...                 .   ..+++..  ++..+. .++..+ +..+++.|..+++
T Consensus       455 ~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (615)
T PRK11910        455 DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSE--LVKSQQSTITKQQADNLASNLIQSSQN  532 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHHH--HHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence            11122233344444444443211                 1   2233331  112222 234443 3336667778888


Q ss_pred             HHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC--CCCCceeEEEeccCCc
Q 008755          352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGD  427 (554)
Q Consensus       352 ~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~--~g~p~g~~~~~~~~~d  427 (554)
                      .++++|+  ++|+||+|+....                    .+...+++|+|+||||+|+.  +|+|+|+||++++++|
T Consensus       533 ~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE  592 (615)
T PRK11910        533 ELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSD  592 (615)
T ss_pred             HHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCH
Confidence            9999995  7999999973210                    01124599999999999986  4999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQ  442 (554)
Q Consensus       428 ~~ll~~a~~le~~l~  442 (554)
                      ..|++++.++|+..+
T Consensus       593 ~~LL~~A~a~Eq~t~  607 (615)
T PRK11910        593 KILLNMGYAYEQQSK  607 (615)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999987643

>PRK06707 amidase; Provisional

Probab=100.00  E-value=1.2e-74  Score=600.46  Aligned_cols=386  Identities=23%  Similarity=0.261  Sum_probs=293.2

Q ss_pred             hHHHhhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC------CCCCCCCCCCceeeecc
Q 008755            8 LWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSD   67 (554)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~------~~~~~~pL~Gvp~~vKD   67 (554)
                      +...+..+|..++..++     .    ++|  +.|   +.+|||++...+ ++++|+      +....+|||||||+|||
T Consensus        68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD  146 (536)
T PRK06707         68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKD  146 (536)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEec
Confidence            44556777777765443     2    344  445   579999997654 434332      11235899999999999


Q ss_pred             cccc-CCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccc-----cCCCCCCCCCCCCCCCC-CCCC
Q 008755           68 LFDI-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMP  140 (554)
Q Consensus        68 ~~~~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~-~~~~  140 (554)
                      ||++ +|++||+||.++.+  +++.+||++|+|||++|||++|||||+||++.     .++.|++||+|+||||+ .++|
T Consensus       147 ~i~~~~g~~TtaGs~~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~p  224 (536)
T PRK06707        147 NVQTAKVMPTSAGTYVLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDT  224 (536)
T ss_pred             ccccCCCCccCcccHhhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence            9999 99999999999976  47889999999999999999999999999963     57788999999999999 6899


Q ss_pred             CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (554)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~  220 (554)
                      ||||||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+|.|+..+++++.
T Consensus       225 GGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~  304 (536)
T PRK06707        225 SGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMI  304 (536)
T ss_pred             CCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc---------------------CCCCceEEEccchhhhcCCChHHHHHH-HHHHHHHHc--CCccceeccCcccc
Q 008755          221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYF  276 (554)
Q Consensus       221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~l~~~v  276 (554)
                      +.+..|                     ..+++||++..+..     .++++.++ ++++++.|.  |+++++...+... 
T Consensus       305 g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l~~~-  378 (536)
T PRK06707        305 GYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQLNNG-  378 (536)
T ss_pred             CCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCCchh-
Confidence            654221                     13456777754321     24556666 476777665  8877542322210 


Q ss_pred             cccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhhhC--------C--CC-CHHHHHHHHHhhcCC---------H
Q 008755          277 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVK--------P--AL-DPDISAEIGEMLEIS---------E  336 (554)
Q Consensus       277 ~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--------~--~~-~p~~~~~~~~g~~~s---------~  336 (554)
                           ....            ..+..+|+..++..|+....        +  .+ .++++.++..+..+.         .
T Consensus       379 -----~~~~------------~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (536)
T PRK06707        379 -----GVDN------------LQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITK  441 (536)
T ss_pred             -----hHHH------------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccccc
Confidence                 0000            01112333333333322110        0  02 256666666554321         2


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-C
Q 008755          337 -TVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-D  412 (554)
Q Consensus       337 -~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~  412 (554)
                       ..+..+++.|..+++.++++|+  ++|+||+|...                      .+.++|++|+|+||||+|+. +
T Consensus       442 ~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~~----------------------~t~~an~aG~PaitvP~G~~~~  499 (536)
T PRK06707        442 DEFEKVVQTSQENAKKELDRYLVEKGLDALVMINNE----------------------EVLLSAVAGYPELAVPAGYDNN  499 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCCC----------------------cchhhHhcCCCeEEEecccCCC
Confidence             2344566778889999999998  89999998310                      25678999999999999986 8


Q ss_pred             CCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          413 KCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       413 g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      |+|+|+||++.+++|..|++++..+|+..
T Consensus       500 GlP~Glqlig~~~~e~~LL~~A~~~E~~~  528 (536)
T PRK06707        500 GEPVGAVFVGKQFGEKELFNIGYAYEQQS  528 (536)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999998754

>PRK06565 amidase; Validated

Probab=100.00  E-value=2e-72  Score=576.65  Aligned_cols=429  Identities=19%  Similarity=0.211  Sum_probs=296.6

Q ss_pred             HHHhhhhhhhhHHHHH-----H----Hhh--hcc-----CCcCceeeccccCCCCCCC-------CCCCCCCCCCceeee
Q 008755            9 WVLLGLGLAGILLMTK-----K----LKK--NIK-----QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAV   65 (554)
Q Consensus         9 ~~~~~~~~~~~~~~~~-----~----~~~--~~~-----~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~v   65 (554)
                      ..++..+|..++..++     .    ++|  +.|     +.+|||+...++ ++++|+       +++..||||||||+|
T Consensus         5 ~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~v   83 (566)
T PRK06565          5 TEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTA   83 (566)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence            3456667766655443     2    343  556     689999986554 444332       355679999999999


Q ss_pred             ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCC----CCC
Q 008755           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPG  141 (554)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~----~~G  141 (554)
                      ||+|+++|++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+++    +||
T Consensus        84 KD~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pG  160 (566)
T PRK06565         84 KDSYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFAS  160 (566)
T ss_pred             ecccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCC
Confidence            99999999999999999976  47889999999999999999999999999999876 679999999999999    599


Q ss_pred             CCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcC
Q 008755          142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ  221 (554)
Q Consensus       142 GSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~  221 (554)
                      |||||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus       161 GSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g  240 (566)
T PRK06565        161 GSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVA  240 (566)
T ss_pred             CCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCccc--------------------------------CCCCceEEEccchhhhcC------------------CChHHHH
Q 008755          222 LPFAA--------------------------------QRSPRQIIIADDCFELLK------------------IPADRVV  251 (554)
Q Consensus       222 ~~~~~--------------------------------~~~~~~l~i~~~~~~~~~------------------~~~~~~~  251 (554)
                      .+..+                                ..+++||++...++....                  ..++++.
T Consensus       241 ~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  320 (566)
T PRK06565        241 DDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVI  320 (566)
T ss_pred             CCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHH
Confidence            43211                                124567877655432110                  1256899


Q ss_pred             HHHHHHHHHHc--CCccceeccCccc--ccccCC---Ch-------hhHhhh-hhhH-HHHHHH-HHHHH--HHhhhHHH
Q 008755          252 QVVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SL-------KGFHKT-NGEL-KNVMRL-IQRYE--FKNNHNEW  312 (554)
Q Consensus       252 ~~~~~a~~~l~--G~~vv~~~~l~~~--v~~~~p---~~-------~~~~~~-~~~~-~~~~~~-~~~~e--~~~~~~~~  312 (554)
                      ++++++++.|.  |++|++ .++...  .+...+   .+       .+|... ...+ ...+.. +....  ....+.+.
T Consensus       321 ~~~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di  399 (566)
T PRK06565        321 DLWEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADV  399 (566)
T ss_pred             HHHHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHh
Confidence            99999999997  887753 333321  011001   00       011000 0000 000000 00000  00001111


Q ss_pred             Hhh--h--CC----CCCHHHHHH----HH--H-h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCcEEEEcCCCCCC
Q 008755          313 IES--V--KP----ALDPDISAE----IG--E-M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVTPTTAYPP  372 (554)
Q Consensus       313 ~~~--~--~~----~~~p~~~~~----~~--~-g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~D~ll~Pt~~~~a  372 (554)
                      ...  .  .+    ...+.....    .+  . + .. .....|.+.++.++..++ .++++|+  +.|+||.|+.+..+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~  479 (566)
T PRK06565        400 DGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVG  479 (566)
T ss_pred             hhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Confidence            110  0  00    000111100    11  0 1 01 112235556666666665 6777775  56899999999998


Q ss_pred             CCCCCCCCchHHH--HH-HHhhhhhc-ccccCCceecccCCCC--CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          373 PKLGGKEMLSEDY--QN-RAFSLLSI-ASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       373 p~~~~~~~~~~~~--~~-~~~~~t~~-~nl~G~PaisvP~g~~--~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      |..+........+  ++ .+...+.. .+++|+|+||||+|+.  .|||+|++|+++.|+|..|++++..+|++.+
T Consensus       480 ~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~  555 (566)
T PRK06565        480 PADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS  555 (566)
T ss_pred             cccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence            8876543321111  11 11122333 4899999999999986  7999999999999999999999999997653

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-67  Score=522.77  Aligned_cols=399  Identities=28%  Similarity=0.341  Sum_probs=288.1

Q ss_pred             hccCCcCceeeccccCCCCCC-------CCCCCCCCCCCceeeeccccccCCccc-CCCChhhhhcCCCCCCCHHHHHHH
Q 008755           29 NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTL  100 (554)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~pL~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~L  100 (554)
                      ...+.+|+++....+.++.++       .++...+||+||||+|||||+++|++| ||+|..+..  +.++.||++|++|
T Consensus        46 ~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L  123 (506)
T KOG1211|consen   46 NKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKL  123 (506)
T ss_pred             hhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHH
Confidence            444445555554333233322       345678999999999999999999999 777766654  6899999999999


Q ss_pred             HhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008755          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (554)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~Gl  180 (554)
                      |++|||++|||||+||+++..+++.+||+|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+||
T Consensus       124 ~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~  203 (506)
T KOG1211|consen  124 REAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGF  203 (506)
T ss_pred             hhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc--------------------CCCCceEEEccchh
Q 008755          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCF  240 (554)
Q Consensus       181 kPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--------------------~~~~~~l~i~~~~~  240 (554)
                      |||+|++|+.|++|++.++|++||+||++.|...+++++.+.+..|                    ...+.|++|+..++
T Consensus       204 KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~  283 (506)
T KOG1211|consen  204 KPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERL  283 (506)
T ss_pred             ccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeecc
Confidence            9999999999999999999999999999999999988876654322                    23345666766554


Q ss_pred             hhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHh---------hh
Q 008755          241 ELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN---------NH  309 (554)
Q Consensus       241 ~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~---------~~  309 (554)
                      ...  ....+.+.+++..+.|.  |..+ .+..+..........    .  .....+++..+.++....         ..
T Consensus       284 ~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~~lp~~~~~~~~~----~--~~s~~ea~s~laryd~~~~~~r~~~~~~~  354 (506)
T KOG1211|consen  284 VQG--LSSGVLSLWEELADLLGSLGAKV-NEVSLPTTINGLCGY----S--LSSASEAASNLARYDGILYGHRRDFKVAD  354 (506)
T ss_pred             ccc--ccHHHHHHHHHHHHHhhcccccc-eeeecchhhhccccc----c--ccchhhhhhhHHHHHHHHhhcchhhhhcc
Confidence            322  24567777777766654  4443 222222221111110    0  000123333333332221         11


Q ss_pred             HHHHhh-hCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHH---hhcCCCcEEEEcCCCCCCCCCCCCCC
Q 008755          310 NEWIES-VKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM  380 (554)
Q Consensus       310 ~~~~~~-~~~~~~p~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~---~~~~~~D~ll~Pt~~~~ap~~~~~~~  380 (554)
                      ..++.. +...++.++..++..+.-+     ....+.++++.|+.+...+.   ..+++.|+|++||.|.+.+..... .
T Consensus       355 ~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~  433 (506)
T KOG1211|consen  355 EEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-E  433 (506)
T ss_pred             ceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-c
Confidence            222221 2234555666666654322     33345678888888887877   688999999999943332222111 1


Q ss_pred             chHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755          381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (554)
Q Consensus       381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~a~~le~  439 (554)
                      ...........+++++|++|+|+|+||+|+. +|+|+|+|+++..++|..++.++..++.
T Consensus       434 ~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~  493 (506)
T KOG1211|consen  434 TLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ  493 (506)
T ss_pred             ccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence            1111111223479999999999999999987 8899999999999999988888887664

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-61  Score=482.42  Aligned_cols=417  Identities=22%  Similarity=0.247  Sum_probs=299.2

Q ss_pred             hHHHhhhhhhhhHHHHHH-----H----hh--hccCCcCceeeccccCCCCCCCC-------CCCCCCCCCceeeecccc
Q 008755            8 LWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDLF   69 (554)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-----~----~~--~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~pL~Gvp~~vKD~~   69 (554)
                      +..+|++.|++.++++|.     +    +|  .+|+.+||+++...+.+..+++.       ...++||.||||+|||+|
T Consensus        52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~  131 (560)
T KOG1212|consen   52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI  131 (560)
T ss_pred             HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence            667899999999988883     1    33  88999999999888766555431       225689999999999999


Q ss_pred             ccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 008755           70 DIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV  149 (554)
Q Consensus        70 ~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaa  149 (554)
                      .++|+.+|.|.....+  .++++|+.+|+.||++|||++.+||+||..++..+.|+.||+|.||||.+|+|||||||+||
T Consensus       132 ~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA  209 (560)
T KOG1212|consen  132 SVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA  209 (560)
T ss_pred             eecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence            9999999999876554  58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCC----CCCcccccccCHHHHHHHHHHhcCCCc-
Q 008755          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPF-  224 (554)
Q Consensus       150 aVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~----s~d~~G~~ar~~~dl~~v~~~l~~~~~-  224 (554)
                      ++++|.++||+|||.|||||+||+|||++|+|||.+|+|..|+.+..+    .+-+.|||+|+++|+..++..+.+... 
T Consensus       210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~  289 (560)
T KOG1212|consen  210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP  289 (560)
T ss_pred             HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999999877643    345789999999999999988776331 


Q ss_pred             --cc--------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhH
Q 008755          225 --AA--------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF  286 (554)
Q Consensus       225 --~~--------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~  286 (554)
                        .+              ..++.++++-.+  .....+.+...+++.+..+.+.  |+++++.         ..|.+...
T Consensus       290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~--dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~f---------~~~~~~~~  358 (560)
T KOG1212|consen  290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVD--DGFFDPSPAMQRAVQETIDLLEKAGHEVVPF---------DLPDLKHV  358 (560)
T ss_pred             cccCCCCCCchhhhhhhhccCCccceEEec--CCCCCcCHHHHHHHHHHHHHHHhcCcceeEe---------cCCcchHH
Confidence              11              112233333211  1223457788888888876665  7776431         11222211


Q ss_pred             hhhhhh-HHHHHHHHHHHHHH-hhhHHHHhhh--CCCCCHHHHH-----------HHHHhhcCCHHHHHHHHHHHHHHHH
Q 008755          287 HKTNGE-LKNVMRLIQRYEFK-NNHNEWIESV--KPALDPDISA-----------EIGEMLEISETVIENCKSIRNEMRS  351 (554)
Q Consensus       287 ~~~~~~-~~~~~~~~~~~e~~-~~~~~~~~~~--~~~~~p~~~~-----------~~~~g~~~s~~~~~~a~~~r~~~~~  351 (554)
                      +..+.. .......+ ..... ..+.......  --.+......           .+.........+.++.+..++.+|.
T Consensus       359 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~yrl  437 (560)
T KOG1212|consen  359 ADMFFRVMPDDGDYI-SEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYEDIESYRL  437 (560)
T ss_pred             HHHHHHHcccccchh-hHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            110000 00000000 00000 0000000000  0011111111           1122223344445555555666665


Q ss_pred             HHHh--hcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC------------------
Q 008755          352 AISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY------------------  411 (554)
Q Consensus       352 ~~~~--~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~------------------  411 (554)
                      .+..  ...+.|+||||+.+++||+|+......     ..+.||.+||++|+||.+||++..                  
T Consensus       438 k~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~-----~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~~D~~~~  512 (560)
T KOG1212|consen  438 KFILYWLLGKDDVLICPSFPTPAPPHNYPLLLV-----NGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMNDKWAT  512 (560)
T ss_pred             HHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhc-----cchhHHHHHHhccCCcccccccccchhhhcccccccccHHHH
Confidence            5554  446789999999999999998642211     234589999999999888887631                  


Q ss_pred             ---------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHH
Q 008755          412 ---------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE  443 (554)
Q Consensus       412 ---------~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~~  443 (554)
                               .|||+|+|+++.+++|+.++++++.+|+.+..
T Consensus       513 ~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg  553 (560)
T KOG1212|consen  513 KVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGG  553 (560)
T ss_pred             hCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCC
Confidence                     58999999999999999999999999987643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=4.5e-14  Score=130.95  Aligned_cols=94  Identities=47%  Similarity=0.667  Sum_probs=90.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ....++.+...|+.+++.++|++|+..|++||+++|.++.+|.|+|.+|.++|+|+.|+++|+.||.+||.+.++|.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .+|+.+|++++|++
T Consensus       157 ~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen  157 LAYLALGKYEEAIE  170 (304)
T ss_pred             HHHHccCcHHHHHH
Confidence            99999999999975

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.5e-12  Score=127.42  Aligned_cols=93  Identities=42%  Similarity=0.671  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      +.+..+..+||.+|++|+|++||.+|++||+++|+.+..|.|++-||..+|+|++.++++.++|+++|++.+++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhcC
Q 008755          542 REMLGYYKEAIEG  554 (554)
Q Consensus       542 ~~~~~~~~~A~~~  554 (554)
                      +.++|++++|+.|
T Consensus       193 ~E~lg~~~eal~D  205 (606)
T KOG0547|consen  193 HEQLGKFDEALFD  205 (606)
T ss_pred             HHhhccHHHHHHh
Confidence            9999999999865

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.37  E-value=5.1e-12  Score=110.02  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~  546 (554)
                      ++.+|..+++.|++++|+..|+++++++|.+..+|.++|.++..+|+|++|+..|+++++++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            55566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHhc
Q 008755          547 YYKEAIE  553 (554)
Q Consensus       547 ~~~~A~~  553 (554)
                      ++++|++
T Consensus       107 ~~~eAi~  113 (144)
T PRK15359        107 EPGLARE  113 (144)
T ss_pred             CHHHHHH
Confidence            7776653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.37  E-value=7.4e-12  Score=107.01  Aligned_cols=93  Identities=11%  Similarity=0.001  Sum_probs=90.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ++..+..+.+|..+++.|++++|+..|+-...+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+++.++++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      |+..+|+.+.|++
T Consensus       112 c~L~lG~~~~A~~  124 (157)
T PRK15363        112 CYLACDNVCYAIK  124 (157)
T ss_pred             HHHHcCCHHHHHH
Confidence            9999999999864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.1e-11  Score=123.09  Aligned_cols=117  Identities=39%  Similarity=0.571  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (554)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  507 (554)
                      ..++.-.+..|+.+.........         +|+.+......|+.+|+.|+|.+|+.+|++||..+|++..+|.|+|.|
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~---------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac  401 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYI---------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC  401 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            44666666666666665555443         346678888889999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |.+++++..|+.+++++++++|++.++|++.|.++..+++|++|++
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle  447 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE  447 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.33  E-value=5.3e-12  Score=95.07  Aligned_cols=67  Identities=33%  Similarity=0.502  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK  529 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p  529 (554)
                      ++..|+.+|..+++.|+|++|+.+|+++|+++|+++.+|+++|.+|++++ ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.30  E-value=1.8e-11  Score=112.43  Aligned_cols=101  Identities=26%  Similarity=0.295  Sum_probs=93.4

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCC
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDK  529 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p  529 (554)
                      +......+|++.+.|+.+|..+...|++++|+..|+++++++|++..++.++|.++ +..|+  +++|.+.++++++++|
T Consensus        62 l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370         62 LQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            34445567899999999999999999999999999999999999999999999985 67787  5999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+++++|.++..+|++++|++
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999975

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.25  E-value=4.6e-11  Score=104.01  Aligned_cols=95  Identities=18%  Similarity=0.093  Sum_probs=88.1

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+......+|.+...++.+|.++...|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++
T Consensus        46 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         46 DFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            33444566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 008755          532 VKAYLRRGTAREMLG  546 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~  546 (554)
                      +..+.+++.+...++
T Consensus       126 ~~~~~~~~~~~~~l~  140 (144)
T PRK15359        126 ASWSEIRQNAQIMVD  140 (144)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999987654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.24  E-value=1e-10  Score=115.14  Aligned_cols=93  Identities=24%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +..+..|+++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|+|++|++.|+++++++|++..+++++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++...|++++|++
T Consensus       141 ~l~~~g~~~eA~~  153 (296)
T PRK11189        141 ALYYGGRYELAQD  153 (296)
T ss_pred             HHHHCCCHHHHHH
Confidence            9999999999975

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.24  E-value=7.9e-11  Score=101.70  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ...+|++....+.+|..+++.|++++|+..|+++++.+|++..++.++|.+++.++++++|+..++++++++|++...++
T Consensus        10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            34567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ++|.++...|++++|++
T Consensus        90 ~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        90 HAAECLLALGEPESALK  106 (135)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            99999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.19  E-value=1.6e-10  Score=116.36  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+...+...|.++..++++|.++++.|+|++|+..|+++++++|++..+|+++|.+|+.+|+|++|+..|+++++++|+
T Consensus        23 ~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         23 DLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            33344444455555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHc
Q 008755          531 NVKAYLRRGTAREML  545 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~  545 (554)
                      +..+...++.+...+
T Consensus       103 ~~~~~~~l~~~~~kl  117 (356)
T PLN03088        103 DSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            555555555554433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=1e-10  Score=108.85  Aligned_cols=108  Identities=18%  Similarity=0.134  Sum_probs=96.3

Q ss_pred             HHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008755          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (554)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  521 (554)
                      .......+...+..++.-.|.++-.|.+++.+|.+.|+|+.|++.++++|.+||+++.+|..+|.+|+.+|+|++|++.|
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay  172 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY  172 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            34445555566677777788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755          522 TKAINLDKKNVKAYLRRGTAREMLGYYK  549 (554)
Q Consensus       522 ~~al~l~p~~~~~~~~~g~~~~~~~~~~  549 (554)
                      +|+|+++|+|....-++.++-.++++-.
T Consensus       173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  173 KKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999988889988877776543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.17  E-value=2.7e-10  Score=101.91  Aligned_cols=92  Identities=17%  Similarity=0.100  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ....+...+|..|+++|++..|...++|||+.||++..+|..+|.+|.++|+.+.|-+.|++|++++|++..+++|.|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            45667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      ++.+|++++|.+
T Consensus       113 LC~qg~~~eA~q  124 (250)
T COG3063         113 LCAQGRPEEAMQ  124 (250)
T ss_pred             HHhCCChHHHHH
Confidence            888888888753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=1.8e-10  Score=100.25  Aligned_cols=93  Identities=37%  Similarity=0.505  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ..+..+...||.+|.+|+|++|...|..||++.|.-     +..|.|+|.|+.+++.++.|+.+|.++|+|+|.+.+++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            456778899999999999999999999999999975     458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhcC
Q 008755          537 RRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~~  554 (554)
                      +++.+|.++.+|++|++|
T Consensus       173 RRAeayek~ek~eealeD  190 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALED  190 (271)
T ss_pred             HHHHHHHhhhhHHHHHHH
Confidence            999999999999999875

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.15  E-value=5.7e-11  Score=111.47  Aligned_cols=89  Identities=48%  Similarity=0.630  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .+.++||.||++|+|++|+.||.+++..+|.|+..+.|++.+|+++++|..|..+|..|+.|+-.+.++|.+++.+...+
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhcC
Q 008755          546 GYYKEAIEG  554 (554)
Q Consensus       546 ~~~~~A~~~  554 (554)
                      |..++|.+|
T Consensus       179 g~~~EAKkD  187 (536)
T KOG4648|consen  179 GNNMEAKKD  187 (536)
T ss_pred             hhHHHHHHh
Confidence            999999875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.12  E-value=1.1e-10  Score=117.24  Aligned_cols=95  Identities=24%  Similarity=0.191  Sum_probs=82.5

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|..+.++-++|.+|+.+|..+-|+..|+++|+++|+++++|+|+|.++-..|+..+|.++|.++|.+.|+++++.+++
T Consensus       281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL  360 (966)
T KOG4626|consen  281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL  360 (966)
T ss_pred             cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence            34577888888888888888888888888888888999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.+|..++++++|..
T Consensus       361 gni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  361 GNIYREQGKIEEATR  375 (966)
T ss_pred             HHHHHHhccchHHHH
Confidence            999999998888863

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.10  E-value=3e-10  Score=114.31  Aligned_cols=98  Identities=21%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      ..+..|+-+.++.++|.+|.++|++++|+.+|+.+|+++|.++++|+|+|..|-.+|+...|+++|.+||.++|.+.+++
T Consensus       380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh  459 (966)
T KOG4626|consen  380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH  459 (966)
T ss_pred             HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence            34456677778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHhc
Q 008755          536 LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~~  553 (554)
                      .++|.+|...|+..+|++
T Consensus       460 sNLasi~kDsGni~~AI~  477 (966)
T KOG4626|consen  460 SNLASIYKDSGNIPEAIQ  477 (966)
T ss_pred             hhHHHHhhccCCcHHHHH
Confidence            888888888888777764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.09  E-value=3.7e-10  Score=83.80  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=60.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      +.+|..+++.|+|++|+..|+++++.+|++..+++.+|.+++++|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.07  E-value=7.3e-10  Score=120.84  Aligned_cols=91  Identities=41%  Similarity=0.567  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ..+..+.++|+.+++.|+|++|+..|+++|+++|+ +..|.++|.||+++|+|++|+.+|+++++++|++.++++++|.+
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a  203 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA  203 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34667899999999999999999999999999996 78999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      |..+|++++|+.
T Consensus       204 ~~~lg~~~eA~~  215 (615)
T TIGR00990       204 YDGLGKYADALL  215 (615)
T ss_pred             HHHcCCHHHHHH
Confidence            999999999975

>PRK12370 invasion protein regulator; Provisional

Probab=99.02  E-value=1.6e-09  Score=116.24  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      |+++.++..+|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..++++++++|.+...++.++.
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHcCCHHHH
Q 008755          541 AREMLGYYKEA  551 (554)
Q Consensus       541 ~~~~~~~~~~A  551 (554)
                      +++..|++++|
T Consensus       415 ~~~~~g~~eeA  425 (553)
T PRK12370        415 ITYYHTGIDDA  425 (553)
T ss_pred             HHHhccCHHHH
Confidence            44444444444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.5e-09  Score=105.44  Aligned_cols=92  Identities=34%  Similarity=0.455  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      .+....+.|+.+|+.|+|..|...|++|+..-.+.               ..++.|++.||+++++|.+|+..|.++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            45567788999999999999999999988653211               246899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755          528 DKKNVKAYLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~~~~~A~~~  554 (554)
                      +|+|.+++|++|.++..+++|+.|+.|
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~d  313 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDD  313 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHH
Confidence            999999999999999999999998754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=6.8e-10  Score=107.00  Aligned_cols=96  Identities=35%  Similarity=0.589  Sum_probs=91.1

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..++..+.+.+.||.++++|+|.+|.++|+.+|.+||++    +..|.|+|.++..+|+.++|+.+|+.+++|+|.+.++
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            456888999999999999999999999999999999986    5679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhcC
Q 008755          535 YLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~~  554 (554)
                      +..+|.|+..+++|++|++|
T Consensus       324 ll~ra~c~l~le~~e~AV~d  343 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVED  343 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.99  E-value=3.1e-09  Score=107.01  Aligned_cols=88  Identities=42%  Similarity=0.605  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .+...|+.++..|+|++|+.+|+++|+++|++..+|+++|.+|+++|+|++|+.+++++++++|++..+|+++|.+|..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhc
Q 008755          546 GYYKEAIE  553 (554)
Q Consensus       546 ~~~~~A~~  553 (554)
                      |+|++|+.
T Consensus        84 g~~~eA~~   91 (356)
T PLN03088         84 EEYQTAKA   91 (356)
T ss_pred             CCHHHHHH
Confidence            99999975

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.98  E-value=4.4e-09  Score=114.74  Aligned_cols=93  Identities=22%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      +|.....|+.+|..+...|++++|+..|+++++++|+++.+|+++|.+++.+|+|++|+.+|+++++++|++..+++++|
T Consensus       361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHh
Q 008755          540 TAREMLGYYKEAI  552 (554)
Q Consensus       540 ~~~~~~~~~~~A~  552 (554)
                      .++..+|++++|+
T Consensus       441 ~~~~~~g~~~eA~  453 (615)
T TIGR00990       441 VTQYKEGSIASSM  453 (615)
T ss_pred             HHHHHCCCHHHHH
Confidence            5555555555554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=1.5e-09  Score=110.69  Aligned_cols=100  Identities=20%  Similarity=0.107  Sum_probs=94.0

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      ..++...|.+..+|+-+|.+|+++++++.|+-+|+||++++|.+.......|..+.++|+.++|++.|++|+.++|.++.
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            33445567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..|.++.++..+++|++|++
T Consensus       559 ~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHH
Confidence            99999999999999999974

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.97  E-value=1.6e-09  Score=101.92  Aligned_cols=95  Identities=23%  Similarity=0.252  Sum_probs=92.1

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ++.+.+.++++|+.++..|++..|+..|.+|++.||++..+++.+|.+|+.+|+-+.|+.++++.|++.|++..+...+|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhcC
Q 008755          540 TAREMLGYYKEAIEG  554 (554)
Q Consensus       540 ~~~~~~~~~~~A~~~  554 (554)
                      .++.++|++++|.+|
T Consensus       114 ~vllK~Gele~A~~D  128 (504)
T KOG0624|consen  114 VVLLKQGELEQAEAD  128 (504)
T ss_pred             hhhhhcccHHHHHHH
Confidence            999999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.97  E-value=1.2e-09  Score=85.66  Aligned_cols=77  Identities=27%  Similarity=0.421  Sum_probs=69.6

Q ss_pred             HccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       476 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+|+|++|+..|+++++.+|.  +..+++++|.||+++|+|++|+..+++ ++.++.+...++.+|.++..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999999999995  567788899999999999999999999 88999999999999999999999999985

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.5e-09  Score=109.06  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .+++.+.-+|..|.-.|+|++|+.+|+.||+.+|++...|+.+|-.+.--.+.++|+..|.+|++|.|.+..+.|++|++
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            57889999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      +..+|.|++|++
T Consensus       508 ~mNlG~ykEA~~  519 (579)
T KOG1125|consen  508 CMNLGAYKEAVK  519 (579)
T ss_pred             hhhhhhHHHHHH
Confidence            999999999975

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.94  E-value=1.2e-08  Score=85.65  Aligned_cols=90  Identities=18%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR  537 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~  537 (554)
                      ++.++.+|..++..|++++|+..|+++++.+|++   ..+++.+|.++++.++|++|+..|++++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578889999999999999999999999988876   5688889999999999999999999999998875   678899


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..++++++|++
T Consensus        82 ~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        82 LGMSLQELGDKEKAKA   97 (119)
T ss_pred             HHHHHHHhCChHHHHH
Confidence            9999999999988864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=98.94  E-value=6.3e-09  Score=111.60  Aligned_cols=101  Identities=15%  Similarity=0.014  Sum_probs=90.4

Q ss_pred             cccccccChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  523 (554)
                      +.+.....|+++..+..+|.+++..         +++++|+..++++++++|+++.++..+|.++...|++++|+..|++
T Consensus       284 ~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~  363 (553)
T PRK12370        284 LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ  363 (553)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3344555678888898888876533         4589999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|+++.+++++|.++..+|++++|++
T Consensus       364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        364 ANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999975

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.7e-09  Score=97.01  Aligned_cols=92  Identities=38%  Similarity=0.487  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ..+..+.+.|+.+|...+|..|+.+|.++|.++|..+.+|.|++.||+++++|+.+..++.++++++|+..+++|.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      +.+.+.|++|+.
T Consensus        88 ~l~s~~~~eaI~   99 (284)
T KOG4642|consen   88 LLQSKGYDEAIK   99 (284)
T ss_pred             HHhhccccHHHH
Confidence            999999999874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=6.5e-10  Score=113.37  Aligned_cols=92  Identities=23%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+..++.|...||+|..+++++.|+++|++||++||++..+|..+|.=+....+|++|..+|++||..+|++..|||.+|
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            34556666666666666666666666666666666655555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHH
Q 008755          540 TAREMLGYYKEA  551 (554)
Q Consensus       540 ~~~~~~~~~~~A  551 (554)
                      .+|.++++++.|
T Consensus       497 ~vy~Kqek~e~A  508 (638)
T KOG1126|consen  497 TVYLKQEKLEFA  508 (638)
T ss_pred             hheeccchhhHH
Confidence            555555554444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=8.3e-09  Score=94.54  Aligned_cols=108  Identities=17%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             HHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          445 ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      ....+...+.......|.+.+.|..+|-+|.+.|++++|...|.|++++.|+++.+++|+|..|+-.|+++.|...+.++
T Consensus       115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a  194 (257)
T COG5010         115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA  194 (257)
T ss_pred             chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence            33333444455555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          525 INLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       525 l~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ....+.+..+..+++.+...+|++++|.
T Consensus       195 ~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         195 YLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             HhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            6666666666666666666666666664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=4.1e-09  Score=99.03  Aligned_cols=96  Identities=24%  Similarity=0.158  Sum_probs=90.0

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+|++++-|..+|..|+..|++..|+..|.+|+++.|++++++..+|.+++...+   -.++.+.+++++++||.+..+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            34689999999999999999999999999999999999999999999999886653   789999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+.+|..+.++|+|.+|+.
T Consensus       230 l~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             HHHHHHHHHHcccHHHHHH
Confidence            9999999999999999974

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.92  E-value=7.8e-09  Score=101.72  Aligned_cols=101  Identities=18%  Similarity=0.066  Sum_probs=85.5

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+.+.+..+|+++..|+.+|..+...|++++|+..|+++++++|++..+|.++|.+++..|++++|+++++++++++|++
T Consensus        86 ~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189         86 DFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            34455566789999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +...+.+ ......+++++|++
T Consensus       166 ~~~~~~~-~l~~~~~~~~~A~~  186 (296)
T PRK11189        166 PYRALWL-YLAESKLDPKQAKE  186 (296)
T ss_pred             HHHHHHH-HHHHccCCHHHHHH
Confidence            7422222 22345567777754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.7e-09  Score=98.63  Aligned_cols=92  Identities=38%  Similarity=0.582  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      +.++.+.+.||.+|+.++|..|+..|.+.|...   |+ +...|+|+|-|.+.+|+|..|+.+|.++++++|.+.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            578899999999999999999999999999874   33 46789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      -+.|+..++++.+|++
T Consensus       159 ~Akc~~eLe~~~~a~n  174 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVN  174 (390)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999999887764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.91  E-value=8.5e-09  Score=115.62  Aligned_cols=99  Identities=14%  Similarity=0.054  Sum_probs=91.6

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      ......+|+ ...+.++|.++.+.|++++|+..|+++++++|+++.+++++|.++.++|++++|++.|+++++++|+++.
T Consensus       600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            333444565 7889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|.++..+|++++|++
T Consensus       679 a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.91  E-value=1.3e-08  Score=80.84  Aligned_cols=88  Identities=40%  Similarity=0.557  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|++.+++++++.|.+...++.++.++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhc
Q 008755          546 GYYKEAIE  553 (554)
Q Consensus       546 ~~~~~A~~  553 (554)
                      +++++|.+
T Consensus        82 ~~~~~a~~   89 (100)
T cd00189          82 GKYEEALE   89 (100)
T ss_pred             HhHHHHHH
Confidence            99998864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.8e-09  Score=105.37  Aligned_cols=89  Identities=44%  Similarity=0.555  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ......||..|..|+|+.|+.+|.++|.++|.|-..|+|+..+|.++++|++|+++..+.++++|+++++|.++|.++..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHhc
Q 008755          545 LGYYKEAIE  553 (554)
Q Consensus       545 ~~~~~~A~~  553 (554)
                      +|+|++|+.
T Consensus        83 lg~~~eA~~   91 (539)
T KOG0548|consen   83 LGDYEEAIL   91 (539)
T ss_pred             cccHHHHHH
Confidence            999999974

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.90  E-value=1.9e-08  Score=90.62  Aligned_cols=91  Identities=21%  Similarity=0.214  Sum_probs=83.3

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      ..+..+..++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++..+|+|++|+..++++++++|++..++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            346788899999999999999999999999999987763   56899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHH
Q 008755          536 LRRGTAREMLGYYK  549 (554)
Q Consensus       536 ~~~g~~~~~~~~~~  549 (554)
                      +.+|.++..+++..
T Consensus       110 ~~lg~~~~~~g~~~  123 (172)
T PRK02603        110 NNIAVIYHKRGEKA  123 (172)
T ss_pred             HHHHHHHHHcCChH
Confidence            99999999988743

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.90  E-value=1.8e-08  Score=90.41  Aligned_cols=92  Identities=16%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...+..++..|..++..|+|++|+..|++++.+.|+.   +.+|.++|.+|..+|++++|+..|+++++++|.+...+++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            4568889999999999999999999999999997763   4589999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHHHHh
Q 008755          538 RGTARE-------MLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~-------~~~~~~~A~  552 (554)
                      +|.++.       .+|++++|+
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHH
Confidence            999998       777877664

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.86  E-value=2.1e-08  Score=108.33  Aligned_cols=97  Identities=12%  Similarity=-0.078  Sum_probs=61.2

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      ..+..|++..++.+++..+.+.+++++|+..++++++.+|+++.+++.+|.++.++|+|++|+..|++++..+|++.+++
T Consensus       112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~  191 (694)
T PRK15179        112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY  191 (694)
T ss_pred             HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence            34445566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHh
Q 008755          536 LRRGTAREMLGYYKEAI  552 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~  552 (554)
                      ..+|.++...|+.++|.
T Consensus       192 ~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        192 VGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            66666666666666654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.86  E-value=1.5e-08  Score=77.04  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=65.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ...++++++|++|+..++++++++|+++..|..+|.+|+++|+|.+|+++++++++++|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999888776553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.85  E-value=3.6e-08  Score=84.90  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (554)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  507 (554)
                      ...-.++..+...+.......      ......++..+..+..|-.++++|++++|...|+-....||.++..+..+|.|
T Consensus         7 ~~~~~~~~~i~~al~~G~tlk------~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~   80 (165)
T PRK15331          7 VSEERVAEMIWDAVSEGATLK------DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV   80 (165)
T ss_pred             hhHHHHHHHHHHHHHCCCCHH------HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            344455555555555433221      12233457788899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +..+++|++|+..|..+..++++++..+|..|.|+..+|+.++|+.
T Consensus        81 ~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         81 CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999999999999999874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.84  E-value=1e-08  Score=110.62  Aligned_cols=97  Identities=4%  Similarity=-0.045  Sum_probs=90.5

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....++++++++.+|.+..+.|++++|+..++++++++|++..++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            33456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++.++|+|++|++
T Consensus       159 ~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        159 LEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HHHHHHHHhcchHHHHH
Confidence            99999999999999975

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.84  E-value=4.8e-08  Score=79.32  Aligned_cols=92  Identities=24%  Similarity=0.269  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRR  538 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~  538 (554)
                      ....+-..|..+...|+.++|++.|.++|.+.|..+.+|+|++++|...|+.++|+.++.+++++.-+.    .++|..+
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            344566678889999999999999999999999999999999999999999999999999999997654    5678999


Q ss_pred             HHHHHHcCCHHHHhcC
Q 008755          539 GTAREMLGYYKEAIEG  554 (554)
Q Consensus       539 g~~~~~~~~~~~A~~~  554 (554)
                      |..|..+|+.+.|..|
T Consensus       122 g~lyRl~g~dd~AR~D  137 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARAD  137 (175)
T ss_pred             HHHHHHhCchHHHHHh
Confidence            9999999999998764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.84  E-value=3.9e-08  Score=92.63  Aligned_cols=103  Identities=17%  Similarity=0.105  Sum_probs=89.6

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--  528 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--  528 (554)
                      ..+.......|.+...+..+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++..  
T Consensus        52 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  131 (234)
T TIGR02521        52 ENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY  131 (234)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence            334444556678888999999999999999999999999999999999999999999999999999999999999864  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +.....++++|.++...|++++|.+
T Consensus       132 ~~~~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521       132 PQPARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            4567788999999999999999864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=98.84  E-value=2.8e-08  Score=97.84  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=84.0

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLD  528 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~  528 (554)
                      .....+..+|++..+|..++.++...+ ++++++..++++++.+|++..+|++++.++.++++.  ++++.+++++++++
T Consensus        59 lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d  138 (320)
T PLN02789         59 LTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD  138 (320)
T ss_pred             HHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence            344556677888888888888888887 578888888888888888888888888888888763  67888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+|..+|++++.++..+++++++++
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~  163 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELE  163 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHH
Confidence            8888888888888888888888765

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.5e-08  Score=91.23  Aligned_cols=104  Identities=21%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cC----------CCHHHHHHHHHHHHHcC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NG----------NNATYYSNRAAAYLESG  512 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p----------~~~~~~~~~a~~~~~~~  512 (554)
                      ..|+....+.-+....+...||.+|+.|+|++|...|+.||..        .|          .....+.|.++|++..+
T Consensus       165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            4555555555677788999999999999999999999999832        23          34567999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755          513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       513 ~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~  554 (554)
                      +|-++++.+...|..+|.|.++||.+|.+.....+..+|.+|
T Consensus       245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D  286 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD  286 (329)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence            999999999999999999999999999999999999988765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.84  E-value=1.1e-08  Score=76.55  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +++.|+|++|+..|+++++.+|++..++..++.||++.|++++|.+.+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999999999999998777766654

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.81  E-value=3.2e-08  Score=88.89  Aligned_cols=99  Identities=16%  Similarity=0.035  Sum_probs=50.4

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKK  530 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~  530 (554)
                      +....+..|+...+|..++..|.+.|+.+.|.+.|++|+.++|++.++++|.|-.+..+|+|++|.+.+++|+..  .+.
T Consensus        58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~  137 (250)
T COG3063          58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE  137 (250)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC
Confidence            333344445555555555555555555555555555555555555555555555555555555555555555542  112


Q ss_pred             CHHHHHHHHHHHHHcCCHHHH
Q 008755          531 NVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A  551 (554)
                      ....+-|+|.|..++|+.+.|
T Consensus       138 ~s~t~eN~G~Cal~~gq~~~A  158 (250)
T COG3063         138 PSDTLENLGLCALKAGQFDQA  158 (250)
T ss_pred             cchhhhhhHHHHhhcCCchhH
Confidence            233444555555555554444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.80  E-value=2e-08  Score=100.03  Aligned_cols=73  Identities=19%  Similarity=0.124  Sum_probs=68.5

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      ....+|+++..|+++|..+++.|+|++|+..|+++|+++|++.++   |+|+|.||.++|++++|++++++|+++.
T Consensus        67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            345678999999999999999999999999999999999999865   9999999999999999999999999983

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.79  E-value=7e-08  Score=88.53  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..++++...+..+|...+.+|+|.+|+..++++.+++|++.++|+.+|.+|.++|++++|-..|.+++++.|+++..+.|
T Consensus        94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nN  173 (257)
T COG5010          94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANN  173 (257)
T ss_pred             ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhh
Confidence            34567777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|+.|.-.|++++|..
T Consensus       174 lgms~~L~gd~~~A~~  189 (257)
T COG5010         174 LGMSLLLRGDLEDAET  189 (257)
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999999999999864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.6e-08  Score=99.55  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..++.....+|++++.|+.+|+.++-.++|++|+..|+|+++++|++.-+|.++|.+.++++++++++..++.+++..|+
T Consensus       381 ~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  381 KDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN  460 (606)
T ss_pred             HHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34445556678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++|...|.++..++++++|++
T Consensus       461 ~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             CchHHHHHHHHHhhHHhHHHHHH
Confidence            99999999999999999988864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.77  E-value=4.7e-08  Score=106.81  Aligned_cols=94  Identities=15%  Similarity=0.047  Sum_probs=47.3

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|+++..+..+|..+.+.|++++|+..|+++++++|++..++.++|.+|.++|++++|++.|+++++.+|++...++.+
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555555444444444


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      |.++..+|++++|+
T Consensus       359 a~al~~~G~~deA~  372 (656)
T PRK15174        359 AAALLQAGKTSEAE  372 (656)
T ss_pred             HHHHHHCCCHHHHH
Confidence            55555555555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.77  E-value=4.1e-08  Score=107.23  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=79.3

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+.......|+.++.++.+|...+..|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++++|+
T Consensus        63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~  142 (656)
T PRK15174         63 TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG  142 (656)
T ss_pred             HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            33344445566777778888887788888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +..++..++.++..+|++++|++
T Consensus       143 ~~~a~~~la~~l~~~g~~~eA~~  165 (656)
T PRK15174        143 NSQIFALHLRTLVLMDKELQAIS  165 (656)
T ss_pred             cHHHHHHHHHHHHHCCChHHHHH
Confidence            88888888888888888777753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5.2e-08  Score=95.51  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=96.7

Q ss_pred             HhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      .+++..+..++..+|.+-.+|+-+|+.|-..+.+.=|+-+|+||+++.|+++..|..+|.||.++++.++|+.+|.+++.
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            44556666777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          527 LDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       527 l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..-.+..+++.+|..|.+++++++|..
T Consensus       461 ~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  461 LGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            988888999999999999999998853

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.75  E-value=9.7e-08  Score=82.26  Aligned_cols=82  Identities=17%  Similarity=0.054  Sum_probs=75.1

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      .......|.+...++.+|..++..|++++|+..|+++++.+|++...++++|.+|..+|++++|+..++++++++|++..
T Consensus        41 ~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        41 QLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            33344567889999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HH
Q 008755          534 AY  535 (554)
Q Consensus       534 ~~  535 (554)
                      ..
T Consensus       121 ~~  122 (135)
T TIGR02552       121 YS  122 (135)
T ss_pred             HH
Confidence            54

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.72  E-value=2.5e-08  Score=74.83  Aligned_cols=58  Identities=40%  Similarity=0.533  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHhc
Q 008755          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIE  553 (554)
Q Consensus       496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~  553 (554)
                      +++..|.++|.+++..++|++|+..|+++++++|+++.+++++|.++..+| ++++|++
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence            367899999999999999999999999999999999999999999999999 7999975

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.72  E-value=1.8e-07  Score=88.07  Aligned_cols=99  Identities=19%  Similarity=0.254  Sum_probs=88.1

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      ......|.+...+..+|..++..|++++|+..|+++++..  +.....+.++|.++...|++++|+..++++++.+|++.
T Consensus        90 ~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  169 (234)
T TIGR02521        90 RALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP  169 (234)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence            3344456777889999999999999999999999999864  45677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++.++.++...|++++|++
T Consensus       170 ~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       170 ESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=2.1e-07  Score=77.19  Aligned_cols=89  Identities=20%  Similarity=0.047  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR  538 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~  538 (554)
                      .++|+.+..+-..|+.++|+..|+++++.....   ..++.++|.+|..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999975543   568999999999999999999999999999898   88888999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      +.++..+|++++|++
T Consensus        82 Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   82 ALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999999999975

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.71  E-value=1.2e-07  Score=81.33  Aligned_cols=76  Identities=17%  Similarity=0.116  Sum_probs=70.3

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ......|.+...|+++|.++...|+|++|+..|.+++.++|+++.++.+.|.||+.+|+.++|.+.++.++...-.
T Consensus        60 ~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363         60 LLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            3344567899999999999999999999999999999999999999999999999999999999999999998733

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.69  E-value=1e-07  Score=90.66  Aligned_cols=94  Identities=23%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---  533 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---  533 (554)
                      .+..+..++.+|..+++.|+|++|+..|+++++.+|+++   .+++.+|.+|++++++++|+..|+++++.+|++..   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            356788999999999999999999999999999999875   68899999999999999999999999999998776   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHhc
Q 008755          534 AYLRRGTAREML--------GYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~--------~~~~~A~~  553 (554)
                      +++.+|.++...        +++++|++
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~  136 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFE  136 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence            799999999876        67777764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.67  E-value=1e-07  Score=93.38  Aligned_cols=93  Identities=25%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH----------------------------------HHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----------------------------------YSNRAA  506 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~~a~  506 (554)
                      +.++..|..+|..+.+.|++++|+..|+++++++|++..+                                  +..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            4677888889999999999999999999999888876543                                  566788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|+.+|++++|+.+++++++.+|+++..+..+|.++...|++++|.+
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             Hhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888999999999999999999999999999999999999888864

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.65  E-value=7.5e-08  Score=108.13  Aligned_cols=102  Identities=7%  Similarity=-0.043  Sum_probs=94.7

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+.......|+++..+.++|..+.+.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus       631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            34445566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ....+..|.++....+++.|.+
T Consensus       711 a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        711 ALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             chhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999988888765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=1.9e-07  Score=92.66  Aligned_cols=101  Identities=20%  Similarity=0.121  Sum_probs=94.2

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+...+..+|+++-.+...+.+++..++.++|++.+++++.++|+....+.++|++|++.|++++|+..+...+.-+|++
T Consensus       328 ~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         328 LLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            34445667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHh
Q 008755          532 VKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      +..|..++.+|..+|+..++.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHH
Confidence            999999999999999887765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=5.9e-07  Score=88.30  Aligned_cols=95  Identities=20%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      -+|+...+|.-.|-.|+..++...|+..|++|++++|.+..+|+.+|++|..++-..=|+=+|++|+++.|++...+-.+
T Consensus       359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.||.++++.++|++
T Consensus       439 G~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIK  453 (559)
T ss_pred             HHHHHHhccHHHHHH
Confidence            999999999999986

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.59  E-value=6.2e-07  Score=85.72  Aligned_cols=71  Identities=14%  Similarity=0.070  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      +.+++.+|..|+..|+|++|+..|+++++..|+   .+++++.+|.+|..+|++++|...|+++++..|++..+
T Consensus       180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            456666666666666666666666666666555   35566666666666666666666666666666665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.59  E-value=5.6e-07  Score=85.61  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~  530 (554)
                      ....+++.+|..+++.|++++|+..|+++++.+|+++.   +++.+|.++++.        +++++|++.++++++.+|+
T Consensus        68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302        68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            34578899999999999999999999999999998776   799999999987        7899999999999999999


Q ss_pred             CHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAY-----------------LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~-----------------~~~g~~~~~~~~~~~A~~  553 (554)
                      +..++                 +.+|..+...|++++|+.
T Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            86542                 466888889999998864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.59  E-value=2.2e-08  Score=99.22  Aligned_cols=91  Identities=46%  Similarity=0.599  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      +..+.+.++.++..++|+.|+..|.|||+++|+.+.+|.++++++.+.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhcC
Q 008755          544 MLGYYKEAIEG  554 (554)
Q Consensus       544 ~~~~~~~A~~~  554 (554)
                      .++++.+|+.+
T Consensus        84 ~l~~~~~A~~~   94 (476)
T KOG0376|consen   84 ALGEFKKALLD   94 (476)
T ss_pred             hHHHHHHHHHH
Confidence            99999998753

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.8e-07  Score=89.80  Aligned_cols=88  Identities=23%  Similarity=0.228  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...+.+++.++.+.++|.+|+..++++|+++|+|..++|.+|.+++.+++|+.|+.+|+++++++|+|..+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999888888877


Q ss_pred             HcCCHHHH
Q 008755          544 MLGYYKEA  551 (554)
Q Consensus       544 ~~~~~~~A  551 (554)
                      +..++++.
T Consensus       337 k~~~~~~k  344 (397)
T KOG0543|consen  337 KIREYEEK  344 (397)
T ss_pred             HHHHHHHH
Confidence            66665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.56  E-value=4e-07  Score=106.28  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=86.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-----------------------  507 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-----------------------  507 (554)
                      ..+.+....+|++..+++.+|.+++..|++++|+..|+++++++|++..++..++.+                       
T Consensus       372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~  451 (1157)
T PRK11447        372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS  451 (1157)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence            344445555678888999999999999999999999999999999987776555443                       


Q ss_pred             -------------------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          508 -------------------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       508 -------------------~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                         +...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++
T Consensus       452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                               4467899999999999999999999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.56  E-value=2e-07  Score=71.79  Aligned_cols=68  Identities=16%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      |..+..+.++|..++..|+|++|+..|++++++.       |.....++++|.+|..+|++++|++.+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5678899999999999999999999999999762       2235689999999999999999999999999863

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.54  E-value=7.2e-07  Score=104.23  Aligned_cols=95  Identities=18%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .+|.++..++.+|..+.+.|++++|+..|+++++.+|++..++.+++.+|...|++++|++.++++++.+|++..++..+
T Consensus       598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l  677 (1157)
T PRK11447        598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV  677 (1157)
T ss_pred             hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|++
T Consensus       678 a~~~~~~g~~~eA~~  692 (1157)
T PRK11447        678 ALAWAALGDTAAAQR  692 (1157)
T ss_pred             HHHHHhCCCHHHHHH
Confidence            999999999999975

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=5.8e-07  Score=82.63  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHhc
Q 008755          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE  553 (554)
Q Consensus       477 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~-~~~~~--~~~A~~  553 (554)
                      .++.++++..|+++++.+|++.+.|..+|.+|..+|++++|+..|+++++++|++...++.+|.++ ...|+  +++|++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999985 67777  466653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=1.5e-07  Score=83.47  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=89.9

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ..++..++++|+.|-..|-+.-|...|.+++.+.|+.+++++.+|..+...|+|+.|.+.++-.+++||.+-.++.|+|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhcC
Q 008755          541 AREMLGYYKEAIEG  554 (554)
Q Consensus       541 ~~~~~~~~~~A~~~  554 (554)
                      +++..|+++-|.+|
T Consensus       142 ~~YY~gR~~LAq~d  155 (297)
T COG4785         142 ALYYGGRYKLAQDD  155 (297)
T ss_pred             eeeecCchHhhHHH
Confidence            99999999988764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.49  E-value=1.5e-06  Score=72.70  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....++.+|..+++.|++++|+..|++++..+|++   ..+++++|.++.+++++++|+..++++++..|++..+.-
T Consensus        38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            36789999999999999999999999999998885   678999999999999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02789 farnesyltranstransferase

Probab=98.48  E-value=2.2e-06  Score=84.59  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             cccChhhHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      +..+|++..+|..++.++.+.+++  ++++..++++|+.+|++..+|++++.++..+++|++++++++++|+++|.|..+
T Consensus        99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789         99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            345678999999999999888874  788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 008755          535 YLRRGTAREML  545 (554)
Q Consensus       535 ~~~~g~~~~~~  545 (554)
                      |++++.++...
T Consensus       179 W~~R~~vl~~~  189 (320)
T PLN02789        179 WNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHhc
Confidence            99999998776

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.47  E-value=1.6e-06  Score=96.71  Aligned_cols=91  Identities=14%  Similarity=-0.035  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....+..++..+...|++++|+..|+++++..|++..++.++|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..++++++|++
T Consensus       438 l~~~~~~~A~~  448 (765)
T PRK10049        438 LDLQEWRQMDV  448 (765)
T ss_pred             HHhCCHHHHHH
Confidence            99999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.47  E-value=1.2e-06  Score=97.74  Aligned_cols=102  Identities=11%  Similarity=-0.035  Sum_probs=73.0

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+.......|.++..+..++..+...|++++|+..++++++.+|++.. +..+|.++...|++++|+..++++++++|+
T Consensus        70 ~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049         70 TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3344444555666777777777777777777777777777777777777 777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +..+++.++.++...++.++|++
T Consensus       149 ~~~~~~~la~~l~~~~~~e~Al~  171 (765)
T PRK10049        149 TQQYPTEYVQALRNNRLSAPALG  171 (765)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHH
Confidence            77777777777777777776653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.45  E-value=4.6e-07  Score=90.42  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHhc
Q 008755          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       493 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+|+++.+|+|+|.+|+++|+|++|+..|+++|+++|++.++   ||++|.+|..+|++++|++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla  133 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD  133 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            589999999999999999999999999999999999999865   9999999999999999986

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.43  E-value=3.8e-06  Score=86.43  Aligned_cols=87  Identities=14%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTAREM  544 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~~  544 (554)
                      .+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++++|++ ..++..++.+|..
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            344555555556666666666666666666555555666666666666666666666666555544 2344555555555


Q ss_pred             cCCHHHHh
Q 008755          545 LGYYKEAI  552 (554)
Q Consensus       545 ~~~~~~A~  552 (554)
                      +|++++|+
T Consensus       262 ~g~~~~A~  269 (389)
T PRK11788        262 LGDEAEGL  269 (389)
T ss_pred             cCCHHHHH
Confidence            55555554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=2.6e-06  Score=74.30  Aligned_cols=91  Identities=20%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      -...+.+.++..++..|++++|+..|+++++..|+.   ..+...++.+++..|+|++|+..+++ +.-.+-.+.++..+
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~  124 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL  124 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence            447788999999999999999999999999987665   45788999999999999999999977 34444556778889


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.+|...|++++|++
T Consensus       125 Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen  125 GDIYLAQGDYDEARA  139 (145)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999999999974

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.41  E-value=2.4e-06  Score=87.89  Aligned_cols=94  Identities=27%  Similarity=0.302  Sum_probs=86.0

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      .+.+...+..++..+.+.|++++|+..|+++++.+|.+.     ..+..+|.++.+.+++++|+..++++++++|++..+
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  216 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA  216 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence            456778899999999999999999999999999988753     356789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.+|.++...|++++|++
T Consensus       217 ~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999975

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.39  E-value=2.1e-06  Score=97.96  Aligned_cols=95  Identities=18%  Similarity=0.090  Sum_probs=73.2

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...|+++..+..++..+.+.|+ .+|+..|++++++.|+++..+.++|.+++.+|++++|+..++++++++|.++..+++
T Consensus       798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  876 (899)
T TIGR02917       798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH  876 (899)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            3445666667777777777777 667777777777777777777778888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      ++.++...|++++|++
T Consensus       877 l~~~~~~~g~~~~A~~  892 (899)
T TIGR02917       877 LALALLATGRKAEARK  892 (899)
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            8888888888888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.37  E-value=4e-06  Score=88.91  Aligned_cols=110  Identities=18%  Similarity=0.120  Sum_probs=100.2

Q ss_pred             HHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (554)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  523 (554)
                      .....+...+...+...|..+.+|+.+|.+|-++|+.++++...-.|-.++|++.+.|..++....++|++++|.-+|.+
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r  232 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR  232 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            44444445556667788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ||+++|.+.+.+++++..|.++|++..|..
T Consensus       233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~  262 (895)
T KOG2076|consen  233 AIQANPSNWELIYERSSLYQKTGDLKRAME  262 (895)
T ss_pred             HHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence            999999999999999999999999988864

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.36  E-value=4.6e-06  Score=70.43  Aligned_cols=86  Identities=19%  Similarity=0.150  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY  535 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~  535 (554)
                      ..+..++..|...++.|+|++|++.|++....-|.   -..+...++.+|++.++|++|+..+++-|+|+|.++.   ++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            34678999999999999999999999999988776   3578999999999999999999999999999998754   78


Q ss_pred             HHHHHHHHHcCC
Q 008755          536 LRRGTAREMLGY  547 (554)
Q Consensus       536 ~~~g~~~~~~~~  547 (554)
                      |.+|.+++.+..
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.36  E-value=3.1e-06  Score=85.90  Aligned_cols=95  Identities=14%  Similarity=-0.018  Sum_probs=85.1

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KA  534 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~~  534 (554)
                      ..+.....+..+|..+...|++++|+..++++++++|++..++..+|.+|++.|++++|++.++++++..|...    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            34667778888999999999999999999999999999999999999999999999999999999999987432    35


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.++.++..+|++++|++
T Consensus       189 ~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         189 WWHLALFYLERGDYEAALA  207 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHH
Confidence            6789999999999999864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.36  E-value=2.3e-06  Score=90.68  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .++.+.+++.+.++.+.|+|++|+.+|..++...+. +..+|+.+|.||.+++.|++|+++|++++.++|++..+...++
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La  490 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA  490 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence            467889999999999999999999999999887765 4679999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++.++|+.|+|++
T Consensus       491 sl~~~~g~~EkalE  504 (895)
T KOG2076|consen  491 SLYQQLGNHEKALE  504 (895)
T ss_pred             HHHHhcCCHHHHHH
Confidence            99999999999975

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.35  E-value=6.6e-06  Score=82.80  Aligned_cols=90  Identities=19%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ++....++..++..++..+|+..++++|+.+|.++..+..-+..+++.++|+.|+..+++++++.|++.+.|+.++.+|.
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34566688899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      ++|++++|+.
T Consensus       280 ~~~d~e~ALl  289 (395)
T PF09295_consen  280 QLGDFENALL  289 (395)
T ss_pred             hcCCHHHHHH
Confidence            9999999973

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.34  E-value=4.1e-06  Score=95.56  Aligned_cols=94  Identities=20%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|++...+..++..++..|++++|+..++++++.+|.+..++..+|.+++..|++++|+..|+++++++|++...++.+
T Consensus       154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~  233 (899)
T TIGR02917       154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL  233 (899)
T ss_pred             cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34555666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      +.++...|++++|.
T Consensus       234 ~~~~~~~g~~~~A~  247 (899)
T TIGR02917       234 ATILIEAGEFEEAE  247 (899)
T ss_pred             HHHHHHcCCHHHHH
Confidence            77777777777664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.30  E-value=3.9e-06  Score=87.52  Aligned_cols=94  Identities=27%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p~~~~~~~~  537 (554)
                      .+-.+..|+..|..+...|++.+|...|..|+.+||++......+|.++.+.|+-.-|..  .+..+++++|.++++||+
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            466788999999999999999999999999999999999999999999999998666666  999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++.++|+.++|.+
T Consensus       760 LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAE  775 (799)
T ss_pred             HHHHHHHccchHHHHH
Confidence            9999999999998864

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=7.3e-06  Score=72.02  Aligned_cols=77  Identities=22%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ....-.|.++|.++++.++++.|+..+.|+|+++|.+..++..+|.+|.++.+|++|+.+|.+.++++|.+.++.-.
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999998776443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.30  E-value=1.1e-05  Score=72.58  Aligned_cols=81  Identities=25%  Similarity=0.320  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcC
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--------------FLQAEADCTKAINLD  528 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~l~  528 (554)
                      ....+..+|..+.+.|++++|+..|+++++.+|++...+.++|.+|..+++              +++|++.++++++++
T Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603         71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999999999999999999999999887              788999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 008755          529 KKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~  546 (554)
                      |++   +...+..+...+
T Consensus       151 p~~---~~~~~~~~~~~~  165 (172)
T PRK02603        151 PNN---YIEAQNWLKTTG  165 (172)
T ss_pred             chh---HHHHHHHHHhcC
Confidence            987   334444444333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.28  E-value=1.7e-06  Score=63.90  Aligned_cols=52  Identities=27%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++..+|++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~   52 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA   52 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4689999999999999999999999999999999999999999999999974

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.26  E-value=2.1e-06  Score=67.11  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      +...++.+|.++++.|+|++|+..+++ ++.++.+...++.+|.|++++|+|++|+..++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            667888899999999999999999999 8899999899999999999999999999999875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.9e-06  Score=86.82  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      ..|.++-.+.++|.++++.+.|.+|+.+|+++++.-+       .....++|+|.+|.++++|++|+..++++|.+.|.+
T Consensus       409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            3567788888888888888888888888888874321       134457888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +..|-..|.+|..+|+++.|++
T Consensus       489 ~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHH
Confidence            8888888888888888888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.25  E-value=2.1e-07  Score=88.25  Aligned_cols=87  Identities=33%  Similarity=0.489  Sum_probs=79.1

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      .-.+..++..|++++|+++|..+|+++|.....|..++.+++++++...|+.+|..+++++|+..+.|-.+|.+...+|+
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            33456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 008755          548 YKEAIEG  554 (554)
Q Consensus       548 ~~~A~~~  554 (554)
                      |++|..|
T Consensus       198 ~e~aa~d  204 (377)
T KOG1308|consen  198 WEEAAHD  204 (377)
T ss_pred             hHHHHHH
Confidence            9988653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.24  E-value=1.8e-05  Score=70.88  Aligned_cols=71  Identities=24%  Similarity=0.186  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHc
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-------ESGSFL-------QAEADCTKAINL  527 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-------~~~~~~-------~A~~~~~~al~l  527 (554)
                      ..+..++++|.++...|++++|+..|+++++++|.+...+.++|.++.       .+|+++       +|+..+++++.+
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033         70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence            356689999999999999999999999999999999999999999999       777876       556666667777


Q ss_pred             CCCCH
Q 008755          528 DKKNV  532 (554)
Q Consensus       528 ~p~~~  532 (554)
                      +|++.
T Consensus       150 ~p~~~  154 (168)
T CHL00033        150 APGNY  154 (168)
T ss_pred             CcccH
Confidence            88654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=5.8e-06  Score=83.80  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~  546 (554)
                      -+..|..++++|+..+|+-+|+.|+..||.+.++|..+|.++.+.++-..|+..++++++++|+|-+++..||+.|...+
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CHHHHhc
Q 008755          547 YYKEAIE  553 (554)
Q Consensus       547 ~~~~A~~  553 (554)
                      .-.+|+.
T Consensus       368 ~q~~Al~  374 (579)
T KOG1125|consen  368 LQNQALK  374 (579)
T ss_pred             hHHHHHH
Confidence            8777754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.20  E-value=8.1e-06  Score=64.26  Aligned_cols=71  Identities=27%  Similarity=0.374  Sum_probs=65.9

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      .+.+...+..+|..+...+++++|+..|+++++..|.+...+..++.++...+++++|...++++++++|+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          30 DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            34556889999999999999999999999999999999999999999999999999999999999998874

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.3e-06  Score=84.70  Aligned_cols=94  Identities=39%  Similarity=0.486  Sum_probs=87.6

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      +....+...+.+|+.++++.+|.+|+..|+.||++.|+++..|.+++.+++..++|++|+.++++.++++|.+.+++.+.
T Consensus        44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~  123 (486)
T KOG0550|consen   44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE  123 (486)
T ss_pred             hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence            33466788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      +.++..+++..+|.
T Consensus       124 ~~c~~a~~~~i~A~  137 (486)
T KOG0550|consen  124 GQCHLALSDLIEAE  137 (486)
T ss_pred             hhhhhhhHHHHHHH
Confidence            99999988877764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.20  E-value=1.5e-06  Score=54.49  Aligned_cols=31  Identities=48%  Similarity=0.733  Sum_probs=15.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 008755          487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQA  517 (554)
Q Consensus       487 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A  517 (554)
                      |+|||+++|+++.+|+++|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            4444445555555555555554444444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=2.1e-06  Score=53.90  Aligned_cols=34  Identities=35%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       520 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999975

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=1.5e-05  Score=79.44  Aligned_cols=93  Identities=22%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +.....+|-.+..++..|++++|+..++..+...|+|+..+...+.++++.++.++|++.+++++.++|+.....+++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      +|.+.|++.+|+.
T Consensus       383 all~~g~~~eai~  395 (484)
T COG4783         383 ALLKGGKPQEAIR  395 (484)
T ss_pred             HHHhcCChHHHHH
Confidence            9999999999874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=3.7e-05  Score=72.71  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=86.1

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLR  537 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~  537 (554)
                      .+-+.+..+.+++..+....+.++|+..+.||++.||+...+-..+|.+++..|+|++|++.++.+++.||++ +++.-.
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999987 456777


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      +-.||.++|+.++.+
T Consensus       255 L~~~Y~~lg~~~~~~  269 (389)
T COG2956         255 LYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHhCCHHHHH
Confidence            899999999988764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.17  E-value=1.8e-05  Score=75.11  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  535 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~  535 (554)
                      ..++.++..|..+++.|+|++|+..|++.++..|....+   .+.+|.+|+++++|++|+..+++.++++|++   ..++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            456778999999999999999999999999999987654   4899999999999999999999999999976   5578


Q ss_pred             HHHHHHHHHcC
Q 008755          536 LRRGTAREMLG  546 (554)
Q Consensus       536 ~~~g~~~~~~~  546 (554)
                      |.+|.++..++
T Consensus       110 Y~~g~~~~~~~  120 (243)
T PRK10866        110 YMRGLTNMALD  120 (243)
T ss_pred             HHHHHhhhhcc
Confidence            99998865554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.13  E-value=4.2e-05  Score=66.76  Aligned_cols=80  Identities=24%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             ChhhHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQAE  518 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~  518 (554)
                      +|.+++.+++.|.+++..          ..+++|+..|++||.++|+.-++++++|.+|..++.           |++|.
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            568899999999887664          346778999999999999999999999999985543           89999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHH
Q 008755          519 ADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       519 ~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+|++|..++|+|.....-+-
T Consensus       101 ~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen  101 EYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHH
Confidence            999999999998765544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK11906 transcriptional regulator; Provisional

Probab=98.12  E-value=3e-05  Score=77.80  Aligned_cols=93  Identities=12%  Similarity=-0.095  Sum_probs=55.1

Q ss_pred             ChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          460 QKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      +|..+.++..++.+++..         .+-.+|.++.++|+++||+++.++..+|.++...++++.|+..+++|+.++|+
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn  370 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD  370 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence            344455555555444332         23445556666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHh
Q 008755          531 NVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ++.++|..|..+...|+.++|+
T Consensus       371 ~A~~~~~~~~~~~~~G~~~~a~  392 (458)
T PRK11906        371 IASLYYYRALVHFHNEKIEEAR  392 (458)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666666666666666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.12  E-value=1.6e-05  Score=76.14  Aligned_cols=90  Identities=12%  Similarity=-0.003  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHH
Q 008755          464 AEIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYL  536 (554)
Q Consensus       464 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~  536 (554)
                      ...+++.+..+ ++.|+|++|+..|++.++..|+.   +.+++.+|.+|+..|+|++|+..|+++++..|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34567777765 66799999999999999999997   579999999999999999999999999999887   477899


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++..+|++++|++
T Consensus       222 klg~~~~~~g~~~~A~~  238 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKA  238 (263)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            99999999999999975

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=3.5e-05  Score=72.00  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHH
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT  540 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~  540 (554)
                      .|+.+..+++.|+|.+|...|.+-|+.-|+.   +.++|=+|.+++.+|+|++|...|..+++-.|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6777778888888888888888888887764   5677888888888888888888888888877654   556888888


Q ss_pred             HHHHcCCHHHHh
Q 008755          541 AREMLGYYKEAI  552 (554)
Q Consensus       541 ~~~~~~~~~~A~  552 (554)
                      ++..+|+.++|.
T Consensus       224 ~~~~l~~~d~A~  235 (262)
T COG1729         224 SLGRLGNTDEAC  235 (262)
T ss_pred             HHHHhcCHHHHH
Confidence            888888888775

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.10  E-value=4.1e-05  Score=77.68  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-------------------------------------HHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAA  506 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~a~  506 (554)
                      .+....++..++..|++++|+..++++++.+|++.                                     .++..+|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            34455556666666666666666666666655543                                     34456777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|+..++++++++|++..++..+|.+++.+|++++|++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~  169 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA  169 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            88999999999999999999999999999999999999999999974

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.09  E-value=1.7e-05  Score=79.58  Aligned_cols=94  Identities=16%  Similarity=0.077  Sum_probs=81.1

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      -.+.|+.++..+|......++++.|+..|++|+.++|+.+.+|+.+|.+....|+.++|.+.++++++++|....+-..+
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~  412 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK  412 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999887765555


Q ss_pred             HHH-HHHcCCHHHHh
Q 008755          539 GTA-REMLGYYKEAI  552 (554)
Q Consensus       539 g~~-~~~~~~~~~A~  552 (554)
                      -++ .+.....++|+
T Consensus       413 ~~~~~~~~~~~~~~~  427 (458)
T PRK11906        413 ECVDMYVPNPLKNNI  427 (458)
T ss_pred             HHHHHHcCCchhhhH
Confidence            444 44444445444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.09  E-value=1.1e-05  Score=78.85  Aligned_cols=91  Identities=20%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .++..+......+...++++++...++++.+..  +.++..|..+|.++.+.|++++|+.+|+++++++|++..+...++
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345566677778899999999999999988765  678899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHh
Q 008755          540 TAREMLGYYKEAI  552 (554)
Q Consensus       540 ~~~~~~~~~~~A~  552 (554)
                      .++...|+++++.
T Consensus       188 ~~li~~~~~~~~~  200 (280)
T PF13429_consen  188 WLLIDMGDYDEAR  200 (280)
T ss_dssp             HHHCTTCHHHHHH
T ss_pred             HHHHHCCChHHHH
Confidence            9999999988754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.08  E-value=4.2e-05  Score=70.75  Aligned_cols=84  Identities=21%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY  535 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~  535 (554)
                      .++..++..|..+++.|+|.+|+..|++.+...|..   ..+.+.+|.++++.++|++|+..+++-++..|++.   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            456789999999999999999999999999998864   57899999999999999999999999999999864   589


Q ss_pred             HHHHHHHHHc
Q 008755          536 LRRGTAREML  545 (554)
Q Consensus       536 ~~~g~~~~~~  545 (554)
                      |.+|.+++.+
T Consensus        83 Y~~g~~~~~~   92 (203)
T PF13525_consen   83 YMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.05  E-value=9.4e-06  Score=84.33  Aligned_cols=87  Identities=16%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      .+.+.+|...+.+++|+++.++++.+++++|-....|+.+|.|+.++++++.|..+|..++.++|++.++|.|++.+|..
T Consensus       486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~  565 (777)
T KOG1128|consen  486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR  565 (777)
T ss_pred             HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence            34444555555567777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHH
Q 008755          545 LGYYKEA  551 (554)
Q Consensus       545 ~~~~~~A  551 (554)
                      .++..+|
T Consensus       566 ~~~k~ra  572 (777)
T KOG1128|consen  566 LKKKKRA  572 (777)
T ss_pred             HhhhHHH
Confidence            6665554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.05  E-value=6.4e-05  Score=77.88  Aligned_cols=96  Identities=21%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-  528 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-  528 (554)
                      +.++.-+..+.++|..|++.|+|++|.+.|++||++.        +.....++++|..|.+++++.+|.+.|.+++.+. 
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            3455778899999999999999999999999999874        2335678999999999999999999999988773 


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 ------KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 ------p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                            |+--..|.+++.+|..+|++++|++
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence                  3445678999999999999999975

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5e-05  Score=76.91  Aligned_cols=82  Identities=21%  Similarity=0.166  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .....+.++|-.+.+.++|++|+..|+++|.+.|.++..|..+|.+|..+|+++.|++.|.|+|-++|++.-+--.++.+
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            45667999999999999999999999999999999999999999999999999999999999999999996665555555


Q ss_pred             HH
Q 008755          542 RE  543 (554)
Q Consensus       542 ~~  543 (554)
                      ..
T Consensus       533 ie  534 (611)
T KOG1173|consen  533 IE  534 (611)
T ss_pred             HH
Confidence            43

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.03  E-value=1.1e-05  Score=54.08  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ++..+|.+|..+|++++|++.|+++++++|+++.+++.+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444555555555555555555555555555555554444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.03  E-value=2.7e-05  Score=86.16  Aligned_cols=84  Identities=14%  Similarity=-0.039  Sum_probs=46.7

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008755          469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY  548 (554)
Q Consensus       469 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~  548 (554)
                      .+...+...|++++|+.++++++..+|.....+..+|.+|..+|+|++|++.|+++++++|+++.+++.++.++...++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            55555555566666666666665222222333333355666666666666666666666666666666555666666666


Q ss_pred             HHHh
Q 008755          549 KEAI  552 (554)
Q Consensus       549 ~~A~  552 (554)
                      ++|+
T Consensus       153 ~eAl  156 (822)
T PRK14574        153 GVVL  156 (822)
T ss_pred             HHHH
Confidence            6554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.02  E-value=4.4e-05  Score=80.37  Aligned_cols=76  Identities=20%  Similarity=0.070  Sum_probs=60.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+.++..+..+|..+...|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|+.++|.++..|.
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~  491 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW  491 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence            344456777778888888888888888888888888 4678888888888888888888888888888887776443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=7.2e-05  Score=68.50  Aligned_cols=91  Identities=19%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|.+.-.+...--....+|+.-+|++.+.+-++.-+++.++|..++..|+..++|++|.=+|++.+-++|.++-.+-+
T Consensus       114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r  193 (289)
T KOG3060|consen  114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR  193 (289)
T ss_pred             ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            34445544555444444555666666666666666666677788888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCH
Q 008755          538 RGTAREMLGYY  548 (554)
Q Consensus       538 ~g~~~~~~~~~  548 (554)
                      +|.+++-+|-.
T Consensus       194 lae~~Yt~gg~  204 (289)
T KOG3060|consen  194 LAEVLYTQGGA  204 (289)
T ss_pred             HHHHHHHHhhH
Confidence            88887776653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.01  E-value=1.4e-05  Score=53.72  Aligned_cols=42  Identities=12%  Similarity=-0.016  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA  506 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  506 (554)
                      ..++.+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578999999999999999999999999999999999998875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.01  E-value=3.8e-05  Score=66.44  Aligned_cols=82  Identities=12%  Similarity=-0.008  Sum_probs=70.7

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .++.+.+.|+.+|-++...++|++|+..|..+..++++++...+..|.||+.+++.++|..+++.+++ .|.+.. +..+
T Consensus        66 ~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~  143 (165)
T PRK15331         66 YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAK  143 (165)
T ss_pred             hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999 465433 3344


Q ss_pred             HHHH
Q 008755          539 GTAR  542 (554)
Q Consensus       539 g~~~  542 (554)
                      +.++
T Consensus       144 A~~~  147 (165)
T PRK15331        144 ALVY  147 (165)
T ss_pred             HHHH
Confidence            4443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.2e-05  Score=50.63  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      .+|+++|.+|+.+++|++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.98  E-value=5.9e-05  Score=71.79  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .+......++..|++..|++..++.|++.|.+...|..++.||...++...||.+++++-+|..++.+.+|.++..++..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            34455566788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhc
Q 008755          546 GYYKEAIE  553 (554)
Q Consensus       546 ~~~~~A~~  553 (554)
                      |+.++++.
T Consensus       237 gd~~~sL~  244 (504)
T KOG0624|consen  237 GDAENSLK  244 (504)
T ss_pred             hhHHHHHH
Confidence            99888763

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.98  E-value=2.9e-05  Score=80.39  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=83.8

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---  527 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---  527 (554)
                      ..|........++..|+.+|+|++|+..+++|++.        .|.-......+|..|..+++|++|+..|++|+.+   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45677778888999999999999999999999998        5666677788999999999999999999999987   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 -----DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 -----~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                           +|.-..++.+++.+|+.+|++++|..
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~  304 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEE  304 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence                 45556679999999999999999864

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=2.1e-05  Score=77.22  Aligned_cols=90  Identities=22%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ++.++.+.|+..|.+|++++|.+.|++||.-|..-.++++|+|..+..+|++++|+.++-+.-.+--++.++++.++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45566666777777777777777777776655555555566666666666666666555443333334555555555555


Q ss_pred             HHcCCHHHHh
Q 008755          543 EMLGYYKEAI  552 (554)
Q Consensus       543 ~~~~~~~~A~  552 (554)
                      ..+.+..+|+
T Consensus       569 e~led~aqai  578 (840)
T KOG2003|consen  569 ELLEDPAQAI  578 (840)
T ss_pred             HHhhCHHHHH
Confidence            5555555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.91  E-value=0.00012  Score=61.96  Aligned_cols=74  Identities=20%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEADCT  522 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~---------------~~~A~~~~~  522 (554)
                      +-..++...++-.++++++|++|+..|++-|+++|.++   -+++.+|.+++.+.+               ..+|...++
T Consensus        44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~  123 (142)
T PF13512_consen   44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE  123 (142)
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence            34567889999999999999999999999999999875   479999999999887               999999999


Q ss_pred             HHHHcCCCCHHH
Q 008755          523 KAINLDKKNVKA  534 (554)
Q Consensus       523 ~al~l~p~~~~~  534 (554)
                      +.++..|++..+
T Consensus       124 ~lv~~yP~S~ya  135 (142)
T PF13512_consen  124 QLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHCcCChhH
Confidence            999999998765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.90  E-value=0.00023  Score=62.03  Aligned_cols=92  Identities=25%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  535 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~  535 (554)
                      ..+...+......+..+++.++...+++.++..|+.   ..+...+|.+++..|+|++|+..|++++...|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345566677777778999999999999999999998   5678889999999999999999999999988665   4578


Q ss_pred             HHHHHHHHHcCCHHHHhc
Q 008755          536 LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~~  553 (554)
                      ++++.++..+|++++|+.
T Consensus        89 l~LA~~~~~~~~~d~Al~  106 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALA  106 (145)
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            899999999999999975

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=2.3e-05  Score=81.58  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=91.8

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ...+|-....|+.+|.++.+.++++.|..+|...+.++|++.++|+|++.+|..+++-.+|...+.+|++-+-++++.+-
T Consensus       512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      |.-.+....|.+++|++
T Consensus       592 Nymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             chhhhhhhcccHHHHHH
Confidence            99999999999999974

>TIGR00540 hemY_coli hemY protein

Probab=97.88  E-value=8e-05  Score=77.05  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=82.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      |+....+...+..+.++|++++|..+|+++.+..|++. .+....+..+++.+++++|.+.+++.++.+|+++.++..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44556677789999999999999999999999998875 46666799999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       195 ~~~~~~~d~~~a~~  208 (409)
T TIGR00540       195 EAYIRSGAWQALDD  208 (409)
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999999998864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=2.5e-05  Score=49.11  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  497 (554)
                      +..|+.+|..++..|++++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.87  E-value=2.3e-05  Score=59.23  Aligned_cols=50  Identities=28%  Similarity=0.449  Sum_probs=47.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755          505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~  554 (554)
                      ..+|++.++|++|++.++++++++|+++..++.+|.++..+|++++|+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~   51 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED   51 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH
Confidence            46789999999999999999999999999999999999999999999763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.86  E-value=1.1e-05  Score=62.06  Aligned_cols=58  Identities=29%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-C---CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLD---K-K---NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p-~---~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +...+++++|.+|..+|+|++|+.+|++++++.   + +   -..+++++|.++..+|++++|++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   67 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            446789999999999999999999999999772   1 2   25578999999999999999975

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.86  E-value=7.7e-05  Score=80.04  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      +-.++.+|.+|..+..+|+|++|..+|.+++..++++ .-.++.+|+.|...|+++.++.++++.++.+|++.+....+|
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG  383 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG  383 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            4456668888888888888888888888888888877 556777888888888888888888888888888888888888


Q ss_pred             HHHHHcC
Q 008755          540 TAREMLG  546 (554)
Q Consensus       540 ~~~~~~~  546 (554)
                      ..|...+
T Consensus       384 ~Lya~~~  390 (1018)
T KOG2002|consen  384 CLYAHSA  390 (1018)
T ss_pred             hHHHhhh
Confidence            8777664

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=3.9e-05  Score=48.16  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      +|+.+|.+|+++|+|++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.85  E-value=7e-05  Score=78.87  Aligned_cols=75  Identities=23%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             cCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          478 KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       478 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+.+++....++++.+  +|.++.+|.-+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            4566777888887774  778888999999999999999999999999999999 58899999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=7.3e-05  Score=70.73  Aligned_cols=91  Identities=18%  Similarity=0.069  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .+++.+.++|.+-+..++++-++..|++|+....   .-+++|+|+|.+....||+..|..+++-+|.-|+++.+++.|+
T Consensus       356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL  435 (478)
T KOG1129|consen  356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL  435 (478)
T ss_pred             CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence            4567788888888888888888888888887633   2467888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      |..-.+.|+.++|.
T Consensus       436 avL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  436 AVLAARSGDILGAR  449 (478)
T ss_pred             HHHHhhcCchHHHH
Confidence            88888888888875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=4.6e-05  Score=47.79  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  497 (554)
                      ++.|+.+|..+++.|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.83  E-value=4.1e-05  Score=56.91  Aligned_cols=46  Identities=28%  Similarity=0.257  Sum_probs=42.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++.|+|++|+..|+++++.+|++.++++.++.+|..+|++++|.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~   46 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE   46 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3678999999999999999999999999999999999999999974

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.83  E-value=0.00013  Score=78.46  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ++..-..++.++.++..+++-+|..|+|+.+...+..++...-+   -+..+|++|.+|..+|+|++|..+|.++++-++
T Consensus       259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            33334456789999999999999999999999999999987644   355699999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KN-VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~-~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++ .-.++.+|..|...|+++.|+.
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~  363 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKF  363 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHH
Confidence            98 8889999999999999998863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.82  E-value=7e-05  Score=82.25  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=81.8

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-------------------HHHHHHHHHHHHcCCHHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------TYYSNRAAAYLESGSFLQ  516 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~~a~~~~~~~~~~~  516 (554)
                      ....+|+....++..|..+++.+++.++...  +++..-+.+.                   .+++.+|.||-++|++++
T Consensus        57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k  134 (906)
T PRK14720         57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK  134 (906)
T ss_pred             HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence            3455778888999999988888888777666  6665555544                   899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |.+.|+++++++|+|+.++.++|..|... +.++|++
T Consensus       135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720        135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence            99999999999999999999999999999 9998875

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=7.3e-05  Score=69.85  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQEQADIAT--KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (554)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  505 (554)
                      ..+..-.-+++.++...+....  ++.+.+..  ..++++...+.|...++.|+|++|+..|+.|++....++-.-++++
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA  185 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA  185 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence            5566666666666655443222  22222222  2356788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHhc
Q 008755          506 AAYLESGSFLQAEADCTKAINL----DKKN-------------------------VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       506 ~~~~~~~~~~~A~~~~~~al~l----~p~~-------------------------~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .|+++.++|+.|++...+.++.    .|..                         .++++.++-++++.++++.|.+
T Consensus       186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e  262 (459)
T KOG4340|consen  186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE  262 (459)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence            9999999999999998887754    3421                         4466677888999999988754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.80  E-value=0.00014  Score=74.99  Aligned_cols=89  Identities=12%  Similarity=0.058  Sum_probs=77.7

Q ss_pred             HHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          465 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       465 ~~~~~~-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ..++.. +....+.|++++|..+|+++.+.+|++..+. ...+..+...|++++|++.+++.++.+|+++.++..++.+|
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344444 5566999999999999999999999985443 34589999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      .+.|++++|++
T Consensus       198 ~~~gdw~~a~~  208 (398)
T PRK10747        198 IRTGAWSSLLD  208 (398)
T ss_pred             HHHHhHHHHHH
Confidence            99999999873

>TIGR00540 hemY_coli hemY protein

Probab=97.78  E-value=0.00021  Score=73.89  Aligned_cols=91  Identities=11%  Similarity=-0.026  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYLR  537 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~~~~~  537 (554)
                      +++..+...+..+...|++++|+..++++++..|++....  ..+...++..++.+++++.++++++.+|+++  ..+..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4556666666666666666666666666666555544311  1111122223444555555555555555555  44445


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      +|.++.++|+|++|.
T Consensus       341 Lg~l~~~~~~~~~A~  355 (409)
T TIGR00540       341 LGQLLMKHGEFIEAA  355 (409)
T ss_pred             HHHHHHHcccHHHHH
Confidence            555555555555553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.76  E-value=0.00032  Score=72.26  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       477 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++++++..+++.++.+|+++..+..+|.+++..++|++|.+.++++++++|++ ..+..++.++..+|+.++|.+
T Consensus       307 ~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        307 TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence            3666666666666667788888889999999999999999999999999999875 446688999999999888864

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00081  Score=61.82  Aligned_cols=91  Identities=18%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~  531 (554)
                      .-...-+.|.++|.+++..|+..|+|++|.-||++.+-++|.++-++..+|.+++.+|   ++..|..+|.++++++|.+
T Consensus       145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            3344567899999999999999999999999999999999999999999999999777   6999999999999999988


Q ss_pred             HHHHHHHHHHHHHc
Q 008755          532 VKAYLRRGTAREML  545 (554)
Q Consensus       532 ~~~~~~~g~~~~~~  545 (554)
                      ..++|.+-.+-..+
T Consensus       225 ~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  225 LRALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888765554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00031  Score=69.15  Aligned_cols=93  Identities=16%  Similarity=-0.006  Sum_probs=85.6

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ..-.+++++.|..+-..|+.++|+++|-|.-.+--++.+++++++.+|..+.+-.+|+++|.++..+-|+++..+..+|.
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d  600 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD  600 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence            35678899999999999999999999998777777899999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      .|-+.|+..+|.+
T Consensus       601 lydqegdksqafq  613 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQ  613 (840)
T ss_pred             Hhhcccchhhhhh
Confidence            9999999888764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00018  Score=70.31  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH----------------------------------HHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----------------------------------YSN  503 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~  503 (554)
                      ..-+++...+..+|.+++..|++++|+..|+++.-+||.+...                                  |+-
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            3456888889999999999999999999999999888875422                                  444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       504 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      -+..++..++|..|+.+-+|+|+.+|++.+++..+|.++..+++.++|+
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~  354 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV  354 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence            4555667888999999999999999999999999999999999998885

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.72  E-value=0.00011  Score=64.31  Aligned_cols=68  Identities=21%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----------SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      |+.|.+.++.....||.+.+.+++=|.+++++-          -+++|+.=|++||.++|+...+++++|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999888663          37888999999999999999999999999988765

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.70  E-value=5.1e-05  Score=81.36  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...|..+|..+.+.+++.+|+..|+.+++.+|++...|..+|.+|...|+|..|++.+.+|..++|.+..+.|..+...+
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            45577799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      .+|+|++|+.
T Consensus       642 d~GkYkeald  651 (1238)
T KOG1127|consen  642 DNGKYKEALD  651 (1238)
T ss_pred             HhhhHHHHHH
Confidence            9999999864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.70  E-value=0.00087  Score=70.33  Aligned_cols=90  Identities=16%  Similarity=0.062  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      .-.++.+++.+-..|++++|+.++++||+..|..++.|...|.+|-..|++++|...+++|-++|..+...-..-+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999988887777788889


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      +.|+.++|.+
T Consensus       274 Ra~~~e~A~~  283 (517)
T PF12569_consen  274 RAGRIEEAEK  283 (517)
T ss_pred             HCCCHHHHHH
Confidence            9999999974

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.67  E-value=0.00095  Score=55.48  Aligned_cols=80  Identities=15%  Similarity=0.011  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      +.....+..+|..+...|++++|+..++++++..|+   +..+...++.+++.+|++++|++.+-.++.-..    ..|.
T Consensus        35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~----~~y~  110 (120)
T PF12688_consen   35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAETL----PRYR  110 (120)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHH
Confidence            455678999999999999999999999999999888   788888899999999999999999988876322    1666


Q ss_pred             HHHHHHH
Q 008755          538 RGTAREM  544 (554)
Q Consensus       538 ~g~~~~~  544 (554)
                      +++.++.
T Consensus       111 ra~~~ya  117 (120)
T PF12688_consen  111 RAIRFYA  117 (120)
T ss_pred             HHHHHHH
Confidence            6666553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=0.00013  Score=73.10  Aligned_cols=96  Identities=29%  Similarity=0.301  Sum_probs=85.7

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      +-+++.+.++..|+..+..+....|+.+|.++++..|.....|.+++.++++.+   +.-.|+.++-.|++++|...+++
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            346778888899999999999999999999999999999999999999988764   67789999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHhcC
Q 008755          536 LRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~~~  554 (554)
                      |+++.++..++++.+|+.+
T Consensus       449 ~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhh
Confidence            9999999999999999763

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.62  E-value=0.00048  Score=76.43  Aligned_cols=95  Identities=11%  Similarity=-0.055  Sum_probs=90.5

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|+-.+....+++.+...|++.+|++.+++.+...|.|..++..+|.++...|.+.+|++.++++..++|++..+.+.
T Consensus       410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~  489 (822)
T PRK14574        410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA  489 (822)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence            45677788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      ++.++..++++++|.
T Consensus       490 ~~~~al~l~e~~~A~  504 (822)
T PRK14574        490 QAETAMALQEWHQME  504 (822)
T ss_pred             HHHHHHhhhhHHHHH
Confidence            999999999999984

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.59  E-value=0.00013  Score=69.50  Aligned_cols=88  Identities=22%  Similarity=0.198  Sum_probs=77.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      .-+...+...|.++-.+.+++.+|++.++|..|...++.|+.+|..+..+|..++.+...+|+..+|..+|+.+|+|.|+
T Consensus       118 DCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  118 DCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence            33444555667888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHH
Q 008755          531 NVKAYLRR  538 (554)
Q Consensus       531 ~~~~~~~~  538 (554)
                      +.+..-.+
T Consensus       198 ~~ELkK~~  205 (536)
T KOG4648|consen  198 NIELKKSL  205 (536)
T ss_pred             cHHHHHHH
Confidence            77654433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.59  E-value=0.00024  Score=73.27  Aligned_cols=92  Identities=20%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ...-.|.-+|..+...++|++|+.+|+.|+.++|+|.++|..++....++++|+.....-.+.+++.|.+...|+..+.+
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs  152 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA  152 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            45567888899999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      +...|++..|..
T Consensus       153 ~~L~g~y~~A~~  164 (700)
T KOG1156|consen  153 QHLLGEYKMALE  164 (700)
T ss_pred             HHHHHHHHHHHH
Confidence            998888888753

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.58  E-value=4.1e-05  Score=76.49  Aligned_cols=116  Identities=17%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008755          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ  516 (554)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~  516 (554)
                      +...+.......+...+..++..+|+.+..+-+++.++++.++|..|+..+.+||+++|....+|+.+|.+.+.+++|.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            33344444444555566677778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHh
Q 008755          517 AEADCTKAINLDKKNVKAYLRRGTARE--MLGYYKEAI  552 (554)
Q Consensus       517 A~~~~~~al~l~p~~~~~~~~~g~~~~--~~~~~~~A~  552 (554)
                      |+.++++...+.|+++++.-.+-.|-.  ...+++.|+
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999998776666533  333455543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.00023  Score=69.37  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      +..-.....+.+.+..|  ++++|...|+...+..+..+..++.++.|++++|+|++|...++++++.+|+++.++.|+.
T Consensus       163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            44444444555555555  6999999999987777788899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHH
Q 008755          540 TAREMLGYYKE  550 (554)
Q Consensus       540 ~~~~~~~~~~~  550 (554)
                      .+...+|+..+
T Consensus       243 v~~~~~gk~~~  253 (290)
T PF04733_consen  243 VCSLHLGKPTE  253 (290)
T ss_dssp             HHHHHTT-TCH
T ss_pred             HHHHHhCCChh
Confidence            99999888733

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.0011  Score=62.92  Aligned_cols=92  Identities=28%  Similarity=0.342  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      -...++..+-++|.+..+|++|++.-++...+.+..     +..|-.+++.+....+.++|...+.+|++-+|+...+-.
T Consensus       139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi  218 (389)
T COG2956         139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI  218 (389)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence            445678888999999999999999999999988764     446778899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++...|+|+.|++
T Consensus       219 ~lG~v~~~~g~y~~AV~  235 (389)
T COG2956         219 ILGRVELAKGDYQKAVE  235 (389)
T ss_pred             hhhHHHHhccchHHHHH
Confidence            99999999999999975

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00022  Score=67.55  Aligned_cols=134  Identities=10%  Similarity=0.076  Sum_probs=97.6

Q ss_pred             eeEEEeccCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 008755          417 SVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN  496 (554)
Q Consensus       417 g~~~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  496 (554)
                      +-.+...+++-..++..++..|...+.+.....   +....+..+.+.++.--.|.-||..++++-|+.+|++.|++.-.
T Consensus       280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~  356 (478)
T KOG1129|consen  280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ  356 (478)
T ss_pred             hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence            334444555556666666666555444333322   22234445666777777788888889999999999999999888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       497 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++.|.|+|.|-+.-++|+-++..+++|+..--   .-...|||+|.+....|++.-|.+
T Consensus       357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r  416 (478)
T KOG1129|consen  357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR  416 (478)
T ss_pred             ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence            899999999999999999999999999988743   235679999998888888877654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.55  E-value=0.0014  Score=57.37  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRG  539 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g  539 (554)
                      ..+..+.+++.+...|++.||..+|++++. +--+++..+..++++.+..+++.+|...+++..+.+|.  .+..+..+|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            345677788899999999999999998885 34456777788888888888888888888888888875  455677777


Q ss_pred             HHHHHcCCHHHHh
Q 008755          540 TAREMLGYYKEAI  552 (554)
Q Consensus       540 ~~~~~~~~~~~A~  552 (554)
                      .+|..+|++++|.
T Consensus       168 R~laa~g~~a~Ae  180 (251)
T COG4700         168 RTLAAQGKYADAE  180 (251)
T ss_pred             HHHHhcCCchhHH
Confidence            7788888877664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.51  E-value=0.00014  Score=64.99  Aligned_cols=87  Identities=14%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             HhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      ..++..+.+....+|+.++.++.+|.-+...|+|+.|.+.|+..+++||.+--++.|+|..++--|+|+-|.+++.+-.+
T Consensus        82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            34556667777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHH
Q 008755          527 LDKKNVK  533 (554)
Q Consensus       527 l~p~~~~  533 (554)
                      -||+++-
T Consensus       162 ~D~~DPf  168 (297)
T COG4785         162 DDPNDPF  168 (297)
T ss_pred             cCCCChH
Confidence            9998754

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.50  E-value=0.00051  Score=70.91  Aligned_cols=96  Identities=9%  Similarity=0.001  Sum_probs=89.9

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|+..+.+-..|..+...|+-++|..+...+++.|+.....|--+|.++..-++|++|+.+|+.|+.++|+|-+.+.
T Consensus        34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr  113 (700)
T KOG1156|consen   34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR  113 (700)
T ss_pred             HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHh
Q 008755          537 RRGTAREMLGYYKEAI  552 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~  552 (554)
                      -++....++++++...
T Consensus       114 DlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen  114 DLSLLQIQMRDYEGYL  129 (700)
T ss_pred             HHHHHHHHHHhhhhHH
Confidence            9999999999987643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.46  E-value=0.0016  Score=53.47  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      +.+.+.+..-|+++.+|+++++.+.-+|+.++|++.+++|+++.-..    ..+|.++|.+|..+|+.+.|..+|+.+-+
T Consensus        64 E~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen   64 ELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            34444455567899999999999999999999999999999996543    45799999999999999999999999998


Q ss_pred             cCCCCHH
Q 008755          527 LDKKNVK  533 (554)
Q Consensus       527 l~p~~~~  533 (554)
                      +...+..
T Consensus       144 LGS~FAr  150 (175)
T KOG4555|consen  144 LGSKFAR  150 (175)
T ss_pred             hCCHHHH
Confidence            8776544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00094  Score=65.40  Aligned_cols=91  Identities=16%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ..+.-|+--+...+..++|+.|+.+-+|+|+.+|++..+|...|.++..+++.++|+-.|+.|+.+.|..-+.|-.+-.+
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34566888888888899999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      |...|++.||.
T Consensus       378 YLA~~~~kEA~  388 (564)
T KOG1174|consen  378 YLAQKRFKEAN  388 (564)
T ss_pred             HHhhchHHHHH
Confidence            99999998885

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.42  E-value=0.00092  Score=69.05  Aligned_cols=103  Identities=16%  Similarity=0.075  Sum_probs=84.4

Q ss_pred             hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      +..+.+..+.+|++-++|+..-...+.+.+++.|..+|.|+....|. ..+|+..+.....+++.++|+..++++|+..|
T Consensus       604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp  682 (913)
T KOG0495|consen  604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFP  682 (913)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            34444455566777778887777778888888888888888777664 47788888888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.+.|+.+|+++.++++.+.|.+
T Consensus       683 ~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  683 DFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             chHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999999999999988753

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00086  Score=63.62  Aligned_cols=68  Identities=18%  Similarity=0.113  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~  546 (554)
                      +.++-+..++.-|+.||++.+-|..+|.+|+.++++..|...|.+|+++.|+|++.+..+|.+++.+.
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            45566777888899999999999999999999999999999999999999999999999999987664

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.38  E-value=0.00055  Score=69.10  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ..+.+....+|.+...+...+..+++.++|+.|+...++++++.|++...|+.++.+|.++|+|++|+..+.-+-
T Consensus       221 ~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  221 RLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            344445566788899999999999999999999999999999999999999999999999999999998776443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10941 hypothetical protein; Provisional

Probab=97.38  E-value=0.0039  Score=59.66  Aligned_cols=79  Identities=10%  Similarity=0.058  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ...+.++-..+.+.++++.|+.+.+..+.++|+++.-+..+|.+|++++.+..|..+++.-++..|+.+.+..-+-.+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            4456667778999999999999999999999999999999999999999999999999999999999998876665544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.37  E-value=0.00092  Score=72.15  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      ...-+.....+++|++|++..+|+++.||+|..++..+|.++..+++ .++|.+.|-.|.+++|++.-+|-.++..|...
T Consensus         5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~   84 (1238)
T KOG1127|consen    5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY   84 (1238)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence            34456677778889999999999999999988888889999988887 88999999999999999888888888887663

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.37  E-value=0.0028  Score=58.60  Aligned_cols=93  Identities=22%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAI  525 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al  525 (554)
                      .+-..++++.+|..+++.|+|++|+..|++.++..|+++   .+++.+|.+++.+.           ...+|+..++..+
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            445678899999999999999999999999999999864   58999999987653           2568999999999


Q ss_pred             HcCCCCHHH-----------------HHHHHHHHHHcCCHHHHh
Q 008755          526 NLDKKNVKA-----------------YLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       526 ~l~p~~~~~-----------------~~~~g~~~~~~~~~~~A~  552 (554)
                      +..|++..+                 -+..|..|.+.|+|..|+
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            999987432                 233566677777776664

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.34  E-value=0.0054  Score=58.28  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC------------------HHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS------------------FLQAEA  519 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~------------------~~~A~~  519 (554)
                      +-...+.+.+|..+++.++|++|+..|++.++.+|++   ..+++.+|.+++.+++                  -.+|+.
T Consensus        66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            4455667899999999999999999999999999886   4678999998765541                  357889


Q ss_pred             HHHHHHHcCCCCHHH---H--------------HHHHHHHHHcCCHHHHh
Q 008755          520 DCTKAINLDKKNVKA---Y--------------LRRGTAREMLGYYKEAI  552 (554)
Q Consensus       520 ~~~~al~l~p~~~~~---~--------------~~~g~~~~~~~~~~~A~  552 (554)
                      .+++.++..|+...+   .              +..|.-|.+.|+|..|+
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~  195 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV  195 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            999999999987432   1              23455566666666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.33  E-value=0.0004  Score=43.44  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      +|+.+|.+|.++|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.29  E-value=0.00084  Score=63.17  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      +.+....+.+....+.|+.++|...|+.|+.++|.+++++...|......++.-+|-++|-+||.++|.|.+++-++...
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34445556677788899999999999999999999999999999999999999999999999999999999999887654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.28  E-value=0.0011  Score=72.99  Aligned_cols=93  Identities=11%  Similarity=-0.056  Sum_probs=83.8

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------  532 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~------  532 (554)
                      -.|.+..+|..+...+...+++++|+..++.+++.+|+....|+.+|.++++.+++.++...  .++.+.+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            35788999999999999999999999999999999999999999999999999988887776  7777766665      


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 -------------KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 -------------~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                   .+++.+|.||.++|++++|.+
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~  137 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKG  137 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence                         899999999999999999864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.27  E-value=0.0019  Score=68.11  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=75.2

Q ss_pred             hhcccccccccChhhHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAIS--FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      +...+......+|+.......+|..+.+.|+..-|..  .+..++++||.+.++|+++|.++.++|+.++|..+|+.|++
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            3344455566678999999999999999999988888  99999999999999999999999999999999999999999


Q ss_pred             cCCCCH
Q 008755          527 LDKKNV  532 (554)
Q Consensus       527 l~p~~~  532 (554)
                      +++.++
T Consensus       783 Le~S~P  788 (799)
T KOG4162|consen  783 LEESNP  788 (799)
T ss_pred             hccCCC
Confidence            987654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.27  E-value=0.0036  Score=58.23  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AY  535 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~  535 (554)
                      ..+..|++.|...++.|+|++|+..|++.....|..   ..+...++.++++.++|++|+...++=+++.|.++.   ++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            357789999999999999999999999999887764   578899999999999999999999999999997654   67


Q ss_pred             HHHHHHHHH
Q 008755          536 LRRGTAREM  544 (554)
Q Consensus       536 ~~~g~~~~~  544 (554)
                      |.+|.++..
T Consensus       112 YlkgLs~~~  120 (254)
T COG4105         112 YLKGLSYFF  120 (254)
T ss_pred             HHHHHHHhc
Confidence            778887643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.23  E-value=0.0007  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  497 (554)
                      ++.|+.+|..+.+.|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3579999999999999999999999999999954

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.0015  Score=61.34  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +.+..+|++|++++.--.+.+|.+-..++.+|.||+...+|..|..+|++...+.|...+..+..+..+++.+.+.+|++
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46677888888888888888888888888899999999999999999999888888888888888888888888888763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.12  E-value=0.0016  Score=63.60  Aligned_cols=113  Identities=10%  Similarity=-0.014  Sum_probs=82.4

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHH-HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 008755          423 RHGGDRFLLDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY  501 (554)
Q Consensus       423 ~~~~d~~ll~~a~~le~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  501 (554)
                      ...+|..+..++..+-....... ...+...+.......+..+..+..++.++++.|+|++|...++++++.+|++++.+
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            44578899999888765543321 11122222222233356778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHH
Q 008755          502 SNRAAAYLESGSF-LQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       502 ~~~a~~~~~~~~~-~~A~~~~~~al~l~p~~~~~~  535 (554)
                      .|+..+...+|+- +.+.+.+.+....+|+++..-
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            9999999999988 667778888888999877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.09  E-value=0.004  Score=65.46  Aligned_cols=83  Identities=17%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ..+.+..+..++...|++++|++++++.-..-.+...++..+|.+++++|++++|...|++.|+.||+|...|..+..++
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            34566777888899999999999999988888888889999999999999999999999999999999999998888887


Q ss_pred             HHc
Q 008755          543 EML  545 (554)
Q Consensus       543 ~~~  545 (554)
                      ...
T Consensus        83 g~~   85 (517)
T PF12569_consen   83 GLQ   85 (517)
T ss_pred             hhh
Confidence            433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.08  E-value=0.0064  Score=52.88  Aligned_cols=84  Identities=25%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          469 EKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------NATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       469 ~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      ..+......++.+.++..+++++.+-..                      ...+...++..+...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            3344455556666666666666644211                      123445555566666677777777777777


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          527 LDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       527 l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ++|-+-.++..+-.+|..+|+..+|+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~  116 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEAL  116 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            77766666666677777777766665

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.0065  Score=57.05  Aligned_cols=77  Identities=13%  Similarity=0.048  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      -.+.++|=+|..++.+|+|++|...|..+++-.|+.   +++++.+|.+...+++-++|...+++.++..|+...+....
T Consensus       176 ~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         176 YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            446677779999999999999999999999987764   78999999999999999999999999999999988775543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.07  E-value=0.0017  Score=63.51  Aligned_cols=91  Identities=29%  Similarity=0.330  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC--C-
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNN----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKK--N-  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~--~-  531 (554)
                      ..+..+.+.++.+.+ .++++|+.+|++|+++-  -+.    ..++.++|.+|... +++++|++.|++|+++...  . 
T Consensus        73 ~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            445566666666554 49999999999999872  122    45789999999988 9999999999999998431  1 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ...+...+.++..+++|++|++
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~  176 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIE  176 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence               3456788999999999999975

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.07  E-value=0.00054  Score=66.95  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC--
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD----KK--  530 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~--  530 (554)
                      ...++-++||.|+-.|+|++|+..-+.-|++...+      -.++.|+|.||..+|+++.|+++|.+++.+.    -.  
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            34556677777777777777777766666654332      2467777777777777777777777655442    11  


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+.-|-+|.+|..+++++.|+.
T Consensus       274 EAQscYSLgNtytll~e~~kAI~  296 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAIT  296 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            23345666777777777666653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00097  Score=60.67  Aligned_cols=75  Identities=17%  Similarity=0.061  Sum_probs=69.0

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      +..++..+|..+..|.+++.++++..+++.......++++++|+...+++.+|.+.++...|.+|+..+++|..+
T Consensus        33 y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   33 YSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            344455677888999999999999999999999999999999999999999999999999999999999999776

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.04  E-value=0.0057  Score=59.95  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------------------------HhcCCCHHHHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI-------------------------------KLNGNNATYYSNRAAAYLE  510 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~~~~~~~~~a~~~~~  510 (554)
                      .++......+..+.+.|++++|.+...+++                               +..|+++..++.+|..+++
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k  340 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK  340 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            335555555666666677777766666555                               4578889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       511 ~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+.|.+|...++.|+++.| +...+..+|.++.++|+.++|.+
T Consensus       341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence            9999999999999999987 47788899999999999888753

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.03  E-value=0.0035  Score=43.48  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      +.++.+|..++++|+|++|..+++.+|+++|+|.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3567788888888888888888888888888888876555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.0055  Score=56.10  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .....+.+..++++..++|-+++++....|+.+|.|..+|+.+|.++....+-++|..++.++|+++|.-..+..
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            445668889999999999999999999999999999999999999999999999999999999999997655543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.00053  Score=65.69  Aligned_cols=85  Identities=21%  Similarity=0.062  Sum_probs=78.4

Q ss_pred             HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ...++..+...+..+|..+..+..++.++++.+++.+|+..|..|++++|+...-|-.++.+...+++|++|..++..++
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~  209 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC  209 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence            44456677778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCC
Q 008755          526 NLDKK  530 (554)
Q Consensus       526 ~l~p~  530 (554)
                      +++-+
T Consensus       210 kld~d  214 (377)
T KOG1308|consen  210 KLDYD  214 (377)
T ss_pred             hcccc
Confidence            99754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.005  Score=58.84  Aligned_cols=94  Identities=17%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      .|.+.-++..--.++|.+|+...-...++|.+-. +++.   +.+.-.++.++.+.|-|++|.+..++++++|+.+..+.
T Consensus       133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~  212 (491)
T KOG2610|consen  133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS  212 (491)
T ss_pred             CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence            4566667777777788888888888888888876 6665   45556677888888889999999999999999888888


Q ss_pred             HHHHHHHHHcCCHHHHhc
Q 008755          536 LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~~  553 (554)
                      ..++.++.+.+++.++++
T Consensus       213 Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  213 HAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             HHHHHHHHhcchhhhHHH
Confidence            888888888888888764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.0037  Score=57.76  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      ..+.....+.+..+..+++|.+|...|++.++.||.++.+.++.|.|++.+|+..+|++.+++++++.|..
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            45667788889999999999999999999999999999999999999999999999999999999999964

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.77  E-value=0.035  Score=44.98  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=66.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC
Q 008755          470 KGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK  530 (554)
Q Consensus       470 ~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~  530 (554)
                      .|...++.|-|++|...|++|.+..-.            +.-++..++.++..+|+|++++...+++|..       +.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            456677889999999999999987432            2346778888999999999999999999965       333


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 ----NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ----~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          +..+.++++.++..+|+.++|+.
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~  121 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALK  121 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHH
Confidence                35577899999999999999974

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.75  E-value=0.0078  Score=58.79  Aligned_cols=91  Identities=21%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----  530 (554)
                      .-+..+.++|..+... +++++|+++|++|+++-.  +.    ...+.+.|.++.++++|++|++.|++.....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4577899999999998 999999999999998732  21    457889999999999999999999999875322    


Q ss_pred             --CH-HHHHHHHHHHHHcCCHHHHh
Q 008755          531 --NV-KAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       531 --~~-~~~~~~g~~~~~~~~~~~A~  552 (554)
                        +. ..++..+.++...|+...|.
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~  216 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAAR  216 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHH
Confidence              12 24566788888888887764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.019  Score=54.46  Aligned_cols=87  Identities=18%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-----------------------  523 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-----------------------  523 (554)
                      -+..+......+++.+|...|..+++.+|++..+...++.||...|+.++|...+..                       
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            445577778888888888888888888888888888888888888888766665543                       


Q ss_pred             -----------HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          524 -----------AINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       524 -----------al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                 .+.-+|++.++-+.++..|...|++++|.+
T Consensus       217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale  257 (304)
T COG3118         217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE  257 (304)
T ss_pred             hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                       222389999999999999999999999975

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0061  Score=58.31  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      -++-.|.+++-+.+..|+|..|+..+.+++.++|.+..+|+.-|.|+++++++++|..+|+..+.++-+
T Consensus       117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            457789999999999999999999999999999999999999999999999999999999999887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.0055  Score=56.68  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH----Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI----KLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      ++.++.....+|...++.||.+.|..+|++.=    .++  .+.-.+..+.+.+|.-.++|.+|...+.+.++.||.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            35778888999999999999999999998433    222  234557788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +.++++.|+..+|+..+|++
T Consensus       288 a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHH
Confidence            99999999999999999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.71  E-value=0.004  Score=61.04  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNV  532 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~~~  532 (554)
                      .++.++||++.-.|+++.|+++|++.+.+    ...  .+...|.+|..|.-+++|++||.+.++-|.+..      ...
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            56889999999999999999999997754    322  345568899999999999999999998776632      346


Q ss_pred             HHHHHHHHHHHHcCCHHHHh
Q 008755          533 KAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~  552 (554)
                      .++|-+|.++..+|..++|+
T Consensus       316 RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHH
Confidence            68999999999999999886

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.71  E-value=0.013  Score=51.00  Aligned_cols=65  Identities=11%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ...++..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|+..|++..+.
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34556677778889999999999999999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.70  E-value=0.044  Score=48.29  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..++..+..+++..+..+++.+|...+++..+.+|.  .++....+|.+|...|++++|...++.++...|+ +++...+
T Consensus       121 A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y  199 (251)
T COG4700         121 AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY  199 (251)
T ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence            367788888999999999999999999999998886  4556677788888999999999999999998885 7777888


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      +..+.++|+.++|.
T Consensus       200 ~e~La~qgr~~ea~  213 (251)
T COG4700         200 AEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHhcchhHHH
Confidence            88888999877764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.68  E-value=0.0033  Score=38.77  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      +++++|.++.++|++++|++.+++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.0059  Score=58.76  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ++.+.|  +|-++|+.|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+|.+...++-+ .|-....+++++.-
T Consensus        57 ~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   57 DSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence            345555  577899999999999999998887777788999999999999999999988877543 23223344555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.54  E-value=0.0048  Score=39.13  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          501 YSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       501 ~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      |.++|.+|.++|+|++|++.|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.014  Score=59.99  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=61.3

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ......|++..++...-.++.+.++|++|+...++-....-.+ ...+..+.|.|++++.++|+..++   -+++.....
T Consensus        37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l  112 (652)
T KOG2376|consen   37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL  112 (652)
T ss_pred             HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHH
Confidence            3344446677777777777777788888774433322111111 222567778888888888888777   555666667


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ...++.+++++++|++|+.
T Consensus       113 l~L~AQvlYrl~~ydeald  131 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALD  131 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHH
Confidence            7777888888888887753

>smart00028 TPR Tetratricopeptide repeats

Probab=96.43  E-value=0.0047  Score=37.21  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      .+|+++|.+++.++++++|+.+++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            34566666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.41  E-value=0.0068  Score=38.42  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~  493 (554)
                      ++.++|+.+.+.|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999996654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.28  E-value=0.043  Score=57.26  Aligned_cols=89  Identities=11%  Similarity=0.004  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....|+...+....+++.++|+.+++++|+..|++...|..+|+++.++++.+.|-..|...++.-|.....|..++..-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            44567777777777777777777777777777777777777777777777777777777777777777776666666666


Q ss_pred             HHcCCHHHH
Q 008755          543 EMLGYYKEA  551 (554)
Q Consensus       543 ~~~~~~~~A  551 (554)
                      ...|..-.|
T Consensus       730 Ek~~~~~rA  738 (913)
T KOG0495|consen  730 EKDGQLVRA  738 (913)
T ss_pred             HHhcchhhH
Confidence            655554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.12  Score=48.42  Aligned_cols=87  Identities=16%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          465 EIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       465 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ..+.++++.|.+    .+++.+|...|+..-+.-|-.+...+..+.|++.+++|++|...++.+|..++++++++-|+-.
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            344444444433    3456677777777666555556667777777777777777777777777777777777777766


Q ss_pred             HHHHcCCHHHH
Q 008755          541 AREMLGYYKEA  551 (554)
Q Consensus       541 ~~~~~~~~~~A  551 (554)
                      +-..+|.-.++
T Consensus       250 ~a~~~Gkd~~~  260 (299)
T KOG3081|consen  250 LALHLGKDAEV  260 (299)
T ss_pred             HHHHhCCChHH
Confidence            66666665443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.24  E-value=0.009  Score=36.72  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  497 (554)
                      ++++.+|.++.+.|++++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999974

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.23  E-value=0.11  Score=45.05  Aligned_cols=83  Identities=11%  Similarity=-0.200  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..+.+......+.++.+++...+...--+.|+.+++-..-|..+...++|.+|+..++...+-.|.++.+--.++.|++.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            33444444445555555555555554455555555555555555555555555555555555555555444445555554


Q ss_pred             cCC
Q 008755          545 LGY  547 (554)
Q Consensus       545 ~~~  547 (554)
                      +++
T Consensus        91 ~~D   93 (160)
T PF09613_consen   91 LGD   93 (160)
T ss_pred             cCC
Confidence            444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.15  E-value=0.019  Score=60.18  Aligned_cols=91  Identities=18%  Similarity=0.030  Sum_probs=75.3

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      ....|+.+-.++..|..+..+|+.++|++.|+++++.....    .-.++.++.++..+.+|++|..++.+.++.+. +.
T Consensus       260 ~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WS  338 (468)
T PF10300_consen  260 LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WS  338 (468)
T ss_pred             HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cH
Confidence            34467888899999999999999999999999999654433    23678899999999999999999999998754 44


Q ss_pred             HH--HHHHHHHHHHcCCH
Q 008755          533 KA--YLRRGTAREMLGYY  548 (554)
Q Consensus       533 ~~--~~~~g~~~~~~~~~  548 (554)
                      ++  .|..|.|+..+++.
T Consensus       339 ka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHHHHHhhccc
Confidence            44  45568899999988

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.13  E-value=0.036  Score=43.50  Aligned_cols=65  Identities=22%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCC
Q 008755          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY  547 (554)
Q Consensus       483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~  547 (554)
                      .+..+++.++.+|++..+.+.+|..++..|+|++|++.+-++++.++++  ..+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556777777788888888888888888888888888888877777655  3444444444444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.12  E-value=0.034  Score=59.98  Aligned_cols=93  Identities=12%  Similarity=-0.016  Sum_probs=79.8

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|+..-+..-.|..+++.|++++|..+++..-...+++-..+..+-.||..++++++|...|++++..+|. -+..+
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~  114 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY  114 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence            34556776777778899999999999998887776777778888888999999999999999999999999998 88888


Q ss_pred             HHHHHHHHcCCHHH
Q 008755          537 RRGTAREMLGYYKE  550 (554)
Q Consensus       537 ~~g~~~~~~~~~~~  550 (554)
                      .+-++|.+.+.|.+
T Consensus       115 ~lFmayvR~~~yk~  128 (932)
T KOG2053|consen  115 HLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.11  E-value=0.0084  Score=54.38  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      ...+.++.+.|.+.|++++++.|++..-|+.+|....+.|+++.|.+.|++.++++|++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999999999999999999999999999999999999999764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.98  E-value=0.038  Score=44.48  Aligned_cols=83  Identities=14%  Similarity=0.290  Sum_probs=65.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHH
Q 008755          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      ++..++.+|++-+|++..+..+...+++.   ..+..-|.+++++.           -+..+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56788999999999999999999888765   44555566654332           15678999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHh
Q 008755          536 LRRGTAREMLGYYKEAI  552 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~  552 (554)
                      |.+|.=+.....|++++
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            99988776666677664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.052  Score=50.63  Aligned_cols=110  Identities=9%  Similarity=-0.033  Sum_probs=81.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHH-HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008755          425 GGDRFLLDTVQNMYASLQEQA-DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN  503 (554)
Q Consensus       425 ~~d~~ll~~a~~le~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  503 (554)
                      .+|..+.++++.+-....... ...+.-.+..-.++.+..+..+.-++.+.+..++|++|...++.+|..++++++.+.|
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            357777778887765543222 2222222333334455677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHH-HHHHHcCCCCHHH
Q 008755          504 RAAAYLESGSFLQAEADC-TKAINLDKKNVKA  534 (554)
Q Consensus       504 ~a~~~~~~~~~~~A~~~~-~~al~l~p~~~~~  534 (554)
                      +-.+-..+|+-.++...+ .+....+|.++-.
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999999876666554 6666667776543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=0.027  Score=57.97  Aligned_cols=88  Identities=14%  Similarity=0.106  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..++..-+.+.++++|++|+....|.+...|++..++...-.|+.++++|++|+.+.++-..+.-.+ -.+|..+.|+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence            5666677788899999999999999999999999999999999999999999996555433322222 223799999999


Q ss_pred             cCCHHHHhc
Q 008755          545 LGYYKEAIE  553 (554)
Q Consensus       545 ~~~~~~A~~  553 (554)
                      +++.++|+.
T Consensus        92 lnk~Dealk  100 (652)
T KOG2376|consen   92 LNKLDEALK  100 (652)
T ss_pred             cccHHHHHH
Confidence            999999975

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.91  E-value=0.027  Score=62.70  Aligned_cols=89  Identities=10%  Similarity=-0.009  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      +...|..+...+.+.|++++|++.+++. ...| +...|..+...+...|+++.|...+++.++++|++...|..+..+|
T Consensus       461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y  538 (697)
T PLN03081        461 RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY  538 (697)
T ss_pred             CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence            3456777888999999999999998764 2344 4567999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      .+.|++++|.+
T Consensus       539 ~~~G~~~~A~~  549 (697)
T PLN03081        539 NSSGRQAEAAK  549 (697)
T ss_pred             HhCCCHHHHHH
Confidence            99999999974

>smart00028 TPR Tetratricopeptide repeats

Probab=95.88  E-value=0.013  Score=35.16  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~  497 (554)
                      ..++.+|..++..+++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03077 Protein ECB2; Provisional

Probab=95.86  E-value=0.048  Score=62.35  Aligned_cols=89  Identities=11%  Similarity=0.058  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      +...|..+...+.+.|++++|.+.+++. ...|+ ...|..+-.++...++.+.+....++.++++|++...|..++.+|
T Consensus       624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        624 NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            4467788888899999999999998874 35665 567777777777888899999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ...|+|++|.+
T Consensus       702 a~~g~~~~a~~  712 (857)
T PLN03077        702 ADAGKWDEVAR  712 (857)
T ss_pred             HHCCChHHHHH
Confidence            99999999864

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.84  E-value=0.047  Score=37.85  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  505 (554)
                      +.++.++..+++.|+|++|..+.+++|+.+|+|..+..-..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            35788899999999999999999999999999987765543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.82  E-value=0.034  Score=56.45  Aligned_cols=97  Identities=11%  Similarity=-0.046  Sum_probs=67.4

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------------------------NATYYSNRAAAYL  509 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------------~~~~~~~~a~~~~  509 (554)
                      ++.+.+|+-+.+|.-++...  .....+|+++|+|+++....                         ...+...+|+|..
T Consensus       193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar  270 (539)
T PF04184_consen  193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR  270 (539)
T ss_pred             HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence            33444556666665554432  23455666666666643110                         1234577899999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          510 ESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       510 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++|+.+||++.++..++.+|.  +...++++-.+|..+++|.++.+
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999998875  56689999999999999988753

The molecular function of this protein is uncertain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.072  Score=51.58  Aligned_cols=82  Identities=12%  Similarity=0.024  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      .+....++...+..-.|++|++.|++.|.-+|+......+++.||+++.-|+-+.+.+.--++..|++.-+...++..++
T Consensus       151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f  230 (557)
T KOG3785|consen  151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF  230 (557)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence            35566677788888899999999999999999998889999999999999999999999999999999988887776665


Q ss_pred             Hc
Q 008755          544 ML  545 (554)
Q Consensus       544 ~~  545 (554)
                      ++
T Consensus       231 Rl  232 (557)
T KOG3785|consen  231 RL  232 (557)
T ss_pred             hh
Confidence            54

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.71  E-value=0.1  Score=39.07  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ..+....+.|..++++++.++|+..++++++..++..+.   +-.+..+|...|+|++.+++.-+=+++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678889999999999999999999999998876654   455677888999999999887665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.71  E-value=0.052  Score=53.70  Aligned_cols=88  Identities=17%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+..+......|+|..|++++.+.-.+. |..          +-+-..+..||+++++-+-|+...-+.|-++|.+...
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn  264 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN  264 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence            33444444444555555555555544332 221          1245678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+.++..+.+|.+|-+
T Consensus       265 HLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  265 HLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.70  E-value=0.11  Score=47.57  Aligned_cols=88  Identities=24%  Similarity=0.269  Sum_probs=73.4

Q ss_pred             HHHHHHH-HHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Q 008755          466 IAKEKGN-QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGT  540 (554)
Q Consensus       466 ~~~~~g~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~g~  540 (554)
                      .....+. .+...+++++|+..|.+++..+|   .....+..++..+...+++++++..+.++++..+. ....+..++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
T COG0457         131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL  210 (291)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence            3444444 78899999999999999988877   45666777777788889999999999999999998 6899999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      .+...+++++|+.
T Consensus       211 ~~~~~~~~~~a~~  223 (291)
T COG0457         211 LYLKLGKYEEALE  223 (291)
T ss_pred             HHHHcccHHHHHH
Confidence            9999988888764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.11  Score=49.03  Aligned_cols=77  Identities=16%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ....++=..+.+.++++.|..+-++.+.++|+++.-+..+|.+|.+++.+.-|+++++..++.-|+.+.+-..+...
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34455566788899999999999999999999999999999999999999999999999999999998887665544

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.38  E-value=0.16  Score=58.46  Aligned_cols=87  Identities=18%  Similarity=0.156  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTA  541 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~g~~  541 (554)
                      ..|..+...|.+.|++++|+..|++..+.  .|+ ...|+.+...|.+.|++++|++.++++.+.. +.+...|..+..+
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a  693 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA  693 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34444444455555555555555544433  232 3344555555555555555555555555442 1234455555555


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      |.+.|++++|+
T Consensus       694 y~k~G~~eeA~  704 (1060)
T PLN03218        694 CSNAKNWKKAL  704 (1060)
T ss_pred             HHhCCCHHHHH
Confidence            55555555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.32  E-value=0.17  Score=58.24  Aligned_cols=87  Identities=10%  Similarity=-0.014  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTA  541 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~~~~~~g~~  541 (554)
                      ..|..+-..|.+.|++++|++.|++..+.+ +.+...|+.+...|.+.|++++|+..|++..+.  .| +...|..+..+
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a  658 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDV  658 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence            344444445555555555555555555443 223445555555555555555555555555544  23 24445555555


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      |.+.|++++|+
T Consensus       659 ~~k~G~~eeA~  669 (1060)
T PLN03218        659 AGHAGDLDKAF  669 (1060)
T ss_pred             HHhCCCHHHHH
Confidence            55555555554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.27  E-value=0.24  Score=45.34  Aligned_cols=91  Identities=27%  Similarity=0.305  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      .....+...+..+...+++++|+..+.++++..+. ....+..++.++...+++++|+..+.+++...|.....++.++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL  244 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence            34555666666677888999999999999988888 68888889999988889999999999999988887777777777


Q ss_pred             HHHHcCCHHHHh
Q 008755          541 AREMLGYYKEAI  552 (554)
Q Consensus       541 ~~~~~~~~~~A~  552 (554)
                      .+...+.++++.
T Consensus       245 ~~~~~~~~~~~~  256 (291)
T COG0457         245 LLLELGRYEEAL  256 (291)
T ss_pred             HHHHcCCHHHHH
Confidence            777666566654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.25  E-value=0.11  Score=57.99  Aligned_cols=90  Identities=10%  Similarity=-0.050  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRR  538 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~  538 (554)
                      .+...|..+...|.+.|++++|+..|++..+.  .| +...|..+..++.+.+++++|.+.+++.++.. +.+...+..+
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence            35567888888888888888888888877653  33 34566666677777777777777777776664 3445556666


Q ss_pred             HHHHHHcCCHHHHh
Q 008755          539 GTAREMLGYYKEAI  552 (554)
Q Consensus       539 g~~~~~~~~~~~A~  552 (554)
                      ...|.+.|++++|.
T Consensus       367 i~~y~k~G~~~~A~  380 (697)
T PLN03081        367 VDLYSKWGRMEDAR  380 (697)
T ss_pred             HHHHHHCCCHHHHH
Confidence            66666666666664

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.23  E-value=0.028  Score=56.60  Aligned_cols=83  Identities=20%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------cC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-L--------NG---------NNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      .-..|+++|.++++.+.|..+..+|.|||+ .        .|         ...++.||.|..|+..|+...|.+++.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            445678999999999999999999999996 1        11         23578999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHc
Q 008755          525 INLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       525 l~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .+..-.++..|.+++.|..+.
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999987654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.12  E-value=0.14  Score=49.94  Aligned_cols=105  Identities=11%  Similarity=0.083  Sum_probs=72.0

Q ss_pred             HhhhcccccccccChhhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ..++..+..+..........|...+..-++ .++.+.|...|+.+++.-|.+...|......+.++++.+.|-..|++++
T Consensus        18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i   97 (280)
T PF05843_consen   18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAI   97 (280)
T ss_dssp             HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            333444444444445567788888888666 5666669999999999999999999999899999999999999999999


Q ss_pred             HcCCCCH---HHHHHHHHHHHHcCCHHHH
Q 008755          526 NLDKKNV---KAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       526 ~l~p~~~---~~~~~~g~~~~~~~~~~~A  551 (554)
                      ..-|...   ..|.....--...|+.+..
T Consensus        98 ~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v  126 (280)
T PF05843_consen   98 SSLPKEKQSKKIWKKFIEFESKYGDLESV  126 (280)
T ss_dssp             CTSSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence            8877654   2344444444555655543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.12  E-value=0.12  Score=50.33  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------  531 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------  531 (554)
                      .....+|+++...+.++++++.|++|+++.-++      ..++..+|..+-+++||++|+-+..+|.++--..       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            566778999999999999999999999885443      3578889999999999999999999999884321       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         .-++|.++.+|..+|+.-+|.+
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e  227 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAME  227 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH
Confidence               3367889999999999877754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.95  E-value=0.056  Score=35.12  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      .+++++|.+|..+|+|++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778888888888888888888888876

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.92  E-value=0.23  Score=41.41  Aligned_cols=79  Identities=8%  Similarity=0.012  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       464 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .+..++++.++.+.   .+.++-+..++..++ -.|. .-+..+.++..++++++|++++.+++..|+.+|+|.++.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            35567777777664   456778899999996 4443 346778899999999999999999999999999999986554


Q ss_pred             HHHH
Q 008755          539 GTAR  542 (554)
Q Consensus       539 g~~~  542 (554)
                      -.+.
T Consensus       112 ~~ie  115 (149)
T KOG3364|consen  112 ETIE  115 (149)
T ss_pred             HHHH
Confidence            4443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.46  Score=49.73  Aligned_cols=89  Identities=16%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+.+.+...|+..+|..+++.|...++.-|.      +.....+++.||+.+.+.+.|.+.+++|=+.+|.++-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34556688889999999999999999987554      456788999999999999999999999999999998888888


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      -.+....+.-++|+.
T Consensus       435 ~~~~~~E~~Se~AL~  449 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALT  449 (872)
T ss_pred             HHHHHHhcchHHHHH
Confidence            888778888777763

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.54  E-value=0.45  Score=46.31  Aligned_cols=87  Identities=10%  Similarity=-0.098  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      +|....+...+.+..++|...|.+|++..+....+|...|...+.. ++.+.|...|+.+++..|.+...+..+..-+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            5666677777777788888999998866666778888888887774 455559999999999999888888888888888


Q ss_pred             cCCHHHHh
Q 008755          545 LGYYKEAI  552 (554)
Q Consensus       545 ~~~~~~A~  552 (554)
                      .++.+.|.
T Consensus        83 ~~d~~~aR   90 (280)
T PF05843_consen   83 LNDINNAR   90 (280)
T ss_dssp             TT-HHHHH
T ss_pred             hCcHHHHH
Confidence            88877664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.48  E-value=2  Score=38.51  Aligned_cols=92  Identities=17%  Similarity=0.091  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH--
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKA--  534 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~~--  534 (554)
                      +.-..+..+|..|.+.|++++|++.|.++.+..-.   -.+.+.++..+.+..++|..+..++.++-.+-.  .++..  
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            45678999999999999999999999998876533   245778888888999999999999999877643  23332  


Q ss_pred             --HHHHHHHHHHcCCHHHHhc
Q 008755          535 --YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 --~~~~g~~~~~~~~~~~A~~  553 (554)
                        ....|..+..+++|.+|-+
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~  134 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAE  134 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHH
Confidence              2345777788888888753

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.44  E-value=0.077  Score=54.01  Aligned_cols=87  Identities=14%  Similarity=-0.054  Sum_probs=73.7

Q ss_pred             HHHHhhhcccccccccChhhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008755          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD  520 (554)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~  520 (554)
                      .....++..+..+++..|.....+.+++.++++.   |+.-.|+.....|+++||....+++.++.++.+++++.+|+++
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            3334444556666777788888899999888885   6788899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 008755          521 CTKAINLDKK  530 (554)
Q Consensus       521 ~~~al~l~p~  530 (554)
                      ...+....|.
T Consensus       468 ~~alq~~~Pt  477 (758)
T KOG1310|consen  468 HWALQMSFPT  477 (758)
T ss_pred             HHHHhhcCch
Confidence            9988888884

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.29  E-value=0.33  Score=55.98  Aligned_cols=90  Identities=16%  Similarity=0.059  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  532 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~  532 (554)
                      ......++..++..|++++|...++++++..+..     ..++..+|.++...|++++|...+++++.+....      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            4455567888999999999999999999865442     2356789999999999999999999999774321      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .++.+++.++..+|++++|.+
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~  552 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYE  552 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
Confidence            456788999999999999864

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.26  E-value=0.51  Score=46.71  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ....+.--+...-+.|+++.|-.++.++-+..++ +-.++..++..+...++|+.|....+++++..|.+++++...-.+
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~  196 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA  196 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            3444555566777889999999999998888433 345677888888899999999999999999999999999888999


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      |...|+|.+..
T Consensus       197 y~~~g~~~~ll  207 (400)
T COG3071         197 YIRLGAWQALL  207 (400)
T ss_pred             HHHhccHHHHH
Confidence            99999888764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.26  E-value=0.11  Score=33.68  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN  494 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~  494 (554)
                      +..+.++|..+...|++++|+.++++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4578899999999999999999999999874

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.21  E-value=0.9  Score=38.84  Aligned_cols=75  Identities=9%  Similarity=-0.063  Sum_probs=36.4

Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      ......+.+++...+...--+.|+..++-..-|..+...|+|.+|+..++...+-.+..+.+--.++.|++.+++
T Consensus        19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            333344555555555444444555555444455555555555555555555444444444444444444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.99  E-value=0.23  Score=51.40  Aligned_cols=77  Identities=17%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ..++++.+.+.+...+|-..+.++|.++-..+-.++.+|..|+.+.+.+.|++.+++|++++|+++..-.-+-.+-+
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            45667777777777777778888887776666777788888888888888888888888888887776555444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.95  E-value=0.37  Score=55.58  Aligned_cols=90  Identities=12%  Similarity=0.019  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----  530 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----  530 (554)
                      ...+..++..++..|++++|...++++++....        ....+..+|.+++..|++++|...+++++.+...     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            456678889999999999999999999876221        2234667888999999999999999999886332     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ...++..++.++...|++++|.+
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHH
Confidence            24456678889999999988864

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.65  E-value=0.23  Score=38.94  Aligned_cols=65  Identities=5%  Similarity=-0.030  Sum_probs=44.8

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADC  521 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~  521 (554)
                      ...+|++.+..+.++..++..|++++|++.+-++++.++++  -.+...+-.++-.+|.-+.....|
T Consensus        15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen   15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            44578999999999999999999999999999999998775  445555555555555533333333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.56  E-value=0.37  Score=38.16  Aligned_cols=58  Identities=17%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          472 NQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       472 ~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ....+.++|.+|++.+.+.++....         ...+..++|.++...|++++|+..+++++++-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3456789999999999988865322         235678899999999999999999999999854

>PLN03077 Protein ECB2; Provisional

Probab=93.51  E-value=0.48  Score=54.24  Aligned_cols=91  Identities=13%  Similarity=0.007  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLR  537 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~  537 (554)
                      .+...|..+...|.+.|+.++|+..|++.++.  .|+. ..|..+-.++.+.|++++|.+.+++..+..+  .+.+.|..
T Consensus       552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            46678999999999999999999999998874  5654 4566666778899999999999999884432  24678889


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +..+|.+.|++++|.+
T Consensus       631 lv~~l~r~G~~~eA~~  646 (857)
T PLN03077        631 VVDLLGRAGKLTEAYN  646 (857)
T ss_pred             HHHHHHhCCCHHHHHH
Confidence            9999999999999974

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=0.04  Score=53.46  Aligned_cols=87  Identities=29%  Similarity=0.380  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG-----------N--------NATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ..+.|+..++.++|+.|...|.++++.--           +        -...+.+++.+-++++.+..|+-....+++.
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            34455666666666666666666654210           0        0123445555666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++...++||+++.++..+.++++|++
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~  330 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALE  330 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHH
Confidence            66666666666666666666665554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.04  E-value=0.73  Score=46.67  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .-+..|...+....++.+...|...+-.||-..|.+ ..+-..-..-.++++++.+-..|++-|+-.|.+..++...|..
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl  480 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL  480 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence            346778888888888999999999999999999986 3444444566788899999999999999999999999999988


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      -..+|+.+.|.
T Consensus       481 E~~LgdtdRaR  491 (677)
T KOG1915|consen  481 ETSLGDTDRAR  491 (677)
T ss_pred             HHHhhhHHHHH
Confidence            88888887764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.02  E-value=0.13  Score=55.04  Aligned_cols=92  Identities=30%  Similarity=0.405  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+......|+.+++.++|.+|...|..++.+-|.    ....+.+.+.||++++  +|.+++..++-++...|...++++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3445666788999999999999889988888773    3556778888887665  799999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhcC
Q 008755          537 RRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~~  554 (554)
                      .++.+|..+++++-|++|
T Consensus       132 ~r~~~y~al~k~d~a~rd  149 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRD  149 (748)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            999999998888777654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=1.3  Score=41.20  Aligned_cols=65  Identities=23%  Similarity=0.127  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      .+..+..-++.|...++|++|..++.||++-..+|      ..+|.+.+....++..+.|+.++|++|..+
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34555555666666677777777777777554433      234555666666666666666666666655

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.96  E-value=0.67  Score=46.95  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      -+...|...|+--..+++++.|...|++||..+-.+...|...+.+-++.++..-|-...++|+.+-|.-.+.+|..-..
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            45667888888888899999999999999999999999999999999999999999999999999999988899988888


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      -..+|+...|.+
T Consensus       151 EE~LgNi~gaRq  162 (677)
T KOG1915|consen  151 EEMLGNIAGARQ  162 (677)
T ss_pred             HHHhcccHHHHH
Confidence            888888877653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.95  E-value=1.6  Score=44.72  Aligned_cols=79  Identities=18%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKNVKAYLRRGT  540 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~~~~~~~~g~  540 (554)
                      .-+...++.++.+.|+.+||++.|+..++.+|.  +..+++++..+++.++.|.++...+.+-=++ -|+.....|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344566888999999999999999999988775  5679999999999999999999999885333 2566666666555


Q ss_pred             HH
Q 008755          541 AR  542 (554)
Q Consensus       541 ~~  542 (554)
                      ..
T Consensus       339 Lk  340 (539)
T PF04184_consen  339 LK  340 (539)
T ss_pred             HH
Confidence            43

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.86  E-value=2.5  Score=39.77  Aligned_cols=50  Identities=24%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHh
Q 008755          503 NRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       503 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ..|..|++.|.|..|+.-+++.++..|+-   .+++..+..+|..+|-.++|.
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~  224 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK  224 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence            34555556666666666666666654432   345566666666666665553

>PRK10941 hypothetical protein; Provisional

Probab=92.83  E-value=0.34  Score=46.50  Aligned_cols=55  Identities=16%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~  554 (554)
                      ...|+=.+|.+.++|+.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..|
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~D  237 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSD  237 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence            3466777899999999999999999999999999999999999999999999865

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.82  E-value=0.18  Score=32.23  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ++|..+|.+-+..++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.75  E-value=0.61  Score=45.61  Aligned_cols=89  Identities=20%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----  528 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----  528 (554)
                      -+.+..+|..+-+.+||++|+....||.++....          .-+.+.++.++.++|+.-+|.++++++.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            4578889999999999999999999999874321          3467889999999999999999999998883     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          529 -KKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       529 -p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                       +-+.....-+|.+|...|+.|.|.
T Consensus       242 ra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             hHHHHHHHHHHHHHHHhcccHhHHH
Confidence             223445566888888888876653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.71  E-value=1.1  Score=40.17  Aligned_cols=68  Identities=19%  Similarity=0.071  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      .-+-..++.+.++.|++++|+..++...+-+ ..+.....+|.++...|+-++|...|+++++.+++..
T Consensus       126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         126 ALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            3445667888899999999998887753222 1234456789999999999999999999999875443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.67  E-value=1.1  Score=40.17  Aligned_cols=88  Identities=16%  Similarity=-0.028  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRG  539 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g  539 (554)
                      ......++..+...+++++|+..+++++....+.   +-+-.+++.+.++++++++|+..++....  +.+.. ..-.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            4456677888899999999999999988543321   23557788899999999999988766433  22222 234578


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++...|+.++|+.
T Consensus       167 Dill~kg~k~~Ar~  180 (207)
T COG2976         167 DILLAKGDKQEARA  180 (207)
T ss_pred             hHHHHcCchHHHHH
Confidence            99999988887753

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=2.7  Score=38.86  Aligned_cols=91  Identities=23%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC---
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~---  531 (554)
                      +-+..|...+++| +..+..+|+.+++++|++--+-      ...+..+|..|.. +.++++|+.+|+++-+.....   
T Consensus        72 Daat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   72 DAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             hHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            3445555555555 4559999999999999885432      2234466777654 378999999998887764321   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         -+.+..-+.--.++++|.+|+.
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~  175 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAID  175 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2234444555566777777764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.39  E-value=0.71  Score=48.09  Aligned_cols=82  Identities=23%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCHHHHHHH------HHHH
Q 008755          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC-TKAINLDKKNVKAYLRR------GTAR  542 (554)
Q Consensus       470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~al~l~p~~~~~~~~~------g~~~  542 (554)
                      +...+...++...+.....+++..+|++..++.+++.+....+..-.+...+ +.+.++.|++.+....+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            4667777889999999999999999999999999999998888755555555 55999999999887776      4444


Q ss_pred             HHcCCHHHH
Q 008755          543 EMLGYYKEA  551 (554)
Q Consensus       543 ~~~~~~~~A  551 (554)
                      ..+++-.++
T Consensus       153 ~~l~~~~~~  161 (620)
T COG3914         153 KLLGRTAEA  161 (620)
T ss_pred             HHhccHHHH
Confidence            444444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=0.98  Score=43.77  Aligned_cols=96  Identities=10%  Similarity=-0.042  Sum_probs=72.8

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVK  533 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~  533 (554)
                      ...|...-..-..+..+...|-|++|.+.-++++++|+.+.-+.-..+.++...++++++.++..+.-..=-+    ...
T Consensus       169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH  248 (491)
T KOG2610|consen  169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH  248 (491)
T ss_pred             CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence            3345555555566667788899999999999999999999988899999999999999999998774322111    123


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .|+..+..+..-++|+.|++
T Consensus       249 NyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  249 NYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHhhhcccchhHHHH
Confidence            46667777777788888764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=3.1  Score=38.72  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH--
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VK--  533 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~--  533 (554)
                      +..+-..+..+....++.|+..+|+||..+     .|+-...-...+-=..+..+.++|++.|++++.+--..   ..  
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            334444444455556666666666666655     22222222223333335556666666666666553211   11  


Q ss_pred             -HHHHHHHHHHHcCCHHHH
Q 008755          534 -AYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       534 -~~~~~g~~~~~~~~~~~A  551 (554)
                       .+-..+.+|.+++++++|
T Consensus       151 el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHH
Confidence             222334555666666555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.05  E-value=0.64  Score=48.85  Aligned_cols=78  Identities=18%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCCHHHH
Q 008755          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       476 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~----~~~~~g~~~~~~~~~~~A  551 (554)
                      ...+.+.|.+.+++..+.-|+..-.....|..+...|+.++|++.+++++.......+    .+|.+++++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3557788999999999999999989999999999999999999999999965444333    578999999999999999


Q ss_pred             hc
Q 008755          552 IE  553 (554)
Q Consensus       552 ~~  553 (554)
                      .+
T Consensus       325 ~~  326 (468)
T PF10300_consen  325 AE  326 (468)
T ss_pred             HH
Confidence            64

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.69  E-value=4  Score=33.46  Aligned_cols=65  Identities=14%  Similarity=0.019  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ++..+--+...+...|+|++++..-+++|.       ++.+.    ..+-++++.++..+|+.++|+..|+++-+.
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            455666777788999999999988888884       45553    345688999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=91.64  E-value=1.1  Score=45.71  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+...|.+......+.+.|.+--..|.++|..+|++++.|..-|.-.+..+. .+.|-+.+.++|+.+|+++..+.
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            4677888877666666779999999999999999999999999999998886 99999999999999999988654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.58  E-value=1.4  Score=44.61  Aligned_cols=81  Identities=10%  Similarity=0.051  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....+...+..++.+|+|.++..+-....+++| .+.+|.-+|.|++..++|++|-.++.+.-. +-+-.+..-..+.++
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~l  538 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALAL  538 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHH
Confidence            345566667788999999999999999999999 899999999999999999999998854221 222344455566666


Q ss_pred             HHc
Q 008755          543 EML  545 (554)
Q Consensus       543 ~~~  545 (554)
                      ++.
T Consensus       539 CqK  541 (549)
T PF07079_consen  539 CQK  541 (549)
T ss_pred             HHH
Confidence            543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.49  E-value=0.86  Score=49.69  Aligned_cols=80  Identities=16%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      -....+++++|+....+.++..|+...+....|..++++|++++|..+++..-.+.+++-..+-.+-.+|..++++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            45667899999999999999999999999999999999999999998887777777788888999999999999999986

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.29  E-value=0.72  Score=29.08  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 008755          500 YYSNRAAAYLESGSFLQAEAD--CTKAINLDK  529 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~--~~~al~l~p  529 (554)
                      .++.+|..+++.|+|++|+..  |+-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344455555555555555555  335555544

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.28  E-value=0.92  Score=39.47  Aligned_cols=74  Identities=11%  Similarity=-0.003  Sum_probs=59.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      .|+.++.-...|..+..+|+|.+|+..++.+.+..|..+.+-..++.|++.+++.. =..+.+++++..+ ++.+.
T Consensus        40 RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~  113 (160)
T PF09613_consen   40 RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDAR  113 (160)
T ss_pred             CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHH
Confidence            46788888889999999999999999999999999999999999999999998732 1123556676665 44443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.21  E-value=4  Score=40.62  Aligned_cols=89  Identities=13%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      .+-++...++..+-.|+|++|...|+..+. +|+. ...-.+|..  ...+|+++.|.++.+.+-++-|.-+.+....-.
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            455677778888888999999988887653 4432 222223322  246788899999999999998888888877777


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ..+..|+|++|++
T Consensus       197 ~r~~~gdWd~Alk  209 (531)
T COG3898         197 ARCAAGDWDGALK  209 (531)
T ss_pred             HHHhcCChHHHHH
Confidence            8888888888875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.97  E-value=6.2  Score=36.58  Aligned_cols=78  Identities=15%  Similarity=0.044  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHH-------HHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLK-------AISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      ..+..+..++..+-..++.++       |+..|.++++....      ...+.+.+|.+++++|++++|+.++.+.+...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            567788888888888888554       44455555544322      25678899999999999999999999999864


Q ss_pred             CCCH-HHHHHHH
Q 008755          529 KKNV-KAYLRRG  539 (554)
Q Consensus       529 p~~~-~~~~~~g  539 (554)
                      -.+. ..+..++
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            3332 2444444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.95  E-value=0.39  Score=45.87  Aligned_cols=76  Identities=12%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ++++..|.....-..+.+.|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++|+++|+++..|+
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            4677778877777777788888888899999999999988866 455566778899999999999999998877654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.87  E-value=1.4  Score=42.33  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ...++..+...+...++++.++..+++.++.+|.+-.+|..+-..|++.|+...|+..|++.-++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34578888889999999999999999999999999999999999999999999999999987774

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.85  E-value=4.3  Score=38.18  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=82.7

Q ss_pred             ccccChhhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVK  533 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~  533 (554)
                      .+..+|.+...|..+-+++-.. .+..+-++.++..++-+|.|.++|..+=.+...+++.. .-++.++.+|..+.+|..
T Consensus        69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH  148 (318)
T KOG0530|consen   69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH  148 (318)
T ss_pred             HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence            3455778888888887776554 56778889999999999999999999999999999988 889999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHh
Q 008755          534 AYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~  552 (554)
                      ++..+-+++...+.|++-+
T Consensus       149 aWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  149 AWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             hhHHHHHHHHHHhhHHHHH
Confidence            9999999988888887643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.46  E-value=3  Score=39.99  Aligned_cols=93  Identities=10%  Similarity=-0.058  Sum_probs=66.6

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHH----------------------------------HHHhcCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------------------------AIKLNGNNAT  499 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~----------------------------------al~~~p~~~~  499 (554)
                      .......+++.++...++.++...|+.++|...|..                                  .+..||++..
T Consensus       158 ~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~  237 (304)
T COG3118         158 KQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE  237 (304)
T ss_pred             HHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH
Confidence            333444556667777777788888888777666643                                  1234899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcC
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLG  546 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~g~~~~~~~  546 (554)
                      +.+.+|..|...|++++|++.+-..++.+-.  +..+.-.+-.++...|
T Consensus       238 aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         238 AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            9999999999999999999999998888653  3444444555555544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.45  E-value=0.49  Score=30.21  Aligned_cols=30  Identities=17%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN  494 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~  494 (554)
                      +.+..+|..-+..++|++|+..|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.19  E-value=1  Score=43.59  Aligned_cols=62  Identities=21%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      |+.+|.+|+.+.|++...|+++|.++...++.=+|+=+|-+++-..-.++.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999997766678889998888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.17  E-value=1.5  Score=41.04  Aligned_cols=76  Identities=21%  Similarity=0.205  Sum_probs=65.6

Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (554)
Q Consensus       474 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~  549 (554)
                      +.+..+-..|+.+-+.+|+++|.+..+|..+=.++..++ +..+-++++++.++-+|+|.+.+..+-.+...+|+..
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s  129 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS  129 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence            344566678999999999999999999998888887766 6889999999999999999999999988888887654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.63  E-value=1.3  Score=27.92  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHH--HHHHHHhcCCC
Q 008755          465 EIAKEKGNQAYKDKQWLKAISF--YTEAIKLNGNN  497 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~~  497 (554)
                      +.++..|-.+.++|+|++|+..  |.-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4678889999999999999999  55887787764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.60  E-value=0.99  Score=45.93  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINL-----  527 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----  527 (554)
                      +.+..++-..+.++-.|+|.+|++.+... |+..|.        ....|+|+|.++++++.|.-+..+|.+|++-     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            56677888899999999999999987542 222332        2335799999999999999999999999961     


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 ----DK---------KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ----~p---------~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          .|         +..+..|+.|..|...|+.-.|.+
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq  356 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ  356 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence                12         357789999999999999877754

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.42  E-value=0.31  Score=50.44  Aligned_cols=83  Identities=20%  Similarity=0.125  Sum_probs=74.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008755          471 GNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (554)
Q Consensus       471 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~  549 (554)
                      |..+...|+...|+.++..|+...|... ....++|+++.+-+-..+|...+.++|.++...+-.+|-+|.++..+++.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            4555668999999999999999998754 357889999999999999999999999999888999999999999999999


Q ss_pred             HHhc
Q 008755          550 EAIE  553 (554)
Q Consensus       550 ~A~~  553 (554)
                      .|++
T Consensus       694 ~a~~  697 (886)
T KOG4507|consen  694 GALE  697 (886)
T ss_pred             HHHH
Confidence            8875

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.39  E-value=1.6  Score=39.58  Aligned_cols=57  Identities=19%  Similarity=0.194  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA  519 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~  519 (554)
                      ++++..+.+|..|. ..+.++|+..|.++|++...    +++++..++.+|+++++++.|.-
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            45666666665555 55777777777777766332    46677777777777777776643

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.04  E-value=0.25  Score=48.12  Aligned_cols=77  Identities=17%  Similarity=0.018  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ..+.+.+...++.+.+..|+..-..+++.++....+++.+++.|+.+.++++|+++++.+....|++....-.+..+
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            33444677777888888888888888888888888888888888888888888888888888888876655444433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.34  E-value=3.4  Score=41.11  Aligned_cols=82  Identities=7%  Similarity=-0.095  Sum_probs=63.6

Q ss_pred             ccccChhhHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKD------------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  523 (554)
                      ...++|.+.+.|..+....-..            .-.+.-+..|++||+.+|++...+..+-.+..+..+-++..+-.++
T Consensus        11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~   90 (321)
T PF08424_consen   11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE   90 (321)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455678888888776543222            1245667889999999999999888888888888899999999999


Q ss_pred             HHHcCCCCHHHHHH
Q 008755          524 AINLDKKNVKAYLR  537 (554)
Q Consensus       524 al~l~p~~~~~~~~  537 (554)
                      ++..+|++...+..
T Consensus        91 ~l~~~~~~~~LW~~  104 (321)
T PF08424_consen   91 LLFKNPGSPELWRE  104 (321)
T ss_pred             HHHHCCCChHHHHH
Confidence            99999998776544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.33  E-value=6.9  Score=39.79  Aligned_cols=48  Identities=19%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |..++..|+|.++.-+..-..++.| ++.+|-.+|.++...++|++|.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~  516 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE  516 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence            3445689999999999999999999 89999999999999999999964

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.30  E-value=4.9  Score=40.27  Aligned_cols=83  Identities=19%  Similarity=0.036  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cC-C--------------------------------CHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY  508 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~a~~~  508 (554)
                      .+...++.+..+...|+..+|+..++..++. .. .                                ...++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            6778888999999999999999999988871 10 0                                124566666666


Q ss_pred             HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          509 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       509 ~~~------~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      ..+      +++++++..|+++++++|.+.++++..|..+...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            667      7899999999999999999999999998887655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.03  E-value=0.68  Score=26.65  Aligned_cols=21  Identities=29%  Similarity=0.048  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q 008755          501 YSNRAAAYLESGSFLQAEADC  521 (554)
Q Consensus       501 ~~~~a~~~~~~~~~~~A~~~~  521 (554)
                      +.++|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.00  E-value=1.8  Score=37.10  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  513 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  513 (554)
                      .+....++...+..|+|.-|..+.+.++..+|++..+...++.+|.+++.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999998877654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=87.95  E-value=6.8  Score=45.32  Aligned_cols=88  Identities=10%  Similarity=-0.115  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....|..+-|....-|.-+.-.+.|++|.+.. +-..+|..+...|.+.+++++|.+.|+..++..-+....|..++..+
T Consensus      1496 KLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1496 KLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred             HHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            33444444444444455555556666666655 23456666666666666777777777766666665666666666666


Q ss_pred             HHcCCHHHH
Q 008755          543 EMLGYYKEA  551 (554)
Q Consensus       543 ~~~~~~~~A  551 (554)
                      ..+++-+.|
T Consensus      1575 l~~ne~~aa 1583 (1710)
T KOG1070|consen 1575 LRQNEAEAA 1583 (1710)
T ss_pred             hcccHHHHH
Confidence            666554443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.78  E-value=6.2  Score=39.87  Aligned_cols=78  Identities=12%  Similarity=0.036  Sum_probs=62.9

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------c------------CCC---HHHHHHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------------N------------GNN---ATYYSNRAAA  507 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~~a~~  507 (554)
                      ...+|-..+.+..++.++.++|+++.|.+.+++||=.              +            ++|   ..+.+.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999821              1            112   2345666677


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCC-CHHH
Q 008755          508 YLESGSFLQAEADCTKAINLDKK-NVKA  534 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~-~~~~  534 (554)
                      +.+.|.|..|+++++-.+.+||. ++.+
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            78999999999999999999998 6554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.71  E-value=2.4  Score=40.62  Aligned_cols=58  Identities=24%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A  551 (554)
                      +..||+..+++|.++               .+.|+.++|...+++|+.+.|++++++..+|......++.-+|
T Consensus       112 ~~kEA~~Al~~A~~~---------------~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~A  169 (472)
T KOG3824|consen  112 KVKEAILALKAAGRS---------------RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEA  169 (472)
T ss_pred             hhHHHHHHHHHHHHH---------------HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhh
Confidence            345666666666543               3688999999999999999999999999999998877766555

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.65  E-value=8.6  Score=38.73  Aligned_cols=85  Identities=11%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcC
Q 008755          462 QSAEIAKEKGNQAYK---DKQWLKAISFYTEAI-KLNGNNATYYSNRAAAYLE---------SGSFLQAEADCTKAINLD  528 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~al~l~  528 (554)
                      +.....+..+.++.+   .|+.++|+..+.+++ ...+.+++.+.-.|.+|-.         ....++|+.+|.++++++
T Consensus       177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            455567777888888   899999999999955 4456678888888888742         224899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 008755          529 KKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~  547 (554)
                      |+.... .|++..+...|.
T Consensus       257 ~~~Y~G-IN~AtLL~~~g~  274 (374)
T PF13281_consen  257 PDYYSG-INAATLLMLAGH  274 (374)
T ss_pred             ccccch-HHHHHHHHHcCC
Confidence            765433 445555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.54  E-value=0.92  Score=26.08  Aligned_cols=25  Identities=4%  Similarity=-0.152  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTE  489 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~  489 (554)
                      ...+.+|..+...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4578899999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.59  E-value=7.2  Score=35.38  Aligned_cols=71  Identities=14%  Similarity=0.055  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHHH
Q 008755          479 QWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       479 ~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~g~~~~~~~~~~~A  551 (554)
                      .-++|...|-++ +-.|  +.++..+.+|..|. ..+-+++++.+-++|++...    +++.+..++.++.++++++.|
T Consensus       121 ~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            335666666542 3333  46788888887665 67899999999999999654    588999999999999999987

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.43  E-value=14  Score=37.91  Aligned_cols=92  Identities=21%  Similarity=0.040  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008755          462 QSAEIAKEKGNQA-YKDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       462 ~~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~  532 (554)
                      -.+.....+|..+ +...+.+.|..++++|..+-   |.+    .++++.++.+|.+.. .+..+...+++++++....+
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            3456677777765 55789999999999998663   333    356788999999888 79999999999999987654


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 ----KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ----~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          +..+.++..+...+++..|++
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~e  148 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALE  148 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHH
Confidence                456788999999999888864

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.71  E-value=12  Score=36.20  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             hhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----cCC---C-------HHHHHHHHHHHHHcCCHH---HHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NGN---N-------ATYYSNRAAAYLESGSFL---QAEADCT  522 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~~a~~~~~~~~~~---~A~~~~~  522 (554)
                      ..-+..+++.|...+..+ +|++|...+++++++    .+.   .       ..++..++.+|++.+.++   +|....+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            356788999999999999 999999999999987    221   1       346778899999888754   4555555


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008755          523 KAINLDKKNVKAYLRRGTAREMLGYYKE  550 (554)
Q Consensus       523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~  550 (554)
                      .+-.-.|+.+..++..-.++...++.++
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~  139 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEE  139 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhH
Confidence            5555568877777555555555444443

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.24  E-value=4  Score=35.00  Aligned_cols=54  Identities=13%  Similarity=0.031  Sum_probs=48.7

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  513 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  513 (554)
                      .|+.++.-...|..+...|+|.+|+..++...+..+..+...-.++.|++.++|
T Consensus        40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            467777888889999999999999999999998888888888889999999987

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=82.47  E-value=13  Score=43.28  Aligned_cols=83  Identities=8%  Similarity=-0.034  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ....|..++..++++++-++|...+.+||+.-|.  +.+.....|+.-++.|+-+.+...++-.+.-+|.....|.-+..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            3455666666666666666666666666666665  55566666666666666666666666666666655555554444


Q ss_pred             HHHHc
Q 008755          541 AREML  545 (554)
Q Consensus       541 ~~~~~  545 (554)
                      .-.+.
T Consensus      1643 ~eik~ 1647 (1710)
T KOG1070|consen 1643 MEIKH 1647 (1710)
T ss_pred             HHHcc
Confidence            43333

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.29  E-value=6.5  Score=39.48  Aligned_cols=91  Identities=15%  Similarity=0.061  Sum_probs=75.0

Q ss_pred             ccccccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHc
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----SFLQAEADCTKAINL  527 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l  527 (554)
                      ......+|+..-+|+.+-..+.+++  ++..=+..++++++.||.+..+|..+=.++-+..    ...+-++++.++|.-
T Consensus        99 ~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~  178 (421)
T KOG0529|consen   99 ESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIND  178 (421)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhc
Confidence            3345567899999999999998775  4688899999999999999998877766655433    268889999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 008755          528 DKKNVKAYLRRGTAREM  544 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~  544 (554)
                      ++.|..++.++..++..
T Consensus       179 nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  179 NFSNYSAWHYRSLLLST  195 (421)
T ss_pred             cchhhhHHHHHHHHHHH
Confidence            99999999998888763

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.92  E-value=5.8  Score=39.83  Aligned_cols=69  Identities=17%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      -.++-+.....+|+.+|+...+|+.+.-++.+..  ++..=++.+++++++||.|-.++..+-.+..+..+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence            5566778888999999999999999999998777  38999999999999999999988777666655443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.33  E-value=5.8  Score=37.93  Aligned_cols=61  Identities=11%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ..+...+..+...|.+.+|+.+.++++.++|=+.+.+..+-..+..+|+--+++..|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3455567788999999999999999999999999999999999999999888888776643

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.70  E-value=4.4  Score=30.35  Aligned_cols=32  Identities=25%  Similarity=0.199  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~  493 (554)
                      +.+..+..++..+=+.|++++|+.+|+++|++
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            34566677777777788888888887777653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=80.42  E-value=33  Score=36.75  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCT  522 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~  522 (554)
                      .+-+..|.+.|..-+...+++.|+.+.++|...--.                  ...+|...+......|-++.....|+
T Consensus       422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            356888999999999999999999999998854211                  24578888899999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      +.|.|.=.-++...|.|+.+.....++++.
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesF  531 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESF  531 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence            999999888999999999988887777764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=80.13  E-value=3.4  Score=39.29  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhcC
Q 008755          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEG  554 (554)
Q Consensus       501 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~~  554 (554)
                      ..++=..|...++++.|....++.+.++|+++.-+--+|.+|.++|.+..|++|
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~d  237 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALED  237 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHH
Confidence            344555677889999999999999999999999999999999999999988865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	554
2dc0_A	434	Crystal Structure Of Amidase Length = 434		5e-17
1wao_1	477	Pp5 Structure Length = 477		2e-14
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		9e-14
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-13
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		4e-13
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		5e-13
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		4e-12
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		9e-12
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		2e-11
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-11
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		2e-11
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		4e-11
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-10
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-10
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		5e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-10
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-10
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		9e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		9e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-09
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-09
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-09
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		8e-09
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		1e-08
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		4e-08
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		7e-08
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		7e-08
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-07
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		4e-07
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		4e-07
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		5e-07
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		6e-07
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		7e-07
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		7e-07
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		7e-07
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		8e-07
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		9e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-06
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		4e-06
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		5e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		9e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-04

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 144/375 (38%), Gaps = 29/375 (7%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           GL   V DLF ++G  T  G                    L E GA    KT   E A  
Sbjct: 67  GLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALG 123
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           I G N       N   PS+                +   SLG DT G +R+P+ F G++G
Sbjct: 124 ITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG 183
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL--QLPFAAQRSPRQIIIAD 237
           F+PSYG VS  G +P+S S D  G   R  +    +  +L    +P    ++P       
Sbjct: 184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQNP------- 236
Query: 238 DCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEYFDSKVPSLKGFHKTNGELKNV 296
               +  +P D +   +     K F R +     L  E  +  +P L+G ++        
Sbjct: 237 ----VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEV------Y 285
Query: 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 356
            RL+ RYE    H + ++       P +   +   L ++E    +  + R  +R  +   
Sbjct: 286 TRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKA 344
Query: 357 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQ---NRAFSLLSIA-SVSGCCQVTVPLGYYD 412
           L+    L+ P    P P LG +E+  E  +     AF  L++  S+ G   + +P    +
Sbjct: 345 LRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE 404
Query: 413 KCPTSVSFIARHGGD 427
             P  +  +  +G D
Sbjct: 405 GXPVGLQVVGAYGED 419

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           T+AI LDKK +K Y RR  +   LG ++ A+
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAAL 94

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDT 164
           A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
            G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 11  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           T+AI LDKK +K Y RR  +   LG ++ A+
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAAL 101

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L + GA  +GKT +DEFA   +     +    NP    ++P                  S
Sbjct: 104 LKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F R
Sbjct: 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P              +V  +LG
Sbjct: 100 EAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALG 159
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 216

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGID 163
           GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG D
Sbjct: 102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSD 161
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           T G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR
Sbjct: 162 TGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  DC +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 524 AINLDKKNVKAYLRRGTAR-------EMLGYYKEAIE 553
           AI +D    KAY R G A        E + YYK+A+E
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P               V  +LG
Sbjct: 101 EAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALG 160
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 161 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 430 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
           L  T++    SL E   ADI TK         K     +   + AE A+ +G + +    
Sbjct: 95  LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC KAI  D   V+AY+R+ 
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 540 TAREMLGYYKEAIE 553
           TA+  +  Y  A+E
Sbjct: 215 TAQIAVKEYASALE 228

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           AI  D   V+AY+R+ TA+  +  Y  A+E
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALE 93

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           G+ FAV D  D+ G       P +                L   GA  +GKT +D+FA  
Sbjct: 97  GVPFAVKDNIDVAGLPCSAACPAFTYEPDRDATVVAR---LRAAGAIVLGKTNLDQFATG 153
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           + GT   +  P        +               LV FSLG DT G  RVP+AF  ++G
Sbjct: 154 LVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNLVG 213
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFA 206
            +P+ G +S  G++P   SLD V  FA
Sbjct: 214 VKPTKGLLSTSGVVPACRSLDCVTVFA 240

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE  K  GN  YK   + KAI +Y +A++L+ NNA+ + N   AY + G + +A     
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           KA+ LD  N KA+ RRG A    G Y++AIE
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  DC +
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            I L+   +K Y R+  A E +  Y +A++
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 137/374 (36%), Gaps = 78/374 (20%)
Query: 100 LVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXD 154
           L + GA  +GKT + E+A      SI+G +       NP   S  P             +
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176
Query: 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH 214
           L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  A      R 
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA------RS 230
Query: 215 VGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIK-STEKLFGRQV------- 266
           V      L   A R        D       +P   V     +   + L G+++       
Sbjct: 231 VADAAAVLTAIAGRD-------DADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL 283
Query: 267 LKHENLGEYFDSKVPSLK--GFHKTNGELKN------VMRLIQRYEFK-------NNHNE 311
           LK+  +    +     L+  G      EL N        R +  YEFK       N H  
Sbjct: 284 LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRA 343
Query: 312 WIESVKPALDPDISA--------EIG----EMLEISETVIENCKSIRNEMRSAISSLLKD 359
            + S+      D+ A        E+G    E+L  ++             RS    L   
Sbjct: 344 PLRSLA-----DLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGP 398
Query: 360 DGI-----------LVTPTTAYP-PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
           +GI           LV PTT    P +  G +   E Y        S A+V+G   +TVP
Sbjct: 399 EGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESY--------SAAAVAGYPSLTVP 450
Query: 408 LGYYDKCPTSVSFI 421
           +G  D  P  + F+
Sbjct: 451 MGQIDGLPVGLLFM 464

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           +A+ LD ++VKA+   G  +  +  Y EAI
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAI 97

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           +A+ LD ++VKA+   G  +  +  Y EAI
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAI 92

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 7   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 3   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 59
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+
Sbjct: 60  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 524 AINLDKKNVKAYLRRG 539
            I LD K +K Y+R+ 
Sbjct: 73  CIRLDSKFIKGYIRKA 88

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 47/86 (54%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   +A  D   A  +
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
           D K  KA+ R G AR  +  YK A E
Sbjct: 75  DPKYSKAWSRLGLARFDMADYKGAKE 100

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D  K ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 528 DKKNVKAYLRRGTAREMLGYYKEA 551
                K Y R+  A E L  ++EA
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEA 91

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEA 519
           S E  +++GN+ +K   +  A++ YT+A+ L+    + A  + NRAA +L+   + +AE 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           + +KAI  D  +VKA  RR  A E LG   +A+
Sbjct: 87  EASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAI 552
            ++N        KAY R G +      YK+AI
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAI 552
            ++N        KAY R G +      YK+AI
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +     TKA+ L
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAI 552
                K  LRR +A E LG + +A+
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAM 93

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           KA+ LD  N +A+   G A    G Y EAIE
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY  N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKNVKAYLRRGTAREMLG--YYKE 550
            ++N + Y     A   +G  Y+KE
Sbjct: 68  GRENREDYRMIAYAYARIGNSYFKE 92

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +    C KA+ +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L  NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           KA+ L   N +A+   G A    G Y EAIE
Sbjct: 68  KALELYPNNAEAWYNLGNAYYKQGDYDEAIE 98

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +SAE     GN  YK   + +AI +Y +A++L+  +A  + N   AY + G + +A    
Sbjct: 33  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            KA+ LD ++ +A+   G A    G Y EAIE
Sbjct: 93  QKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLG 546
           KA+ LD  N +A    G A++  G
Sbjct: 68  KALELDPNNAEAKQNLGNAKQKQG 91

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA------------------IKLNGNNATY 500
           ++ +S E  ++KGN+ +  K + +AI  Y +A                  ++L+  N   
Sbjct: 6   DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
           Y+N +  YL  G   +AE   ++ +  ++ N KA  RR  AR
Sbjct: 66  YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	554
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	7e-50
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-43
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-42
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-42
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	2e-42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-41
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-40
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-39
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	9e-38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-37
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-36
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	2e-36
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	6e-04
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	7e-36
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	1e-33
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	3e-33
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	5e-33
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	6e-33
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	9e-32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-10
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-10
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	9e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-04

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  176 bits (448), Expect = 7e-50
 Identities = 91/386 (23%), Positives = 148/386 (38%), Gaps = 37/386 (9%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPR--SDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVP 171
              FA           T T NP      PGG+SSG+A AV A ++  +LG  T G V  P
Sbjct: 107 TTAFASR------DP-TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159

Query: 172 SAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQ 227
           +A+CG    +PS+  +  +G+   S +LDTVG F    + L      +            
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219

Query: 228 RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH 287
           ++PR  ++  +    ++  A++ +Q  IK+ E+  G  V   + L E             
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERA-GASVQAID-LPEAVHEAWR------ 271

Query: 288 KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRN 347
                   +  +IQ +E               + P + A +   + ++    +  + I  
Sbjct: 272 --------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGR 323

Query: 348 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
             R  +  + +   +L+T +     P         +   NR ++L+      G   V VP
Sbjct: 324 RGRRELGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVP 376

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDT 433
           +      P  V  IAR G D   L T
Sbjct: 377 VLKVGGLPIGVQVIARFGNDAHALAT 402

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  150 bits (381), Expect = 1e-43
 Identities = 38/92 (41%), Positives = 52/92 (56%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            KAI  D   V+AY+R+ TA+  +  Y  A+E
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALE 93

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  148 bits (377), Expect = 5e-43
 Identities = 34/93 (36%), Positives = 51/93 (54%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
              A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           C + I L+   +K Y R+  A E +  Y +A++
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  148 bits (376), Expect = 8e-43
 Identities = 35/95 (36%), Positives = 54/95 (56%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            +  SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           ADC +A+ LD ++VKA+   G  +  +  Y EAI 
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA 98

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  149 bits (377), Expect = 1e-42
 Identities = 39/94 (41%), Positives = 56/94 (59%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
             + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  
Sbjct: 9   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           D T+AI LDKK +K Y RR  +   LG ++ A+ 
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALR 102

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  147 bits (374), Expect = 1e-42
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           C   I LD K +K Y+R+      +  + +A  
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQR 102

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  156 bits (398), Expect = 2e-42
 Identities = 61/164 (37%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR--------TSTVVSTLVEGG 104
           +   PL GL   V DLF ++G  T            A ++         +  V  L E G
Sbjct: 60  QVRGPLHGLPLTVKDLFPVKGMPT-----------RAGTKAPLPPLPEEARAVRRLREAG 108

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A    KT + E A  I G N       N   PS+  GGSS G+AVAVA  +   SLG DT
Sbjct: 109 ALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
            G +R+P+ F G++GF+PSYG VS  G +P+S S D  G   R 
Sbjct: 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS 212

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  146 bits (370), Expect = 4e-42
 Identities = 34/92 (36%), Positives = 49/92 (53%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            K ++L     K Y R+  A E L  ++EA  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 93

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  143 bits (364), Expect = 3e-41
 Identities = 38/94 (40%), Positives = 53/94 (56%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
               AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           DC +AI +D    KAY R G A   L  + EA+ 
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA 101

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  143 bits (363), Expect = 1e-40
 Identities = 37/98 (37%), Positives = 50/98 (51%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
            +      ++  K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +A  D   A  +D K  KA+ R G AR  +  YK A E
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKE 100

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  139 bits (353), Expect = 2e-39
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 498
                    +           S E  +++GN+ +K   +  A++ YT+A+ L+    + A
Sbjct: 6   SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             + NRAA +L+   + +AE + +KAI  D  +VKA  RR  A E LG   +A+ 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  143 bits (363), Expect = 3e-39
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A+ LD ++VKA+   G  +  +  Y EAI 
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIA 93

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  145 bits (367), Expect = 9e-38
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
            LTG   A+ D   + G                 SRT         +TVV+ L+  GAT 
Sbjct: 87  VLTGRRVAIKDNVTVAGVPM-----------MNGSRTVEGFTPSRDATVVTRLLAAGATV 135

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            GK V ++  +S +          NP    +  GGSS G+A  VA   VDF++G D  G 
Sbjct: 136 AGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGS 195

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R+P+AFCG++G +P++G V + G  PI  ++D +G   R 
Sbjct: 196 IRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRT 236

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  134 bits (340), Expect = 1e-37
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIE 553
            KAI + ++N        KAY R G +      YK+AI 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  132 bits (333), Expect = 5e-37
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E  KE+GN  +K   + +A+  Y + I     N   YSN+A A ++ G + QA   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 522 TKAINLDKKNVKAYLRR------GTAREMLGYYKEAIE 553
            + +          +R         A+  +G  +  + 
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  131 bits (332), Expect = 1e-36
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
              +A   K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +   
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 520 DCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIE 553
            C KA+ + ++         KA  R G A +       A++
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  140 bits (356), Expect = 2e-36
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 24/169 (14%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAAS--------RTSTVVSTLVEGG 104
           +   PL G+   + D  +     T           SA S          + +V  L + G
Sbjct: 73  RLRGPLHGIPLLLKDNINAAPMAT-----------SAGSLALQGFRPDDAYLVRRLRDAG 121

Query: 105 ATCIGKTVVDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           A  +GKT + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   +
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR 
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS 230

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 363 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 422
           LV PTT    P             +      S A+V+G   +TVP+G  D  P  + F+ 
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465

Query: 423 RHGGDRFLLDTVQNMYASLQEQA 445
               +  L++      A   EQ 
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  139 bits (352), Expect = 7e-36
 Identities = 73/421 (17%), Positives = 132/421 (31%), Gaps = 65/421 (15%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           P  G+ + + DL    +G +          +   A   +  V  +   G   +GKT   E
Sbjct: 63  PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122

Query: 116 FAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFC 175
               +    + +    NP    +  GGSS G+  AVAA L   + G D  G VR+P++ C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182

Query: 176 GILGFRPSYGAVSHMGIIPISTSLD----------TV-----------GWFARDPKILRH 214
           G++G +P+ G +S   ++  S ++           +V           G    D      
Sbjct: 183 GVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPT 242

Query: 215 VGHVLLQLPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 271
                 Q       +P  + +     +         D       +               
Sbjct: 243 ASRPYAQ---GISENPGSLRVGVLTHNPVG--DFALDPECAAAARGAAAAL-------AA 290

Query: 272 LG---EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAE 327
           LG        +    + F K           I             E +   L  D +   
Sbjct: 291 LGHDVNDAYPEALGDRSFLKD-------YSTICDVAIAREIERNGELIGRPLTEDDVEWT 343

Query: 328 IGEMLE----ISETVIENCKSIRNEMRSAISSLLKDDG-ILVTPTTAYPPPKLG------ 376
             EM++    ++      C          +    +    +L+ PT     P++G      
Sbjct: 344 SWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAK 403

Query: 377 --GKEMLSEDYQNRAFSLL---SIASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFL 430
               E     + + +  +L      +VSG   +++P+G   D  P  V  +A +G +  L
Sbjct: 404 GTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463

Query: 431 L 431
           L
Sbjct: 464 L 464

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  132 bits (335), Expect = 1e-33
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +    L G+   + D     G  T           + AS+          STV+  L + 
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLET-----------TCASKMLEGFVPIYESTVMEKLHKE 114

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
            A  IGK  +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG D
Sbjct: 115 NAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSD 174

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  131 bits (332), Expect = 3e-33
 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL GL  AV D     G  T           +A SR          +T V+ L   GA  
Sbjct: 57  PLAGLVVAVKDNIATRGLRT-----------TAGSRLLENFVPPYEATAVARLKALGALV 105

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEF    +  +  +    NP  P ++PGGSS G+A A+AADL   +LG DT G 
Sbjct: 106 LGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGS 165

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR 
Sbjct: 166 VRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARS 206

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  130 bits (330), Expect = 5e-33
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL G+  AV D   +EG  T           + AS+          +TV+  L + GA  
Sbjct: 63  PLFGIPIAVKDNILVEGEKT-----------TCASKILENFVAPYDATVIERLKKAGALI 111

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +     +    NP    ++PGGSS G+A +VA      SLG DT G 
Sbjct: 112 VGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P++FCG++G +P+YG VS  G++  ++SLD +G F R 
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRR 212

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  130 bits (330), Expect = 6e-33
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +      G+  A+ D     G  T           + ASR          +TVV  + E 
Sbjct: 54  EKKGKFWGIPVAIKDNILTLGMRT-----------TCASRILENYESVFDATVVKKMKEA 102

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
           G   +GK  +DEFA   +     +    NP    ++PGGSS G+A AV+A +V  +LG D
Sbjct: 103 GFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSD 162

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G VR P++ CG++G++P+YG VS  G++  ++SLD +G   + 
Sbjct: 163 TGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKT 207

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  128 bits (323), Expect = 9e-32
 Identities = 73/395 (18%), Positives = 121/395 (30%), Gaps = 43/395 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
                L G+  ++ + F  +G+ +  G          +     VV  L   GA     T 
Sbjct: 123 PRQGLLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTN 180

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           V +  +S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PS
Sbjct: 181 VPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 240

Query: 173 AFCGILGFRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQ------- 221
           AFCGI G +P+   +S  G+       +    ++G  ARD + L      LL        
Sbjct: 241 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLD 300

Query: 222 -----LPF--AAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQV----- 266
                LPF     RS R + +     D + +      R +    +  E   G  +     
Sbjct: 301 PTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA-GHTLIPFLP 359

Query: 267 LKHENLGEYFDSKVPSLKGFHKTNGELKN--VMRLIQRYEFKNNHNEWIESVKPALDPDI 324
                  E   +      G        K   V   +           W + +   L   +
Sbjct: 360 NNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPL 419

Query: 325 SAEIGEMLEISE--TVIENCKSI--RNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGK 378
              +   L      +  +  K        R ++ +  K   +  L+TP            
Sbjct: 420 FPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPG 479

Query: 379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDK 413
                     A S   + +        VP+     
Sbjct: 480 RAT------GAVSYTMLYNCLDFPAGVVPVTTVTA 508

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  116 bits (293), Expect = 8e-31
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNGNNATYYSN 503
           +S E  ++KGN+ +  K + +AI  Y +A+                  +L+  N   Y+N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +  YL  G   +AE   ++ +  ++ N KA  RR  AR       EA E
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  112 bits (283), Expect = 3e-28
 Identities = 38/90 (42%), Positives = 52/90 (57%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           AI  D   V+AY+R+ TA+  +  Y  A+E
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALE 228

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 94.5 bits (236), Expect = 5e-22
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K +GN+ YK +Q+ +AI  Y +A +L+  + TY +NRAAA  E G +  A +    
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A+   ++    Y     +   +G     + 
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLG 93

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 9e-16
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +    Y+  ++  AIS   +A++        Y   + ++   G+      D  K I   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           K++  + R       L   ++ ++
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELK 126

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 15/84 (17%), Positives = 25/84 (29%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   K +   K +        +N   A         Y     +  A    T+ I    
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           ++ + Y  R  A   L  + EAI 
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIA 194

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +   A      + +AI+   +AI+ + N    Y  +A A +    +  A      A   D
Sbjct: 179 RAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237

Query: 529 KKNVKAYLRRGTAREMLGYYK 549
            +       R   +      +
Sbjct: 238 AEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 5/84 (5%), Positives = 21/84 (25%), Gaps = 1/84 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                 +       +    + I+    + T +   A    +  +  +          ++ 
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           +  +     G        +  A++
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVK 160

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           + A         + ++  F +A     KA  L  K++     R  A    G Y+ AI 
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAIS 59

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  114 bits (287), Expect = 1e-27
 Identities = 26/92 (28%), Positives = 35/92 (38%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           TK I L      A L+RG      G   EA +
Sbjct: 84  TKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 97.8 bits (244), Expect = 5e-22
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              ++A   C++ + ++  NV A   R  A  +   Y EAI+
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.9 bits (213), Expect = 5e-18
 Identities = 17/94 (18%), Positives = 41/94 (43%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           D   A  L   N +A+ +  T    LG ++ ++ 
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 16/83 (19%), Positives = 37/83 (44%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 530 KNVKAYLRRGTAREMLGYYKEAI 552
            + +       A+ +L   ++  
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRD 383

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIE 553
            + + LD+ + + +      +++             G Y +A  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
           +G+   K  +  +A   + + +K N +                     ++A     SG +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             A A   K + +   + +    R       G  ++AI 
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 18/110 (16%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            +    K++      ++ + +AI  Y  A + N N+         A        + +   
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386

Query: 522 TKAINLDKKN---VKAYLR---------------RGTAREMLGYYKEAIE 553
              +  + K    +KAY +               +  A +       A E
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  107 bits (270), Expect = 3e-27
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 505
           QSA   KE+GN+ +K  +  +AI  Y EA+                K      +   N A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA E
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
           K+K + KAI   ++ +K++ NN         A +  G   +A+ +  KA +L+  N  ++
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159

Query: 534 AYLRR 538
                
Sbjct: 160 NSYEL 164

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  113 bits (284), Expect = 6e-27
 Identities = 39/93 (41%), Positives = 56/93 (60%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            T+AI LDKK +K Y RR  +   LG ++ A+ 
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  111 bits (280), Expect = 2e-26
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           + + A   K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +   
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             TKA+ L     K  LRR +A E LG + +A+ 
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.3 bits (227), Expect = 9e-20
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 454
            G +    T  ++   +  D+ L++ + N+Y    E  D A +S             K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 514
            +   +++ A   +  G   +     L A     +AI+L       Y   A    +    
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +      KA+ LD  N   Y  RG    +L  Y +A +
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 516
           ++ E+             + KA+  Y  AI+L       Y   A    ++    +     
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 517 ----AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
               A     KA  LD ++ +A +     +       EAI 
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 11/84 (13%), Positives = 28/84 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G   +  + + +A   + +A +L+  N   Y   A        F   E   ++A     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           +  +              + +A++
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALK 393

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 474 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
              D+    +  +++ +A+KL+ NN++ Y +R        ++ QA  D  KA  LD +N+
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338

Query: 533 KAYLRRGTAREMLGYYKEAIE 553
             Y++          + +   
Sbjct: 339 FPYIQLACLAYRENKFDDCET 359

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
               AY++ ++    + ++EA +         +  A    +   F +A      AI L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 530 KNVKAYLRRGTA---------REMLGYYKEAIE 553
           K    Y+                 +  + EA  
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 528
                       K +   T+A++L  + +     RA+A    G F  A  D +  ++N D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 529 KKN--VKAYLRRGTAREMLGYYKEAIE 553
             +  ++  L R   ++ +   KE   
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFG 131

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
           + +++A +   +A KL+  +       A   L+     +A     ++ +L +   +    
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL-- 486

Query: 538 RGTAREMLGYYKEAIE 553
           +          ++ I 
Sbjct: 487 QAITFAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 12/110 (10%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---- 511
                KQ    +       +   +     + Y E+ + +       SN      ES    
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208

Query: 512 --------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                     F +      +   L +K   +    G  + +      A E
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  108 bits (272), Expect = 5e-26
 Identities = 26/90 (28%), Positives = 35/90 (38%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D TK
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            I L      A L+RG      G   EA +
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAED 92

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              ++A   C++ + ++  NV A   R  A  +   Y EAI+
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 17/94 (18%), Positives = 41/94 (43%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           D   A  L   N +A+ +  T    LG ++ ++ 
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 16/81 (19%), Positives = 37/81 (45%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337

Query: 530 KNVKAYLRRGTAREMLGYYKE 550
            + +       A+ +L   ++
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIE 553
            + + LD+ + + +      +++             G Y +A  
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 514
           +G+   K  +  +A   + + +K N +                       A    +   +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             A     K + +   + +    R       G  ++AI 
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 16/96 (16%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
            +    +   A+   T+ I L  +       R    L+ G   +AE D  K +  +    
Sbjct: 46  VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 533 KAY---------------LRRGTAREMLGYYKEAIE 553
           +                   +         Y  AI 
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +   +       L +G    A +    A++ D  N  AY RR T    +G  K A+ 
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 58

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  107 bits (268), Expect = 9e-25
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            ++  A   K +GN  +  K + +AI +Y  AI+L+ N   +YSN +A Y+ +G   +  
Sbjct: 20  QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              TKA+ +   + KA LRR +A E LG + +A+ 
Sbjct: 80  EFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           ++ +A      G   +     L A     E+I L+    +Y    A    +  +  +   
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              KA++L+ +    Y  RG    +L  YK A E
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   +   F+ +A+ LN      Y +R   Y     +  A+ D  KA +L+ 
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           +NV  Y++        G + E+  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEA 365

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 18/109 (16%)

Query: 462 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 507
              E+          D+     AI  Y  A +L       +                   
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434

Query: 508 ---YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
               L+   F  A    TKA  LD ++ +A +     +  +    EAIE
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
           Q Y   + +  A   + +A  LN  N   Y   A    + G F ++EA   +        
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

Query: 532 VKAYLRRGTAREMLGYYKEAIE 553
            +            G +  AI+
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                YK  ++ ++ +F+ E            +  A    + G F  A      A  L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 530 KNVKAYLRRGTA----------------REMLGYYKEAIE 553
              K ++  G                  +     +  AI+
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 1/96 (1%)

Query: 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
                                 +   +S  T    L  N A         +    + L A
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +    ++INL      +Y+            +E  +
Sbjct: 263 QVLLQESINLH-PTPNSYIFLALTLADKENSQEFFK 297

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 482 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
                  +   L+ +     A    NR   +  + +F +A      AI LD      Y  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 538 RGTAREMLGYYKEAIE 553
                   G  ++ IE
Sbjct: 65  ISACYISTGDLEKVIE 80

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 10/98 (10%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
               +         +      ++++  AI   T+A +L+  +       A   L+     
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +A      +  L +   +    + T        ++ + 
Sbjct: 480 EAIELFEDSAILARTMDEKL--QATTFAEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 8/132 (6%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA------YKDKQWLKA 483
           +L+   N  A      +++      +       S        +             +  A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192

Query: 484 ISFYTEAIKLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
            +  ++A++   +        A   L   +  +    +  T    L +    A    G  
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252

Query: 542 REMLGYYKEAIE 553
             +     +A  
Sbjct: 253 HFLKNNLLDAQV 264

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI---N 526
                       K I F T+A+++  +++     RA+A    G+F  A  D +      +
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124

Query: 527 LDKKNVKAYLRRGTAREMLGYYKEAIE 553
            D  +++  L R   ++ +    E + 
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLS 151

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  102 bits (255), Expect = 5e-24
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 504
           + + + I KE+G   +K+ ++ +A+  Y + +               K        + N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A  +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
           K + +  AI    +A++L+ NN    S R  A+L    F  A AD  K + L   N   K
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267

Query: 534 AYLRR 538
             L  
Sbjct: 268 TQLAV 272

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 85.5 bits (211), Expect = 2e-18
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 17/111 (15%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 502
           +  +A+  K  GN  +K+++  +A+  Y  AI   G++  +                 + 
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           N AA  ++   + +A   C   +  ++KN KA  RRG A+  LG    A +
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G        Q   AI  Y  A+  +      Y    + +   G+F  A     K I   
Sbjct: 80  YGK-ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             + K +   G A      Y +A  
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADS 163

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 521
           + ++     +  +K+  + +AI  + +      N+   Y+ RA  Y E   +  A+ D  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 522 --TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                +N  K     +   G      G    AI+
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 464 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
            ++  + G+  + +   +  AI +  + I+    +   +     AY  +  +++A++   
Sbjct: 108 LDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

Query: 523 KAINLDKKNVKAYLRRGTAREMLG----------YYKEAIE 553
           K + L       YL R  A               YY++ IE
Sbjct: 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516
           +  S  I   +    Y+  ++  A      Y   +      +  +       ++ G    
Sbjct: 33  KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92

Query: 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A      A++ D   +  Y + G+     G +  AI+
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 526
            G   Y +K+++KA S + + ++L  N    Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 527 LDKKN--------VKAYLRRGTAREMLGYYKEAIE 553
           +            ++A         +     +A  
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 527
            D +   A  +Y + I++                   A  Y  +   ++A+A     + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 528 DKKNVKAYLRRGTAREMLGYY 548
           D  N KA        E   ++
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 79.4 bits (196), Expect = 8e-18
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 12/115 (10%)

Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
            +L     +             + + E     G   Y+  +W  A   +     L+  +A
Sbjct: 5   GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            Y+    A     G + QA    +    +D    +           LG    A  
Sbjct: 53  RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531
                + +A+  Y+    ++ N   +  + A  +L+ G    AE+    A  L       
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

Query: 532 VKAYLRRGTAREMLGYYKE 550
                R G   E +   K+
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N + S+++A E      K++ + KA  FY E ++   NN       A   +  G    A 
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 519 ADCTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIE 553
               K + L+  N+ A +  G          K+ +E
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 505
           QS +   +K + A +  Q  +A+S++ + I LN +                     +  A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            AY ++ ++ +A     + +     NV         +   G  K+A+ 
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 528
                    Q   A+  Y + ++L  +N          Y  +     +      K ++  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            K   A  R G ++     Y++A  
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARN 178

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 6/56 (10%), Positives = 14/56 (25%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
             +Q  K +    + +               + L +  + +A     K I      
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 20/92 (21%), Positives = 36/92 (39%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y E G   +A    
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             A+ L    +  Y+    A    G  + A++
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 21/84 (25%), Positives = 32/84 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            GN   +  Q  +AI  Y  A++L  +    Y N AAA + +G    A      A+  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
                    G   + LG  +EA  
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKA 156

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K+ + + +A++ Y  A+ L+ N+A  + N A  Y E G    A     +AI L 
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
                AY     A +  G   EA +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAED 292

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.3 bits (186), Expect = 8e-15
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             N A K+K    +A   Y  A++L   +A   +N A    E G+  +A     KA+ + 
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            +   A+    +  +  G  +EA+ 
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALM 360

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y ++     AI  Y  AI+L  +    Y N A A  E GS  +AE     A+ L 
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             +  +       +   G  +EA+ 
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVR 326

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 15/85 (17%), Positives = 32/85 (37%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
               +AY   G   +  G  +EAIE
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIE 88

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.0 bits (180), Expect = 4e-14
 Identities = 16/84 (19%), Positives = 24/84 (28%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                        A+  Y  A++ N +     S+        G   +A+A   KAI    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
               A+   G      G    AI 
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIH 190

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K    L +A + Y +AI+   N A  +SN    +   G    A     KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
              + AY+  G   +    +  A+ 
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVA 224

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 17/84 (20%), Positives = 30/84 (35%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       +   AI  + +A+ L+ N    Y N      E+  F +A A   +A++L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
            +   +          G    AI+
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAID 258

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 530 KNVKAYLRRGTAREMLG 546
               AY   G   + + 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 8/53 (15%), Positives = 14/53 (26%)

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
               A    ++G F  AE  C +    +  N    L   +          +  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH 54

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G  A   K W  A+  ++    +   ++    N    Y    +  +AE   T++IN DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
               AY +RG        Y  AI+
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIK 92

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 16/108 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  D 
Sbjct: 35  PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94

Query: 522 TKAINLDKKNV----------------KAYLRRGTAREMLGYYKEAIE 553
            +A+   + N                 +              +K+A E
Sbjct: 95  KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 513
           +G   Y+ +++  AI    EA+  L GN    Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 514 FLQAEADCTKAINLDKKNVKAYLRR 538
           + +AE     A ++  +   + + +
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDK 161

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 3/61 (4%)

Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           ++   A    N      +   +  A    +   +    + +     G    +L    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAE 57

Query: 553 E 553
           +
Sbjct: 58  K 58

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
            +  +LQ++  +A   + L++      + A++  E+G           A + +++A+ + 
Sbjct: 14  PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +    ++       ++G+F  A       + LD     A+L RG A    G  K A +
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 132

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
           ++QA    K     +   Q     +    GN   +     +  +  T+   L  + +   
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                 YL  G    A A    A+  +  N   +        +LG  ++ + 
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 13/84 (15%), Positives = 24/84 (28%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +   +  A   +   ++L+      + NR  A    G    A+ D       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
            +    L    A + L   +    
Sbjct: 143 NDPFRSLWLYLAEQKLDEKQAKEV 166

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 8/87 (9%), Positives = 19/87 (21%), Gaps = 4/87 (4%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G   Y   +   A        + + N+         A  +     QA+    +      
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSD 175

Query: 530 KNVKAYLRRGTAREML---GYYKEAIE 553
           K    +         +      +    
Sbjct: 176 KEQWGWNIVEFYLGNISEQTLMERLKA 202

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            G           A + +  A+  N +N   +          G      A+  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.4 bits (189), Expect = 7e-16
 Identities = 23/83 (27%), Positives = 34/83 (40%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             +  +   + KA   +T+AI+ N  +A  Y N A          +A A   KA+ LD  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
              AY   G    +   YKEA +
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKD 112

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.0 bits (188), Expect = 9e-16
 Identities = 19/84 (22%), Positives = 36/84 (42%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             N      +  +A++FY +A++L+ + AT Y      Y+    + +A+    KA+    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           +N   +   GT    L   K A+ 
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALP 146

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G       +Q   A+ +   A++LN N+              G   +A +        D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             +  A+   G         ++A+E
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALE 214

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 73.7 bits (182), Expect = 5e-15
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN  Y  K+   +A   + +A++    N   +       ++      A     +A+ L+
Sbjct: 97  AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
           + + +A  + G      G   EA+ 
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALS 180

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +     +A+S +    + +  +A  + N    Y    +  +A     KAI++ 
Sbjct: 165 FGM-CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

Query: 529 KKNVKAYLRRGTAREMLGYY 548
             ++ A   +        ++
Sbjct: 224 PDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLDKKNVKAYLR 537
            +   +  +  L    +   S      +  GS      +A    TKAI  +K++   Y+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 538 RGTAREMLGYYKEAIE 553
                  +   + A+ 
Sbjct: 63  FANLLSSVNELERALA 78

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 13/95 (13%), Positives = 25/95 (26%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                A  LD K++  +     +         A+ 
Sbjct: 76  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 110

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 11/84 (13%), Positives = 29/84 (34%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G        +  A +    A++L  ++A  ++   A         +A     +A++++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
             V+       +   +  Y  A +
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAK 261

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 13/84 (15%), Positives = 37/84 (44%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +        ++ +  +    A+++N N+A  +++    Y  S ++  A A+  +A+ L  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
            + + + + G         +EA++
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALD 227

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 10/85 (11%), Positives = 25/85 (29%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    ++++   AI     A  L+  +   ++  A ++    +   A A     +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEG 554
           +  +       A   +       E 
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSED 145

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 8/75 (10%), Positives = 18/75 (24%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
             L+  + Y                   + L+  +  +A            +  +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 539 GTAREMLGYYKEAIE 553
           G  +        AI 
Sbjct: 62  GLTQAENEKDGLAII 76

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +  +  +A+  Y  A+ +N        N A +Y     +  A     +AI + 
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

Query: 529 KKNVKAYLRRG--TAREMLGYYKEAIE 553
                          R M  +++  + 
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLN 297

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 6/99 (6%), Positives = 21/99 (21%), Gaps = 15/99 (15%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
                  +     A++     +          S               +    +     +
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +       A+ ++  + + +   G    +   Y  A  
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 70.6 bits (174), Expect = 4e-15
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q+ E    +G   Y    + ++I  + +AI+L+   + Y+  +  A      + +A    
Sbjct: 4   QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63

Query: 522 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIE 553
              IN+  D+ N   +  +  A   +   +   E
Sbjct: 64  NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE 97

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.5 bits (135), Expect = 6e-10
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           +   N   Y        ++G++ ++     KAI LD +  K +L +G A   L  Y+EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 553 E 553
           +
Sbjct: 61  D 61

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.0 bits (105), Expect = 9e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KG   Y  +++ +A+  Y   I +  +  N   ++ +A A                   L
Sbjct: 46  KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

Query: 528 DKKN 531
           +  +
Sbjct: 106 EHHH 109

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 12/118 (10%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
           N  A+L++   I                 +         Y   +  +A  F+      + 
Sbjct: 20  NSGATLKDINAI------------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            N  Y    AA Y     F QA      A  L K +       G  +  L    +A E
Sbjct: 68  YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE 125

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 9/85 (10%), Positives = 27/85 (31%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  + +      + + +   +   +  +      + A  +   G   +AE         D
Sbjct: 7   ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             NV   +      ++   +++A +
Sbjct: 67  FYNVDYIMGLAAIYQIKEQFQQAAD 91

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            + +            +Q+ +A   Y  A  L  N+ T   +     L   + L+A+   
Sbjct: 68  YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

Query: 522 TKAINLD-----KKNVKAYL 536
              I        K   ++YL
Sbjct: 128 ELVIQHSNDEKLKIKAQSYL 147

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 76.6 bits (188), Expect = 5e-15
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 6/149 (4%)

Query: 406 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 465
           VP G +    T    + R        +  +++   LQ   D     +   +++ +  S E
Sbjct: 15  VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 524
            A  K       ++  K +    E +      A     +  A   +  +   AE   +KA
Sbjct: 72  DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           + L+ + V+A+ + G      G    A  
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHT 158

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           N     K   +A+S Y +A K++    +N   + NRA  +    S+ +A    ++A  LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
               +   R     E L      +E
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLE 313

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEAD 520
           +  +     +  + ++     A++++  +   +     AYL              QA + 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 521 CTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIE 553
             +A  +D+K   N   +L R T  +    Y EA+E
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 460 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
            +  A+    KG  A         +A    ++A+KL       ++     Y + G    A
Sbjct: 98  AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156

Query: 518 EADCTKAINLDKK--------NVKAYLRRGTAREMLGYYKEAIE 553
               + A+   K          V   L+  +  E   +  +++ 
Sbjct: 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 18/107 (16%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------SF 514
            E   + G   +K      A + ++ A+    N  +   N +    +             
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHV 195

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTA--------REMLGYYKEAIE 553
           + +      A+ +D  + +++   G A         +     ++A+ 
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 70.5 bits (174), Expect = 9e-15
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 41  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            ++ +A+   G A    G Y EAIE
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIE 124

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +  + +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 7   LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            ++ +A+   G A    G Y EAIE
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIE 90

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.5 bits (122), Expect = 8e-08
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 75  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133

Query: 529 KKN 531
            ++
Sbjct: 134 PRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A  + N   AY + G + +A     KA+ LD ++ +A+   G A    G Y EAIE
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 9/92 (9%), Positives = 23/92 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A       ++ L   +  + 
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 10/92 (10%), Positives = 25/92 (27%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++ +       +  +     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  ++ L   +  + 
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 10/92 (10%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  R  L      + 
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLS 467

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 7/84 (8%), Positives = 21/84 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           + V A       ++ L   +  + 
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLP 433

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 10/92 (10%), Positives = 24/92 (26%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  ++ L   +  + 
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLP 399

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 9/92 (9%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q               +   + +    +A  L        ++         +        
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  ++ L   +  + 
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 7/92 (7%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +   + +    +A  L        ++         +  +     
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A       ++ L   +  + 
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLP 161

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 8/92 (8%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +     +    +A  L        ++         +  +     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  ++ L   +  + 
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 229

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 7/84 (8%), Positives = 21/84 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           + V A       ++ L   +  + 
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLP 365

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 9/92 (9%), Positives = 24/92 (26%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L  + V A    G  ++ L   +  + 
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLP 263

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 441 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNAT 499
           L+    +A + +      +  Q  +IAK  G  A +    W  A+      + L      
Sbjct: 16  LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVV 73

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             ++         +  +      +A  L  + V A       ++ L   +  + 
Sbjct: 74  AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 9/92 (9%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +      +       +     A       ++L+       + R              A  
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              +NL  + V A       ++ L   +  + 
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 7/84 (8%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         S +   +    A+    
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
            +         A   LG  + A++
Sbjct: 478 ND------HLVALACLG-GRPALD 494

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
           +     Q Q  ++   K    +T N  +    A E+G +  K+      I F   AI  +
Sbjct: 36  SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             +A  +        E+ +   A     + + L   N+KA +    +     + ++A E
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 14/84 (16%), Positives = 35/84 (41%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G   +   ++ +AI  +  A+ +   + + ++   A         +A    T+A+ +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
             +++    G +   LG Y+EA+ 
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVS 302

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 11/84 (13%), Positives = 24/84 (28%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +++    AI      ++L  NN       A +Y  +     A       I  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           K       +  +  +     ++  
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPV 188

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 459 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 515
             K+ +     + +++  D          Y EA   NG+  +    +     +  SG F 
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +A      A+ +  ++   + R G         +EA+E
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 4/115 (3%)

Query: 443 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 498
           E+A  A +S        Q +  E+A+       ++ Q    +S   +    +  N     
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                     L+ G           AI  D  + +A+   G  +      + AI 
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           +A+  YT A+++         N   + +  G++ +A ++   A++L +K+         A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 542 --REMLGYYKEAI 552
               +    + A+
Sbjct: 325 ISGNIWAALRIAL 337

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 13/93 (13%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------- 524
           +Y +      A       IK N        N+  +   +    ++  D +          
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201

Query: 525 ----INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                N D  +       G    + G +  AI+
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 13/84 (15%), Positives = 31/84 (36%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KG    K  ++ +A+    +    +  +     +   AY+++G+  +      +++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
            NVK     G     +  Y  A+ 
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVP 97

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 69.4 bits (171), Expect = 5e-14
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  AY       +       ++    +N    +     Y++   +  A     K    +
Sbjct: 48  LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             N     R G A + LG + EAI+
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAID 131

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G   Y   +++  A+    +  + N  N         A    G F +A      A+ L 
Sbjct: 82  LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
               K +     + E +G ++EA+ 
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALP 165

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.4 bits (132), Expect = 9e-09
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550
           +  +     YY ++  ++ ++G + QA     +  + D  +V   L  G A    G    
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 551 AIE 553
             E
Sbjct: 61  GTE 63

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  A  +     +AI  +  A+ L  N    +   A +Y + G   +A     KA  LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

Query: 529 KKNVKAY 535
           +      
Sbjct: 175 EGASVEL 181

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 13/112 (11%), Positives = 34/112 (30%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            +               N  +      E+G +  ++     A+  +  A++ +  +   +
Sbjct: 42  DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                   E+   L A +   + + L   N  A +    +       ++A E
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 17/84 (20%), Positives = 36/84 (42%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
             +++    G +   LG ++EA+E
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVE 306

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523
            +K        D  +L+    +  A++L+  +            +  SG + +A    T 
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A+++   +   + + G         +EA+ 
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVA 272

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +++Q L AIS     ++L  +N T     A ++       QA       +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 530 KNVKAYLRR---------GTAREMLGY------YKEAIE 553
                             G ++ +LG       + E  E
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           +A++ Y  A++L         N   + +  G+  +A     +A+N+ +K+       G  
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328

Query: 542 REMLGYYK 549
            E +    
Sbjct: 329 SENIWSTL 336

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 72.1 bits (177), Expect = 8e-14
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 16/106 (15%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 507
           +E  K  GN  +K + W  AI  YT+ +                KL     +   N  A 
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            L+   +  A   C +A+ +D  N KA  RR    + L  Y +A+ 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 11/71 (15%), Positives = 18/71 (25%)

Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
                   +    +N          Y E   F  A      A++ D     A+   G   
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 543 EMLGYYKEAIE 553
           +  G    A +
Sbjct: 64  QGQGDRAGARQ 74

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 4/74 (5%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G    + +Q+  A+     A+  +   +  +          G    A       +   + 
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 531 NVKAYLRRGTAREM 544
                      +E+
Sbjct: 86  RGDQ----QVVKEL 95

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G+   K K++ +A+ ++ +A+ L   NA+ YS     +   G+F  A      A+ L +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEG 554
            +  +    G   EM     EA  G
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 3/86 (3%)

Query: 470 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
            G   Y         A  + ++A  L       +     ++       QA A    A  L
Sbjct: 96  VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
            K      L  G    +    K A  
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAER 180

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 12/72 (16%), Positives = 27/72 (37%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           +A++ Y  A +L              Y  + +   AE   ++A+++  ++       G  
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 542 REMLGYYKEAIE 553
               G +K A +
Sbjct: 203 AFQNGEWKTAEK 214

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 519
           E G  A+++ +W  A  ++ +A++                  +N      +   + +A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              +A+ L  +N   Y   G    ++G ++ A++
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 12/122 (9%), Positives = 38/122 (31%), Gaps = 12/122 (9%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           S  + ++      +       +++ ++      + Y +  +       +  ++ +  +A+
Sbjct: 2   SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG--------YYKEA 551
                    +E     +      K ++L   N  ++   G    M+G        Y  +A
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 552 IE 553
             
Sbjct: 118 TT 119

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G +         A  F+++A+ +   +            ++G +  AE     A+   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 530 ---------KNVKAYLRRGTAREMLGYYKEAIE 553
                    K        G     L  Y EA++
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 500
           +T  + + A I KEKG   +K  ++++A+  Y + +                        
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           + N A  YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VK 533
           K +++ KA+    +A+ L+  N      R  A L    F  A+ D  K + ++ +N   +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 534 AYLRR 538
             +  
Sbjct: 389 LQISM 393

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY     + +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             N +A+   G A    G Y EAIE
Sbjct: 74  PNNAEAWYNLGNAYYKQGDYDEAIE 98

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 49  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

Query: 529 KKNVKAYLRRGTAREMLG 546
             N +A    G A++  G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 19/120 (15%), Positives = 35/120 (29%)

Query: 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
           V N   +  E+ D+  K   ST +                    +  L+    Y  +I  
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              ++     +A        F+   A  TK + +D  N+  Y     +    G   +   
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 30/84 (35%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       +  +A  +++++  ++      +   A ++   G   QA +  T A  L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
                YL  G     LG    A E
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANE 462

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 13/95 (13%), Positives = 37/95 (38%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             ++S+++   K +  +   +++  ++  T+ ++++  N   Y    A+  ESG   +  
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                 ++   +    +L  G     +    EA  
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             + ++    +  +AIS YT A +L       Y      +++ G+ L A      +  L 
Sbjct: 413 FAH-SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
           + +       G         + AI 
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAIN 496

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 521
           E G  A+       AI+ +  A+ L           A  ++N   AY +   +  A    
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            + + L   +   +               AI 
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G+   K K +  AI    + + L+ N+A  ++  A  YL       A     +++ +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 530 KNVKAYLRRGTA 541
             + A      A
Sbjct: 582 NEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 11/84 (13%), Positives = 29/84 (34%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                ++  +  K      + +  +   A  +      YL      +A    +K+  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
           +   A++    +  + G + +AI 
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAIS 428

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 7/91 (7%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527
            G Q  +    L A  +   +  L   +    +              A      A+ L  
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 528 -----DKKNVKAYLRRGTAREMLGYYKEAIE 553
                +K     +   G A   L  Y  AI+
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAID 537

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 3/122 (2%)

Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
             +  +   + D    +KL       K  A +   +G        + +A   Y EA+ ++
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 495 GNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
                 +    + +L +           + +     D   +++       +         
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 552 IE 553
            E
Sbjct: 291 AE 292

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.8 bits (164), Expect = 8e-13
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +G   Y    +  KA +   +A+ L  +     S  A  YL  G   +A A   KA+   
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            K++   +R  +A  + G  +EA  
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 61.0 bits (149), Expect = 7e-11
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
             + ++  ++        +A+S   +A ++N   A  +  R   Y   G   +AEA   +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A+ L +   +           +G   EA+ 
Sbjct: 144 ALAL-EDTPEIRSALAELYLSMGRLDEALA 172

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G Q Y   ++  A++ +  A+K N  +       A   L+ G    A  +    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 530 KNVKAYLRRGTA-----------REMLGYYKEAIE 553
           + +  Y+    A               GY ++A+ 
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 8/58 (13%), Positives = 17/58 (29%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                           G +  A     +A+  + ++ +A       +  LG    A+E
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y     L +A++ Y +A++    +       A+A L  G   +A        +  
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 61.7 bits (150), Expect = 7e-12
 Identities = 13/95 (13%), Positives = 25/95 (26%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                A  LD K++  +     +         A+ 
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 106

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 9/69 (13%), Positives = 24/69 (34%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +  E  +  G    ++++   AI     A  L+  +   ++  A ++    +   A A  
Sbjct: 49  EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

Query: 522 TKAINLDKK 530
              +    +
Sbjct: 109 RAWLLSQPQ 117

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            Q + I  +   +  + + + +A +   +A+K +  N   +  RA  Y       +A+  
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 521 CTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIE 553
             +A+++   + +     G      L    E++ 
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA 98

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           ++++++ +A+             N+     + G F  AEA   +++    +   A+    
Sbjct: 95  ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154

Query: 540 TAREMLGYYKEAIE 553
             + + G   +A  
Sbjct: 155 RTKMLAGQLGDADY 168

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KG  + K  Q+  A ++   ++         +   A   + +G    A+    K  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
                 L  G           A  
Sbjct: 179 VLQADDLLLGWKIA--KALGNAQA 200

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 10/114 (8%), Positives = 27/114 (23%), Gaps = 1/114 (0%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           +++           +       Q   IA          +   + +    +A  L      
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             ++         +  +      +A  L    V A       ++ L   +  + 
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 9/92 (9%), Positives = 23/92 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L    V A    G  ++ L   +  + 
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 7/85 (8%), Positives = 21/85 (24%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                    +   + +    +A  L  +     ++         +  +      +A  L 
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
              V A       ++ L   +  + 
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLP 349

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 5e-11
 Identities = 8/92 (8%), Positives = 22/92 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L    V A    G  ++ L   +  + 
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLP 315

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 8/92 (8%), Positives = 23/92 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L +  V A       ++ L   +  + 
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 5e-10
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 1/112 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            E            +   Q Q   IA          +   + +    +A  L        
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIA-SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           ++         +  +      +A  L    V A    G  ++ L   +  + 
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 688

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 6e-10
 Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L    V A    G  +  L   +  + 
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQA-LETVQRLLP 416

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 1/112 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            E            +     Q   IA          +   + +    +A  L  +     
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           ++         +  +      +A  L ++ V A       ++ L   +  + 
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 8/94 (8%), Positives = 21/94 (22%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
                                 + +    +A  L  +     ++         +  +   
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              +A  L    V A    G  ++ L   +  + 
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 586

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 8/84 (9%), Positives = 22/84 (26%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L  +     ++         +  +      +A  L  
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
             V A    G  ++ L   +  + 
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLP 552

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 7/92 (7%), Positives = 19/92 (20%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +   L        ++         +  Q     
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L    V A       ++ L   +  + 
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLP 518

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 4e-09
 Identities = 8/85 (9%), Positives = 21/85 (24%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             G      +   + +    +A  L        ++         +  +      +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
              V A       ++ L   +  + 
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLP 654

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 5e-09
 Identities = 8/72 (11%), Positives = 20/72 (27%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L        ++         +  +      +A  L    V A    G  
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744

Query: 542 REMLGYYKEAIE 553
           ++ L   +  + 
Sbjct: 745 KQALETVQRLLP 756

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A  L    V A       ++ L   +  + 
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 7e-09
 Identities = 6/72 (8%), Positives = 20/72 (27%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L  +     ++         +  +      +   L    V A       
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472

Query: 542 REMLGYYKEAIE 553
           ++ L   ++ + 
Sbjct: 473 KQALETVQQLLP 484

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 7e-08
 Identities = 7/75 (9%), Positives = 20/75 (26%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
              + +    +A  L  +     ++         +  +      +A  L    V A    
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 539 GTAREMLGYYKEAIE 553
              ++ L   +  + 
Sbjct: 776 IGGKQALETVQRLLP 790

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 6/72 (8%), Positives = 18/72 (25%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L        ++         +  +      +   L    V A       
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812

Query: 542 REMLGYYKEAIE 553
           ++ L   +  + 
Sbjct: 813 KQALETVQRLLP 824

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 18/72 (25%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
            A       ++L+       + R              A     +NL    V A       
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 542 REMLGYYKEAIE 553
           ++ L   +  + 
Sbjct: 202 KQALETVQRLLP 213

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 15/118 (12%), Positives = 42/118 (35%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
           +  + L  +               + ++ +   + G    +     +A     +A++++ 
Sbjct: 9   HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           ++A  ++  A  +        A+ +  KA+  D +N +     G        Y+EA +
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ 126

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 11/83 (13%), Positives = 30/83 (36%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G  + + K+  +A  ++ ++++LN N  +     A    +   ++ A            +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           N ++ L      ++      A  
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           +A     EA +  L    +  + N     L+     QA+    K++ L++      L   
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182

Query: 540 TAREMLGYYKEAIE 553
                   Y  A +
Sbjct: 183 DLLYKEREYVPARQ 196

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKK 530
            ++   +   A   Y +A+  +  NA   +N      E   + +A     +A    L  +
Sbjct: 80  VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
             + +   G     +    +A E
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKE 162

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 66/493 (13%), Positives = 133/493 (26%), Gaps = 147/493 (29%)

Query: 139 MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 187
           + G G +  A     +  V       I    +     P     +L        P++ +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 188 SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 223
            H   I +                        L  V     + K          +LL   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 280
                + R   + D       + A     + +              E      +Y D + 
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315

Query: 281 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 329
             L +    TN        E +++ +     ++    +     IES    L+P    ++ 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 330 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
           + L        I   ++       I++++   ++ L K                     +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416

Query: 381 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 419
           + +  +    S+ SI  +    ++               +P  +   D  P  +     S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
            I  H      L  +++      E+  +     L      QK   +      + +  +  
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523

Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 538
            L+ + FY   I    +N   Y     A L+   FL + E +   +   D       LR 
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTD------LLRI 570

Query: 539 GTAREMLGYYKEA 551
               E    ++EA
Sbjct: 571 ALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 68/466 (14%), Positives = 131/466 (28%), Gaps = 144/466 (30%)

Query: 7   NLWVLL----GLG---LAGILLMTKKLKKNIKQDFGAF-------------IEKLQLL-- 44
              VL+    G G   +A  + ++ K++   K DF  F             +E LQ L  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 45  ---PPPQPLP---PKAPHPLTGLSFAVSDLFDIEGY---------VTGFGHPEWARTHSA 89
              P               +  +   +  L   + Y         V              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWN 260

Query: 90  A----------SRTSTVVSTLVEGGATCIGKTVVDE------------FAYSINGTNKHY 127
           A          +R   V   L     T I  ++                   ++   +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLD--CRPQ 316

Query: 128 DTP-----TNPAAPSQMPGGSSSGAAVAVAADLVDF--SLGIDTVGGVRVPSAFCGILG- 179
           D P     TNP   S +        ++       D    +  D +    +  +   +L  
Sbjct: 317 DLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEP 368

Query: 180 --FRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 233
             +R  +     + + P    I T L ++ WF      +  V + L +     ++     
Sbjct: 369 AEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 234 IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK--------- 284
           I     +  LK+  +    +          R ++ H N+ + FDS               
Sbjct: 426 ISIPSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 285 -GFH---KTNGELKNVMRLI-QRYEF-----KNNHNEW--IESVKPAL------------ 320
            G H     + E   + R++   + F     +++   W    S+   L            
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 321 -DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL--KDDGIL 363
            DP     +  +L+    + EN   I ++    +   L  +D+ I 
Sbjct: 537 NDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 48/376 (12%), Positives = 110/376 (29%), Gaps = 119/376 (31%)

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 286
           Q  P+ I+  ++   ++    D V       T +LF   + K E + + F      ++  
Sbjct: 39  QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86

Query: 287 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 340
            + N            Y       +++      E  +P++   +  E  + L     V  
Sbjct: 87  LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 341 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 392
                R +     R A+  L     +L+           G    GK  +       A  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170

Query: 393 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 447
                V    Q  +    ++      ++          +L+ +Q +      +   ++D 
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF--------------- 486
           ++  KL  ++   +    +  +            ++ +   A +                
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 487 -----YTEAIKLNGNNATYYSNRA----AAYLESGSF-LQAEADCT---KAINLDKKNVK 533
                 T  I L+ ++ T   +        YL+     L  E   T   + +++    + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSI----IA 334

Query: 534 AYLRRGTAREMLGYYK 549
             +R G A      +K
Sbjct: 335 ESIRDGLAT--WDNWK 348

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 57/248 (22%)

Query: 327 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           E GE        L +  +  ++N  CK +++  +S +S    D  I+++        +L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68

Query: 377 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 418
                          +E+L  +Y+   F +  I +     Q ++    Y    D+     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123

Query: 419 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 470
              A++   R      ++     L+   ++         K+ ++ +      S ++  + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             + +    WL   +  +    L       Y               + +D +  I L   
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228

Query: 531 NVKAYLRR 538
           +++A LRR
Sbjct: 229 SIQAELRR 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500
            ++ D+A K        ++  +  ++A    + A   ++   A   + E           
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            + +AA ++  G +  AE    +A++ D  + +  +      + LG   E   
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 529 KKNVKAYLRRGTAREMLG 546
             N +A    G A++  G
Sbjct: 74  PNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            +   +  +  +A+  Y EAI+++   A  YSN      E      A    T+AI ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
              A+    +  +  G   EAI 
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIA 132

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 34/83 (40%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
              AY   G   + +   + A++
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQ 98

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 22/92 (23%), Positives = 40/92 (43%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             A+     GN   + +    A+  YT AI++N   A  +SN A+ + +SG+  +A A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             A+ L      AY       +++  + +  E
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A   +N A    E G+  +A     KA+ +  +   A+    +  +  G  +EA+ 
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 10/92 (10%), Positives = 21/92 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q         +                  + L+  +    +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +A +   ++    L  G A E  G  + A  
Sbjct: 81  QQASDAAPEHPGIALWLGHALEDAGQAEAAAA 112

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 13/75 (17%), Positives = 24/75 (32%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
              + +     A++    +   +   A A L  G     E    + + L   + +A  R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 539 GTAREMLGYYKEAIE 553
           G  R     + EA  
Sbjct: 64  GRVRWTQQRHAEAAV 78

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 26/92 (28%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E     G   +  ++  +A     +A      +         A  ++G    A A  
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           T+A  L  +      +    R  L  ++    
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           +   +         A+    E ++         Y     AY + G + +A  +   AI L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 528 DKKNVKAYLRRGTAREMLGYYKEA 551
           +  +     R+     +  Y K+ 
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIE 553
                 +  G    A     + +  +     +AY   G A   LG +++A+ 
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 482 KAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
           +A+ +Y +AI            Y    + +   G + +AEA     +     +    +  
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 539 GTAREMLGYYKEAIE 553
                 LG Y++ +E
Sbjct: 68  AMVLYNLGRYEQGVE 82

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 473 QAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
             ++   ++ KA +     +K   N+       A      G + Q      K        
Sbjct: 35  STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI------- 87

Query: 532 VKAYLRRGTAREMLGYYKEAIE 553
               +   +  E +  YK+AI 
Sbjct: 88  ----IAETSDDETIQSYKQAIL 105

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             +  K     +A++ + E ++ + +    Y +    Y        A     + I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 531 NVKAYLRRGTAREMLGYYKEA 551
                       E+     +A
Sbjct: 74  EGTQK----DLSELQDAKLKA 90

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +       A  +L+  +  +A A   + +  D   V  Y   G   E L    +AI+
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 57.0 bits (137), Expect = 7e-09
 Identities = 12/76 (15%), Positives = 25/76 (32%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
           K   + +++ T  I+    N   + +R           Q        +N D KN  A+  
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 538 RGTAREMLGYYKEAIE 553
           R    +    +   ++
Sbjct: 206 RQWVIQEFKLWDNELQ 221

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLD 528
                 +D++  +A     +AI+LN  N T +  R          L  E +     I   
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
            KN + +  R    E L    + +E
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELE 187

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +       +   + + F  + +  +  N   + +R     E   +        + +  D 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 530 KNVKAYLRRGTA-------------REMLGYYKEAIE 553
           +N   + +R                   + Y  E I+
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 13/73 (17%), Positives = 25/73 (34%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
                      +++ +      + A    +SG +  A         LD  + + +L  G 
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 541 AREMLGYYKEAIE 553
            R+ +G Y  AI 
Sbjct: 64  CRQAMGQYDLAIH 76

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 16/83 (19%), Positives = 26/83 (31%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G       Q+  AI  Y+    ++     +  + A   L+ G   +AE+    A  L   
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
             +          ML   K   E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKE 144

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINL 527
           G        +  ++  Y +A++L G NA  Y+  A       S     Q  A   KA+ L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIE 553
           D   + A +   +   M   Y +AIE
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIE 136

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 11/86 (12%), Positives = 29/86 (33%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
           +   +  ++  +Q    +     +    + I+ N  N+  ++     YL    +  +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLG 546
             +A+ L  +N + Y    T      
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQA 92

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
                +    +    A++   +A + N N     S  A+ +  +  + +AE    K  + 
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 528 DKKNVKA---YLRRGTARE-MLGYYKEAIE 553
           +   V     +LR G  +   +    +AI 
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 16/108 (14%)

Query: 462 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 518
           +S E+  E+G    K    Q  +A   + +A++    N  + S  A A     ++  ++ 
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193

Query: 519 --ADCTKAINLDKKNVKAYLRRGTAREMLG-----------YYKEAIE 553
                 +AI L+  N    +        +              +EA+E
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 19/109 (17%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---------- 513
            ++ +       +  +  KAI    +A++   NNA  +      Y               
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 514 ---------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                       A A   KA   +    +      +   +   Y+EA  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
                + ++  +      EA++          + A  Y       +A     KA+     
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 531 NVKAYLRRGTA-REMLGYYKEAIE 553
           N   + + G   R  +       E
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRE 303

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
           Q Y+ K   KAI  + E +K+N  +            +    LQ  A     ++ +  + 
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAK--MRLSKNGADS 430

Query: 533 KAYLRRGTAREMLGYYKEAIE 553
           +A       +E+    ++A E
Sbjct: 431 EALHVLAFLQELNEKMQQADE 451

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 19/137 (13%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-- 493
           N+        D   K    T   N++  A +        +   Q   A+    +A +L  
Sbjct: 23  NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 494 -------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA--------YLRR 538
                     +   + N A  Y   G     +    K  ++ +K                
Sbjct: 83  QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142

Query: 539 GTAREMLG--YYKEAIE 553
           G  R   G    + A  
Sbjct: 143 GWTRLKCGGNQNERAKV 159

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                 +KQ     +     + L    N +  Y  +A + L  G   ++       I+L+
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
             +   Y+  G   EM G  +EA +
Sbjct: 308 M-SWLNYVLLGKVYEMKGMNREAAD 331

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 3/114 (2%)

Query: 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTF--NQKQSAEIAKEKGNQAYKDKQWLKAIS 485
           + L+D V++    L E+   A  +++            + I + K   A    +  ++  
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
                I L   +   Y      Y   G   +A      A NL       Y    
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIEN 351

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAA 507
           +   A +A     +     ++ +A +    A++++            G +A  ++  A A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 508 YLESGSFLQAEADCTKAINLDKKN-----------VKAYLRRGTAREMLGYYKEAIE 553
                SF +A     KA++   +            + A   R  A + LG   EA+ 
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSF 514
           + + S      +G +  K       +SF+  A+++   +    +  YS    AY     +
Sbjct: 4   SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 515 LQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
            +A       + L     D+    KA    G   ++LG + EAI 
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 108

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESG 512
               +A +A ++  +  +     KA+  Y +A  +  N       A      +   +   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169

Query: 513 SFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
            F +A A   K  ++ K+        K  + +   +     Y  A +
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 11/125 (8%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-- 497
               +A+   K+       +   +A    +        KQ  +A   Y +  + + NN  
Sbjct: 12  EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71

Query: 498 ----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-----AYLRRGTAREMLGYY 548
               A  +        +     +A     KA  +  +N         L R          
Sbjct: 72  LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131

Query: 549 KEAIE 553
            +A+ 
Sbjct: 132 SKAVH 136

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
           G +  K       +SF+  A+++   +    +  YS    AY     + +A       + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 527 L-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
           L     D+    KA    G   ++LG + EAI 
Sbjct: 72  LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 26/119 (21%)

Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN----ATY 500
           +   + A++ G+               +    W  A   + E  +L      +    +  
Sbjct: 50  QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
               A   L  G    A  +  K++       D+  +  A+   G   +      EA +
Sbjct: 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 17/141 (12%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA----KEKGNQAYKDKQWLKAIS 485
           +L+ ++ +     E+    +   L  +    + +  +       +G      +++L AI 
Sbjct: 65  MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124

Query: 486 FYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------V 532
           F+ +A             A ++   + +Y        +     +A  + K++       +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184

Query: 533 KAYLRRGTAREMLGYYKEAIE 553
           + +    T    L  Y++AI 
Sbjct: 185 QCHSLFATNFLDLKQYEDAIS 205

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 504
                  ++ + AE   +     Y  KQ   ++ +  +A ++       N      +S  
Sbjct: 131 SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
           A  +L+   +  A +   KA ++ +         +     G  +     Y++AI 
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 23/117 (19%)

Query: 460 QKQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLNGNN----ATYYS 502
              +++                       +       ++F+  AI+    +    +  YS
Sbjct: 31  HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 503 NRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIE 553
               AY   G + +A       + L     D+    K+    G   +++G + EA  
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
              Y +     ++    +                 +G   +  K++++AI +Y EA K  
Sbjct: 72  GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131

Query: 495 GNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTA 541
                    A ++   A AY        +     +A+++ + +       +++       
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191

Query: 542 REMLGYYKEAIE 553
            +   +Y +A+ 
Sbjct: 192 YDDFKHYDKALP 203

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 13/115 (11%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNR 504
                  +  Q+  I     N   ++    K I  + + +K           +     N 
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIE 553
           A A      + ++     KAI +  +        + Y +RG     L Y +  IE
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	554
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.33
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.33
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.33
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.28
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.26
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.25
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.23
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.22
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.2
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.2
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.16
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.15
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.15
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.04
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.03
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.03
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.03
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.02
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.0
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.98
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.98
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.96
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.95
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.95
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.91
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.9
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.81
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.79
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.73
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.72
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.7
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.69
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.68
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.59
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.57
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.56
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.5
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.49
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.48
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.47
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.45
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.43
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.42
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.35
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.28
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.26
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.19
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.95
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.94
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.86
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.84
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.81
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.79
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.65
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.54
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.51
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.39
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.38
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.19
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.1
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.27
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.54
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.97
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.63
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.43
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.06
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.94
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.81
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.8
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	86.19
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.9
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.47
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	82.47
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	81.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.42

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=7.1e-90  Score=705.74  Aligned_cols=404  Identities=26%  Similarity=0.338  Sum_probs=340.4

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCC
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG   73 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g   73 (554)
                      ++.+|+++++.+|     .    ++|  +.|+ +|||++..+++++++|+       +++..||||||||+|||+|+++|
T Consensus         2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   80 (434)
T 2dc0_A            2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG   80 (434)
T ss_dssp             CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence            5667777765544     2    343  6789 99999987766655442       35678999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 008755           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (554)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaa  153 (554)
                      ++||+||+.| .  .++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus        81 ~~tt~Gs~~~-~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa  157 (434)
T 2dc0_A           81 MPTRAGTKAP-L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL  157 (434)
T ss_dssp             BCCCTTCSSC-C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred             cccCCCCccc-C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence            9999999998 3  233899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCCc
Q 008755          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSPR  231 (554)
Q Consensus       154 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~~--~~~~  231 (554)
                      |++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+. ..++  .++.
T Consensus       158 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~l  236 (434)
T 2dc0_A          158 GIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNP  236 (434)
T ss_dssp             TSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSC
T ss_pred             CCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999876 3332  3466


Q ss_pred             eEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhh
Q 008755          232 QIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH  309 (554)
Q Consensus       232 ~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~  309 (554)
                      ||++..+.+.  ...++++.++++++++.|.  |++|++ .++        | +.+.       ...+..+...|.+..+
T Consensus       237 rig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p-~~~~-------~~~~~~~~~~e~~~~~  297 (434)
T 2dc0_A          237 VFGVPLDFLE--GRLGVEVRKAFTRLLEDLPALRAEVRE-VSL--------P-LEGV-------YEVYTRLVRYEAARIH  297 (434)
T ss_dssp             EEEECHHHHT--TCSCHHHHHHHHHHHHHTTTTTCEEEE-CCC--------C-CTTH-------HHHHHHHHHHHHHHHS
T ss_pred             EEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------C-cHHH-------HHHHHHHHHHHHHHHH
Confidence            7777665432  3358899999999999986  776643 222        2 2211       1223334455666667


Q ss_pred             HHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCC-----chHH
Q 008755          310 NEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM-----LSED  384 (554)
Q Consensus       310 ~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~-----~~~~  384 (554)
                      .+++....+.++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++....     ....
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~  377 (434)
T 2dc0_A          298 EKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGH  377 (434)
T ss_dssp             HHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEH
T ss_pred             HHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhh
Confidence            77776667789999999999999999999999999999999999999999999999999999999986421     1111


Q ss_pred             HHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008755          385 YQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (554)
Q Consensus       385 ~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~  440 (554)
                      + ..+..||.++|++|+|+||||+|+.+|+|+|+|+++++++|..++++++.+|+.
T Consensus       378 ~-~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          378 R-EAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             H-HHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             h-hhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            2 234568999999999999999998889999999999999999999999999864

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=8.1e-89  Score=708.47  Aligned_cols=413  Identities=22%  Similarity=0.277  Sum_probs=334.5

Q ss_pred             hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCC--------CCCCCCCCCCCceeeecc
Q 008755            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSD   67 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~pL~Gvp~~vKD   67 (554)
                      +++.+|+++|+++++.+|     .    ++|  +.|+.+|||++..+++++++|        ++++. ||||||||+|||
T Consensus         2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD   80 (485)
T 3ip4_A            2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD   80 (485)
T ss_dssp             CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence            466788999999977665     2    243  778999999998876655443        33556 999999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhH
Q 008755           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (554)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGs  147 (554)
                      +|+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||
T Consensus        81 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs  158 (485)
T 3ip4_A           81 NIITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS  158 (485)
T ss_dssp             TBCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred             CcccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence            999999999999999876  478999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008755          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (554)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-  226 (554)
                      ||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~  238 (485)
T 3ip4_A          159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS  238 (485)
T ss_dssp             HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCT
T ss_pred             HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765322 


Q ss_pred             ----------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhh
Q 008755          227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK  288 (554)
Q Consensus       227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~  288 (554)
                                      ..++.||++..+++.  ...++++.++++++++.|.  |++|++ .++        |.+...  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~--  305 (485)
T 3ip4_A          239 TSAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG--  305 (485)
T ss_dssp             TSCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH--
T ss_pred             cccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH--
Confidence                            124567777665432  2357899999999999986  887743 222        222211  


Q ss_pred             hhhhHHHHHHHHHHHHHHhhh------------------HH-HHhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHH
Q 008755          289 TNGELKNVMRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKS  344 (554)
Q Consensus       289 ~~~~~~~~~~~~~~~e~~~~~------------------~~-~~~~~~~~~~p~~~~~~~~g~~-----~s~~~~~~a~~  344 (554)
                           ...+..+...|+...+                  .+ +.......+++.++.++..+..     ....+|.++++
T Consensus       306 -----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~  380 (485)
T 3ip4_A          306 -----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQK  380 (485)
T ss_dssp             -----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHH
Confidence                 1112222222322211                  11 1122234678888888876642     22245889999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEecc
Q 008755          345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARH  424 (554)
Q Consensus       345 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~  424 (554)
                      .|..+++.+.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+||||+|+.+|+|+|+|+++++
T Consensus       381 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~  459 (485)
T 3ip4_A          381 VRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKP  459 (485)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECST
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCC
Confidence            999999999999999999999999999999987533222111 1223899999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 008755          425 GGDRFLLDTVQNMYASL  441 (554)
Q Consensus       425 ~~d~~ll~~a~~le~~l  441 (554)
                      ++|..|+++++++|+..
T Consensus       460 ~~d~~lL~~A~~lE~~~  476 (485)
T 3ip4_A          460 FDEKTLYRVAYQYETQY  476 (485)
T ss_dssp             TCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998754

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=4.1e-88  Score=699.33  Aligned_cols=413  Identities=24%  Similarity=0.321  Sum_probs=334.6

Q ss_pred             hHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCC-CCCCCCCceeeeccccccCCcc
Q 008755            8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDLFDIEGYV   75 (554)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~pL~Gvp~~vKD~~~~~g~~   75 (554)
                      |+.+|+++|+++++.+|     .    ++|  +.|+.+|||++..+++++++|++-+ ..||||||||+|||+|+++|++
T Consensus         2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~   81 (478)
T 3h0l_A            2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEK   81 (478)
T ss_dssp             CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSB
T ss_pred             CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCC
Confidence            45678899999877665     2    243  7789999999988776655543322 2799999999999999999999


Q ss_pred             cCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCC
Q 008755           76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL  155 (554)
Q Consensus        76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~  155 (554)
                      ||+||+.+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+|||||||||++||+|+
T Consensus        82 tt~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~  159 (478)
T 3h0l_A           82 TTCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLS  159 (478)
T ss_dssp             CCTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTS
T ss_pred             cCCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCC
Confidence            9999999876  47889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------
Q 008755          156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------  226 (554)
Q Consensus       156 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~---------  226 (554)
                      +|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+         
T Consensus       160 ~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~  239 (478)
T 3h0l_A          160 APVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVP  239 (478)
T ss_dssp             SSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCC
T ss_pred             CceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998765332         


Q ss_pred             --------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHH
Q 008755          227 --------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (554)
Q Consensus       227 --------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~  296 (554)
                              ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ .++        |.+...       ...
T Consensus       240 ~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~--------p~~~~~-------~~~  301 (478)
T 3h0l_A          240 EWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VSL--------PHVKYS-------IPT  301 (478)
T ss_dssp             CHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHH
T ss_pred             chhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH-------HHH
Confidence                    134567777665432  3358899999999999986  877743 222        222211       112


Q ss_pred             HHHHHHHHHHhhh------------------HH-HHhhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHH
Q 008755          297 MRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSA  352 (554)
Q Consensus       297 ~~~~~~~e~~~~~------------------~~-~~~~~~~~~~p~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~  352 (554)
                      +..+...|++..+                  .+ +...+...+++.++.++..+..     ....+|.++++.|..+++.
T Consensus       302 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~  381 (478)
T 3h0l_A          302 YYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITND  381 (478)
T ss_dssp             HHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHH
Confidence            2222222332211                  11 1122234578888888877652     2234688999999999999


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHH
Q 008755          353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD  432 (554)
Q Consensus       353 ~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~  432 (554)
                      +.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+||||+|+.+|+|+|+|+++++++|..+++
T Consensus       382 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~  460 (478)
T 3h0l_A          382 FLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQ  460 (478)
T ss_dssp             HHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHH
T ss_pred             HHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHH
Confidence            9999999999999999999999987533322111 122489999999999999999998999999999999999999999


Q ss_pred             HHHHHHHHH
Q 008755          433 TVQNMYASL  441 (554)
Q Consensus       433 ~a~~le~~l  441 (554)
                      ++.++|+..
T Consensus       461 ~A~~lE~~~  469 (478)
T 3h0l_A          461 ISYLWEQKF  469 (478)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999998754

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=6.2e-88  Score=695.78  Aligned_cols=405  Identities=24%  Similarity=0.349  Sum_probs=329.6

Q ss_pred             hhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCCh
Q 008755           13 GLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP   81 (554)
Q Consensus        13 ~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~   81 (554)
                      +++|+++++.+|     .    ++|  +.|+.+|||++.. ++++++|++-+...|||||||+|||+|+++|++||+||+
T Consensus         3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~   81 (471)
T 3kfu_E            3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR   81 (471)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence            566676655444     2    343  7789999999998 877776654444459999999999999999999999999


Q ss_pred             hhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccccc
Q 008755           82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG  161 (554)
Q Consensus        82 ~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~G  161 (554)
                      .+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+|||||||||++||+|++|+|+|
T Consensus        82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G  159 (471)
T 3kfu_E           82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG  159 (471)
T ss_dssp             TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred             hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence            9876  47889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008755          162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------------  226 (554)
Q Consensus       162 tD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~---------------  226 (554)
                      ||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+               
T Consensus       160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~  239 (471)
T 3kfu_E          160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE  239 (471)
T ss_dssp             EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred             cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999988754322               


Q ss_pred             -CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHH
Q 008755          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (554)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (554)
                       ..++.||++..+.+   ...++++.++++++++.|.  |++|++ .+        +|.+...       ...+..+...
T Consensus       240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~  300 (471)
T 3kfu_E          240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA  300 (471)
T ss_dssp             CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred             cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence             12456777766543   3357899999999999986  777643 22        2322221       1122222222


Q ss_pred             HHHhh-----------------hHHHHhhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 008755          304 EFKNN-----------------HNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG  361 (554)
Q Consensus       304 e~~~~-----------------~~~~~~~~~~~~~p~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D  361 (554)
                      |++..                 +.+++...+..+++.++.++..+..+     +..+|.++++.|..+++.|.++|+++|
T Consensus       301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  380 (471)
T 3kfu_E          301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD  380 (471)
T ss_dssp             HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            32221                 22233322334899999988776543     335899999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       362 ~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      +||+||+|.+||+++....+...+..  ..||.++|++|+|+||||+|+.+|+|+|+|+++++++|..+++++.++|+..
T Consensus       381 vll~Pt~~~~a~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~  458 (471)
T 3kfu_E          381 LLLLPTTPHPAFPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT  458 (471)
T ss_dssp             EEEEESCSSSCCBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             EEEeCCcCCCCCccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999865332222221  2389999999999999999998899999999999999999999999998653

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=7e-87  Score=678.63  Aligned_cols=393  Identities=22%  Similarity=0.270  Sum_probs=332.8

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCC
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs   80 (554)
                      |+.+|+++++.+|     .    ++|  +.|+.+|||++..++++ +     ...||||||||+|||+|+++|++||+||
T Consensus         3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (414)
T 1o9p_A            3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS   76 (414)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence            5677777766554     1    343  67899999999887765 2     4579999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcccc
Q 008755           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (554)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (554)
                      +.|.+  .++.+||++|+|||++|||++||||||||++    .|+  |+|+||||++|+||||||||||+||+|++|+|+
T Consensus        77 ~~~~~--~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al  148 (414)
T 1o9p_A           77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL  148 (414)
T ss_dssp             GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             Hhhcc--CCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence            99986  4788999999999999999999999999998    444  999999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008755          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD  237 (554)
Q Consensus       161 GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~---~~~~~~~l~i~~  237 (554)
                      |||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..   ...++.||++..
T Consensus       149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~  228 (414)
T 1o9p_A          149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (414)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999998876421   123566787765


Q ss_pred             chhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhh
Q 008755          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (554)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  315 (554)
                      +.+.  ...++++.++++++++.|.  |++|++ .+        .|.....      +...+..+..+|.+..+..++..
T Consensus       229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~~  291 (414)
T 1o9p_A          229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVHE------AWRIHPIIQDFEAHRALAWEFSE  291 (414)
T ss_dssp             CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHHH------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            5432  3357899999999999886  777643 11        2211100      22233345556777777777777


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008755          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (554)
Q Consensus       316 ~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (554)
                      ....++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||++.++|+++......       ..||.+
T Consensus       292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~-------~~~t~~  364 (414)
T 1o9p_A          292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGD-------PRYNRL  364 (414)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCC-------GGGTHH
T ss_pred             ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCcc-------cchhhh
Confidence            7778999999999999999999999999999999999999999999999999999999986432111       258999


Q ss_pred             ccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       396 ~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      +|++|+|+||||+|+..|+|+|+|+++++++|..++++++.+|+.+.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            99999999999999866999999999999999999999999997654

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=1.7e-87  Score=700.77  Aligned_cols=417  Identities=18%  Similarity=0.231  Sum_probs=340.9

Q ss_pred             hhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeecccc-ccCCc
Q 008755            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY   74 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~-~~~g~   74 (554)
                      +++. |+.+|+++++.++     .    ++|  +.|+.+|||++...++++++|++ + .||||||||+|||+| +++|+
T Consensus         5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~   81 (493)
T 3a2q_A            5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD   81 (493)
T ss_dssp             CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred             hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence            4556 8999999977665     2    343  67899999999887766665544 3 799999999999999 99999


Q ss_pred             ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (554)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag  154 (554)
                      +||+||+.+...++++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|
T Consensus        82 ~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG  161 (493)
T 3a2q_A           82 INTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAA  161 (493)
T ss_dssp             BCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred             cccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcC
Confidence            99999999982124789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCc--c-ccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----
Q 008755          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----  226 (554)
Q Consensus       155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~--~-p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-----  226 (554)
                      ++|+|+|||||||||+||+||||||||||+||||+.|+  + ++++++|++|||||+++|+..+++++.+.+..+     
T Consensus       162 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~  241 (493)
T 3a2q_A          162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP  241 (493)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCC
T ss_pred             CCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccccc
Confidence            99999999999999999999999999999999999998  5 888899999999999999999999998754322     


Q ss_pred             ------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhh
Q 008755          227 ------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE  292 (554)
Q Consensus       227 ------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~  292 (554)
                                  ..++.||++..+.+......++++.++++++++.|.  |++|++ .++.        .+..     ..
T Consensus       242 ~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~--------~~~~-----~~  307 (493)
T 3a2q_A          242 TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYPE--------ALGD-----RS  307 (493)
T ss_dssp             CCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCCG--------GGGC-----CT
T ss_pred             CCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------ccCH-----HH
Confidence                        124557777655431012357899999999999886  887744 2221        1110     00


Q ss_pred             HHHHHHHHHHHHHHh---hhHHHHh--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEc
Q 008755          293 LKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILVTP  366 (554)
Q Consensus       293 ~~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~D~ll~P  366 (554)
                      +...+..+...|++.   .+..++.  .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+||+|
T Consensus       308 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~P  387 (493)
T 3a2q_A          308 FLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP  387 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Confidence            111222333334433   2333342  2345789999999999999999999999999999999999999 999999999


Q ss_pred             CCCCCCCCCCCCCCc------------hHHHHHHHhhhhhcccccCCceecccCCCC-CCCCceeEEEeccCCcHHHHHH
Q 008755          367 TTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT  433 (554)
Q Consensus       367 t~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~g~p~g~~~~~~~~~d~~ll~~  433 (554)
                      |++.+||+++.....            ...+ ..+..||.++|++|+|+||||+|+. +|+|+|+|+++++++|..++++
T Consensus       388 t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~  466 (493)
T 3a2q_A          388 TVTRQTPEIGELMLAKGTDLEGRQSAFISGS-LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQV  466 (493)
T ss_dssp             SCSSCCCBTTTTCCCTTCCCCSSCGGGSHHH-HHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHH
T ss_pred             CCCCCCCCCcccccccccccccccchhhhhh-hhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHH
Confidence            999999999865321            1112 2345689999999999999999975 8999999999999999999999


Q ss_pred             HHHHHHHH
Q 008755          434 VQNMYASL  441 (554)
Q Consensus       434 a~~le~~l  441 (554)
                      ++.+|+..
T Consensus       467 A~~lE~~~  474 (493)
T 3a2q_A          467 AAQLEGAL  474 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99998764

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=1.3e-86  Score=691.19  Aligned_cols=407  Identities=21%  Similarity=0.288  Sum_probs=325.5

Q ss_pred             hhHHHhhhhhh--hhHHHHHH----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCC
Q 008755            7 NLWVLLGLGLA--GILLMTKK----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF   78 (554)
Q Consensus         7 ~~~~~~~~~~~--~~~~~~~~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~   78 (554)
                      +++.+++.+|-  +.++..|.    ++|  +.|+.+|||++..+++++++     . ||||||||+|||+|+++|++||+
T Consensus         6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~   79 (476)
T 2gi3_A            6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTC   79 (476)
T ss_dssp             CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred             ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCc
Confidence            45556666661  11333333    343  67899999999988877621     2 99999999999999999999999


Q ss_pred             CChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcc
Q 008755           79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF  158 (554)
Q Consensus        79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~  158 (554)
                      ||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+
T Consensus        80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~  157 (476)
T 2gi3_A           80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA  157 (476)
T ss_dssp             TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred             cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence            9999976  47889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008755          159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------  226 (554)
Q Consensus       159 a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~------------  226 (554)
                      |+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+            
T Consensus       158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~  237 (476)
T 2gi3_A          158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS  237 (476)
T ss_dssp             EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred             EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999988754322            


Q ss_pred             ----CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHH
Q 008755          227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI  300 (554)
Q Consensus       227 ----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~  300 (554)
                          ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ .++        |.+....       ..+..+
T Consensus       238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~-------~~~~~~  299 (476)
T 2gi3_A          238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYSV-------ATYYVI  299 (476)
T ss_dssp             TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHH-------HHHHHH
T ss_pred             hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHH-------HHHHHH
Confidence                124567777665432  3357899999999999886  887754 222        2221111       111112


Q ss_pred             HHHHHHhhh-----------------HHHHh-hhCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008755          301 QRYEFKNNH-----------------NEWIE-SVKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL  357 (554)
Q Consensus       301 ~~~e~~~~~-----------------~~~~~-~~~~~~~p~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~  357 (554)
                      ...|.+..+                 .+++. ...+.+++.++.++..+..++.     .+|.++++.|..+++.+.++|
T Consensus       300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~  379 (476)
T 2gi3_A          300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL  379 (476)
T ss_dssp             HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222211                 11222 1234678888888887765443     378899999999999999999


Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHH
Q 008755          358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM  437 (554)
Q Consensus       358 ~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~l  437 (554)
                      +++|+||+||+|.+||+++........+.  ...||.++|++|+|+||||+|+.+|+|+|+|+++++++|..|+++++++
T Consensus       380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l  457 (476)
T 2gi3_A          380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI  457 (476)
T ss_dssp             HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            99999999999999999986212222222  1358999999999999999999899999999999999999999999999


Q ss_pred             HHHH
Q 008755          438 YASL  441 (554)
Q Consensus       438 e~~l  441 (554)
                      |+..
T Consensus       458 E~~~  461 (476)
T 2gi3_A          458 EKNS  461 (476)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=6.1e-86  Score=689.87  Aligned_cols=407  Identities=23%  Similarity=0.270  Sum_probs=327.5

Q ss_pred             ccchhHHHhhhhhhhhHHHHH-----H----Hhh--hcc---CCcCceeeccccCCCCCCC-------CCCCCCCCCCce
Q 008755            4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLS   62 (554)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp   62 (554)
                      +.-++..+++.+|+++++.++     .    ++|  +.|   |.+|||++..++ ++++|+       +++..|||||||
T Consensus         4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvP   82 (503)
T 1m22_A            4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIP   82 (503)
T ss_dssp             -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCE
T ss_pred             CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCce
Confidence            344677889999999977665     2    343  667   999999998776 655442       356679999999


Q ss_pred             eeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCcccccc-----ccCCCCCCCCCCCCCCCCC
Q 008755           63 FAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPS  137 (554)
Q Consensus        63 ~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~g~~~NP~~~~  137 (554)
                      |+|||+|+++|++||+||+.+.+  +++ +||++|+|||++|||++||||||||++     +.+|+|++||+|+||||++
T Consensus        83 i~vKD~~~v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~  159 (503)
T 1m22_A           83 LLLKDNINAAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS  159 (503)
T ss_dssp             EEEETTBCCTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred             eEeecccccCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999986  478 999999999999999999999999998     7789999999999999999


Q ss_pred             CCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHH
Q 008755          138 QMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGH  217 (554)
Q Consensus       138 ~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~  217 (554)
                      |+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++
T Consensus       160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~  239 (503)
T 1m22_A          160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT  239 (503)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccc---------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcc
Q 008755          218 VLLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE  274 (554)
Q Consensus       218 ~l~~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~  274 (554)
                      ++.+.+..+                     ..++.||++..+.+.    .++++.++++++++.|.  |++|++ .++. 
T Consensus       240 vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-  313 (503)
T 1m22_A          240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VELP-  313 (503)
T ss_dssp             HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECCT-
T ss_pred             HHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEEE-eCCC-
Confidence            988654222                     124567777665431    46788899999998886  888753 2222 


Q ss_pred             cccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHh---------------------hhCCCCCHHHHHHHHHhhc
Q 008755          275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLE  333 (554)
Q Consensus       275 ~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------~~~~~~~p~~~~~~~~g~~  333 (554)
                             .+.++..       .+..+..+|++..+..|+.                     .....+++.++.++..+..
T Consensus       314 -------~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (503)
T 1m22_A          314 -------NQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAG  379 (503)
T ss_dssp             -------TTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCC
T ss_pred             -------cHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCC
Confidence                   1111100       0011111122211111111                     1234678889999988888


Q ss_pred             CCHHHHHHHHHHHHHHHHH--HHhhcCC--CcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCC
Q 008755          334 ISETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG  409 (554)
Q Consensus       334 ~s~~~~~~a~~~r~~~~~~--~~~~~~~--~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  409 (554)
                      ++..+|.++++.|..+++.  +.++|++  +|+||+||+ .++|+++.....   +   ...||.++|++|+|+||||+|
T Consensus       380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g  452 (503)
T 1m22_A          380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMG  452 (503)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEeccc
Confidence            9999999999888888776  9999974  999999999 567776522111   1   145899999999999999999


Q ss_pred             CCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       410 ~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      +.+|+|+|+|+++++++|..|++++..+|+..
T Consensus       453 ~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~  484 (503)
T 1m22_A          453 QIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT  484 (503)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence            98999999999999999999999999999764

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=6.7e-85  Score=681.43  Aligned_cols=376  Identities=23%  Similarity=0.298  Sum_probs=308.2

Q ss_pred             CCCCCCCCCceeeeccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCC
Q 008755           52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT  131 (554)
Q Consensus        52 ~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~  131 (554)
                      +...||||||||+|||||+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+
T Consensus        82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~  159 (521)
T 3a1k_A           82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR  159 (521)
T ss_dssp             CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred             CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence            4567999999999999999999999999999976  47899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHH
Q 008755          132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI  211 (554)
Q Consensus       132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~d  211 (554)
                      ||||++|+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|
T Consensus       160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D  239 (521)
T 3a1k_A          160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD  239 (521)
T ss_dssp             ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred             CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcccC------------------CCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceecc
Q 008755          212 LRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN  271 (554)
Q Consensus       212 l~~v~~~l~~~~~~~~------------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~  271 (554)
                      +..+++++.+.+..++                  .++.||++..+.+. ....++++.++++++++.|.  |++|++ .+
T Consensus       240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~  317 (521)
T 3a1k_A          240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFG-HAVSQPEVDDAVRAAAHSLTEIGCTVEE-VN  317 (521)
T ss_dssp             HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSC-CSSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred             HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECcccc-ccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence            9999999987543221                  23457777655432 12247889999999999886  777643 22


Q ss_pred             CcccccccCCChhhHhhhhhhH--HHHHHHH-------------HHHHHHhhhHHHHhhhCCCCCHHHHHHHHHhh----
Q 008755          272 LGEYFDSKVPSLKGFHKTNGEL--KNVMRLI-------------QRYEFKNNHNEWIESVKPALDPDISAEIGEML----  332 (554)
Q Consensus       272 l~~~v~~~~p~~~~~~~~~~~~--~~~~~~~-------------~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~----  332 (554)
                      +        |.+......+..+  ......+             ...+....+..|...+...+.|.++.++..|.    
T Consensus       318 ~--------p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~  389 (521)
T 3a1k_A          318 I--------PWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT  389 (521)
T ss_dssp             C--------THHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred             C--------CchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence            2        2221110000000  0000000             00122223444455556678999999887764    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHH---HhhhhhcccccCCceecccCC
Q 008755          333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG  409 (554)
Q Consensus       333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~nl~G~PaisvP~g  409 (554)
                      .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+...+..+   +..||.++|++|+|+||||+|
T Consensus       390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  469 (521)
T 3a1k_A          390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG  469 (521)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence            36778999999999999999999999999999999999999998754333333333   235799999999999999999


Q ss_pred             CCCCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008755          410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (554)
Q Consensus       410 ~~~g~p~g~~~~~~~~~d~~ll~~a~~le~  439 (554)
                      +.+|+|+|+|+++++++|..+++++.++|+
T Consensus       470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~  499 (521)
T 3a1k_A          470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK  499 (521)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999987

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=9e-82  Score=659.26  Aligned_cols=418  Identities=20%  Similarity=0.222  Sum_probs=322.8

Q ss_pred             chhHHHhhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCc
Q 008755            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY   74 (554)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~   74 (554)
                      .+++.+|+++|+++++.++     .    ++|  +.|+.+|||++.+++. .+++.+....||||||||+|||+|+++|+
T Consensus        66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G~  144 (573)
T 3ppm_A           66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKGH  144 (573)
T ss_dssp             HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBTC
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCCC
Confidence            5688899999999977665     2    233  7789999999987542 22222223359999999999999999999


Q ss_pred             ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (554)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag  154 (554)
                      +||+||..+.+  .++.+||++|+||+++|||++||||||||+++..++|+.||+|+||||++++||||||||||+||+|
T Consensus       145 ~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag  222 (573)
T 3ppm_A          145 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG  222 (573)
T ss_dssp             CCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTT
T ss_pred             CcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcC
Confidence            99999999976  4789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCccccCCC----CCcccccccCHHHHHHHHHHhcCCC-------
Q 008755          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP-------  223 (554)
Q Consensus       155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s----~d~~G~~ar~~~dl~~v~~~l~~~~-------  223 (554)
                      ++++|+|||||||||+||+||||||||||+||||+.|++|.+++    +|++|||||+++|+..+++++.+.+       
T Consensus       223 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~  302 (573)
T 3ppm_A          223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT  302 (573)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTT
T ss_pred             CCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCC
Confidence            99999999999999999999999999999999999999998765    8999999999999999998876532       


Q ss_pred             -----cc----cCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhh--
Q 008755          224 -----FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN--  290 (554)
Q Consensus       224 -----~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~--  290 (554)
                           +.    ...++.||++..+..  ...+++++.++++++++.|.  |++|++ .+        .|.+.+.....  
T Consensus       303 ~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~  371 (573)
T 3ppm_A          303 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FL--------PNNIPYALEVLST  371 (573)
T ss_dssp             SCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CTTHHHHHHTHHH
T ss_pred             CCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CccHHHHHHHHHH
Confidence                 11    123566777765432  23357899999999999986  888754 22        22222111000  


Q ss_pred             ----hh-HHHHHHHHHHHHHH--------------hhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 008755          291 ----GE-LKNVMRLIQRYEFK--------------NNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRS  351 (554)
Q Consensus       291 ----~~-~~~~~~~~~~~e~~--------------~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~  351 (554)
                          .+ .......+.. |..              .....++......+.|.+...+..+...+..++++.+..|..+++
T Consensus       372 ~~~~~dg~~~~~~~~~~-e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~  450 (573)
T 3ppm_A          372 GGLFSDGGRSFLQNFKG-DFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQ  450 (573)
T ss_dssp             HHHTTBTTHHHHGGGTT-SCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHhcc-CcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence                00 0000000000 000              000000000112344555555666677899999999999999999


Q ss_pred             HHHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC------------------
Q 008755          352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY------------------  411 (554)
Q Consensus       352 ~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~------------------  411 (554)
                      +|.+.|+  ++|+||+|+ +.++++++.....     .....||.+||++|+|+++||+|+.                  
T Consensus       451 ~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~-----~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~  524 (573)
T 3ppm_A          451 SVIAQWKAMNLDVLLTPM-LGPALDLNTPGRA-----TGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDI  524 (573)
T ss_dssp             HHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSH
T ss_pred             HHHHHHhhcCCCEeeCCC-CCCCcCCcccccc-----ccccchhhhhHhhCCCeEEEecccccccccccccccccccchh
Confidence            9999995  599999999 5588888742110     1235689999999999999999853                  


Q ss_pred             ------------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008755          412 ------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ  444 (554)
Q Consensus       412 ------------~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~~~  444 (554)
                                  +|+|+|+|+++++++|+.++.+++.+|+.++..
T Consensus       525 ~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~  569 (573)
T 3ppm_A          525 WDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ  569 (573)
T ss_dssp             HHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence                        599999999999999999999999999876543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.69  E-value=3.5e-16  Score=132.40  Aligned_cols=96  Identities=32%  Similarity=0.496  Sum_probs=93.3

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|+.++.++++|+.+++.|+|++|+..|+++|+++|+++.+|+++|.+|+++|++++|+.+|+++++++|++..+|++
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..+|++++|++
T Consensus        87 lg~~~~~~~~~~~A~~  102 (126)
T 4gco_A           87 KAACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHH
Confidence            9999999999999975

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.65  E-value=1.3e-15  Score=132.94  Aligned_cols=103  Identities=18%  Similarity=0.102  Sum_probs=98.4

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+......+|+++..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+.+|+|++|+..|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            44566677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.+++++|.+|..+|++++|++
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999975

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.58  E-value=1.2e-14  Score=125.59  Aligned_cols=92  Identities=20%  Similarity=0.187  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL--  527 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l--  527 (554)
                      ..+..++++|+.+++.|+|++|+..|+++|+++|+       +..     +|+|+|.++.++|+|++|+.+|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46778999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCHHHHhc
Q 008755          528 -----DKKNVKAY----LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 -----~p~~~~~~----~~~g~~~~~~~~~~~A~~  553 (554)
                           +|++.++|    |++|.+|..+|++++|++
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence                 99999999    999999999999999986

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=1.8e-14  Score=121.99  Aligned_cols=93  Identities=34%  Similarity=0.521  Sum_probs=87.8

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK  533 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~  533 (554)
                      ++.+.++.++|+.+++.|+|++|+.+|+++|+++|++..+|+++|.+|+++|+|++|+.+|+++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999876       45


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|+++|.++..++++++|++
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~  104 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQ  104 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            89999999999999999975

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=6e-14  Score=118.20  Aligned_cols=93  Identities=41%  Similarity=0.557  Sum_probs=89.6

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      |.++..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+++|+|++|+.+|+++++++|++..+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|++
T Consensus        81 ~~~~~~~~~~A~~   93 (126)
T 3upv_A           81 AQIAVKEYASALE   93 (126)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHHhCHHHHHH
Confidence            9999999999975

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=2e-14  Score=125.58  Aligned_cols=96  Identities=10%  Similarity=-0.013  Sum_probs=90.6

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|+++..++.+|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|.++|++++|+..|+++++++|+++.+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            34557888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHh
Q 008755          537 RRGTAREMLGYYKEAI  552 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~  552 (554)
                      ++|.+|..+|++++|.
T Consensus       104 ~la~~~~~~~~~~~aa  119 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRA  119 (150)
T ss_dssp             HHHHHHHHHCSSSSHH
T ss_pred             HHHHHHHHcCChHHHH
Confidence            9999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=7e-14  Score=121.75  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ...+|++...++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ++|.+|..+|++++|++
T Consensus        94 ~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           94 HAAECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            99999999999999975

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.52  E-value=1.2e-13  Score=119.13  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      ......+|++...++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.
T Consensus         8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A            8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|.+|..+|++++|++
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           88 FPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999974

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=2.8e-13  Score=119.90  Aligned_cols=96  Identities=39%  Similarity=0.485  Sum_probs=91.0

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...+.++..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+++|+|++|+.+|+++++++|++..++++
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.+|..+|++++|++
T Consensus        85 lg~~~~~~g~~~~A~~  100 (164)
T 3sz7_A           85 LGLARFDMADYKGAKE  100 (164)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHccCHHHHHH
Confidence            9999999999999975

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=2.1e-13  Score=120.47  Aligned_cols=93  Identities=30%  Similarity=0.454  Sum_probs=87.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT  522 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  522 (554)
                      .+.+..+..+|+.+++.|+|++|+..|+++|++                  +|.+..+|+++|.||+++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            467889999999999999999999999999999                  77788999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++++++|++..+|+++|.+|..+|++++|++
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  118 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEE  118 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence            9999999999999999999999999999975

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=7.9e-13  Score=110.70  Aligned_cols=90  Identities=13%  Similarity=0.008  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...++.+|..+++.|++++|+..|+++++.+|++..+|+++|.++..+|++++|+..|+++++++|++..+++++|.+|.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      .+|++++|++
T Consensus        97 ~~g~~~~A~~  106 (121)
T 1hxi_A           97 NEHNANAALA  106 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HcCCHHHHHH
Confidence            9999999974

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.43  E-value=8.9e-13  Score=111.25  Aligned_cols=93  Identities=14%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ...+...+..+|.++..|+++|.++++.|++++|+..|+++|+++|++..+|+++|.+|..+|+|++|+.+|+++++++|
T Consensus        33 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           33 MRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            33444455667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 008755          530 KNVKAYLRRGTAR  542 (554)
Q Consensus       530 ~~~~~~~~~g~~~  542 (554)
                      ++.+++..++.++
T Consensus       113 ~~~~a~~~l~~~l  125 (126)
T 4gco_A          113 SNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999998774

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.42  E-value=1.6e-12  Score=110.82  Aligned_cols=94  Identities=37%  Similarity=0.507  Sum_probs=90.0

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ++.++..++.+|..++..|+|++|+..|+++++++|++..+|+++|.+++.+++|++|+..++++++++|++..+++++|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus        85 ~~~~~~~~~~~A~~   98 (137)
T 3q49_B           85 QCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999999999974

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=8.9e-13  Score=107.80  Aligned_cols=91  Identities=25%  Similarity=0.363  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL  536 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~  536 (554)
                      ++..++.+|..++..|+|++|+..|+++++++|+++.+++++|.+|+++|+|++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ++|.++..+|++++|++
T Consensus        83 ~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHhHhhhHh
Confidence            99999999999887764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.39  E-value=1.7e-12  Score=120.77  Aligned_cols=99  Identities=17%  Similarity=0.049  Sum_probs=76.5

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFLQAEADCTK  523 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~  523 (554)
                      ..+..+|+++..++.+|..+.+.|++++|+..|+++++++|++..+++++|.++..+           |++++|+..|++
T Consensus        30 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  109 (217)
T 2pl2_A           30 RALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD  109 (217)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence            334456677777888888888888888888888888888888877888888888777           778888888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       524 al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|++..+++++|.++..+|++++|++
T Consensus       110 al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A          110 AERVNPRYAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence            888888877778888888878887777764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.38  E-value=1.2e-12  Score=142.89  Aligned_cols=100  Identities=20%  Similarity=0.128  Sum_probs=80.1

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      .+.++.+|+++.+++++|.++.+.|++++|+.+|+++|+++|++..+|+++|.+|.++|++++|++.|+++++++|++..
T Consensus        33 ~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~  112 (723)
T 4gyw_A           33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD  112 (723)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            33445566777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|.+|..+|++++|++
T Consensus       113 a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A          113 AHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888888764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=2.6e-12  Score=140.17  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|+++++++++|+++.++|++++|+.+|++||+++|++..+|+++|.+|.++|++++|++.|+++++++|++..+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.+|..+|++++|++
T Consensus        84 g~~l~~~g~~~~A~~   98 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQ   98 (723)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=4.6e-12  Score=116.90  Aligned_cols=97  Identities=19%  Similarity=0.108  Sum_probs=88.2

Q ss_pred             cccccccccChhhHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 008755          451 SKLSTNTFNQKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF  514 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~  514 (554)
                      ..+...+..+|+++..++.                +|.++++.|++++|+..|+++++++|++..+++++|.+|+.+|++
T Consensus        25 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  104 (208)
T 3urz_A           25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE  104 (208)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence            3344445567888888888                999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       515 ~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      ++|+..|+++++++|++..+++++|.+|+.+++
T Consensus       105 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A          105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999876654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.33  E-value=5.9e-12  Score=125.43  Aligned_cols=89  Identities=21%  Similarity=0.146  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++..++++++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            57788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHh
Q 008755          544 MLGYYKEAI  552 (554)
Q Consensus       544 ~~~~~~~A~  552 (554)
                      .++++++|.
T Consensus       276 ~~~~~~~a~  284 (336)
T 1p5q_A          276 RIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.33  E-value=2.6e-12  Score=129.95  Aligned_cols=103  Identities=11%  Similarity=0.016  Sum_probs=93.2

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ..+...+..+|++..+|+.+|.++...|+ +++|+..|+++|+++|++..+|+++|.++..+|+|++|+.+|+++|+++|
T Consensus       118 ~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            34445556678999999999999999997 99999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+|+++|.++..+|++++|++
T Consensus       198 ~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          198 KNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             cCHHHHHHHHHHHHHcCChHHHHH
Confidence            999999999999999999998875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.33  E-value=9.7e-12  Score=115.55  Aligned_cols=100  Identities=22%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      +......+|+++..++.+|..+...|++++|+..|+++++++ +++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            334445567899999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++++|.++..+|++++|++
T Consensus       186 ~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          186 DLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999999975

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.33  E-value=3.6e-12  Score=103.85  Aligned_cols=93  Identities=19%  Similarity=0.260  Sum_probs=89.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR  538 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~  538 (554)
                      |+++..++.+|..++..|++++|+..|+++++++|++..++.++|.+++.+++|++|+..++++++++|+  +..+++++
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHc-CCHHHHhc
Q 008755          539 GTAREML-GYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~-~~~~~A~~  553 (554)
                      |.++..+ |++++|++
T Consensus        83 ~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           83 ADALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHHHTTCSSCSHHHHH
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            9999999 99999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-11  Score=104.03  Aligned_cols=95  Identities=36%  Similarity=0.552  Sum_probs=65.9

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..++++++|+..++++++++|++..+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34556666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|++
T Consensus        91 a~~~~~~~~~~~A~~  105 (133)
T 2lni_A           91 AAALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhHHHHHH
Confidence            777777777766653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=2.7e-11  Score=94.94  Aligned_cols=86  Identities=34%  Similarity=0.466  Sum_probs=82.1

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +.++..++.+|..++..|++++|+..|+++++.+|++..+++++|.++.+++++++|+..++++++++|++..+++++|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 008755          541 AREMLG  546 (554)
Q Consensus       541 ~~~~~~  546 (554)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.31  E-value=7.9e-12  Score=129.98  Aligned_cols=92  Identities=28%  Similarity=0.438  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ++.+..++++|+.+++.|+|++|+..|+++++++|++               ..+|+++|.||+++++|++|+.+|++++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555554               3455555555555555555555555555


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          526 NLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       526 ~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      +++|++.++|+++|.+|..+|++++|+
T Consensus       345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~  371 (457)
T 1kt0_A          345 GLDSANEKGLYRRGEAQLLMNEFESAK  371 (457)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHccCHHHHH
Confidence            555555555555555555555555554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=3e-11  Score=99.23  Aligned_cols=91  Identities=37%  Similarity=0.508  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      .+..++.+|..++..|++++|+..|+++++.+|++..++.++|.++..++++++|+..++++++++|++..+++++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46778888999999999999999999999999988888999999999999999999999999999998888999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus        83 ~~~~~~~~A~~   93 (118)
T 1elw_A           83 EFLNRFEEAKR   93 (118)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHHhhHHHHHH
Confidence            99999888864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.30  E-value=1.6e-11  Score=112.10  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..++++|.++++.|+|++|+.+|+++++++|++..+++++|.+|+.+++|++|+..|+++++++|++..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             cCCHHHH
Q 008755          545 LGYYKEA  551 (554)
Q Consensus       545 ~~~~~~A  551 (554)
                      +++++++
T Consensus       169 ~~~~~~~  175 (198)
T 2fbn_A          169 LKEARKK  175 (198)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            5555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.30  E-value=8.4e-12  Score=108.70  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=87.4

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD-CTKAINLDKK  530 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~al~l~p~  530 (554)
                      .+...+..+|+++.+|+.+|.++.+.|++++|+..|+++++++|+++.+|+++|.+|.+++++++|... ++++++++|+
T Consensus        53 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~  132 (150)
T 4ga2_A           53 YICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG  132 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence            344445567899999999999999999999999999999999999999999999999999999887765 5999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 008755          531 NVKAYLRRGTAREMLGY  547 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~  547 (554)
                      ++.++..++.++..+|+
T Consensus       133 ~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          133 SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            99999999999988875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.30  E-value=3.8e-11  Score=100.51  Aligned_cols=88  Identities=18%  Similarity=0.070  Sum_probs=46.4

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .|.+...+..+|..++..|++++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++..+++.++
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCC
Q 008755          540 TAREMLGY  547 (554)
Q Consensus       540 ~~~~~~~~  547 (554)
                      .++..+|+
T Consensus       122 ~~~~~~~~  129 (131)
T 2vyi_A          122 IAELKLRE  129 (131)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            55555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.28  E-value=1.6e-11  Score=118.92  Aligned_cols=92  Identities=38%  Similarity=0.512  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .++..++.+|+.++..|+|++|+..|+++++.+|++..+|+++|.+|+++|+|++|+.+|+++++++|++..+++++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      |..+|++++|++
T Consensus        82 ~~~~g~~~~A~~   93 (281)
T 2c2l_A           82 QLEMESYDEAIA   93 (281)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999999975

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.4e-11  Score=104.55  Aligned_cols=93  Identities=34%  Similarity=0.455  Sum_probs=62.9

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+.++..++.+|..++..|+|++|+..|+++++.+|++   ..+++++|.+|+.+++|++|+..++++++++|++..+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            34556666666666666666666666666666666665   666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHh
Q 008755          537 RRGTAREMLGYYKEAI  552 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~  552 (554)
                      ++|.++..+|++++|+
T Consensus       104 ~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A          104 RRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            6666666666666665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.28  E-value=4.1e-11  Score=107.75  Aligned_cols=97  Identities=26%  Similarity=0.216  Sum_probs=90.2

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....++....+..+|..+...+++++|+..++++++++|++..++..+|.+|.++|+|++|++.|+++++++|++..+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  145 (184)
T 3vtx_A           66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ  145 (184)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ++|.+|..+|++++|++
T Consensus       146 ~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A          146 SIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHH
Confidence            99999999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.26  E-value=2.1e-11  Score=112.49  Aligned_cols=91  Identities=21%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      .++.++.+|..++..|+|++|+..|+++++++|+++.+|+.                +|.+|.++|+|++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          527 LDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       527 l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++|++..+++++|.++..+|++++|++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~  109 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALR  109 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999975

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.26  E-value=3.2e-11  Score=101.36  Aligned_cols=88  Identities=18%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHH
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRG  539 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~g  539 (554)
                      .++.+|..++..|+|++|+..|+++++.+|++.   .+++.+|.+|+++|+|++|+..|+++++++|++   ..+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            356677777777777777777777777777766   677777777777777777777777777777777   67777777


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus        84 ~~~~~~g~~~~A~~   97 (129)
T 2xev_A           84 LSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            77777777777753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.25  E-value=2.5e-11  Score=122.67  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~  534 (554)
                      .+..+|+...+|..+|.++.+.|++++|+..|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            4556789999999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+++|.++..+|++++|++
T Consensus       169 ~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHH
T ss_pred             HHHHHHHHHHccCHHHHHH
Confidence            9999999999999999875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.24  E-value=4.5e-11  Score=102.99  Aligned_cols=82  Identities=16%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             cChhhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFLQA  517 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A  517 (554)
                      .+|++++.|+++|.++...+++          ++|+..|++||+++|++..+|+++|.+|.+++           +|++|
T Consensus        31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA  110 (158)
T 1zu2_A           31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  110 (158)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence            4568999999999999998875          59999999999999999999999999999885           89999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHH
Q 008755          518 EADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       518 ~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +++|++|++++|++......+..
T Consensus       111 ~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A          111 TQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999876665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.24  E-value=1e-10  Score=102.72  Aligned_cols=102  Identities=18%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+.......|.+...++.+|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++
T Consensus        35 ~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           35 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            33444455666777788888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHHHHHH--HHHcCCHHHHhc
Q 008755          532 VKAYLRRGTA--REMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~--~~~~~~~~~A~~  553 (554)
                      ..++..++.+  +...|++++|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A          115 KDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777444443  667777777764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.24  E-value=5.3e-11  Score=99.73  Aligned_cols=92  Identities=39%  Similarity=0.585  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA  534 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~  534 (554)
                      +.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+++|++|+..++++++++|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999887       999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++++|.++..+|++++|++
T Consensus        82 ~~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHH
Confidence            9999999999999999975

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.24  E-value=7.7e-11  Score=105.90  Aligned_cols=106  Identities=18%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             hhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      .+...+...+..+|+++.+++.+|.++++.|++++|+..+++++..+|++..++..+|.++...+++++|+..+++++++
T Consensus        23 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  102 (184)
T 3vtx_A           23 GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL  102 (184)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33445566677788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|++..+++.+|.++..+|++++|++
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~  128 (184)
T 3vtx_A          103 NTVYADAYYKLGLVYDSMGEHDKAIE  128 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhCCchhHHH
Confidence            99999999999999999999999975

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.23  E-value=6e-11  Score=110.72  Aligned_cols=92  Identities=21%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      .++..++.+|..++..|+|++|+..|+++++++| .+..+++++|.+++.+|+|++|+..|+++++++|++..+++.+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            4557899999999999999999999999999998 888888899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|++
T Consensus        85 ~~~~~~~~~~A~~   97 (228)
T 4i17_A           85 AYRDMKNNQEYIA   97 (228)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHcccHHHHHH
Confidence            9999999998874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.22  E-value=3e-11  Score=107.99  Aligned_cols=94  Identities=26%  Similarity=0.351  Sum_probs=90.1

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .|.++..++.+|..++..|++++|+..|+++++++|+++.++.++|.+ ++..+++  ++|+..++++++++|++..+++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  119 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM  119 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence            457788999999999999999999999999999999999999999999 8899999  9999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ++|.++..+|++++|++
T Consensus       120 ~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A          120 LLASDAFMQANYAQAIE  136 (177)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcccHHHHHH
Confidence            99999999999999974

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.21  E-value=7.9e-11  Score=109.88  Aligned_cols=92  Identities=28%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KA  534 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~~  534 (554)
                      .+...++.+|.+++..|++++|+..|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++.       .+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999999       67


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++++|.++..+|++++|++
T Consensus       120 ~~~~g~~~~~~~~~~~A~~  138 (228)
T 4i17_A          120 YLKEGQKFQQAGNIEKAEE  138 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhHHHHHhccHHHHHH
Confidence            9999999999999999975

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.21  E-value=7.1e-11  Score=102.73  Aligned_cols=102  Identities=12%  Similarity=0.015  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (554)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  507 (554)
                      ..++..+..+...-   ....+...+......+|.++..|+.+|.+++..|+|++|+.+|+++++++|+++.+|+++|.+
T Consensus        37 ~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           37 DDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            34555555443322   222223334445566789999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      |.++|++++|+..|+++++++|+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.21  E-value=5.8e-11  Score=104.80  Aligned_cols=95  Identities=12%  Similarity=0.044  Sum_probs=85.0

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+...+...|+++..++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus        32 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           32 DLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            33444455567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 008755          531 NVKAYLRRGTAREML  545 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~  545 (554)
                      +..++++++.+....
T Consensus       112 ~~~~~~~~~l~~~~~  126 (164)
T 3sz7_A          112 GGSDAMKRGLETTKR  126 (164)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            999888877765443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.2e-10  Score=97.66  Aligned_cols=93  Identities=15%  Similarity=0.030  Sum_probs=84.8

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD----  528 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----  528 (554)
                      +...+...|+++..++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++    
T Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  106 (126)
T 3upv_A           27 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN  106 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence            3344455678899999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             --CCCHHHHHHHHHHHHHc
Q 008755          529 --KKNVKAYLRRGTAREML  545 (554)
Q Consensus       529 --p~~~~~~~~~g~~~~~~  545 (554)
                        |++..++..+..+...+
T Consensus       107 ~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A          107 NGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TTTTHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHhh
Confidence              99999999888887653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.20  E-value=9.6e-11  Score=116.60  Aligned_cols=97  Identities=25%  Similarity=0.329  Sum_probs=92.2

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADC  521 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~  521 (554)
                      ....|+.+..++.+|+.+++.|+|++|+..|+++++++|++               ..+|+++|.+|+++++|++|+.+|
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33457889999999999999999999999999999999998               699999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       522 ~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++++|++..+++++|.+|..+|++++|++
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  251 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARA  251 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999975

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.19  E-value=2.2e-11  Score=121.41  Aligned_cols=97  Identities=27%  Similarity=0.367  Sum_probs=81.6

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEA  519 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~  519 (554)
                      ....++.+..++.+|+.+++.|+|++|+..|+++++++|++.                 .+|+++|.||+++++|++|+.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344456777888888888888888888888888888888776                 388888888888888888888


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       520 ~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|+++++++|++..+++++|.+|..+|++++|++
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~  285 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD  285 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888888888888888888888864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.18  E-value=3.4e-10  Score=93.71  Aligned_cols=85  Identities=32%  Similarity=0.452  Sum_probs=45.8

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .|.+...++.+|..++..|++++|+..|+++++.+|.+..++.++|.+|..++++++|+..++++++++|++..+++.++
T Consensus        39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHH
Q 008755          540 TAREM  544 (554)
Q Consensus       540 ~~~~~  544 (554)
                      .++..
T Consensus       119 ~~~~~  123 (125)
T 1na0_A          119 NAKQK  123 (125)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.17  E-value=5.5e-11  Score=119.87  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+.+...++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      +.++..+++++++.+
T Consensus       348 ~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=3.2e-10  Score=104.29  Aligned_cols=91  Identities=19%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----------  532 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----------  532 (554)
                      ++..++.+|..++..|++++|+..|+++++++|++..+++++|.+|+.+|+|++|+..|++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            5679999999999999999999999999999999999999999999999999999999999999888876          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 ------KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ------~~~~~~g~~~~~~~~~~~A~~  553 (554)
                            .+++++|.++..+|++++|++
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHH
Confidence                  999999999999999999975

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=8.4e-11  Score=101.14  Aligned_cols=98  Identities=15%  Similarity=0.047  Sum_probs=85.9

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+......+|.++..|+.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus        40 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           40 IFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            34444556788999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCHH
Q 008755          532 VKAYLRRGTAREMLGYYK  549 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~  549 (554)
                      +.....+..+...++..+
T Consensus       120 ~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A          120 PAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             GGGHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHH
Confidence            877776666665555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.16  E-value=7.8e-11  Score=102.25  Aligned_cols=91  Identities=13%  Similarity=0.036  Sum_probs=79.6

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+......+|.++..|+.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus        43 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           43 VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            33444556788999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 008755          532 VKAYLRRGTAR  542 (554)
Q Consensus       532 ~~~~~~~g~~~  542 (554)
                      +.....+..+.
T Consensus       123 ~~~~~~~~~~~  133 (148)
T 2vgx_A          123 PEFXELSTRVS  133 (148)
T ss_dssp             GGGHHHHHHHH
T ss_pred             CcchHHHHHHH
Confidence            76644444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.16  E-value=1.6e-10  Score=97.19  Aligned_cols=91  Identities=18%  Similarity=0.075  Sum_probs=85.8

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...++.+|..++..|++++|+..|+++++.+|++..+++++|.+++.++++++|+..++++++++|++..+++
T Consensus        43 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  122 (133)
T 2lni_A           43 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD  122 (133)
T ss_dssp             HTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred             HHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 008755          537 RRGTAREMLGY  547 (554)
Q Consensus       537 ~~g~~~~~~~~  547 (554)
                      .++.++..+++
T Consensus       123 ~l~~~~~~~~~  133 (133)
T 2lni_A          123 GYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999988764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.16  E-value=9.8e-11  Score=103.10  Aligned_cols=91  Identities=13%  Similarity=0.012  Sum_probs=82.9

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR  538 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~  538 (554)
                      .|.....++++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++. .....+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999999999998 667777


Q ss_pred             HHHHHHcCCHHH
Q 008755          539 GTAREMLGYYKE  550 (554)
Q Consensus       539 g~~~~~~~~~~~  550 (554)
                      ..+...++++++
T Consensus       139 ~~~~~~~~~~~~  150 (162)
T 3rkv_A          139 KIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            877776655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=4.4e-11  Score=130.69  Aligned_cols=101  Identities=13%  Similarity=-0.012  Sum_probs=91.7

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .+......+|+++.+|+.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|.++|+|++ ++.|+++++++|++
T Consensus       455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence            34444555678899999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+++++|.+|..+|++++|++
T Consensus       534 ~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          534 ISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999975

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.16  E-value=2.9e-10  Score=95.02  Aligned_cols=96  Identities=40%  Similarity=0.537  Sum_probs=91.7

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...+.++..++.+|..++..|++++|+..|+++++.+|++..++.++|.++..++++++|+..++++++++|++..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..+|++++|++
T Consensus        86 ~~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVA  101 (131)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            9999999999999974

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.16  E-value=2.7e-10  Score=99.93  Aligned_cols=93  Identities=42%  Similarity=0.659  Sum_probs=89.8

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      .+.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.++..+++|++|+..++++++++|++..+++++|.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|++
T Consensus        90 ~~~~~~~~~~A~~  102 (166)
T 1a17_A           90 SNMALGKFRAALR  102 (166)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHhccHHHHHH
Confidence            9999999999974

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.15  E-value=2.4e-11  Score=100.72  Aligned_cols=91  Identities=15%  Similarity=0.011  Sum_probs=83.2

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .|++...++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..++++++++|++........
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999877666


Q ss_pred             HHHHHcCCHHH
Q 008755          540 TAREMLGYYKE  550 (554)
Q Consensus       540 ~~~~~~~~~~~  550 (554)
                      .+....+.+++
T Consensus       103 ai~~~~~~l~~  113 (117)
T 3k9i_A          103 AILFYADKLDE  113 (117)
T ss_dssp             HHHHHTTCTTC
T ss_pred             HHHHHHHHHHH
Confidence            66666655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.15  E-value=2.3e-10  Score=94.71  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             HccCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       476 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ..|++++|+..|++++++   +|++..+++++|.+|+.+|+|++|+..++++++++|++..+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 008755          553 E  553 (554)
Q Consensus       553 ~  553 (554)
                      +
T Consensus        82 ~   82 (117)
T 3k9i_A           82 E   82 (117)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.14  E-value=5.3e-11  Score=102.58  Aligned_cols=79  Identities=18%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       475 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      -+.++|++|+..|+++++++|+++++|+++|.++.+++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHhc
Q 008755          545 LG-----------YYKEAIE  553 (554)
Q Consensus       545 ~~-----------~~~~A~~  553 (554)
                      +|           ++++|++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~  112 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQ  112 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHH
Confidence            85           7888874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=2.2e-10  Score=92.08  Aligned_cols=88  Identities=10%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLR  537 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~  537 (554)
                      +|+++..++.+|..++..|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|++++++.|+  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999774  5566666


Q ss_pred             HHHHHHHcCC
Q 008755          538 RGTAREMLGY  547 (554)
Q Consensus       538 ~g~~~~~~~~  547 (554)
                      +...+...+.
T Consensus        83 l~~~l~~~~~   92 (100)
T 3ma5_A           83 LQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHccc
Confidence            6666665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.4e-09  Score=102.61  Aligned_cols=95  Identities=40%  Similarity=0.547  Sum_probs=92.0

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|.+...+..+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|++
T Consensus       214 ~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          214 ATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhHHHHHH
Confidence            999999999999975

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.13  E-value=1.2e-09  Score=97.16  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .|.+...++.+|..++..|++++|+..|+++++.+|++..++.++|.++...+++++|+..++++++++|++..+++.+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            33445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHh
Q 008755          540 TAREMLGYYKEAI  552 (554)
Q Consensus       540 ~~~~~~~~~~~A~  552 (554)
                      .++..+|++++|+
T Consensus       118 ~~~~~~~~~~~A~  130 (186)
T 3as5_A          118 VALDNLGRFDEAI  130 (186)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHH
Confidence            5555555555553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.12  E-value=8.6e-10  Score=105.39  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=90.1

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+.++..++.+|..++..|++++|+..|+++++++|++..+|.++|.+|..+|++++|+..|+++++++|++..+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       119 ~~~~~~g~~~~A~~  132 (275)
T 1xnf_A          119 IALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHhccHHHHHH
Confidence            99999999999974

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=4.4e-10  Score=113.20  Aligned_cols=89  Identities=29%  Similarity=0.423  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      ..++.+|+.+++.|+|++|+..|+++++                ++|.+..+|+++|.+|+++++|++|+.+|+++++++
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            4688899999999999999999999999                788889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |++.++++++|.+|..+|++++|++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~  328 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALA  328 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999999999999975

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=8.7e-10  Score=92.37  Aligned_cols=94  Identities=33%  Similarity=0.472  Sum_probs=89.5

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+.+...++.+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++++|++..+++.++
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++...|++++|++
T Consensus       111 ~~~~~~~~~~~A~~  124 (136)
T 2fo7_A          111 NAYYKQGDYDEAIE  124 (136)
T ss_dssp             HHHHTTTCHHHHHH
T ss_pred             HHHHHHccHHHHHH
Confidence            99999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.09  E-value=2.2e-10  Score=119.04  Aligned_cols=89  Identities=19%  Similarity=0.153  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...|+++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++++++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHh
Q 008755          544 MLGYYKEAI  552 (554)
Q Consensus       544 ~~~~~~~A~  552 (554)
                      .+++++++.
T Consensus       397 ~~~~~~~a~  405 (457)
T 1kt0_A          397 KAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.09  E-value=4e-10  Score=120.57  Aligned_cols=123  Identities=12%  Similarity=-0.018  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (554)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  507 (554)
                      ..+..++..+...   .....+...+.......|++...++.+|..+...|++++|+..|+++++++|++..+++++|.+
T Consensus        24 ~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  100 (568)
T 2vsy_A           24 VAWLMLADAELGM---GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA  100 (568)
T ss_dssp             HHHHHHHHHHHHH---TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4444444444332   2223333445555667788899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHhc
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML---GYYKEAIE  553 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~---~~~~~A~~  553 (554)
                      |.++|++++|++.|+++++++|++..++++++.++..+   |++++|++
T Consensus       101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A          101 LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999999999999999   99998874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.09  E-value=4.5e-10  Score=102.38  Aligned_cols=101  Identities=30%  Similarity=0.370  Sum_probs=93.2

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQ  516 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~  516 (554)
                      +.......++.+..++.+|+.++..|+|++|+..|++++++.|+++                .+++++|.+|+++++|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  106 (198)
T 2fbn_A           27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK  106 (198)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3344445567888999999999999999999999999999999887                899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+.+|+++++++|++..+++++|.+|..+|++++|++
T Consensus       107 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~  143 (198)
T 2fbn_A          107 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE  143 (198)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999999999999999999975

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.09  E-value=3.7e-10  Score=97.53  Aligned_cols=79  Identities=13%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYY----SNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      |.++..|.++|.++.+.|+|++|+.+|+++|++       +|++..+|    +++|.++..+|+|++|+.+|+++++++|
T Consensus        54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            346679999999999999999999999999999       99999999    9999999999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 008755          530 KNVKAYLRRG  539 (554)
Q Consensus       530 ~~~~~~~~~g  539 (554)
                      ++...+-.+.
T Consensus       134 ~d~~~~~~~~  143 (159)
T 2hr2_A          134 ERKGETPGKE  143 (159)
T ss_dssp             HCCSCCTTHH
T ss_pred             CcHHHHHHHH
Confidence            8755443333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.08  E-value=1.8e-10  Score=96.16  Aligned_cols=81  Identities=11%  Similarity=-0.036  Sum_probs=69.4

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      +...+..+|+++..|+.+|.++...|++++|+..|+++++++|++..+++++|.+|..+|++++|+..++++++++|++.
T Consensus        40 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            34445567889999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             H
Q 008755          533 K  533 (554)
Q Consensus       533 ~  533 (554)
                      .
T Consensus       120 ~  120 (121)
T 1hxi_A          120 Q  120 (121)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.06  E-value=1.2e-10  Score=121.73  Aligned_cols=104  Identities=17%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             hcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ...+.......|+++..++++|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|+|++|++.|+++++++|
T Consensus        26 ~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           26 IKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34445556667888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH--HHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTA--REMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~--~~~~~~~~~A~~  553 (554)
                      ++..++++++.+  +..+|++++|++
T Consensus       106 ~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1          106 HDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998888888888  788888888865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.06  E-value=1.5e-09  Score=96.66  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=90.5

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .|.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|++..+++.+|
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       152 ~~~~~~~~~~~A~~  165 (186)
T 3as5_A          152 FSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999999974

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=1.7e-09  Score=89.34  Aligned_cols=91  Identities=37%  Similarity=0.508  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....++.+|..++..|++++|+..|+++++.+|++..++..+|.++...+++++|+..++++++++|++...++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ...|++++|++
T Consensus        88 ~~~~~~~~A~~   98 (125)
T 1na0_A           88 YKQGDYDEAIE   98 (125)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHhcCHHHHHH
Confidence            99999999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.05  E-value=1.2e-09  Score=102.38  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|++..+++
T Consensus        84 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  163 (243)
T 2q7f_A           84 LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF  163 (243)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence            34455566667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++...|++++|++
T Consensus       164 ~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            77777777777776653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.05  E-value=1.7e-09  Score=108.29  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ++..++.+|..+...|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++..+++++|.+|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus       292 ~~~g~~~~A~~  302 (365)
T 4eqf_A          292 INLGAYREAVS  302 (365)
T ss_dssp             HHHTCCHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999999975

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.04  E-value=1.9e-09  Score=99.43  Aligned_cols=102  Identities=14%  Similarity=0.007  Sum_probs=85.3

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cC
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LD  528 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~  528 (554)
                      .+.......|++...+..+|..+...|++++|+..|+++++.+|++..++.++|.++... |++++|+..++++++  .+
T Consensus        30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~  109 (225)
T 2vq2_A           30 SIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY  109 (225)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence            344445556777888888899998899999999999999998888888888899999888 899999999999888  66


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |.+..+++.+|.++..+|++++|++
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A          110 PTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHH
Confidence            6678888889999999999888864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.04  E-value=2.3e-10  Score=124.98  Aligned_cols=95  Identities=17%  Similarity=0.085  Sum_probs=90.3

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|++...++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+++|+|++|++.|+++++++|++..++++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..+|++++ ++
T Consensus       507 lg~~~~~~g~~~~-~~  521 (681)
T 2pzi_A          507 LAATAELAGNTDE-HK  521 (681)
T ss_dssp             HHHHHHHHTCCCT-TC
T ss_pred             HHHHHHHcCChHH-HH
Confidence            9999999999877 53

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.04  E-value=1.5e-09  Score=116.04  Aligned_cols=100  Identities=10%  Similarity=-0.057  Sum_probs=90.2

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      ......+|++...++.+|..+++.|++++|+..|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..
T Consensus        13 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   92 (568)
T 2vsy_A           13 RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG   92 (568)
T ss_dssp             --------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            33445567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++|.+|..+|++++|++
T Consensus        93 ~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           93 IALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.03  E-value=1.6e-09  Score=103.32  Aligned_cols=125  Identities=14%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HH
Q 008755          426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---AT  499 (554)
Q Consensus       426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~  499 (554)
                      ....++..+..+...-....   +...+...+...|.+   ..+++.+|.++++.|+|++|+..|+++++.+|++   ..
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDR---AIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHH---HHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            44556666665543322222   222233333334444   8999999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755          500 YYSNRAAAYLE--------SGSFLQAEADCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       500 ~~~~~a~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~  553 (554)
                      +++.+|.+++.        +|++++|+..|+++++++|++..+.                 +.+|.+|..+|++++|+.
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            89999999999        9999999999999999999986665                 889999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.03  E-value=8.9e-10  Score=105.10  Aligned_cols=95  Identities=19%  Similarity=0.236  Sum_probs=88.3

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---V  532 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~  532 (554)
                      ..+.++..++.+|..+++.|+|++|+..|+++++.+|++   ..+++.+|.+|+++|+|++|+..|+++++++|++   .
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            346778999999999999999999999999999999999   8999999999999999999999999999998854   6


Q ss_pred             HHHHHHHHHHHH--------cCCHHHHhc
Q 008755          533 KAYLRRGTAREM--------LGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~--------~~~~~~A~~  553 (554)
                      .+++.+|.++..        +|++++|++
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~  118 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIE  118 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            789999999999        999999975

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.03  E-value=1.2e-09  Score=109.45  Aligned_cols=93  Identities=18%  Similarity=0.120  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      +.+...++.+|..+++.|++++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus        62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35566799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      +|..+|++++|++
T Consensus       142 ~~~~~g~~~~A~~  154 (365)
T 4eqf_A          142 SYTNTSHQQDACE  154 (365)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHccccHHHHHH
Confidence            9999999999975

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.02  E-value=5.4e-10  Score=116.72  Aligned_cols=95  Identities=22%  Similarity=0.119  Sum_probs=91.2

Q ss_pred             cChhhHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          459 NQKQSAEIAKEKGNQAYKD--------KQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ..|++...|+.+|..++..        |++++|+..|+++++++|   +++.+|+++|.+|..+|+|++|+..|++++++
T Consensus       208 ~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567889999999999999        999999999999999999   99999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|++..++++++.++..+|++++|++
T Consensus       288 ~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          288 DPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999974

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.01  E-value=3.2e-09  Score=86.78  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=80.1

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...|.+...++.+|..++..|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|++..++..
T Consensus        32 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  111 (118)
T 1elw_A           32 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG  111 (118)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 008755          538 RGTAR  542 (554)
Q Consensus       538 ~g~~~  542 (554)
                      ++.+.
T Consensus       112 l~~~~  116 (118)
T 1elw_A          112 LQNME  116 (118)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=2.5e-09  Score=85.26  Aligned_cols=80  Identities=13%  Similarity=0.065  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHH
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY--LRRGTARE  543 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~--~~~g~~~~  543 (554)
                      .+.+|..++..|+|++|+..|+++++.+|++.. +++++|.+|+.+|++++|+..|+++++++|++..++  ..++.++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999 999999999999999999999999999999999988  44555554


Q ss_pred             HcC
Q 008755          544 MLG  546 (554)
Q Consensus       544 ~~~  546 (554)
                      ...
T Consensus        83 ~~~   85 (99)
T 2kc7_A           83 FYN   85 (99)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.01  E-value=2e-09  Score=107.69  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ++..+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus       296 ~~~g~~~~A~~  306 (368)
T 1fch_A          296 INLGAHREAVE  306 (368)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999999974

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.00  E-value=3.6e-09  Score=88.50  Aligned_cols=89  Identities=33%  Similarity=0.474  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..++.+|..++..|++++|+..|+++++.+|++..+++.++.++...+++++|+..++++++++|++...++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHhc
Q 008755          545 LGYYKEAIE  553 (554)
Q Consensus       545 ~~~~~~A~~  553 (554)
                      .|++++|++
T Consensus        82 ~~~~~~A~~   90 (136)
T 2fo7_A           82 QGDYDEAIE   90 (136)
T ss_dssp             TTCHHHHHH
T ss_pred             hcCHHHHHH
Confidence            999999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=9.5e-10  Score=114.76  Aligned_cols=93  Identities=42%  Similarity=0.659  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      ++.+..++.+|+.+++.|+|++|+..|+++++++|++..+|+++|.+|+++++|++|+++|+++++++|++..+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      +|..+|++++|++
T Consensus        83 ~~~~~g~~~eA~~   95 (477)
T 1wao_1           83 SNMALGKFRAALR   95 (477)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9999999999975

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=8.9e-10  Score=93.44  Aligned_cols=95  Identities=18%  Similarity=0.028  Sum_probs=84.3

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----  530 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----  530 (554)
                      .....|.+...++.+|.+++..|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+     
T Consensus        35 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  114 (137)
T 3q49_B           35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  114 (137)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHH
Confidence            344467788999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             CHHHHHHHHHHHHHcCCHHH
Q 008755          531 NVKAYLRRGTAREMLGYYKE  550 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~  550 (554)
                      +......+..+.......++
T Consensus       115 ~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B          115 GDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67777777777766655444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.00  E-value=1.1e-09  Score=90.15  Aligned_cols=91  Identities=8%  Similarity=0.032  Sum_probs=80.0

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYL  536 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~  536 (554)
                      ..|+++..++.+|..++..|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+  +.....
T Consensus        14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (115)
T 2kat_A           14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK   93 (115)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999999999884  556666


Q ss_pred             HHHHHHHHcCCHH
Q 008755          537 RRGTAREMLGYYK  549 (554)
Q Consensus       537 ~~g~~~~~~~~~~  549 (554)
                      .+...+..+++..
T Consensus        94 ~l~~~l~~l~~~~  106 (115)
T 2kat_A           94 ELQVFLRRLARED  106 (115)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc
Confidence            6666666665443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.00  E-value=9e-10  Score=115.02  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             cChhhHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADC  521 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~  521 (554)
                      ..|+ ...+..+|..+...         |++++|+..|+++++++|++..+|+++|.+|..+        ++|++|+..|
T Consensus       166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            3455 58999999999999         9999999999999999999999999999999999        9999999999


Q ss_pred             HHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          522 TKAINLDK---KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       522 ~~al~l~p---~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++++++|   +++.+++++|.+|..+|++++|++
T Consensus       245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~  279 (474)
T 4abn_A          245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE  279 (474)
T ss_dssp             HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999   999999999999999999999975

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.98  E-value=3.2e-09  Score=109.42  Aligned_cols=99  Identities=27%  Similarity=0.266  Sum_probs=88.4

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      .....+|.++..++.+|..+++.|++++|+..|+++++.+|++..+++.+|.+|+.+|++++|+..++++++++|++..+
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            33455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.+|.+|..+|++++|++
T Consensus        97 ~~~l~~~~~~~g~~~~A~~  115 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAED  115 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.98  E-value=3.2e-09  Score=99.30  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      +.......|.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.+++..|++++|+..++++++++|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          114 FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            33344455677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++.+|.++..+|++++|++
T Consensus       194 ~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          194 DAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999998864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.97  E-value=3.6e-09  Score=99.83  Aligned_cols=105  Identities=16%  Similarity=0.056  Sum_probs=95.8

Q ss_pred             hhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 008755          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--  526 (554)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--  526 (554)
                      +...+.......|.+...++.+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++  
T Consensus        56 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  135 (252)
T 2ho1_A           56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT  135 (252)
T ss_dssp             GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence            334444555667888999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          527 LDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       527 l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.+..+++.+|.++..+|++++|++
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            889999999999999999999999975

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.97  E-value=3.3e-09  Score=97.44  Aligned_cols=89  Identities=25%  Similarity=0.272  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .+...++.+|..++..|+|++|+..|++++  +| ++.+++++|.+|..+|+|++|+..|+++++++|++..+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456778999999999999999999999996  44 789999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      +..+|++++|++
T Consensus        81 ~~~~~~~~~A~~   92 (213)
T 1hh8_A           81 YYQTEKYDLAIK   92 (213)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcccHHHHHH
Confidence            999999999975

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.96  E-value=2.1e-09  Score=108.73  Aligned_cols=96  Identities=24%  Similarity=0.199  Sum_probs=71.7

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|.++..++.+|..+.+.|++++|+..|+++++++|++..+|.++|.++.+.|++++|+..|+++++++|++..++..
T Consensus        61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  140 (388)
T 1w3b_A           61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD  140 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..+|++++|++
T Consensus       141 l~~~~~~~g~~~~A~~  156 (388)
T 1w3b_A          141 LGNLLKALGRLEEAKA  156 (388)
T ss_dssp             HHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHccCHHHHHH
Confidence            7777777777777653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.96  E-value=4.4e-09  Score=104.29  Aligned_cols=91  Identities=29%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      +++.++.+|..++..|+|++|+..|+++++.+|++..+++++|.+++.+|++++|+..++++++++|++..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus        82 ~~~~~~~~A~~   92 (359)
T 3ieg_A           82 LKQGKLDEAED   92 (359)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HHcCChHHHHH
Confidence            99999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.96  E-value=1e-08  Score=85.74  Aligned_cols=85  Identities=8%  Similarity=-0.003  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ....++.+|.+++..|+|++|+..|+++++.+|++   +.+++++|.+|+.+|++++|+..++++++.+|++..+...+.
T Consensus        38 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           38 TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            34799999999999999999999999999999999   899999999999999999999999999999999998877776


Q ss_pred             HHHHHcCC
Q 008755          540 TAREMLGY  547 (554)
Q Consensus       540 ~~~~~~~~  547 (554)
                      .+....++
T Consensus       118 ~l~~l~~~  125 (129)
T 2xev_A          118 RLQSIRLG  125 (129)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHhh
Confidence            66555444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.96  E-value=1.6e-09  Score=114.47  Aligned_cols=94  Identities=33%  Similarity=0.537  Sum_probs=89.5

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      ..+.+..++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|+++|+|++|+..|+++++++|++..+++.+|
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  100 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       101 ~~~~~~g~~~~A~~  114 (537)
T 3fp2_A          101 SANESLGNFTDAMF  114 (537)
T ss_dssp             HHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999999974

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=6.8e-09  Score=88.89  Aligned_cols=80  Identities=20%  Similarity=0.170  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...++.+|..++..|+|++|+..|+++++++|++..+++++|.+|+.++++++|+..++++++++|++..++..++.+..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999988887654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.95  E-value=1.4e-08  Score=95.71  Aligned_cols=95  Identities=12%  Similarity=0.101  Sum_probs=91.2

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+.+...+..+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..++++++++|++..+++.+
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      +.++..+|++++|++
T Consensus       216 ~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          216 IRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHccCHHHHHH
Confidence            999999999999864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.95  E-value=2.9e-09  Score=87.55  Aligned_cols=73  Identities=15%  Similarity=0.075  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       481 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++|+..|+++++.+|++..+++++|.+|+.+|+|++|+..|+++++++|++..+++++|.+|..+|++++|++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999974

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.94  E-value=6.1e-09  Score=95.90  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=90.2

Q ss_pred             cccccccChhhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      +.......|.+...+..+|..++.. |++++|+..|+++++  .+|.+..++.++|.++...|++++|+..++++++++|
T Consensus        65 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A           65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3444455677888999999999999 999999999999999  6677789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+++.+|.++..+|++++|++
T Consensus       145 ~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          145 QFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=3.1e-09  Score=107.52  Aligned_cols=96  Identities=21%  Similarity=0.233  Sum_probs=91.9

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ...|++...+..+|..+++.|++++|+..++++++.+|.+..+|+.+|.+|.+.|++++|+..|+++++++|++..++++
T Consensus        27 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  106 (388)
T 1w3b_A           27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN  106 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++...|++++|++
T Consensus       107 l~~~~~~~g~~~~A~~  122 (388)
T 1w3b_A          107 LAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             HHHHHHHHSCSSHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.93  E-value=5.6e-09  Score=102.25  Aligned_cols=93  Identities=13%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      |.+...+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..++++++++|++..+++.+|.
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|++
T Consensus       249 ~~~~~g~~~~A~~  261 (327)
T 3cv0_A          249 SYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHhccHHHHHH
Confidence            9999999999974

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.93  E-value=1.3e-09  Score=104.19  Aligned_cols=90  Identities=16%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ++...++.+|..++..|++++|+..|+++++ .|.+    ..+|.++|.+|..+|++++|+..++++++++|++..+++.
T Consensus        35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  113 (272)
T 3u4t_A           35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ  113 (272)
T ss_dssp             CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence            3444455555555555555555555555555 2221    2235555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      +|.++..+|++++|+
T Consensus       114 l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A          114 IGSYFYNKGNFPLAI  128 (272)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHccCHHHHH
Confidence            555555555555554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.93  E-value=5.7e-09  Score=109.27  Aligned_cols=92  Identities=34%  Similarity=0.533  Sum_probs=88.3

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~  540 (554)
                      .+.++.++.+|+.+++.|+|++|+..|+++++.+| +..+|.++|.+|+++|+|++|+..++++++++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35788999999999999999999999999999999 58999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHhc
Q 008755          541 AREMLGYYKEAIE  553 (554)
Q Consensus       541 ~~~~~~~~~~A~~  553 (554)
                      ++..+|++++|++
T Consensus        82 ~~~~~g~~~~A~~   94 (514)
T 2gw1_A           82 ANEGLGKFADAMF   94 (514)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHHhhHHHHHH
Confidence            9999999999974

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.91  E-value=2.4e-09  Score=95.51  Aligned_cols=71  Identities=11%  Similarity=-0.017  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHhc
Q 008755          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       483 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++  ..++++++.++..+|++++|+.
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            3444555566677777778888888888888888888888888887765  5577788888888887777753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.91  E-value=5.7e-09  Score=97.21  Aligned_cols=93  Identities=13%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEA  519 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~  519 (554)
                      +....+++.+|.++++.|+|++|+..|+++++.+|++..   +++.+|.++++                  ++++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            344678999999999999999999999999999999864   78999999987                  568999999


Q ss_pred             HHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHhc
Q 008755          520 DCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       520 ~~~~al~l~p~~~~~~-----------------~~~g~~~~~~~~~~~A~~  553 (554)
                      .|+++++.+|++..+.                 +.+|.+|...|++++|+.
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  168 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN  168 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999999999987554                 678899999999999874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.90  E-value=6.5e-09  Score=97.98  Aligned_cols=92  Identities=35%  Similarity=0.498  Sum_probs=87.5

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK  533 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~  533 (554)
                      +..++.++.+|..++..|+|++|+..|+++++.+ ++..++.++|.+|..+|++++|+..++++++++|++       ..
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            3578899999999999999999999999999999 999999999999999999999999999999999977       79


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++.+|.++..+|++++|++
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~  100 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIE  100 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHH
Confidence            99999999999999999974

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.90  E-value=4.1e-09  Score=105.34  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-----  531 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----  531 (554)
                      ....|+++..++.+|..+...|++++|+..|+++++++|++..+++++|.+|.++|++++|+..|+++++++|++     
T Consensus       244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  323 (368)
T 1fch_A          244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  323 (368)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence            334567889999999999999999999999999999999999999999999999999999999999999999988     


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ------VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ------~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                            ..+++.+|.++..+|++++|.+
T Consensus       324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          324 EGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             cccchhhHHHHHHHHHHHHhCChHhHHH
Confidence                  8999999999999999998864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.90  E-value=5.8e-09  Score=101.38  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       472 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A  551 (554)
                      +.+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|+++.+++++|.++..+|+++++
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            33445689999999999999999999999999999999999999999999999999999999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.90  E-value=7.4e-09  Score=98.79  Aligned_cols=90  Identities=20%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++++|...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            66788899999999999999999999999999999999999999999999999999999999999999999999994455


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      ..+++++|++
T Consensus       154 ~~~~~~~A~~  163 (272)
T 3u4t_A          154 YNKEYVKADS  163 (272)
T ss_dssp             HTTCHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5568888864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.89  E-value=8.3e-09  Score=86.70  Aligned_cols=84  Identities=10%  Similarity=0.134  Sum_probs=72.6

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      .+...+..+|+++..+.++|.++++.|+|++|+..|+++|+++|++       ..+|.++|.++..+++|++|++.|+++
T Consensus        30 ~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           30 HYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344455577899999999999999999999999999999998875       358999999999999999999999999


Q ss_pred             HHcCCCCHHHHH
Q 008755          525 INLDKKNVKAYL  536 (554)
Q Consensus       525 l~l~p~~~~~~~  536 (554)
                      ++++|+ ++...
T Consensus       110 l~~~~~-~~~~~  120 (127)
T 4gcn_A          110 LSEFRD-PELVK  120 (127)
T ss_dssp             HHHSCC-HHHHH
T ss_pred             HhhCcC-HHHHH
Confidence            999885 44433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.89  E-value=9.1e-09  Score=100.84  Aligned_cols=97  Identities=15%  Similarity=0.027  Sum_probs=91.7

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...+..+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..++++++++|++..+++
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  197 (330)
T 3hym_B          118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH  197 (330)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH
Confidence            33456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++..+|++++|++
T Consensus       198 ~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          198 EVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcccHHHHHH
Confidence            99999999999999974

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.88  E-value=8.3e-09  Score=101.01  Aligned_cols=96  Identities=13%  Similarity=0.067  Sum_probs=91.2

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------  530 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------  530 (554)
                      ...|++...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|+       
T Consensus       200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          200 ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            3456778899999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 -----NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 -----~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                           +..+++.++.++..+|++++|.+
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence                 79999999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.88  E-value=7.3e-09  Score=101.55  Aligned_cols=95  Identities=15%  Similarity=-0.035  Sum_probs=90.2

Q ss_pred             cChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..|.++..++.+|..++..| ++++|+..|+++++.+|++..+|..+|.++..+|++++|+..++++++++|++..+++.
T Consensus        85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  164 (330)
T 3hym_B           85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY  164 (330)
T ss_dssp             HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence            45677889999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHhc
Q 008755          538 RGTAREMLGYYKEAIE  553 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~~  553 (554)
                      +|.++..+|++++|++
T Consensus       165 l~~~~~~~~~~~~A~~  180 (330)
T 3hym_B          165 IGLEYGLTNNSKLAER  180 (330)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhHHHHHH
Confidence            9999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.87  E-value=2.4e-09  Score=103.94  Aligned_cols=100  Identities=13%  Similarity=-0.042  Sum_probs=69.3

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------HHHHhcCCCH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT----------------------------------EAIKLNGNNA  498 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~----------------------------------~al~~~p~~~  498 (554)
                      +......+|+++.+++.+|..+...|++++|+..|+                                  ++++.+|++.
T Consensus       140 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~  219 (287)
T 3qou_A          140 LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDA  219 (287)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccH
Confidence            334445566777777777777777777777654444                                  4455677777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHh
Q 008755          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       499 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      .+++++|.+|...|++++|+..|+++++++|++  ..++.+++.++..+|+.++|+
T Consensus       220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            777777777777777777777777777777776  667777777777777766664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=1.4e-08  Score=94.56  Aligned_cols=91  Identities=13%  Similarity=0.042  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHH
Q 008755          463 SAEIAKEKGNQAYK------------------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAA  507 (554)
Q Consensus       463 ~~~~~~~~g~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~a~~  507 (554)
                      ...+++.+|.+++.                  .|++++|+..|+++++.+|++..++                 ..+|.+
T Consensus        77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~  156 (225)
T 2yhc_A           77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY  156 (225)
T ss_dssp             HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578889988876                  5799999999999999999986554                 578999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHhc
Q 008755          508 YLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |++.|+|++|+..|+++++..|+++   ++++.+|.++..+|++++|++
T Consensus       157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence            9999999999999999999999986   689999999999999999974

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.83  E-value=1.4e-08  Score=98.49  Aligned_cols=76  Identities=8%  Similarity=0.024  Sum_probs=70.2

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      ..+......+|++...++++|..+...|++++|+..|+++++.+|++  ..++.+++.++..+|+.++|+..|++++.
T Consensus       206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            34455567789999999999999999999999999999999999998  88999999999999999999999999886

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.82  E-value=1.7e-08  Score=90.02  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008755          429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  508 (554)
Q Consensus       429 ~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  508 (554)
                      .++..+..+...-   ....+...+......+|+++.+++.+|..+...|++++|+..|+++++.+| ++..+..++.+.
T Consensus         8 ~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~   83 (176)
T 2r5s_A            8 QLLKQVSELLQQG---EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE   83 (176)
T ss_dssp             THHHHHHHHHHTT---CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence            3445555443322   222233344455667789999999999999999999999999999999999 887777666553


Q ss_pred             H-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          509 L-ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       509 ~-~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      + ...+..+|+..++++++++|++..+++++|.++..+|++++|++
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  129 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE  129 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            3 33445568999999999999999999999999999999999974

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.81  E-value=2.6e-08  Score=94.92  Aligned_cols=96  Identities=18%  Similarity=0.000  Sum_probs=86.3

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...++.+|..++..|++++|+..|+++++++|++..++.++|.+|..+|++++|+..++++++++|++...+.
T Consensus        70 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A           70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999997777


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      ..+.+ ...|++++|+.
T Consensus       150 ~~~~~-~~~~~~~~A~~  165 (275)
T 1xnf_A          150 WLYLA-EQKLDEKQAKE  165 (275)
T ss_dssp             HHHHH-HHHHCHHHHHH
T ss_pred             HHHHH-HHhcCHHHHHH
Confidence            66655 56688888864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.81  E-value=1.6e-08  Score=84.27  Aligned_cols=88  Identities=13%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      ..|.+...++.+|..++..|++++|+..|+++++.+|++       ..+++++|.+|..+|++++|+..++++++++| +
T Consensus        33 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~  111 (131)
T 1elr_A           33 LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-T  111 (131)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C
T ss_pred             cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence            346778899999999999999999999999999999887       89999999999999999999999999999999 6


Q ss_pred             HHHHHHHHHHHHHcCC
Q 008755          532 VKAYLRRGTAREMLGY  547 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~  547 (554)
                      ......++.++..+++
T Consensus       112 ~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A          112 PDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.80  E-value=5.1e-08  Score=96.49  Aligned_cols=92  Identities=20%  Similarity=0.263  Sum_probs=86.7

Q ss_pred             hhHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          462 QSAEIAKEK------------GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       462 ~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      ++...+..+            |..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  185 (359)
T 3ieg_A          106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS  185 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            666666665            79999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          530 KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++..+++.+|.++..+|++++|++
T Consensus       186 ~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          186 DNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.80  E-value=1.4e-08  Score=97.02  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----  527 (554)
                      .+.....+..+|..+...|++++|+..|++++++        +|....++.++|.+|+.+|++++|+..+++++++    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5778899999999999999999999999999998        4667889999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 ----DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          +|....+++++|.++..+|++++|++
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                77778899999999999999999974

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.79  E-value=1.7e-08  Score=98.12  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC---
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~---  531 (554)
                      ..+..+.++|.++...|++++|+.+|++++++.+..      ..++.++|.+|... |++++|+.+|++++++.|++   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            457899999999999999999999999999997753      56899999999995 99999999999999998854   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ..++.++|.++..+|++++|++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~  179 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASD  179 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence               5678999999999999999975

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.79  E-value=5.7e-08  Score=78.37  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      .+..++.+|..+++.++|+.|+..|++|++..       +....++.++|.+|+++|++++|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35678999999999999999999999999873       34578999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 008755          536 LRRGTA  541 (554)
Q Consensus       536 ~~~g~~  541 (554)
                      .++...
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            888744

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.78  E-value=3.8e-09  Score=105.10  Aligned_cols=81  Identities=17%  Similarity=0.049  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..++++|.++++.|+|++|+.+|+++|+++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.+...
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999988544


Q ss_pred             c
Q 008755          545 L  545 (554)
Q Consensus       545 ~  545 (554)
                      .
T Consensus       311 ~  311 (338)
T 2if4_A          311 E  311 (338)
T ss_dssp             -
T ss_pred             H
Confidence            4

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=2.7e-08  Score=96.62  Aligned_cols=92  Identities=20%  Similarity=0.198  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008755          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-  533 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-  533 (554)
                      ..+..+.++|.++... |++++|+.+|++++++.|.+      ..++.++|.+|.++|+|++|+..|+++++++|++.. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            3467899999999996 99999999999999998754      568999999999999999999999999999987643 


Q ss_pred             ------HHHHHHHHHHHcCCHHHHhc
Q 008755          534 ------AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ------~~~~~g~~~~~~~~~~~A~~  553 (554)
                            +++++|.++..+|++++|++
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                  68899999999999999974

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.77  E-value=7.4e-08  Score=93.52  Aligned_cols=93  Identities=9%  Similarity=-0.102  Sum_probs=81.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      +.+...+..+|..+.+.|++++|+..|+++++.+|++.......+  ..+...|++++|+..|+++++.+|+++.+++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            567889999999999999999999999999999999864433333  223344889999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|++
T Consensus       207 a~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          207 AACHMAQGRWEAAEG  221 (291)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999999975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.75  E-value=2.5e-08  Score=105.16  Aligned_cols=95  Identities=16%  Similarity=0.074  Sum_probs=87.3

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|+++..+..+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  384 (537)
T 3fp2_A          305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF  384 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|++
T Consensus       385 ~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          385 AEILTDRGDFDTAIK  399 (537)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.75  E-value=5.1e-08  Score=100.31  Aligned_cols=98  Identities=16%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             ccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---  532 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---  532 (554)
                      .....|.++..++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++.   
T Consensus        52 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  131 (450)
T 2y4t_A           52 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEK  131 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Confidence            34446788999999999999999999999999999999999999999999999999999999999999999999988   


Q ss_pred             HHHHHH------------HHHHHHcCCHHHHhc
Q 008755          533 KAYLRR------------GTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~------------g~~~~~~~~~~~A~~  553 (554)
                      .++..+            |.++...|++++|++
T Consensus       132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A          132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            765544            777999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=2.5e-08  Score=79.79  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       493 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+|+++.+++++|.+|+++|+|++|+..|+++++++|++..+++++|.+|..+|++++|++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~   62 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID   62 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999975

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=4.2e-08  Score=77.20  Aligned_cols=72  Identities=17%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             ChhhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .|++++.+..+|..++..++   .++|..+++++|++||++..+++.+|..+++.|+|++|+..++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46789999999999986665   7999999999999999999999999999999999999999999999999984

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.72  E-value=4.3e-08  Score=95.28  Aligned_cols=102  Identities=10%  Similarity=-0.054  Sum_probs=93.0

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHH
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCT  522 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~  522 (554)
                      .....+..+|+...+|+.++.++...+  ++++++..++++|+.+|++..+|+.++.++    ..+   +++++++..++
T Consensus        55 ~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           55 ITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            334456678899999999999999999  999999999999999999999999999999    777   78999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHH--HHhc
Q 008755          523 KAINLDKKNVKAYLRRGTAREMLGYYK--EAIE  553 (554)
Q Consensus       523 ~al~l~p~~~~~~~~~g~~~~~~~~~~--~A~~  553 (554)
                      ++++++|++..++++++.++..+++++  ++++
T Consensus       135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A          135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence            999999999999999999999999887  6653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.70  E-value=3e-08  Score=94.54  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=86.5

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----  527 (554)
                      .+..+..+..+|..++..|++++|+..|++++++.        |....++.++|.+|..+|++++|+..+++++++    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999883        556789999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 ----DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          +|....+++++|.++..+|++++|++
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  148 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEY  148 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                57778899999999999999999974

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.70  E-value=3e-08  Score=97.03  Aligned_cols=72  Identities=14%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHh
Q 008755          481 LKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       481 ~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~g~~~~~~~~~~~A~  552 (554)
                      ++|+..|++|++ ++|++..+|.++|.++...|++++|...|+++++++|++.. +|.+++.++..+|++++|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH
Confidence            555555555555 45555555555555555555555555555555555555544 5555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.70  E-value=6.6e-08  Score=102.72  Aligned_cols=103  Identities=10%  Similarity=0.066  Sum_probs=94.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAE  518 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~  518 (554)
                      ......+..+|+...+|+.++.++...++          +++++..|+++++.+|++..+|++++.++.+++  +|++++
T Consensus        50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence            33445567789999999999999999988          999999999999999999999999999999999  779999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHhc
Q 008755          519 ADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIE  553 (554)
Q Consensus       519 ~~~~~al~l~p~~~~~~~~~g~~~~~~~-~~~~A~~  553 (554)
                      ++++++++++|++..+|++++.++..++ .++++++
T Consensus       130 ~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A          130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence            9999999999999999999999999999 7887764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=1.3e-07  Score=90.38  Aligned_cols=120  Identities=20%  Similarity=0.142  Sum_probs=93.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHH
Q 008755          425 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATY  500 (554)
Q Consensus       425 ~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  500 (554)
                      ++...++.++..+.........   ...+.....  +.++.+++.+|..+..    .+++++|+..|+++++.+  ++.+
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A---~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQA---KKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHH---HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHH---HHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence            3444555666655443222221   122222222  5677889999999999    999999999999999886  8899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHhc
Q 008755          501 YSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAIE  553 (554)
Q Consensus       501 ~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~----~~~~~~A~~  553 (554)
                      ++++|.+|..    .+++++|+.+|+++++++  +..+++++|.+|..    .+++++|++
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~  135 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE  135 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH
Confidence            9999999999    999999999999999984  89999999999999    999999975

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.68  E-value=8.2e-08  Score=102.75  Aligned_cols=95  Identities=17%  Similarity=0.019  Sum_probs=82.8

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|.+...|..++..+.+.|++++|+..|+++++.+|++..+|+.++.+|.+.|++++|++.|+++++++|+++.+++.+
T Consensus       402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  481 (597)
T 2xpi_A          402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL  481 (597)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            35667788888888888889999999999998888888888888899999899999999999999998888888888889


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      +.+|...|++++|++
T Consensus       482 ~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          482 GVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999999999888864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.67  E-value=9.6e-08  Score=102.19  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..|++...+..+|..+.+.|++++|+..|+++++++|++..+|+.++.+|.+.|++++|++.|+++++++|++..+++.+
T Consensus       368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  447 (597)
T 2xpi_A          368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL  447 (597)
T ss_dssp             HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      +.+|...|++++|++
T Consensus       448 ~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          448 GMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999999975

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.67  E-value=1.7e-08  Score=89.80  Aligned_cols=83  Identities=13%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCH-
Q 008755          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY-  548 (554)
Q Consensus       471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~-~~~~~~~-  548 (554)
                      +..++..|++++|+..|+++++.+|++..+|+.+|.+|+..|+|++|+..|+++++++|++..+++.+|.+ +...|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999 7899998 


Q ss_pred             -HHHhc
Q 008755          549 -KEAIE  553 (554)
Q Consensus       549 -~~A~~  553 (554)
                       ++|++
T Consensus        97 ~~~A~~  102 (177)
T 2e2e_A           97 TAQTRA  102 (177)
T ss_dssp             CHHHHH
T ss_pred             hHHHHH
Confidence             88864

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=9.1e-08  Score=91.02  Aligned_cols=123  Identities=15%  Similarity=0.012  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHH
Q 008755          427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNR  504 (554)
Q Consensus       427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~  504 (554)
                      +...+..+..+...-+..   .+...+.......|++. .++.+|..+++.++|++|+..|+++++..+..  ..+++++
T Consensus       102 ~dl~LayA~~L~~~g~y~---eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYA---DAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHH---HHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence            444555555554332222   22233334444567888 99999999999999999999999887753221  3589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          505 AAAYLESGSFLQAEADCTKAINLD--KK-NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       505 a~~~~~~~~~~~A~~~~~~al~l~--p~-~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |.++..+|++++|+.+|++++...  |. ..++++++|.++..+|+.++|.+
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999665  55 67899999999999999999974

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.64  E-value=1.2e-07  Score=92.06  Aligned_cols=92  Identities=20%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (554)
                      ....++..+|.++...|+|++|+.+|+++++.       .+....+++++|.+|.++|+|++|+..+++++++.+..   
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            45678999999999999999999999999953       22235689999999999999999999999999987544   


Q ss_pred             ---HHHHHHHHHHHHHcCC-HHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGY-YKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~-~~~A~~  553 (554)
                         ..+++++|.++..+|+ +++|++
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence               7899999999999995 688874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=2.4e-07  Score=89.83  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----  530 (554)
                      ....+++.+|..++..|+|++|+..|++++   +..|++.    .+++++|.+|..+|+|++|+..+++++++.++    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            457799999999999999999999999999   5566543    68999999999999999999999999998643    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHH
Q 008755          531 --NVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       531 --~~~~~~~~g~~~~~~~~~~~A  551 (554)
                        ...+++++|.+|..+|++++|
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHH
Confidence              278899999999999999999

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.63  E-value=3.4e-07  Score=87.44  Aligned_cols=88  Identities=22%  Similarity=0.239  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      .++..++.+|..+..    .+++++|+..|+++++.+  ++.+++++|.+|..    .+++++|+.+|+++++++  +..
T Consensus        72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~  147 (273)
T 1ouv_A           72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD  147 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence            367889999999999    999999999999999884  88999999999999    999999999999999986  688


Q ss_pred             HHHHHHHHHHH----cCCHHHHhc
Q 008755          534 AYLRRGTAREM----LGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~----~~~~~~A~~  553 (554)
                      +++++|.+|..    .+++++|++
T Consensus       148 a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          148 GCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHH
Confidence            99999999999    999999874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.63  E-value=7.5e-08  Score=83.18  Aligned_cols=90  Identities=17%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------  531 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------  531 (554)
                      ...+..+|..++..|++++|+..|++++++.+..      ..++.++|.++..++++++|+..+++++++.+..      
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            4578888888888888888888888888775442      5678888888888888888888888888887766      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+++.+|.++..+|++++|++
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHH
Confidence            4567888888888888888864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.63  E-value=1.8e-07  Score=75.30  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~  531 (554)
                      .|.+...++.+|..++..|++++|+..|+++++.+|+  +..++.++|.++..+ +++++|++.++++++.+|.+
T Consensus        36 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            3467789999999999999999999999999999999  999999999999999 99999999999999999975

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=1.5e-08  Score=97.85  Aligned_cols=77  Identities=19%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~  531 (554)
                      ..+...|+++..++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|+|++|+..|+++++++|++
T Consensus        29 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           29 RAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            33445678899999999999999999999999999999999999999999999999999999999999999999865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.59  E-value=1.7e-07  Score=95.11  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=68.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  530 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~  530 (554)
                      +.....++.+|..++..|+|++|+..|+++++++|++.    .+++++|.+|+.+|+|++|+..+++++++      +|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            45566677777777777777777777777777777765    46777777777777777777777777777      455


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ...+++.+|.+|..+|++++|++
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~  147 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAI  147 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHH
Confidence            66677777777777777777753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.59  E-value=1.8e-07  Score=91.51  Aligned_cols=93  Identities=9%  Similarity=-0.132  Sum_probs=62.8

Q ss_pred             ChhhHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          460 QKQSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       460 ~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      .|.+.. .|..+|..+.+.|++++|+..|+++++.+|....+|...+...+. +|++++|+..|+++++++|++..++..
T Consensus       129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  208 (308)
T 2ond_A          129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA  208 (308)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            344444 677777777777777777777777777777666666655554333 567777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      ++..+..+|++++|+
T Consensus       209 ~~~~~~~~g~~~~A~  223 (308)
T 2ond_A          209 YIDYLSHLNEDNNTR  223 (308)
T ss_dssp             HHHHHHTTCCHHHHH
T ss_pred             HHHHHHHCCCHHHHH
Confidence            777777777776665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.59  E-value=1.2e-07  Score=91.81  Aligned_cols=99  Identities=14%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      ......|..+..+..+|..++..|++++|+..|++++++        +|....++..+|.+|..+|++++|+..++++++
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334557889999999999999999999999999999995        566788999999999999999999999999999


Q ss_pred             c--------CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          527 L--------DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       527 l--------~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +        +|....+++++|.++..+|++++|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  132 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP  132 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            8        35667889999999999999999974

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=1.2e-07  Score=85.83  Aligned_cols=92  Identities=9%  Similarity=-0.063  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKKN-  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p~~-  531 (554)
                      ..+..+..+|..+...|++++|+..|+++++      ..+....++.++|.+|..+|++++|+..+++++++   .+++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            5688999999999999999999999999998      44456778999999999999999999999999998   4433 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ..+++++|.++..+|++++|++
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~  128 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQ  128 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence               5578999999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.57  E-value=7.8e-08  Score=100.56  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=87.8

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...+..+|..+...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..++++++++|++..+++
T Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  376 (514)
T 2gw1_A          297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN  376 (514)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence            34456777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHhc
Q 008755          537 RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       537 ~~g~~~~~~~~~~~A~~  553 (554)
                      .+|.++..+|++++|++
T Consensus       377 ~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHH
Confidence            99999999999999864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.57  E-value=1.4e-07  Score=91.45  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=86.4

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----  527 (554)
                      .+.....+..+|..+...|++++|+..|++++++.        |....++.++|.+|..+|++++|+..+++++++    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999884        556778999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          528 ----DKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ----~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          +|....+++.+|.++..+|++++|++
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                77778899999999999999999974

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.56  E-value=1.9e-07  Score=94.20  Aligned_cols=93  Identities=17%  Similarity=0.072  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN-----LD-  528 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~-  528 (554)
                      +..+..+..+|..+...|+|++|+..|++++++.+..      ..+++++|.+|..+|++++|+.+++++++     .+ 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            4667899999999999999999999999999885543      35899999999999999999999999999     46 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |....+++++|.++..+|++++|++
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            7888999999999999999999974

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.56  E-value=2.2e-07  Score=91.36  Aligned_cols=99  Identities=6%  Similarity=-0.130  Sum_probs=91.5

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHc
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINL  527 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l  527 (554)
                      ......+..+|++..+|+.++.++...+ ++++++..++++|+.+|++..+|+.++.++..+ + +++++++.+++++++
T Consensus        75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~  154 (349)
T 3q7a_A           75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP  154 (349)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence            3344556778999999999999999999 599999999999999999999999999999998 8 999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH
Q 008755          528 DKKNVKAYLRRGTAREMLGYYK  549 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~~~~  549 (554)
                      +|+|..++++++.++..+++++
T Consensus       155 dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          155 DPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999988776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.54  E-value=3.1e-07  Score=79.20  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=80.3

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (554)
                      ...+..+..+|..++..|++++|+..|++++++.+.      ...++.++|.+|..+|++++|+..+++++++.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            467788999999999999999999999999987432      25688999999999999999999999999886543   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ..+++++|.++..+|++++|++
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~  110 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAID  110 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence               6678999999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.54  E-value=7.1e-07  Score=86.46  Aligned_cols=92  Identities=13%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV  532 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~p~~~  532 (554)
                      .....++.+|..+...|++++|+..|+++++..+..      ..+++++|.+|..+|+|++|+..|++++   +..|++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            344556778999999999999999999999875543      5689999999999999999999999999   5566643


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 ----KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ----~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          .+++++|.+|..+|++++|++
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~  217 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHH
Confidence                689999999999999999975

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.53  E-value=2.4e-07  Score=78.83  Aligned_cols=82  Identities=13%  Similarity=0.020  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+.+..|+.|..+.+.+   +.++++..+++.++.+ | ++.+++|++|..|+++++|++|.++++++|+++|+|.++..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            46788999999999988   7779999999999998 7 57899999999999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 008755          537 RRGTARE  543 (554)
Q Consensus       537 ~~g~~~~  543 (554)
                      .+-.+-.
T Consensus       110 Lk~~ie~  116 (152)
T 1pc2_A          110 LERLIDK  116 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.52  E-value=5.1e-07  Score=95.87  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=84.2

Q ss_pred             ccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+|++..+|+.++.++.+.+  +++++++.+++++++||++..+|++++.++..++ .+++++++++++|+++|.+..+
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            456799999999999999999  7799999999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 008755          535 YLRRGTAREML  545 (554)
Q Consensus       535 ~~~~g~~~~~~  545 (554)
                      |++++.++..+
T Consensus       181 W~~r~~ll~~l  191 (567)
T 1dce_A          181 WHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999886

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.52  E-value=2.2e-07  Score=90.77  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-----  531 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----  531 (554)
                      .+..+.++|.++.. |++++|+.+|++++++.+..      ..++.++|.+|.++|+|++|+..|++++++.|++     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            45677778888877 88888888888888776543      4677788888888888888888888888876543     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 -VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 -~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                       ..+++++|.++..+|++++|+.
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHH
Confidence             2366777778877888887764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.50  E-value=2.2e-07  Score=90.82  Aligned_cols=91  Identities=10%  Similarity=-0.001  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----  531 (554)
                      ..+..+.++|.++...|+|++|+.+|++++++.+.      ...++.++|.+|.. |+|++|+.+|++++++.+..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            55778999999999999999999999999998543      24689999999998 99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 --VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 --~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                        ..+++++|.+|..+|++++|++
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH
Confidence              5789999999999999999975

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.50  E-value=2e-07  Score=93.97  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-  531 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-  531 (554)
                      .+..+..++.+|..++..|++++|+.+|++++++.+.       ...+++++|.+|..+|+|++|+..+++++++.+.. 
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            3567899999999999999999999999999998443       35689999999999999999999999999986543 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 -----VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 -----~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                           ..+++++|.+|..+|++++|++
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                 2589999999999999999975

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.49  E-value=5.3e-07  Score=87.94  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV  532 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~  532 (554)
                      ....++..|..++..|++++|+..|+++++.+|++    ..++..+|.+|+..|++++|+..+++++++      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            34567777888888888888888888888888877    357778888888888888888888888777      44456


Q ss_pred             HHHHHHHHHHHHcCCHHHHhc
Q 008755          533 KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++.+|.++..+|++++|++
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~  104 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIV  104 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHH
Confidence            677888888888888888764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.49  E-value=2.3e-07  Score=89.97  Aligned_cols=89  Identities=12%  Similarity=0.059  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKKN  531 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p~~  531 (554)
                      ..+..+|..+...+++++|+.+|++++++.+..      ..+++++|.+|..+|+|++|+..|++++++       .+..
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            344568999999999999999999999975432      347999999999999999999999999953       2233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+++++|.+|..+|++++|++
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH
Confidence            5589999999999999999975

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.48  E-value=9.2e-07  Score=86.47  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADC  521 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~  521 (554)
                      ...+..+|++..+|+.++.++...++          +++++..++++|..+|.+..+|++++.++..+++  |++++.++
T Consensus        54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~  133 (331)
T 3dss_A           54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC  133 (331)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence            34456788889999999988877665          6889999999999999999999999999988884  89999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHhc
Q 008755          522 TKAINLDKKNVKAYLRRGTAREMLGY-YKEAIE  553 (554)
Q Consensus       522 ~~al~l~p~~~~~~~~~g~~~~~~~~-~~~A~~  553 (554)
                      +++++++|.|..++++++.++...++ ++++++
T Consensus       134 ~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          134 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            99999999999999999999988888 466653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.47  E-value=4.6e-07  Score=88.02  Aligned_cols=101  Identities=11%  Similarity=-0.026  Sum_probs=88.8

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGS------FLQAEADCT  522 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~  522 (554)
                      .........+|++..+|..++.++.+.++++  ++++.++++|+.+|.|..+|++++.++..+++      +++++++++
T Consensus       131 ~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~  210 (306)
T 3dra_A          131 DILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK  210 (306)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            3344556678899999999999999999988  99999999999999999999999999988887      999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008755          523 KAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       523 ~al~l~p~~~~~~~~~g~~~~~~~~~~~A  551 (554)
                      ++|+++|+|..++++++.++...|+..++
T Consensus       211 ~aI~~~p~n~SaW~y~~~ll~~~~~~~~~  239 (306)
T 3dra_A          211 DKIVKCPQNPSTWNYLLGIHERFDRSITQ  239 (306)
T ss_dssp             HHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence            99999999999999999999999985544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.46  E-value=3.5e-07  Score=94.75  Aligned_cols=97  Identities=15%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------------CCHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-------------------GSFLQA  517 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------~~~~~A  517 (554)
                      ....|.....+..+|..+...|++++|+..|+++++.+|++..+++++|.+|...                   +.+++|
T Consensus       240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A  319 (472)
T 4g1t_A          240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA  319 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred             HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence            3445678889999999999999999999999999999999999999999887543                   346788


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       518 ~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +..++++++++|.+..+++.+|.++..+|++++|++
T Consensus       320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~  355 (472)
T 4g1t_A          320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEY  355 (472)
T ss_dssp             HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence            888888888888888888888888888888888864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.45  E-value=4.7e-07  Score=91.20  Aligned_cols=92  Identities=18%  Similarity=0.064  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDKK  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~p~  530 (554)
                      ..+..+..+|..+...|+|++|+..|++++++.+.      ...+++++|.+|..+|++++|+..++++++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            56788999999999999999999999999987431      346899999999999999999999999999     7888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ...+++++|.++..+|++++|++
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHH
Confidence            89999999999999999999974

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.45  E-value=8.6e-07  Score=86.67  Aligned_cols=88  Identities=10%  Similarity=0.044  Sum_probs=83.4

Q ss_pred             ccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+|++..+|..++.++...+  ++++++..++++++.+|.|..+|++++.+...++. +++++++++++|+++|.|..+
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            356799999999999999988  49999999999999999999999999999999999 699999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 008755          535 YLRRGTAREML  545 (554)
Q Consensus       535 ~~~~g~~~~~~  545 (554)
                      +++++.++..+
T Consensus       182 W~~R~~ll~~l  192 (331)
T 3dss_A          182 WHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.44  E-value=6e-07  Score=90.52  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~  531 (554)
                      .....++.+|..++..|++++|+..|+++++.+|++.    .++..+|.+|+.+|+|++|+..+++++++      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3456778888888888888888888888888888873    57888888888888888888888888877      3445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+++.+|.++..+|++++|++
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~  108 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIV  108 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Confidence            6678888888888888888864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.43  E-value=2e-07  Score=94.56  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN  531 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~  531 (554)
                      +..++.+|..++..|++++|+..|++++++      +|....++.++|.+|..+|++++|+..|++++++      .+..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence            468999999999999999999999999998      6777889999999999999999999999999999      6667


Q ss_pred             HHHHHHHHHHHHHcCC
Q 008755          532 VKAYLRRGTAREMLGY  547 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~~  547 (554)
                      ..+++++|.+|..+|+
T Consensus       166 ~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCc
Confidence            8899999999999999

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.43  E-value=9.5e-07  Score=91.47  Aligned_cols=86  Identities=13%  Similarity=-0.015  Sum_probs=68.2

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDK  529 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p  529 (554)
                      .+.....|.++|.+|+..|++++|+.+|++++++.        +..+.++.++|.++...+  +|++|+.+|+++++++|
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            45667788888888888888888888888888763        345778888887776654  58888888888888888


Q ss_pred             CCHHHHHHHHHHHHHc
Q 008755          530 KNVKAYLRRGTAREML  545 (554)
Q Consensus       530 ~~~~~~~~~g~~~~~~  545 (554)
                      +++.+++.++.++..+
T Consensus       170 ~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          170 KNPEFTSGLAIASYRL  185 (472)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            8888888888876544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.42  E-value=4.7e-07  Score=81.88  Aligned_cols=94  Identities=15%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--K  530 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~  530 (554)
                      .+..+..+..+|..+...|++++|+..|++++++   .++    ...++.++|.++..+|++++|+..+++++++.+  .
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            4567889999999999999999999999999998   442    356799999999999999999999999998743  2


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 N----VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~----~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +    ..++.++|.++..+|++++|++
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            2    3356899999999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.40  E-value=7.5e-07  Score=81.88  Aligned_cols=91  Identities=11%  Similarity=-0.027  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCC
Q 008755          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKN  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~  531 (554)
                      .++.+++++|..+..    .+++++|+..|+++++.++  +++.+++++|.+|..    .+++++|+.+|++++++ +.+
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~  161 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT  161 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence            567889999999998    8999999999999999987  358999999999999    88999999999999999 678


Q ss_pred             HHHHHHHHHHHHHcC------CHHHHhc
Q 008755          532 VKAYLRRGTAREMLG------YYKEAIE  553 (554)
Q Consensus       532 ~~~~~~~g~~~~~~~------~~~~A~~  553 (554)
                      ..+++++|.+|....      ++++|++
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~  189 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALH  189 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            889999999998653      7888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.40  E-value=1e-06  Score=88.85  Aligned_cols=93  Identities=20%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (554)
                      +.....+..+|..++..|++++|+..|++++++.+...      .++.++|.+|..+|++++|+..+++++++.+..   
T Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            44556677777777777777777777777776654432      266777777777777777777777777666544   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ..+++.+|.++..+|++++|++
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHH
Confidence               5566677777777777777653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.35  E-value=1.1e-06  Score=80.74  Aligned_cols=121  Identities=11%  Similarity=-0.027  Sum_probs=89.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCHHH
Q 008755          425 GGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATY  500 (554)
Q Consensus       425 ~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~  500 (554)
                      ++......++..+...-   ....+..-+.....  ..++.+++++|..+.. +    ++++|+.+|+++++  +.++.+
T Consensus        16 g~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSG---DYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             CCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHH
Confidence            44455566666654422   11112222222222  3577889999999887 6    89999999999964  568899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH----cCCHHHHhc
Q 008755          501 YSNRAAAYLE----SGSFLQAEADCTKAINLDK--KNVKAYLRRGTAREM----LGYYKEAIE  553 (554)
Q Consensus       501 ~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~~~~~~~~g~~~~~----~~~~~~A~~  553 (554)
                      ++++|.+|..    .+++++|+.+|++++++.+  +++.+++++|.+|..    .+++++|++
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  150 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE  150 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            9999999987    8899999999999999887  458999999999999    888888864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.28  E-value=2.3e-06  Score=86.03  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=82.6

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--  530 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--  530 (554)
                      .+..+..++.+|..++..|++++|+.+|++++++.+.       ...+++++|.+|..+|+|++|+..+++++++.+.  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4678899999999999999999999999999987543       2558899999999999999999999999997431  


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 ----NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ----~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                          ...+++++|.+|..+|++++|++
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~  243 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVE  243 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                24578999999999999999975

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.27  E-value=1.8e-06  Score=89.59  Aligned_cols=90  Identities=13%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK  530 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~  530 (554)
                      +....+.+..+..+|+|++|+..|+++|++     .|++   ...++++|.+|..+|+|++|+..++++|++     .|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            334455666778899999999999999976     3444   467999999999999999999999999977     355


Q ss_pred             CH---HHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NV---KAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~---~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++   ..++++|.+|..+|+|++|+.
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~  414 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHG  414 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            54   468999999999999999974

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.27  E-value=8.1e-07  Score=86.59  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-----  531 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----  531 (554)
                      ....+..+|..++..|++++|+..|++++++      .+....++..+|.+|..+|++++|+..+++++++.+..     
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  121 (338)
T 3ro2_A           42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG  121 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence            3678999999999999999999999999987      45567899999999999999999999999999986643     


Q ss_pred             -HHHHHHHHHHHHHcCC
Q 008755          532 -VKAYLRRGTAREMLGY  547 (554)
Q Consensus       532 -~~~~~~~g~~~~~~~~  547 (554)
                       ..+++.+|.++..+|+
T Consensus       122 ~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A          122 EARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCc
Confidence             4489999999999999

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.26  E-value=7.6e-06  Score=80.36  Aligned_cols=90  Identities=12%  Similarity=0.028  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      .+++..+..........++|+..++++|+++|++..+|+.++.++..++ +++++++.++++++.+|++..+++.++.++
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL  133 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3344444444555566678999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             HHc-C-CHHHHhc
Q 008755          543 EML-G-YYKEAIE  553 (554)
Q Consensus       543 ~~~-~-~~~~A~~  553 (554)
                      ..+ + +++++++
T Consensus       134 ~~l~~~~~~~EL~  146 (349)
T 3q7a_A          134 DRISPQDPVSEIE  146 (349)
T ss_dssp             HHHCCSCCHHHHH
T ss_pred             HHhcCCChHHHHH
Confidence            988 7 7776653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.25  E-value=3.2e-06  Score=87.71  Aligned_cols=96  Identities=8%  Similarity=-0.021  Sum_probs=82.9

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-  527 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-  527 (554)
                      -..+|..+..+.++|..|..+|+|++|+.+|+++|++     .|++   ...++|+|.+|..+|+|++|+..|++|+++ 
T Consensus       344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999976     4555   457899999999999999999999999986 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHcCCHHHHh
Q 008755          528 ----DKKNVK---AYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       528 ----~p~~~~---~~~~~g~~~~~~~~~~~A~  552 (554)
                          -|+++.   .+.+++.++..+++|++|.
T Consensus       424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                466644   4568899999999988875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.25  E-value=2e-06  Score=69.21  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       497 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +...++++|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   59 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ   59 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999975

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.25  E-value=1.8e-05  Score=67.08  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008755          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-  544 (554)
Q Consensus       470 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~-  544 (554)
                      +|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            899998889999999999999887  688999999999998    88999999999999987  679999999999998 


Q ss_pred             ---cCCHHHHhc
Q 008755          545 ---LGYYKEAIE  553 (554)
Q Consensus       545 ---~~~~~~A~~  553 (554)
                         .+++++|++
T Consensus       107 ~g~~~d~~~A~~  118 (138)
T 1klx_A          107 KGVVKNEKQAVK  118 (138)
T ss_dssp             SSSCCCHHHHHH
T ss_pred             CCCCcCHHHHHH
Confidence               888888864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.21  E-value=3.1e-06  Score=65.36  Aligned_cols=58  Identities=36%  Similarity=0.474  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       496 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+..+++++|.+++..++|++|+..|+++++++|++..+++++|.++..+|++++|++
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   64 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE   64 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999974

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.20  E-value=2.8e-06  Score=86.73  Aligned_cols=84  Identities=12%  Similarity=-0.018  Sum_probs=70.2

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---H
Q 008755          470 KGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV---K  533 (554)
Q Consensus       470 ~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~~---~  533 (554)
                      ......+.|+|++|+..|+++|++     .|+++   ..++++|.+|..+|+|++|+..|++++++     .|+++   .
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            344445578999999999999985     45554   57899999999999999999999999977     34554   4


Q ss_pred             HHHHHHHHHHHcCCHHHHhc
Q 008755          534 AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .++++|.+|..+|+|++|+.
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~  403 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEK  403 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHH
Confidence            68999999999999999974

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.19  E-value=5.7e-06  Score=64.81  Aligned_cols=60  Identities=18%  Similarity=0.083  Sum_probs=56.9

Q ss_pred             cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       494 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +|++++++..+|.+++..++   .++|...++++++++|+++.+++.+|..+.+.|+|++|++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~   64 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID   64 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            68999999999999987776   7999999999999999999999999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.17  E-value=2.8e-06  Score=89.73  Aligned_cols=93  Identities=10%  Similarity=0.004  Sum_probs=50.3

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .|++...|+.++..+.+.|++++|...|+++++++|.++ .+|.+++.++.+.|++++|.+.|++|++..|.....+...
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            445555555555555555555555555555555555553 3555555555555555555555555555555554444444


Q ss_pred             HHH-HHHcCCHHHHh
Q 008755          539 GTA-REMLGYYKEAI  552 (554)
Q Consensus       539 g~~-~~~~~~~~~A~  552 (554)
                      +.+ +...|++++|.
T Consensus       397 a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAF  411 (530)
T ss_dssp             HHHHHHHTCCHHHHH
T ss_pred             HHHHHHHcCChhHHH
Confidence            433 23455555554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.14  E-value=1.7e-06  Score=82.31  Aligned_cols=91  Identities=14%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRG  539 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~g  539 (554)
                      ...+....++..+...|+|++|.+.|++.+..+|++. +++.+|.++++.++|++|+..++++++..+..  ..+++++|
T Consensus       100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG  178 (282)
T 4f3v_A          100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG  178 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence            3456778889999999999999999999999999988 99999999999999999999999888764222  45899999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       179 ~al~~LG~~~eAl~  192 (282)
T 4f3v_A          179 VAAANLALFTEAER  192 (282)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHH
Confidence            99999999999974

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.10  E-value=1.3e-05  Score=80.15  Aligned_cols=91  Identities=12%  Similarity=-0.012  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----  530 (554)
                      ....+..+|..++..|++++|+..|++++++.        |....++.++|.+|+.+|++++|+..+++++++.+.    
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence            45668899999999999999999999999875        334567889999999999999999999999999875    


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 -NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 -~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                       ...+++++|.++...|++++|++
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH
Confidence             35678899999999999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.07  E-value=1.4e-06  Score=68.96  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             cccChhhHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          457 TFNQKQSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       457 ~~~~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      ....|++.. .++.+|.+++..|++++|+..|+++++++|++..++.+        +.+.+++..|+++++++|++.
T Consensus        27 l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           27 LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            334567788 99999999999999999999999999999999988754        567889999999998888653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.05  E-value=8.7e-06  Score=83.15  Aligned_cols=90  Identities=12%  Similarity=0.136  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK  530 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~  530 (554)
                      .+........+..+|+|++|+..|++++++     .|++   ...+++++.+|..+|+|++|+..+++++++     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            444555566677899999999999999975     3445   467899999999999999999999999976     345


Q ss_pred             CHH---HHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVK---AYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~---~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.   .++++|.+|..+|++++|+.
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~  392 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMK  392 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            544   68999999999999999974

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.04  E-value=3.2e-05  Score=75.88  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------------------------
Q 008755          463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAY-------------------------------  508 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-------------------------------  508 (554)
                      ++-.++.+|..++..+   ++.+|+.+|++|++++|++..+|..++.+|                               
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            3455667788887754   458899999999999999887776544443                               


Q ss_pred             -------------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          509 -------------LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       509 -------------~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                   ...|++++|+..+++|+.++| +..+|..+|.++...|++++|++
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e  331 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAAD  331 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence                         357999999999999999997 47888999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.04  E-value=1.9e-05  Score=83.35  Aligned_cols=88  Identities=10%  Similarity=-0.116  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ..|...+..+.+.|++++|+..|++|++..|.....+...+.. +...|++++|...|+++++++|+++.++..++..+.
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4666667666667777777777777777666665555554443 334667777777777777777777777777777776


Q ss_pred             HcCCHHHHh
Q 008755          544 MLGYYKEAI  552 (554)
Q Consensus       544 ~~~~~~~A~  552 (554)
                      .+|++++|.
T Consensus       437 ~~g~~~~Ar  445 (530)
T 2ooe_A          437 HLNEDNNTR  445 (530)
T ss_dssp             TTTCHHHHH
T ss_pred             hCCCHhhHH
Confidence            777766664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.99  E-value=1.2e-05  Score=80.40  Aligned_cols=91  Identities=10%  Similarity=-0.015  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD--------  528 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------  528 (554)
                      ....+..+|..++..|++++|+..|++++++.+..      ..++.++|.++...|+|++|+..+++++++.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            45678899999999999999999999999886543      2347899999999999999999999999985        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |....++.++|.++..+|++++|++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3345678889999999999999864

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.95  E-value=3.2e-05  Score=72.75  Aligned_cols=68  Identities=9%  Similarity=-0.033  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Q 008755          463 SAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~  530 (554)
                      +..+|..+|..|.+.     |+.++|..+|+|||+++|+. ...++..|..+.. .++++++.+.+++++..+|.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            444555555555552     55555555555555555542 5555555555544 25555555555555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.94  E-value=4.1e-05  Score=62.62  Aligned_cols=81  Identities=11%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ...+..|+.+..+.+..+..+   ++..++..++.+ | ..-++++.+|..++++|+|.+|..+++..|+.+|+|.++..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456788999999998887777   999999999887 5 46789999999999999999999999999999999999876


Q ss_pred             HHHHHH
Q 008755          537 RRGTAR  542 (554)
Q Consensus       537 ~~g~~~  542 (554)
                      .+..+-
T Consensus       113 Lk~~i~  118 (126)
T 1nzn_A          113 LERLID  118 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.88  E-value=3.3e-05  Score=79.75  Aligned_cols=86  Identities=14%  Similarity=0.031  Sum_probs=50.0

Q ss_pred             hhhHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCH
Q 008755          461 KQSAEIAKEKGNQ-A--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       461 ~~~~~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~l~p~~~  532 (554)
                      +.++.+++++|.. +  ...+++++|+..|+++++.  .++.+++++|.+|. .|     ++++|+.+|+++.   +.++
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            4455556666665 2  3456666666666666543  35666666666665 33     6666666666666   5666


Q ss_pred             HHHHHHHHHHHH----cCCHHHHh
Q 008755          533 KAYLRRGTAREM----LGYYKEAI  552 (554)
Q Consensus       533 ~~~~~~g~~~~~----~~~~~~A~  552 (554)
                      .+++++|.+|..    ..++++|+
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~  342 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKAL  342 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHH
Confidence            666666665554    23555554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.88  E-value=9e-05  Score=77.17  Aligned_cols=88  Identities=15%  Similarity=0.003  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      .++.+++.+|..++.    .+++++|+..|+++++.  .++.+++++|.+|..    .+++++|+.+|+++.+.  +++.
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            567889999999999    99999999999999876  588999999999998    88999999999999886  5799


Q ss_pred             HHHHHHHHHHH----cCCHHHHhc
Q 008755          534 AYLRRGTAREM----LGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~~----~~~~~~A~~  553 (554)
                      +++++|.+|..    .+++++|++
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHH
Confidence            99999999988    788998874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.86  E-value=5.7e-05  Score=77.09  Aligned_cols=89  Identities=11%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL-  527 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l-  527 (554)
                      ...++..+..+.++|.+|..+|+|++|+.+|+++|++     .|+++   ..++++|.+|..+|+|++|+..|++|+++ 
T Consensus       322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999976     35554   57899999999999999999999999987 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHc
Q 008755          528 ----DKKNVK---AYLRRGTAREML  545 (554)
Q Consensus       528 ----~p~~~~---~~~~~g~~~~~~  545 (554)
                          -|+++.   .+.+++.++..+
T Consensus       402 ~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          402 RVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHH
Confidence                466654   456666666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.86  E-value=5.1e-05  Score=77.37  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=68.0

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL-  527 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l-  527 (554)
                      -..+|..+..+.++|.+|..+|+|++|+.+|+++|++     .|+++   ..++|+|.+|..+|+|++|+..|++|+++ 
T Consensus       333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999976     45554   57999999999999999999999999987 


Q ss_pred             ----CCCCHHH
Q 008755          528 ----DKKNVKA  534 (554)
Q Consensus       528 ----~p~~~~~  534 (554)
                          .|+++..
T Consensus       413 ~~~lG~~Hp~~  423 (433)
T 3qww_A          413 EVAHGKDHPYI  423 (433)
T ss_dssp             HHHTCTTCHHH
T ss_pred             HHHcCCCChHH
Confidence                4666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.85  E-value=8.7e-05  Score=77.31  Aligned_cols=88  Identities=18%  Similarity=0.085  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      .++.+++.+|..+...|   ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..  ++.+
T Consensus       326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a  401 (490)
T 2xm6_A          326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA  401 (490)
T ss_dssp             TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence            35567888899888865   889999999999887  578899999999998    889999999999998864  6889


Q ss_pred             HHHHHHHHHH----cCCHHHHhc
Q 008755          535 YLRRGTAREM----LGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~----~~~~~~A~~  553 (554)
                      ++++|.+|..    .+++++|++
T Consensus       402 ~~~Lg~~y~~g~g~~~d~~~A~~  424 (490)
T 2xm6_A          402 QVQLGEIYYYGLGVERDYVQAWA  424 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHH
Confidence            9999999988    788888864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.84  E-value=9.5e-05  Score=62.54  Aligned_cols=74  Identities=20%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008755          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  533 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~  533 (554)
                      .++.+++++|..|..    .+++++|+..|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.++.  +..
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~  130 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SED  130 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHH
Confidence            467899999999999    89999999999999987  689999999999999    899999999999999984  567


Q ss_pred             HHHHHH
Q 008755          534 AYLRRG  539 (554)
Q Consensus       534 ~~~~~g  539 (554)
                      +.++++
T Consensus       131 A~~~l~  136 (138)
T 1klx_A          131 ACGILN  136 (138)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            776665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.81  E-value=4.9e-05  Score=64.56  Aligned_cols=75  Identities=11%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       479 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ....+...|.+.++.++.+.++.+++|.++.+.+   ++++++..+++.++.+ | ++.+++|++|.+++++++|++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456788888889989999999999999999988   7889999999999999 7 679999999999999999999975

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.80  E-value=3.2e-05  Score=79.87  Aligned_cols=91  Identities=14%  Similarity=-0.010  Sum_probs=52.7

Q ss_pred             ccccChhhHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcC
Q 008755          456 NTFNQKQSAEIAKEKGNQAYKD----KQWLKAISFYTEAIKLNGNNATYYSNRAAA-Y--LESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~l~  528 (554)
                      .....+..+..++++|..+...    +++++|+..|+++.   |+++.+++++|.+ |  ...+++++|+.+|+++.+. 
T Consensus       205 aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-  280 (452)
T 3e4b_A          205 GVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-  280 (452)
T ss_dssp             HHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-
Confidence            3334444455555666665443    46666666666665   5566666666666 2  3455666666666666653 


Q ss_pred             CCCHHHHHHHHHHHHHcC-----CHHHHh
Q 008755          529 KKNVKAYLRRGTAREMLG-----YYKEAI  552 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~-----~~~~A~  552 (554)
                       +++.+++++|.+|. .|     ++++|+
T Consensus       281 -g~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          281 -DQPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             -TCHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             -CCHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence             35666666666665 33     566554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.79  E-value=5.1e-05  Score=74.44  Aligned_cols=76  Identities=17%  Similarity=0.055  Sum_probs=67.8

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      .+.++..+..++..++..|++++|+..+++|++++|+ ..+|..+|.++...|++++|++.|++|+.++|.....++
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence            3577888988999999899999999999999999975 678899999999999999999999999999998754443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.65  E-value=0.00025  Score=60.56  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KK-  530 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~-  530 (554)
                      ...+++....++..+.|+.|+..+..++.+..++         .+++..+|.+++..++|.+|...|++||++.   ++ 
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456777778888889999888888877664332         2477888888999999999999998887652   11 


Q ss_pred             ---------------------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 ---------------------NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ---------------------~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                           ..+..|..+.||..++++++|+.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence                                 13678999999999999999974

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.54  E-value=0.00046  Score=78.18  Aligned_cols=65  Identities=14%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      .+.+..|+++|.++...|++++|+..|.||     ++++.|..++.++.++|+|++|+++|++|.+..++
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            356889999999999999999999999886     78999999999999999999999999998877743

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.51  E-value=0.0004  Score=66.83  Aligned_cols=90  Identities=9%  Similarity=-0.097  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYL  536 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~  536 (554)
                      ....++.+|.++...|++++|+..|.+.|..+|  ++.+++..++.+|+++|+.+.|.+.+++..+.+|+    +-....
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~  178 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL  178 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence            345567899999999999999999999999997  88999999999999999999999999999999983    233334


Q ss_pred             HH--HHHHHHcC--CHHHHh
Q 008755          537 RR--GTAREMLG--YYKEAI  552 (554)
Q Consensus       537 ~~--g~~~~~~~--~~~~A~  552 (554)
                      ++  +++....|  ++++|.
T Consensus       179 ~Laea~v~l~~g~~~~q~A~  198 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNF  198 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHH
T ss_pred             HHHHHHHHHHhCCccHHHHH
Confidence            44  55566556  777764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.48  E-value=0.0013  Score=54.52  Aligned_cols=80  Identities=8%  Similarity=0.010  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+..|+.+..+.+..+.   .+++..++..++.+|. .-+.+|.+|..++++|+|.+|..+++..|+.+|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            456788888888887654   5799999999999884 567899999999999999999999999999999999987665


Q ss_pred             HHHH
Q 008755          539 GTAR  542 (554)
Q Consensus       539 g~~~  542 (554)
                      ..+-
T Consensus       118 ~~Ie  121 (144)
T 1y8m_A          118 SMVE  121 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.46  E-value=0.0012  Score=54.01  Aligned_cols=82  Identities=7%  Similarity=0.008  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .++..|+.+..+.+..+   ..+++..++..++.+|. .-+.++.+|..++++|+|.+|..+++..|+.+|+|.++.-..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            35677888888877654   45799999999999884 578999999999999999999999999999999999997766


Q ss_pred             HHHHHH
Q 008755          539 GTAREM  544 (554)
Q Consensus       539 g~~~~~  544 (554)
                      ..+-.+
T Consensus       119 ~~Ie~k  124 (134)
T 3o48_A          119 SMVEDK  124 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.39  E-value=0.0011  Score=75.27  Aligned_cols=85  Identities=14%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHcCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------------------------NATYYSNRAAAYLESGS  513 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~~~a~~~~~~~~  513 (554)
                      .+++..|.+.+..+.+.|+|++|++.|.+|++.+++                           +...|.+.|.+++..|+
T Consensus      1131 AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A         1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred             cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            377889999999999999999999999998866533                           12345667777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       514 ~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |++|+.+|+++        ..|..++.+|.++|++++|++
T Consensus      1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence            77777777775        367777888888888877764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.38  E-value=0.00024  Score=66.84  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHc-CCHHHHh
Q 008755          482 KAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKN-VKAYLRRGTAREML-GYYKEAI  552 (554)
Q Consensus       482 ~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~~~~~~g~~~~~~-~~~~~A~  552 (554)
                      +|...++++|++||+  +..+|..+|..|.++     |+.++|.++|++|++++|+. ...++.+|..++.. +++++|.
T Consensus       181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~  260 (301)
T 3u64_A          181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD  260 (301)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence            688899999999999  667999999999996     99999999999999999975 99999999999884 8888875


Q ss_pred             c
Q 008755          553 E  553 (554)
Q Consensus       553 ~  553 (554)
                      +
T Consensus       261 ~  261 (301)
T 3u64_A          261 E  261 (301)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.24  E-value=0.00029  Score=70.95  Aligned_cols=78  Identities=14%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~  545 (554)
                      .|..++.++.+.|+|++|++.|+|+     +++..|...+.+....|+|+.|..+..+ |..+|+   -...+...|.+.
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~  220 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDR  220 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHC
Confidence            4444555555555555555555554     2444555555555555555555444433 222222   223344555556


Q ss_pred             CCHHHHh
Q 008755          546 GYYKEAI  552 (554)
Q Consensus       546 ~~~~~A~  552 (554)
                      |++++|+
T Consensus       221 G~~eEai  227 (449)
T 1b89_A          221 GYFEELI  227 (449)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            6666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.23  E-value=0.0014  Score=63.00  Aligned_cols=90  Identities=9%  Similarity=-0.060  Sum_probs=73.5

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCC--
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAA--YLESG--SFLQAEADCTKAINLDKK--  530 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~~--~~~~A~~~~~~al~l~p~--  530 (554)
                      +...+.+...+.++++.|+.+.|.+.+++..+.+|+    +-....+++..  .+..|  ++++|+..|+++.+..|+  
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            378889999999999999999999999999999983    23445555555  55556  899999999999988887  


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ....+++   ++.++|++++|.+
T Consensus       213 ~~~lLln---~~~~~g~~~eAe~  232 (310)
T 3mv2_B          213 TQLGLLN---LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHH---HHHHHTCHHHHHH
T ss_pred             cHHHHHH---HHHHcCCHHHHHH
Confidence            3445555   8999999999975

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.19  E-value=0.0011  Score=52.70  Aligned_cols=56  Identities=13%  Similarity=-0.028  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       498 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +.-.+.+|..++..++|..|+.+|++|++..       +.....+.++|.++.++|++++|+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~   67 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL   67 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence            4557889999999999999999999999974       3567889999999999999999974

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00088  Score=67.97  Aligned_cols=92  Identities=13%  Similarity=0.118  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC-
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KN-  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~-  531 (554)
                      ..+..+..+|..++..|+|++|+..+++++..      .+....++.+.+.+|..+++|++|...+++++.+.+   +. 
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            45788999999999999999999999999876      333467899999999999999999999999998743   22 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ...+..+|..+...++|++|..
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence               3456778889999999998853

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.0015  Score=66.31  Aligned_cols=91  Identities=8%  Similarity=-0.035  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  530 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~  530 (554)
                      .......++..+...|++++|+..|++++...+.      ...++.++|.+|..+|+|++|+..+++++..      .+.
T Consensus        94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~  173 (434)
T 4b4t_Q           94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS  173 (434)
T ss_dssp             HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence            3455667788888899999999999999976432      3678999999999999999999999999876      334


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ..+++..++.+|..+|++++|..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          174 LVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHH
Confidence            57789999999999999999864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.72  E-value=0.012  Score=50.23  Aligned_cols=81  Identities=16%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---C----------------------CHHHHHHHHHHHHHcCCHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFL  515 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~----------------------~~~~~~~~a~~~~~~~~~~  515 (554)
                      ....+.+...|+.+|.+++|..|+..|++||+...   .                      +.++.+.++.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            35678899999999999999999999999986521   1                      1268899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          516 QAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       516 ~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      +|+..++..-. .-..++.-..+|..|
T Consensus       140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            99998865322 224566666666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.66  E-value=0.006  Score=61.46  Aligned_cols=79  Identities=14%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .++..|..........|+++.|..+..+ |..+|++   ...+..+|.+.|++++|+..+++++.+++.+...+..+|.+
T Consensus       175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il  250 (449)
T 1b89_A          175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  250 (449)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            4688999999999999999999888876 3355544   45688899999999999999999999999999999999988


Q ss_pred             HHH
Q 008755          542 REM  544 (554)
Q Consensus       542 ~~~  544 (554)
                      |.+
T Consensus       251 ~~k  253 (449)
T 1b89_A          251 YSK  253 (449)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            854

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.27  E-value=0.012  Score=48.05  Aligned_cols=76  Identities=9%  Similarity=-0.024  Sum_probs=65.2

Q ss_pred             cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHh
Q 008755          478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL---QAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       478 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~---~A~~~~~~al~l~-p-~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      .....+...|.+.+..++...+..+++|.++.+..+-.   +++..++..++.+ | .+.+.+|.+|..++++|+|++|+
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            34556778888888888888999999999999888654   4999999999987 5 67889999999999999999997


Q ss_pred             c
Q 008755          553 E  553 (554)
Q Consensus       553 ~  553 (554)
                      +
T Consensus        95 ~   95 (126)
T 1nzn_A           95 K   95 (126)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.54  E-value=0.024  Score=60.98  Aligned_cols=98  Identities=10%  Similarity=-0.056  Sum_probs=82.3

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAI-SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----  528 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----  528 (554)
                      +.....|..++.|+..+......|+.++|. ..|++|+...|.+...|...+....+.+++++|.+.|+++++.-     
T Consensus       334 ~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~  413 (679)
T 4e6h_A          334 QAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA  413 (679)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            344456778999999999999999999997 99999999999999999999999999999999999999999752     


Q ss_pred             ------CC-----------CHHHHHHHHHHHHHcCCHHHHh
Q 008755          529 ------KK-----------NVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       529 ------p~-----------~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                            |.           ...+|..++....+.+..+.|.
T Consensus       414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR  454 (679)
T 4e6h_A          414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR  454 (679)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence                  53           3456777777777777777664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.01  E-value=0.097  Score=43.74  Aligned_cols=125  Identities=11%  Similarity=-0.066  Sum_probs=77.4

Q ss_pred             EEeccCCcHHHHHHHHHHHHHHHHH---HHHhhhcccccccccC--------hhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008755          420 FIARHGGDRFLLDTVQNMYASLQEQ---ADIATKSKLSTNTFNQ--------KQSAEIAKEKGNQAYKDKQWLKAISFYT  488 (554)
Q Consensus       420 ~~~~~~~d~~ll~~a~~le~~l~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~g~~~~A~~~~~  488 (554)
                      ++-.+.+-+.++.....+|..-...   -....+..+...+...        ..-+..|...+.. ...++.++|...|+
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            3445566677777777777652210   0011112222221111        1234555555543 55689999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008755          489 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       489 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~  546 (554)
                      .++.+...++.+|...|..-.+.|+..+|.+.+.+|+.+.|...+. +..+..-.+.|
T Consensus        85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~  141 (161)
T 4h7y_A           85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence            9988888888889999988889999999999999999998875554 34443333333

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.97  E-value=0.27  Score=41.78  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc------------
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--NL------------  527 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~l------------  527 (554)
                      ..++...-++..++-+|+|..++-++.+     -+.....+..+.||.++++|+.|+..+++.+  +.            
T Consensus        31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~  105 (242)
T 3kae_A           31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE  105 (242)
T ss_dssp             ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred             CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence            3445566678899999999999887743     2456777778899999999999999999999  32            


Q ss_pred             ---CCCCHHHHH-HHHHHHHHcCCHHHHhc
Q 008755          528 ---DKKNVKAYL-RRGTAREMLGYYKEAIE  553 (554)
Q Consensus       528 ---~p~~~~~~~-~~g~~~~~~~~~~~A~~  553 (554)
                         +|.+-+.++ .+|..+.+.|.-+||+.
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~  135 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIG  135 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhh
Confidence               355566555 46999999999999975

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.83  E-value=0.15  Score=52.40  Aligned_cols=81  Identities=20%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008755          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (554)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~  544 (554)
                      ..+..+|........+..|..+|.+|+.++|++...|+++|.++...++.-+|+=+|-+++.-...++.+.-++...+.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35677888888888999999999999999999999999999999999999999999999999888899999998888765


Q ss_pred             c
Q 008755          545 L  545 (554)
Q Consensus       545 ~  545 (554)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.074  Score=57.36  Aligned_cols=63  Identities=10%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      .....+..++..+..+|+|+-|+.+-++|+...|.....|+.++.||.++|+|+.|+-.+.-+
T Consensus       335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345577778888999999999999999999999999999999999999999999999766554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.63  E-value=0.46  Score=39.71  Aligned_cols=50  Identities=10%  Similarity=-0.037  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG  512 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~  512 (554)
                      +=+..|...+..-.++|+.++|...+.+||.+.|...+.+. .+...++.|
T Consensus        92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le-~a~~nl~~~  141 (161)
T 4h7y_A           92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE-IALRNLNLQ  141 (161)
T ss_dssp             TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH-HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH-HHHHhhhcC
Confidence            33888999999999999999999999999999998765443 333444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.62  E-value=0.18  Score=54.24  Aligned_cols=74  Identities=9%  Similarity=-0.129  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE-ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+.....|+++|...|.++..|...+..+...++.++|. +.|++|+...|.+...++.++......|++++|.+
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~  399 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET  399 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            345678899999999999999999999999999999997 99999999999999999999999999999988753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.43  E-value=0.21  Score=49.79  Aligned_cols=60  Identities=10%  Similarity=-0.022  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  526 (554)
                      ...+...+...|++++|+..+++++..+|-+-.+|..+-.+|+..|+..+|++.|++.-+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455666778888888888888888888777787777788888888888887776544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.31  E-value=0.18  Score=46.67  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       472 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+++.|+.++|+......|+.+|.+......+-+.+.-.|+|++|.+.++.+.+++|+....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            456788999999999999999999999999999999999999999999999999999987554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.39  E-value=0.83  Score=47.16  Aligned_cols=90  Identities=6%  Similarity=-0.073  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK-KNVKAYLRRG  539 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~g  539 (554)
                      +...|..+-..+.+.|++++|+..|++..+.  .| +...|+.+-..|.+.|++++|.+.+++..+..- .+...|..+-
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li  182 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL  182 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4567888889999999999999999998765  34 467888899999999999999999999887632 2677888899


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .+|.+.|+.++|.+
T Consensus       183 ~~~~~~g~~d~A~~  196 (501)
T 4g26_A          183 KVSMDTKNADKVYK  196 (501)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHhhCCCHHHHHH
Confidence            99999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.22  E-value=0.19  Score=54.19  Aligned_cols=52  Identities=12%  Similarity=0.156  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       501 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      +..-+..+...++|+-|+...++|+...|..-..|+.++.+|..+|+|+.|+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence            3334555668899999999999999999999999999999999999999996

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.06  E-value=0.4  Score=39.71  Aligned_cols=44  Identities=14%  Similarity=0.047  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  505 (554)
                      ..-+.++.++..+++.|+|++|..+.+..|+.+|+|.++.....
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45678999999999999999999999999999999987766543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.06  E-value=0.44  Score=38.93  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  507 (554)
                      ..-+.++.++..+++.|+|++|..+.++.|+.+|+|..+..-...+
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4567899999999999999999999999999999998876655433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.94  E-value=0.54  Score=46.78  Aligned_cols=51  Identities=14%  Similarity=0.010  Sum_probs=28.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       502 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      ..++.+++..|++.+++..+++++..+|-+-.++..+-.+|+..|+..+|+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al  225 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL  225 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344455555555555555555555555555555555555555555555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.92  E-value=1.4  Score=45.28  Aligned_cols=89  Identities=9%  Similarity=-0.134  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      ....|...+....+.++.+.|...|++| +..+.....|...|...+..+ +.+.|...|+++++..|+++..+..++..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3466777777777788899999999999 443345667777776666666 59999999999999889888877777777


Q ss_pred             HHHcCCHHHHh
Q 008755          542 REMLGYYKEAI  552 (554)
Q Consensus       542 ~~~~~~~~~A~  552 (554)
                      ....|+.+.|.
T Consensus       364 e~~~~~~~~aR  374 (493)
T 2uy1_A          364 LLRIGDEENAR  374 (493)
T ss_dssp             HHHHTCHHHHH
T ss_pred             HHHcCCHHHHH
Confidence            77777777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.81  E-value=5.1  Score=43.53  Aligned_cols=90  Identities=16%  Similarity=0.040  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hcCCCHHHHHHH-------------HHHHHHcCCHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--------LNGNNATYYSNR-------------AAAYLESGSFLQAEAD  520 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~-------------a~~~~~~~~~~~A~~~  520 (554)
                      ++...|..+|..+.+.++++.|+.+|.++-.        ....+.+.+..+             ..+|+++|++++|++.
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence            4567899999999999999999999988521        112233322222             2355566777777766


Q ss_pred             HHH------HHH----cCCCC---HHHHHHHHHHHHHcCCHHHH
Q 008755          521 CTK------AIN----LDKKN---VKAYLRRGTAREMLGYYKEA  551 (554)
Q Consensus       521 ~~~------al~----l~p~~---~~~~~~~g~~~~~~~~~~~A  551 (554)
                      |.+      |+.    ..|..   .......+.-+...|+++.|
T Consensus       759 ~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          759 LIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence            644      222    23333   13444556666666665444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.80  E-value=2.2  Score=42.25  Aligned_cols=87  Identities=11%  Similarity=0.020  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCH----H
Q 008755          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKNV----K  533 (554)
Q Consensus       467 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p~~~----~  533 (554)
                      -..+|..|+..|+|.+|+..+++.++--..      ..+++......|..++++.++.+.|.+|....   +.++    .
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            346899999999999999999998874221      24678888999999999999999999987664   1222    2


Q ss_pred             HHHHHHHHHH-HcCCHHHHhc
Q 008755          534 AYLRRGTARE-MLGYYKEAIE  553 (554)
Q Consensus       534 ~~~~~g~~~~-~~~~~~~A~~  553 (554)
                      ....-|..+. ..++|.+|-.
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~  202 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFS  202 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHH
Confidence            3455688888 7999998853

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.74  E-value=1.1  Score=51.26  Aligned_cols=90  Identities=13%  Similarity=0.073  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------cCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----------------------NGNNATYYSNRAAAYLESGSFLQAEA  519 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~  519 (554)
                      ++...+.+|.+++..|++++|..+|+++-..                       ....+.+|+.....+.+.+.++.+++
T Consensus       841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3344588999999999999999999887310                       11134577888888889999999999


Q ss_pred             HHHHHHHcCCC-CHH----HHHHHHHHHHHcCCHHHHh
Q 008755          520 DCTKAINLDKK-NVK----AYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       520 ~~~~al~l~p~-~~~----~~~~~g~~~~~~~~~~~A~  552 (554)
                      ..+.||+..+. +..    .|.++-..+..+++|++|.
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay  958 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH  958 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence            99999987653 322    4677788889999999984

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=86.19  E-value=2.1  Score=44.01  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       480 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+.....|+++|...|..+..|...+..+...++.++|...|++|+.. |.+...++..+
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~  253 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG  253 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            345677888888888888888888888888888889999999999988 88766555443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.90  E-value=2  Score=39.68  Aligned_cols=48  Identities=15%  Similarity=0.012  Sum_probs=40.8

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA  498 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~  498 (554)
                      ......+..+|.+++....+...+.-.|+|+.|+..++.+.+++|+..
T Consensus        18 ~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A           18 ELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            333444556789999999999999999999999999999999999864

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.47  E-value=2.4  Score=42.72  Aligned_cols=89  Identities=10%  Similarity=-0.091  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCH----HH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNV----KA  534 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~----~~  534 (554)
                      ...+..+|..+++.|++++|.+.|.++.+....   -.+.+.....+++..++|..+...+.++-.+-.  .++    ..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            346788999999999999999999998876433   356788888899999999999999999876622  222    23


Q ss_pred             HHHHHHHHHHcCCHHHHh
Q 008755          535 YLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~  552 (554)
                      ....|..+...++|.+|-
T Consensus       211 k~~~gl~~l~~r~f~~Aa  228 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAA  228 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHH
T ss_pred             HHHHHHHHHHhChHHHHH
Confidence            345577777788888774

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.38  E-value=5.8  Score=33.75  Aligned_cols=70  Identities=11%  Similarity=0.004  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNATY-YSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      .....+....++.+.++|.+|+..+++.|+  .               ||.+.+. ++.+|...-+.++-+||+..+...
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            345566778899999999999999999993  2               3445554 566899999999999999999999


Q ss_pred             HHcCCCCH
Q 008755          525 INLDKKNV  532 (554)
Q Consensus       525 l~l~p~~~  532 (554)
                      ...+|-..
T Consensus       141 f~~~~lf~  148 (242)
T 3kae_A          141 FGKSFLFS  148 (242)
T ss_dssp             HHHCCCHH
T ss_pred             cCCccccc
Confidence            98877543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.97  E-value=11  Score=32.45  Aligned_cols=30  Identities=10%  Similarity=-0.085  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI  491 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  491 (554)
                      ++...|..+|...+.+|+++-|+++|+++=
T Consensus        32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           32 NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            456789999999999999999999998853

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=82.47  E-value=12  Score=38.45  Aligned_cols=75  Identities=12%  Similarity=0.021  Sum_probs=62.8

Q ss_pred             cCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          478 KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       478 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++.++|+..|++..+.  .| +...|+.+-..|.+.|++++|++.+++..+.. ..+...|..+-.+|.+.|+.++|.+
T Consensus        84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence            4478899999987765  34 56789999999999999999999999988763 2368888899999999999999864

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=81.68  E-value=2.8  Score=42.95  Aligned_cols=53  Identities=17%  Similarity=0.008  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       500 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      .+..+|.+......+..|..+|.+|+.++|++...|+.+|.+....++.-+|+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~  206 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence            46678888888889999999999999999999999999999999998877764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.72  E-value=4.9  Score=43.67  Aligned_cols=47  Identities=23%  Similarity=0.100  Sum_probs=37.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      .+...|++++|++..+     .-++...|.++|..+.+.++++.|+.+|.++
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3455677777776643     2357889999999999999999999999985

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.42  E-value=18  Score=31.06  Aligned_cols=54  Identities=15%  Similarity=0.051  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  524 (554)
                      +++..|.   ...+.|+++.|.+..++.     ++...|..+|...+..|+++-|+.+|+++
T Consensus         7 D~~~rF~---LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFD---LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHH---HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHH---HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3444444   566789999999987764     67889999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	554
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	7e-50
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	2e-46
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	6e-28
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	4e-23
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	2e-21
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	8e-10
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-09
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.004
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-06
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.004

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  176 bits (448), Expect = 7e-50
 Identities = 86/399 (21%), Positives = 161/399 (40%), Gaps = 27/399 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
              G+  A+ D     G  T          +  +   +TVV  + E G   +GK  +DEF
Sbjct: 57  KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +     +    NP    ++PGGSS G+A AV+A +V  +LG DT G VR P++ CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK-ILRHVGHVLLQLPFAAQRSPRQIII 235
           ++G++P+YG VS  G++  ++SLD +G   +  +     +  +  +    A    R++  
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDF 234

Query: 236 ADDCFELLKIPADRVVQVVI-----KSTEKLFGRQVLKHENLG-EYFDSKVPSLKGFHKT 289
             +  E +      V + +      +   + F   +   E LG +    K+P +K    T
Sbjct: 235 LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVAT 294

Query: 290 -----------NGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML-----E 333
                      N    + ++   R + K     ++++       ++   I          
Sbjct: 295 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354

Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
             E        +R ++   ++ +L     ++TPT+     K+G  +     Y    F+  
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT-- 412

Query: 394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             A+++G   ++VP G+ +  P  V  I R   D  +  
Sbjct: 413 IPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFR 451

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  167 bits (424), Expect = 2e-46
 Identities = 85/406 (20%), Positives = 154/406 (37%), Gaps = 30/406 (7%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +    L G+   + D     G  T                T        +  A  IGK  
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLN 123

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG DT G +R P+
Sbjct: 124 MDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPA 183

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK----ILRHVGHVLLQLPFAAQR 228
           A+CG++G +P+YG VS  G++  ++SLD +G   R+ K    +L  +    +    +A  
Sbjct: 184 AYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPV 243

Query: 229 SPRQIIIA-DDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENLG-EYFDSKVPSLK 284
                        + LK+  P + + + V    ++     V   ++LG    +  +P+ K
Sbjct: 244 DDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTK 303

Query: 285 ------------GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML 332
                                  +       E  +    +  S       ++   I    
Sbjct: 304 FGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGT 363

Query: 333 -----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN 387
                   +   +  + +R  +++    + ++  ++V PT       LG  E + +    
Sbjct: 364 FALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLG--EEIDDPLTM 421

Query: 388 RAFSLL-SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
            A  LL +  +++G   ++VP G  +  P  + FI +   ++ L  
Sbjct: 422 YANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score =  114 bits (286), Expect = 6e-28
 Identities = 96/413 (23%), Positives = 151/413 (36%), Gaps = 43/413 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+   + D  +     T  G              + +V  L + GA  +GKT 
Sbjct: 69  RLRGPLHGIPLLLKDNINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTN 125

Query: 113 VDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   ++G +T G 
Sbjct: 126 LSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGS 185

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL-LQLPFAA 226
           +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR       V   +  +     
Sbjct: 186 IVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADP 245

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--LKHENLGEYFDSKVPSLK 284
             +        D    L     R  ++ +  T  L  R +  L  +   E   +    + 
Sbjct: 246 ATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVP 305

Query: 285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPAL-----------------------D 321
                 G      R +  YEFK     +  + +  L                       +
Sbjct: 306 VELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQE 365

Query: 322 PDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKE 379
             + A+    L     +     + R      I + L    +  LV PTT    P     +
Sbjct: 366 LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGD 425

Query: 380 MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
               +         S A+V+G   +TVP+G  D  P  + F+     +  L++
Sbjct: 426 DFPGES-------YSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 99.4 bits (246), Expect = 4e-23
 Identities = 84/393 (21%), Positives = 139/393 (35%), Gaps = 32/393 (8%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
              FA        +     +       PGGSSSG+A AV A ++  +LG  T G V  P+
Sbjct: 107 TTAFASRDPTATLNPHNTGHS------PGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQ 232
           A+CG    +PS+  +  +G+   S +LDTVG F    + L      +      +   P +
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAK 220

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292
                   +      +   +  +++  K   R     +                 +   E
Sbjct: 221 APRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQA------------IDLPEAVHE 268

Query: 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA 352
              +  +IQ +E               + P + A +   + ++    +  + I    R  
Sbjct: 269 AWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRE 328

Query: 353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
           +  + +   +L+T +     P         +   NR ++L+      G   V VP+    
Sbjct: 329 LGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVPVLKVG 381

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQA 445
             P  V  IAR G D   L T     A   E A
Sbjct: 382 GLPIGVQVIARFGNDAHALAT-----AWFLEDA 409

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.5 bits (236), Expect = 2e-21
 Identities = 75/438 (17%), Positives = 130/438 (29%), Gaps = 71/438 (16%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  ++ + F  +G+ +  G          +     VV  L   GA     T V + 
Sbjct: 97  LLYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 154

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
             S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PSAFCG
Sbjct: 155 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 214

Query: 177 ILGFRPSYGAVSHMGIIPI----STSLDTVGWFARDPKILRHVGHVL------------- 219
           I G +P+   +S  G+       +    ++G  ARD + L      L             
Sbjct: 215 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 274

Query: 220 ----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--------- 266
                +  + + R  R      D + +      R +    +  E      +         
Sbjct: 275 PLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPY 334

Query: 267 -LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDIS 325
            L+  + G  F     S     K +     +  LI      +     +  +   L P ++
Sbjct: 335 ALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLA 394

Query: 326 AEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSE 383
           A +  M   S   +   +      R ++ +  K   +  L+TP                 
Sbjct: 395 AFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRA--- 451

Query: 384 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKC----------------------------- 414
                A S   + +        VP+                                   
Sbjct: 452 ---TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVG 508

Query: 415 -PTSVSFIARHGGDRFLL 431
            P +V  +A    +   L
Sbjct: 509 LPVAVQCVALPWQEELCL 526

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (191), Expect = 3e-17
 Identities = 35/91 (38%), Positives = 53/91 (58%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +A+ LD ++VKA+   G  +  +  Y EAI 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIA 93

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G    + + + +AI+    A  L       + +   + L       A+     +I   + 
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRI 133

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
           + ++ L     R +    +  +E
Sbjct: 134 HQESELHSYLTRLIAAERERELE 156

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKKNV-------KAYLRRGTAREMLGYYKEAIE 553
            KAI + ++N        KAY R G +      YK+AI 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 11/80 (13%), Positives = 27/80 (33%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 529 KKNVKAYLRRGTAREMLGYY 548
               +AY   G   +  G  
Sbjct: 64  PLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 531 NVKAYLRRGTAREMLG 546
              AY   G   + + 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 23/94 (24%), Positives = 37/94 (39%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
                +     GN   + + + +A++ Y  A+ L+ N+A  + N A  Y E G    A  
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              +AI L      AY     A +  G   EA +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 22/90 (24%), Positives = 33/90 (36%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A +        Y+      AI  Y  AI+L  +    Y N A A  E GS  +AE     
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A+ L   +  +       +   G  +EA+ 
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVR 326

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 18/94 (19%), Positives = 35/94 (37%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           Q    +      N   +     +A   Y  A++L   +A   +N A    E G+  +A  
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              KA+ +  +   A+    +  +  G  +EA+ 
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 19/82 (23%), Positives = 32/82 (39%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
           N      +  +A + Y +AI+   N A  +SN    +   G    A     KA+ LD   
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 532 VKAYLRRGTAREMLGYYKEAIE 553
           + AY+  G   +    +  A+ 
Sbjct: 203 LDAYINLGNVLKEARIFDRAVA 224

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 8/51 (15%), Positives = 14/51 (27%)

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
             A    ++G F  AE  C +    +  N    L   +          +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH 54

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-- 515
             Q   A      G       +   AI  + +A+ L+ N          AY+  G+ L  
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-------AYINLGNVLKE 215

Query: 516 -----QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                +A A   +A++L   +   +          G    AI+
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512
           + A       +   +  +  +A+  Y EAI+++   A  YSN      E  
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 509
           +  +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y 
Sbjct: 29  EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 8/67 (11%), Positives = 24/67 (35%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N  +      E+G +  ++     A+  +  A++ +  +   +        E+   L A 
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 519 ADCTKAI 525
           +   + +
Sbjct: 74  SALRRCL 80

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 485 SFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
           + Y +  +    N               L+ G    A      A+  D K+++A+   GT
Sbjct: 2   ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61

Query: 541 AREMLGYYKEAIE 553
            +        AI 
Sbjct: 62  TQAENEQELLAIS 74

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 8e-10
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           T+AI LDKK +K Y RR  +   LG ++ A+ 
Sbjct: 68  TRAIELDKKYIKGYYRRAASNMALGKFRAALR 99

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------NGNNATYYSNRAA 506
           + A I KEKG   +K  ++++A+  Y + +                        + N A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 119

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 16/84 (19%), Positives = 33/84 (39%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
              A  + Q  +A+    EAIK +  +A+  S+        G F +A+    ++I L  +
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 531 NVKAYLRRGTAREMLGYYKEAIEG 554
            +    +     +     K+  +G
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQG 86

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 10/50 (20%), Positives = 16/50 (32%)

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           +    L  G   QA     +AI    K+            + G ++ A E
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE 51

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 3e-09
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G  A   K W  A+  ++        ++    N    Y    +  +AE   T++IN DK
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 530 KNVKAYLRRGTAREMLGYYKEAIE 553
               AY +RG        Y  AI+
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIK 91

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           Q   + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  
Sbjct: 32  QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91

Query: 520 DCTKAINLDKKN----------------VKAYLRRGTAREMLGYYKEAIE 553
           D  +A+   + N                 +              +K+A E
Sbjct: 92  DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
           ++A +   +A    +  + I +    ++          N A  Y +   + +AE     A
Sbjct: 87  DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            ++     K+  R     + +    +   
Sbjct: 147 TSM-----KSEPRHSKIDKAMECVWKQKL 170

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (116), Expect = 6e-07
 Identities = 12/85 (14%), Positives = 26/85 (30%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E    A+      ++  FY   +                     S L++  +  +    +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIE 553
           K  +   +    A + L Y KE ++
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQ 297

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             K                    + + +++    ++   A Y  +  + +L   S L+ E
Sbjct: 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKAINLDKKNVKA 534
           +D++  +A     +AI+LN  N T +  R          L       T  I    KN + 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 535 YLRRGTAREMLGYYKEA 551
           +  R    E L    + 
Sbjct: 115 WHHRRVLVEWLRDPSQE 131

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 1/64 (1%)

Query: 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YY 548
            I  +      Y    A         +A      AI L+  N   +  R    + L    
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 549 KEAI 552
            E +
Sbjct: 95  HEEM 98

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 34/92 (36%), Positives = 49/92 (53%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            K ++L     K Y R+  A E L  ++EA  
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------AI 491
           A KS        + QSA   KE+GN+ +K  +  +AI  Y E                  
Sbjct: 1   AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 60

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           K      +   N A  Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA
Sbjct: 61  KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 120

Query: 552 IE 553
            E
Sbjct: 121 KE 122

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA---------------IKLNGNNATYYSNRAA 506
           + + I KE+G   +K+ ++ +A+  Y +                 K        + N A 
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70

Query: 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
            +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  
Sbjct: 71  CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 117

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 21/140 (15%), Positives = 35/140 (25%), Gaps = 50/140 (35%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA----------------IKLNGNNATYYSNRA 505
             +E  K  GN  +K + W  AI  YT+                  KL     +   N  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 506 A----------------------------------AYLESGSFLQAEADCTKAINLDKKN 531
           A                                   +     + QA AD  KA  +  ++
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 532 VKAYLRRGTAREMLGYYKEA 551
                     ++ +   K+ 
Sbjct: 145 KAIQAELLKVKQKIKAQKDK 164

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFL 515
           +AE + E G  AY +  +     +  +A++          +  +     + A  + G   
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLG 546
           +A     K + LD ++ +A         ++ 
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 8/78 (10%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKNVKAY 535
           L++  +  +A  L  +        A  +    +         K +  D      K V+  
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59

Query: 536 LRRGTAREMLGYYKEAIE 553
           L     +  +   +   +
Sbjct: 60  LWNHAFKNQITTLQGQAK 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 10/107 (9%), Positives = 27/107 (25%), Gaps = 5/107 (4%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511
             + N  N  +S   A            + + +        ++       S       + 
Sbjct: 74  GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133

Query: 512 GSFLQAEADCTKAINLDKKNVKAYL-----RRGTAREMLGYYKEAIE 553
                     + + +   ++   +L      R    +   YY+ A +
Sbjct: 134 THTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ 180

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 1/116 (0%)

Query: 439 ASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
            +LQ++  +A   + L++      + A++  E+G           A + +++A+ +  + 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              ++       ++G+F  A       + LD     A+L RG A    G  K A +
Sbjct: 71  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 126

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAAYLES 511
           A +A     +     ++ +A +    A++++            G +A  ++  A A    
Sbjct: 9   AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 512 G 512
            
Sbjct: 69  R 69

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 9/95 (9%), Positives = 23/95 (24%), Gaps = 5/95 (5%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAE 518
           AE    +   A  D    +A      A++              S         G   ++ 
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           A   +   + +++   +    +  +          
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 14/120 (11%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 441 LQEQADIATKSKL-------STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
           L ++A+               ++++  +++A++  +        K+   A   + +A   
Sbjct: 7   LLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADY 66

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                         Y+E+    ++  +   A++  +  ++ +  RG  R    +  E  E
Sbjct: 67  QKKA-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	554
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.43
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.21
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.18
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.18
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.14
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.11
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.11
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.1
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.09
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.07
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.02
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.99
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.62
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.41
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.41
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.76
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.64
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.71
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.63
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.19
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.08

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.7e-84  Score=679.42  Aligned_cols=403  Identities=22%  Similarity=0.318  Sum_probs=320.8

Q ss_pred             HhhhhhhhhHHHHHH---------Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCC
Q 008755           11 LLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFG   79 (554)
Q Consensus        11 ~~~~~~~~~~~~~~~---------~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~G   79 (554)
                      |+.+.|++++..+|.         ++|  ++||.||||++..++.+++      .+||||||||+|||+|+++|++||+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~------~~gpL~GvPi~vKD~~~~~g~~tt~G   79 (475)
T d2gi3a1           6 FRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------KKGKFWGIPVAIKDNILTLGMRTTCA   79 (475)
T ss_dssp             GGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCSTTTTCEEEEETTBCCSSSCCCTT
T ss_pred             hHHhHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhhh------ccCCCCCCEEEEEcccCCCCCccCcc
Confidence            345556666444442         343  8899999999988776543      46999999999999999999999999


Q ss_pred             ChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCccc
Q 008755           80 HPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS  159 (554)
Q Consensus        80 s~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a  159 (554)
                      |+.+++  +++.+||++|+|||++|||++||||||||+++..+.|.+||+|+||||++++||||||||||+||+|++++|
T Consensus        80 s~~~~~--~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a  157 (475)
T d2gi3a1          80 SRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAA  157 (475)
T ss_dssp             CGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEE
T ss_pred             ChhhcC--CCCCCCcceeeehhhcCCccccccchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceE
Confidence            999986  489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------
Q 008755          160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------  226 (554)
Q Consensus       160 ~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~-------------  226 (554)
                      +|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+             
T Consensus       158 ~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~  237 (475)
T d2gi3a1         158 LGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSE  237 (475)
T ss_dssp             EEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTT
T ss_pred             eecCCCccchhhhHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhhhhccccccccccccccccchh
Confidence            9999999999999999999999999999999999999999999999999999999999987654322             


Q ss_pred             ---CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHH
Q 008755          227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ  301 (554)
Q Consensus       227 ---~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~  301 (554)
                         ..++.++++..+.+.  ...++++.++++++++.|.  |++|++ +++        |.+.+...       .+..+.
T Consensus       238 ~~~~~~~~ri~~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~V~e-v~~--------p~~~~~~~-------~~~~i~  299 (475)
T d2gi3a1         238 IEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYSVA-------TYYVIA  299 (475)
T ss_dssp             TTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHHH-------HHHHHH
T ss_pred             ccccccccceeeeecccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHH-------HHHHHH
Confidence               234567777655432  3357889999999999886  777743 222        33222111       111111


Q ss_pred             HHHHHhhh------------------HHHHhhhCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcC
Q 008755          302 RYEFKNNH------------------NEWIESVKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLK  358 (554)
Q Consensus       302 ~~e~~~~~------------------~~~~~~~~~~~~p~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~  358 (554)
                      ..++...+                  ..+...+...+.+.++.++..+....     ..++.++.+.|..++..+.++|+
T Consensus       300 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (475)
T d2gi3a1         300 PAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLS  379 (475)
T ss_dssp             HHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhhhhcccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11211111                  11112223346677777777665433     33445677888899999999999


Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHH
Q 008755          359 DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY  438 (554)
Q Consensus       359 ~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le  438 (554)
                      ++|+||+||++.++|+++....+...+  ....||.++|++|+|+||||+|+.+|||+|+|+++++++|..|+++++++|
T Consensus       380 ~~D~ll~Pt~~~~a~~~~~~~~~~~~~--~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E  457 (475)
T d2gi3a1         380 QYDAILTPTSPVTAFKIGEIKDPLTYY--LMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIE  457 (475)
T ss_dssp             HSSEEEEESCSSCCCBTTTCCCHHHHH--TTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCCcccccchHHHh--hhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHH
Confidence            999999999999999998754332221  233489999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 008755          439 ASL  441 (554)
Q Consensus       439 ~~l  441 (554)
                      +..
T Consensus       458 ~~~  460 (475)
T d2gi3a1         458 KNS  460 (475)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            764

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=4.8e-82  Score=664.75  Aligned_cols=408  Identities=23%  Similarity=0.283  Sum_probs=328.4

Q ss_pred             hhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCC-------CCCCCCCCCCceeeeccccccCCc
Q 008755           13 GLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGY   74 (554)
Q Consensus        13 ~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~pL~Gvp~~vKD~~~~~g~   74 (554)
                      +.+|+.+++.++     .    ++|  ++|+.+|||++..++.++++|+       +++..||||||||+|||+|+|+|+
T Consensus         8 ~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~   87 (485)
T d2f2aa1           8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGL   87 (485)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTB
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCC
Confidence            455666644443     2    343  7899999999998876666543       367889999999999999999999


Q ss_pred             ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (554)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag  154 (554)
                      +||+||.+|.+  ..+.+|+++|++|+++|||++||||||||+++..+.|.+||+|+||||++++||||||||||+||+|
T Consensus        88 ~tt~Gs~~~~~--~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~g  165 (485)
T d2f2aa1          88 ETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAG  165 (485)
T ss_dssp             CCCTTCGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred             ccCCcChhhcc--CCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHhc
Confidence            99999999987  4788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc--------
Q 008755          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------  226 (554)
Q Consensus       155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~--------  226 (554)
                      ++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+        
T Consensus       166 ~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~  245 (485)
T d2f2aa1         166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD  245 (485)
T ss_dssp             SCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCC
T ss_pred             cCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999987653221        


Q ss_pred             ---------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHH
Q 008755          227 ---------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN  295 (554)
Q Consensus       227 ---------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~  295 (554)
                               ..++.||++..+.+.  ...++++.++++++++.|+  |++|++ .++        |.+.....       
T Consensus       246 ~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~~v~e-v~l--------p~~~~~~~-------  307 (485)
T d2f2aa1         246 VDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFGIP-------  307 (485)
T ss_dssp             CCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHHH-------
T ss_pred             cchhhhhcCCccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchhhhHH-------
Confidence                     234667887765543  3357889999999999886  777643 222        32221111       


Q ss_pred             HHHHHHHHHHHhhh------------------HHH-HhhhCCCCCHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHH
Q 008755          296 VMRLIQRYEFKNNH------------------NEW-IESVKPALDPDISAEIGEM-----LEISETVIENCKSIRNEMRS  351 (554)
Q Consensus       296 ~~~~~~~~e~~~~~------------------~~~-~~~~~~~~~p~~~~~~~~g-----~~~s~~~~~~a~~~r~~~~~  351 (554)
                      .+..+...++...+                  .++ ...+.+.+.+.++.++..+     ..+...++.++++.+..+++
T Consensus       308 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~  387 (485)
T d2f2aa1         308 SYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN  387 (485)
T ss_dssp             HHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            11111111111111                  111 1122345778888777655     34556678899999999999


Q ss_pred             HHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCCCCCceeEEEeccCCcHHHH
Q 008755          352 AISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL  431 (554)
Q Consensus       352 ~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll  431 (554)
                      .++++|+++|+||+||++.+||+++.......... ....||.++|++|+|+||||+|+.+|+|+|+|+++++++|..|+
T Consensus       388 ~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL  466 (485)
T d2f2aa1         388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLY  466 (485)
T ss_dssp             HHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHH
T ss_pred             HHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHh-hhhHHHHHHHHHCCCeEEEECCCCCCCCEeEEEECCCCCHHHHH
Confidence            99999999999999999999999987644332222 22347999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008755          432 DTVQNMYASL  441 (554)
Q Consensus       432 ~~a~~le~~l  441 (554)
                      ++++++|+..
T Consensus       467 ~~A~~~E~~~  476 (485)
T d2f2aa1         467 RVAYQYETQY  476 (485)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhhC
Confidence            9999999653

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8e-82  Score=671.12  Aligned_cols=416  Identities=19%  Similarity=0.214  Sum_probs=329.0

Q ss_pred             chhHHHhhhhhhhhHHHHHH---------Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCc
Q 008755            6 ANLWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY   74 (554)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~   74 (554)
                      .+++.+++.+|+++++.++.         ++|  +.|+.+|||++.+.+++.+.+ ++...||||||||+|||+|+++|+
T Consensus        36 ~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a-~~~~~gpL~GvPi~vKD~~~~~g~  114 (537)
T d1mt5a_          36 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS-QAPRQGLLYGVPVSLKECFSYKGH  114 (537)
T ss_dssp             HHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH-TCCTTSTTTTCEEEEETTSCCBTS
T ss_pred             HHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHH-cCCCCCCcCCCeEEeEcccCcCCC
Confidence            35888999999999776662         243  789999999998877654333 356789999999999999999999


Q ss_pred             ccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcC
Q 008755           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (554)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag  154 (554)
                      +||+||+.+++  .++.+|+++|++||++|||++||||||||+++.+|+|.+||+|+||||++++||||||||||+||+|
T Consensus       115 ~tt~Gs~~~~~--~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag  192 (537)
T d1mt5a_         115 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG  192 (537)
T ss_dssp             BCCSSCGGGSS--CBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSCCCSSSHHHHHHHGGG
T ss_pred             ccCccChhhcC--CCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccccCCCcCCcccccccc
Confidence            99999999986  5889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCccccCC----CCCcccccccCHHHHHHHHHHhcCCCc------
Q 008755          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPF------  224 (554)
Q Consensus       155 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~----s~d~~G~~ar~~~dl~~v~~~l~~~~~------  224 (554)
                      ++|+|+|||||||||+||+||||||||||+||||+.|++|.+.    ++|++|||||+++|+..+++++.+.+.      
T Consensus       193 ~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~l~g~d~~d~~~~  272 (537)
T d1mt5a_         193 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT  272 (537)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHSCTT
T ss_pred             ccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHHHHhcCCCccccccc
Confidence            9999999999999999999999999999999999999988754    569999999999999999998875321      


Q ss_pred             ------c----cCCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhh--
Q 008755          225 ------A----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN--  290 (554)
Q Consensus       225 ------~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~--  290 (554)
                            .    ...++.||++..+..  ...+++++.++++++++.|+  |++|++. .+        |.+.......  
T Consensus       273 ~~~~~~~~~~~~~~k~lRIg~~~~~~--~~~~~p~v~~a~~~a~~~L~~~Ga~Vvev-~~--------~~~~~~~~~~~~  341 (537)
T d1mt5a_         273 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIPF-LP--------NNIPYALEVLSA  341 (537)
T ss_dssp             SCCCCCCHHHHSCCSCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEEC-CC--------TTHHHHHHTTHH
T ss_pred             cCcchhhhhhhhcccccceeeecccc--cccccHHHHHHHhhhHHhhccccceEEec-CC--------cchHHHHHHHHH
Confidence                  0    134566777765432  23468899999999999987  8887542 11        2211100000  


Q ss_pred             ----hh-HHHHHHHHH-------------HHHHHhhhHHHHhhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 008755          291 ----GE-LKNVMRLIQ-------------RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA  352 (554)
Q Consensus       291 ----~~-~~~~~~~~~-------------~~e~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~  352 (554)
                          .+ .......+.             ..+........+......+.+.+...+..+...+..+|.+++..|..+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (537)
T d1mt5a_         342 GGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQS  421 (537)
T ss_dssp             HHHSTTTTHHHHGGGTTCCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence                00 000000000             000000111222233355667777788888889999999999999999999


Q ss_pred             HHhhcC--CCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCC-------------------
Q 008755          353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-------------------  411 (554)
Q Consensus       353 ~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-------------------  411 (554)
                      +.++|+  ++|+||+||++ ++++++.....     .....||.+||++|+|++|||+|+.                   
T Consensus       422 ~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~-----~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~~~~~~~  495 (537)
T d1mt5a_         422 VIAQWKAMNLDVLLTPMLG-PALDLNTPGRA-----TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIW  495 (537)
T ss_dssp             HHHHHHHTTCSEEEEECCC-SCCCSSCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTGGGSCCCSSCSHH
T ss_pred             HHHHHhhcCCCEEEeCCCC-CccCcCChhhh-----hcccchHHHHHHhCCCeEEEEcCccccccccccccccccccccc
Confidence            999996  68999999988 55555543211     1234589999999999999999862                   


Q ss_pred             -----------CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          412 -----------DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       412 -----------~g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                                 +|||+|+|+++++++|+.++++++.+|+.+
T Consensus       496 ~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         496 DIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             HHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                       589999999999999999999999999865

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=6e-81  Score=642.97  Aligned_cols=393  Identities=22%  Similarity=0.273  Sum_probs=330.9

Q ss_pred             hhhhhhhhHHHHH-----H----Hhh--hccCCcCceeeccccCCCCCCCCCCCCCCCCCceeeeccccccCCcccCCCC
Q 008755           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (554)
Q Consensus        12 ~~~~~~~~~~~~~-----~----~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs   80 (554)
                      ++.+|.+++..++     .    ++|  ++|+.+|||++..++      ++++.+||||||||+|||+|+|+|++||+||
T Consensus         3 s~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~------~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (412)
T d1ocka_           3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS------ARAQASGPLRGIAVGIKDIIDTANMPTEMGS   76 (412)
T ss_dssp             CHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT------CCCCSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH------hcCccCCCcCCCEEEEEcccCCCCCcccccC
Confidence            4566666655555     2    343  789999999985322      2356789999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHhcCCCcccc
Q 008755           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (554)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (554)
                      +.|.+  +++.+|+++|+||+++|||++||||||||+++      .+|.++|||++.+++||||||+|++||+|++++|+
T Consensus        77 ~~~~~--~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~  148 (412)
T d1ocka_          77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLAL  148 (412)
T ss_dssp             GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             hhhhC--CCCcceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccccCCCcCCCceeeeecccccccC
Confidence            99986  48899999999999999999999999999976      57889999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhcCCCccc---CCCCceEEEcc
Q 008755          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---QRSPRQIIIAD  237 (554)
Q Consensus       161 GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~~~~~~~---~~~~~~l~i~~  237 (554)
                      |||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+   +....++++..
T Consensus       149 GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~  228 (412)
T d1ocka_         149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (412)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             ccccccccccchhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccccCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999988765433   34455666655


Q ss_pred             chhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCcccccccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHhh
Q 008755          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (554)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  315 (554)
                      ..+.  ...++++.+.++++++.|.  |+++++.         ..+....      .....+..+..++.+..+..++..
T Consensus       229 ~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~e~---------~~~~~~~------~~~~~~~~~~~~e~~~~~~~~~~~  291 (412)
T d1ocka_         229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQAI---------DLPEAVH------EAWRIHPIIQDFEAHRALAWEFSE  291 (412)
T ss_dssp             CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEEC---------CCCHHHH------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccc--ccchhHHHHHHHHHHHHHHHhhhccccc---------cccchhh------hhhhhhhhhhhHHHHHHHHHhhcc
Confidence            4432  3458899999999999986  7666331         1111110      022233344555666677777777


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008755          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (554)
Q Consensus       316 ~~~~~~p~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (554)
                      ..+.+.+.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+|.++|.++......       ..||.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~-------~~~t~~  364 (412)
T d1ocka_         292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGD-------PRYNRL  364 (412)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCC-------CTTTHH
T ss_pred             ccccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCccccccccCC-------hHHhHH
Confidence            7788999999999999999999999999999999999999999999999999999999875432211       237899


Q ss_pred             ccccCCceecccCCCCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008755          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (554)
Q Consensus       396 ~nl~G~PaisvP~g~~~g~p~g~~~~~~~~~d~~ll~~a~~le~~l~  442 (554)
                      +|++|+|+||||+|..+|+|+|+|+++++++|..++++++++|+++.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~alg  411 (412)
T d1ocka_         365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (412)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999889999999999999999999999999998764

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=1.3e-78  Score=640.53  Aligned_cols=404  Identities=23%  Similarity=0.270  Sum_probs=302.1

Q ss_pred             hhHHHhhhhhhhhHHHHHH---------Hhh-----hccCCcCceeeccccCCCCCC-------CCCCCCCCCCCceeee
Q 008755            7 NLWVLLGLGLAGILLMTKK---------LKK-----NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAV   65 (554)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~pL~Gvp~~v   65 (554)
                      +++.+|+.+|+++++.++.         ++|     ++||.||||++.+++ ++++|       ++++.+|||+||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            5667888999988766652         222     557999999997655 54544       2477899999999999


Q ss_pred             ccccccCCcccCCCChhhhhcCCCCCCCHHHHHHHHhCCCeeeeecCccccccccCCC-----CCCCCCCCCCCCCCCCC
Q 008755           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT-----NKHYDTPTNPAAPSQMP  140 (554)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~-----~~~~g~~~NP~~~~~~~  140 (554)
                      ||+|+|+|++||+||+.|.+  . +.+|+++|++|+++|||++||||||||+++.+|+     |++||+|+||||++++|
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~--~-~~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~  158 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQG--F-RPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP  158 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTT--C-CCCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred             EcccccCCCccCCcchhhcc--c-CCccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCC
Confidence            99999999999999999976  2 4579999999999999999999999999988775     99999999999999999


Q ss_pred             CCCChhHHHHHhcCCCccccccCCCCcccccccccCcccccCCCCccccCCccccCCCCCcccccccCHHHHHHHHHHhc
Q 008755          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (554)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPT~G~v~~~G~~p~~~s~d~~G~~ar~~~dl~~v~~~l~  220 (554)
                      |||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.
T Consensus       159 GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~  238 (490)
T d1m22a_         159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA  238 (490)
T ss_dssp             CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc---------------------CCCCceEEEccchhhhcCCChHHHHHHHHHHHHHHc--CCccceeccCccccc
Q 008755          221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFD  277 (554)
Q Consensus       221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~v~  277 (554)
                      +.+..+                     ...+.++.+....+.    .++.+...+.++++.+.  |+++++ +++     
T Consensus       239 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~a~~~l~~~g~~v~e-v~~-----  308 (490)
T d1m22a_         239 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VEL-----  308 (490)
T ss_dssp             CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECC-----
T ss_pred             cccccCcccchhccccccchhhhccccccccccccccccccc----cccchhhhhhhhHHHHhhcccceee-ccC-----
Confidence            654321                     112233333332221    23445666677766665  777643 222     


Q ss_pred             ccCCChhhHhhhhhhHHHHHHHHHHHHHHhhhHHHHh---------------------hhCCCCCHHHHHHHHHhhcCCH
Q 008755          278 SKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLEISE  336 (554)
Q Consensus       278 ~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------------~~~~~~~p~~~~~~~~g~~~s~  336 (554)
                         |.+.....       .+..+...++...+..++.                     .....+.+++............
T Consensus       309 ---p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (490)
T d1m22a_         309 ---PNQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLAD  378 (490)
T ss_dssp             ---TTTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTC
T ss_pred             ---CchHHHHH-------HHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHHHHhhccch
Confidence               22211110       1111112222222222221                     2234455566666555555555


Q ss_pred             HHHHHHHHHHHHHH--HHHHh--hcCCCcEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceecccCCCCC
Q 008755          337 TVIENCKSIRNEMR--SAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD  412 (554)
Q Consensus       337 ~~~~~a~~~r~~~~--~~~~~--~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~  412 (554)
                      ..+..+++.+.++.  ..++.  .|+++|+||+||++.++|........       ...+|.++|++|+|+||||+|+.+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~~-------~~~~t~~~Nl~G~PaisvP~G~~~  451 (490)
T d1m22a_         379 PAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDF-------PGESYSAAAVAGYPSLTVPMGQID  451 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CC-------TTCCHHHHHHHTCCEEEEEEEEET
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCcccccc-------hHHHHHHHHHhCCCEEEEECCCCC
Confidence            55555544333322  23333  46899999999999887765432111       124678899999999999999999


Q ss_pred             CCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008755          413 KCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (554)
Q Consensus       413 g~p~g~~~~~~~~~d~~ll~~a~~le~~l  441 (554)
                      |||+|+|+++++++|..|+++++++|++.
T Consensus       452 GLPvGlQlig~~~~D~~LL~~A~~lE~~~  480 (490)
T d1m22a_         452 GLPVGLLFMGTAWSEPKLIEMAYAYEQRT  480 (490)
T ss_dssp             TEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             CCceeEEEECCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.2e-15  Score=121.85  Aligned_cols=90  Identities=38%  Similarity=0.513  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      +..+.+.|+.+++.|+|++|+..|+++|+.+|+++.+|+++|.+|+++|+|++|+.+|+++++++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      .+|++++|+.
T Consensus        83 ~~~~~~~A~~   92 (117)
T d1elwa_          83 FLNRFEEAKR   92 (117)
T ss_dssp             HTTCHHHHHH
T ss_pred             HccCHHHHHH
Confidence            9999999975

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=7.3e-15  Score=132.53  Aligned_cols=91  Identities=38%  Similarity=0.519  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ++..+.+.|+.+++.|+|++|+..|+++|+++|+++.+|+++|.||+++|+|++|+.+|++|++++|++..+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|+.
T Consensus        83 ~~l~~~~~A~~   93 (201)
T d2c2la1          83 LEMESYDEAIA   93 (201)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999999975

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=125.38  Aligned_cols=92  Identities=42%  Similarity=0.674  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      +.++.+..+|+.+++.|+|++|+.+|+++++++|++..+|+++|.+|+.+|++++|+.+|+++++++|++..+++++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHhc
Q 008755          542 REMLGYYKEAIE  553 (554)
Q Consensus       542 ~~~~~~~~~A~~  553 (554)
                      +..+|++++|++
T Consensus        88 ~~~~g~~~eA~~   99 (159)
T d1a17a_          88 NMALGKFRAALR   99 (159)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.50  E-value=6.8e-14  Score=113.42  Aligned_cols=90  Identities=13%  Similarity=0.008  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...++++|..+++.|++++|+..|+++++.+|+++.+|.++|.++.+++++++|+.+++++++++|++..+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      .+|++++|++
T Consensus        96 ~~g~~~~A~~  105 (112)
T d1hxia_          96 NEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HCCCHHHHHH
Confidence            9999999975

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=114.01  Aligned_cols=92  Identities=39%  Similarity=0.577  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KA  534 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~~  534 (554)
                      +.+..+.++|+.++..|+|++|+.+|+++|+++|++..+++++|.+|+++|+|++|+.+|+++++++|++.       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999998774       46


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+++|.++..++++++|++
T Consensus        82 ~~~lg~~~~~~~~~~~A~~  100 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIH  100 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHH
Confidence            7778888888899998875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.6e-13  Score=126.21  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+..+..++.+|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|.++|++++|+..|+++++++|++..+++++|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHhc
Q 008755          540 TAREMLGYYKEAIE  553 (554)
Q Consensus       540 ~~~~~~~~~~~A~~  553 (554)
                      .++..+|++++|++
T Consensus       113 ~~~~~~g~~~~A~~  126 (259)
T d1xnfa_         113 IALYYGGRDKLAQD  126 (259)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.43  E-value=3.2e-13  Score=116.03  Aligned_cols=101  Identities=30%  Similarity=0.368  Sum_probs=86.9

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------ATYYSNRAAAYLESGSFLQ  516 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~a~~~~~~~~~~~  516 (554)
                      +.....+..+.+..+...|+.+|+.|+|++|+..|+++|+..+..                ..+|+|+|.||+++++|++
T Consensus         6 ~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~   85 (153)
T d2fbna1           6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK   85 (153)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccch
Confidence            344444455677889999999999999999999999999875532                2478899999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       517 A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |+.+|+++|+++|++.++|+++|.+|..+|++++|+.
T Consensus        86 Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~  122 (153)
T d2fbna1          86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE  122 (153)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999975

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.7e-13  Score=117.59  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----------  531 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----------  531 (554)
                      .++..|+++|.+++..|+|++|+.+|++||+++|+++.+|+++|.+|.++|+|++|+.+|+++++..+.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            4567899999999999999999999999999999999999999999999999999999999999876643          


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 ------VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 ------~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                            .++++++|.++..++++++|++
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence                  5789999999999999999975

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.6e-13  Score=116.24  Aligned_cols=93  Identities=26%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      .+.+..+.+.|+.+++.|+|++|+..|+++|+..|..               ..+|.++|.||+++++|++|+.+++++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3456778888888888889999988888888886653               3567888888888888899998888888


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          526 NLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       526 ~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++|+++.+++++|.+|..+|++++|+.
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~  117 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARA  117 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHH
Confidence            8888888888888888888888888875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.39  E-value=1e-12  Score=114.73  Aligned_cols=100  Identities=27%  Similarity=0.409  Sum_probs=82.6

Q ss_pred             ccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHH
Q 008755          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAE  518 (554)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~  518 (554)
                      .+...+..+.+..+.+.|+.+++.|+|++|+..|++||...+..               ..+|.|+|.||+++++|++|+
T Consensus         5 ~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai   84 (168)
T d1kt1a1           5 EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV   84 (168)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccch
Confidence            33444445667888889999999999999999999998764432               346788999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       519 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+|+++++++|++..+++++|.+|..+|++++|++
T Consensus        85 ~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~  119 (168)
T d1kt1a1          85 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG  119 (168)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999998875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-12  Score=101.28  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ++.++++|..+++.|+|++|+..|++|+++.|.+       ..+++++|.+|+++|+|++|+..|+++|+++|++..+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678999999999999999999999999986653       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 008755          537 RRGTAREMLG  546 (554)
Q Consensus       537 ~~g~~~~~~~  546 (554)
                      +++.....++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9988766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=105.83  Aligned_cols=94  Identities=14%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             hhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      +...+...+..+|.++..|..+|.++++.|++++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++
T Consensus        22 Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          22 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            33444555566789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 008755          529 KKNVKAYLRRGTAR  542 (554)
Q Consensus       529 p~~~~~~~~~g~~~  542 (554)
                      |++..++..++.+.
T Consensus       102 p~~~~~~~~l~~l~  115 (117)
T d1elwa_         102 ANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=7.8e-12  Score=109.16  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=88.8

Q ss_pred             ccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~  537 (554)
                      ..+|.....+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHh
Q 008755          538 RGTAREMLGYYKEAI  552 (554)
Q Consensus       538 ~g~~~~~~~~~~~A~  552 (554)
                      ++.+...+..+.++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988887776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.7e-12  Score=108.00  Aligned_cols=107  Identities=17%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             HHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ...+...+...+..+|+++..|+++|.+++..|++++|+..|+++|+++|++..+|.++|.++..+|+|++|+.++++++
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33344455566667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHH--HcCCHHHHh
Q 008755          526 NLDKKNVKAYLRRGTARE--MLGYYKEAI  552 (554)
Q Consensus       526 ~l~p~~~~~~~~~g~~~~--~~~~~~~A~  552 (554)
                      +++|++..++..++.+..  ..+.+++|+
T Consensus       106 ~~~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_         106 KVKPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988877754  344465554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.3e-12  Score=112.16  Aligned_cols=87  Identities=25%  Similarity=0.287  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      +..++++|..++..|+|++|+..|+++   .+.++.+|+++|.+|+.+|+|++|+.+|++|++++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            445667899999999999999999874   66788999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHhc
Q 008755          544 MLGYYKEAIE  553 (554)
Q Consensus       544 ~~~~~~~A~~  553 (554)
                      ++|++++|++
T Consensus        82 ~~g~~~~A~~   91 (192)
T d1hh8a_          82 QTEKYDLAIK   91 (192)
T ss_dssp             HTTCHHHHHH
T ss_pred             hhccHHHHHH
Confidence            9999999975

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=5.5e-12  Score=110.15  Aligned_cols=92  Identities=27%  Similarity=0.386  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----------------NGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      ..+..+...|+.++..|+|++|+..|+++|+.                +|.+..+|.++|.||.++++|++|+.+|+++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34556788899999999999999999999864                45667789999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          526 NLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       526 ~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      +++|++..+|+++|.+|..+|++++|++
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~  132 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALA  132 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHH
Confidence            9999999999999999999999999975

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-11  Score=119.82  Aligned_cols=104  Identities=11%  Similarity=0.003  Sum_probs=94.5

Q ss_pred             hcccccccccChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008755          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (554)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~  528 (554)
                      .......+..+|++..+|+.+|.++...+ ++++|+..|+++++++|++..+|+++|.++..+|++++|+.+++++++++
T Consensus        63 l~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d  142 (315)
T d2h6fa1          63 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD  142 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh
Confidence            34455566778899999999999998876 59999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          529 KKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       529 p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      |++..+|+++|.++..++++++|++
T Consensus       143 p~n~~a~~~~~~~~~~~~~~~~Al~  167 (315)
T d2h6fa1         143 AKNYHAWQHRQWVIQEFKLWDNELQ  167 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             hcchHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999998875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-11  Score=100.16  Aligned_cols=94  Identities=11%  Similarity=0.020  Sum_probs=80.5

Q ss_pred             cccccccChhhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      +......+|.++.+++++|.++++.   +++++|+..|+++++.+|++  ..+++++|.+|+++|+|++|+.+|+++|++
T Consensus        22 Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          22 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3344455678999999999999864   46668999999999998765  458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 008755          528 DKKNVKAYLRRGTAREMLG  546 (554)
Q Consensus       528 ~p~~~~~~~~~g~~~~~~~  546 (554)
                      +|++.++...++.+..+++
T Consensus       102 ~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_         102 EPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHc
Confidence            9999999999988876553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=7.1e-11  Score=99.93  Aligned_cols=110  Identities=14%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccChhhHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008755          434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSN  503 (554)
Q Consensus       434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~  503 (554)
                      ...+++++...+...         ..+|+++++++.+|.++...          +++++|+..|+++|+++|++..+|++
T Consensus        10 ~~~fe~A~~~~e~al---------~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~   80 (145)
T d1zu2a1          10 ILLFEQIRQDAENTY---------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC   80 (145)
T ss_dssp             HHHHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HccHHHHHHHHHHHH---------hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence            334555555544443         34569999999999999854          55689999999999999999999999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHh
Q 008755          504 RAAAYLESG-----------SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (554)
Q Consensus       504 ~a~~~~~~~-----------~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~  552 (554)
                      +|.+|..++           +|++|+++|+++++++|++..++..++.+....+.+.++.
T Consensus        81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998765           4799999999999999999999999999988877777764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.6e-10  Score=109.97  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ++..+..+|..+...|++++|+..|+++++.+|+++.+|.++|.+|..+|++++|++.|+++++++|+++.+++++|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus       251 ~~~g~~~~A~~  261 (323)
T d1fcha_         251 INLGAHREAVE  261 (323)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            99999999975

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.16  E-value=8e-11  Score=100.67  Aligned_cols=85  Identities=19%  Similarity=0.146  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....+.++|.++++.|+|++|+..|+++|+++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHcCC
Q 008755          543 EMLGY  547 (554)
Q Consensus       543 ~~~~~  547 (554)
                      .++++
T Consensus       146 ~kl~~  150 (153)
T d2fbna1         146 NKLKE  150 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-10  Score=100.94  Aligned_cols=87  Identities=22%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~  543 (554)
                      ...+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...++.++.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HcCCHHH
Q 008755          544 MLGYYKE  550 (554)
Q Consensus       544 ~~~~~~~  550 (554)
                      .+++..+
T Consensus       142 ~~~~~~~  148 (170)
T d1p5qa1         142 RIRRQLA  148 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.14  E-value=6.9e-11  Score=101.46  Aligned_cols=90  Identities=21%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-  530 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-  530 (554)
                      +..++..|+.++..|+|++|+..|+++|+++|+.            ..+|+++|.+|..+|+|++|+.++++++++.|+ 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3344455889999999999999999999998874            468999999999999999999999999988542 


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 ----------NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ----------~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                                ...+++++|.+|..+|++++|++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence                      34578999999999999999985

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.9e-11  Score=112.97  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAY  535 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~  535 (554)
                      +.-+|+..+++..+|.++.+.+++++|+.+|+++|+++|++..+|+++|.++..++ ++++|+.+++++++++|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            34468889999999999999999999999999999999999999999999999987 49999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHhc
Q 008755          536 LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       536 ~~~g~~~~~~~~~~~A~~  553 (554)
                      +++|.++..+|++++|++
T Consensus       116 ~~~~~~~~~l~~~~eAl~  133 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELE  133 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHH
T ss_pred             HHHhHHHHhhccHHHHHH
Confidence            999999999999999975

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=2.3e-10  Score=99.46  Aligned_cols=88  Identities=19%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....+.++|.++++.|+|++|+..|+++|+++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHcCCHHH
Q 008755          543 EMLGYYKE  550 (554)
Q Consensus       543 ~~~~~~~~  550 (554)
                      ..++++.+
T Consensus       143 ~~~~~~~e  150 (168)
T d1kt1a1         143 KKAKEHNE  150 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhHHH
Confidence            77766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-10  Score=114.76  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=80.3

Q ss_pred             cccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008755          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (554)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~  536 (554)
                      ....|.+...+..+|..+.+.|++++|+..|+++++++|+++.+++++|.+|.++|++++|+..|+++++++|++..+++
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  377 (388)
T d1w3ba_         298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44456778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 008755          537 RRGTAREMLGY  547 (554)
Q Consensus       537 ~~g~~~~~~~~  547 (554)
                      ++|.+|.++|+
T Consensus       378 ~lg~~~~~~~D  388 (388)
T d1w3ba_         378 NMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHcCC
Confidence            99999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-10  Score=110.58  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      +....+++|..+++.|++++|+..|+++|+.+|+++.+|.++|.+|..+|++++|+..++++++++|++...++.+|.+|
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            34446889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus        98 ~~~~~~~~A~~  108 (323)
T d1fcha_          98 TNESLQRQACE  108 (323)
T ss_dssp             HHTTCHHHHHH
T ss_pred             ccccccccccc
Confidence            99999999874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6e-11  Score=96.91  Aligned_cols=86  Identities=9%  Similarity=-0.009  Sum_probs=77.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHH
Q 008755          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKN--VKAYLRRGTAR  542 (554)
Q Consensus       468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~--~~~~~~~g~~~  542 (554)
                      .++.+.+...+++++|++.|+++|.++|+++.+++++|.++.+.+   ++++|+..|+++++.+|.+  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            457788999999999999999999999999999999999998744   5678999999999998765  45899999999


Q ss_pred             HHcCCHHHHhc
Q 008755          543 EMLGYYKEAIE  553 (554)
Q Consensus       543 ~~~~~~~~A~~  553 (554)
                      ..+|++++|++
T Consensus        83 ~~~g~~~~A~~   93 (122)
T d1nzna_          83 YRLKEYEKALK   93 (122)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHHhhhHHHHH
Confidence            99999999975

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2e-11  Score=109.43  Aligned_cols=82  Identities=18%  Similarity=0.083  Sum_probs=74.5

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~  530 (554)
                      ..+...+..+|.++..|+++|.+|++.|+|++|+..|++||+++|++..+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus        25 ~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          25 ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34444455678899999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             CH
Q 008755          531 NV  532 (554)
Q Consensus       531 ~~  532 (554)
                      +.
T Consensus       105 ~~  106 (201)
T d2c2la1         105 QR  106 (201)
T ss_dssp             TT
T ss_pred             cH
Confidence            43

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.8e-10  Score=113.06  Aligned_cols=86  Identities=17%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008755          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (554)
Q Consensus       468 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~  547 (554)
                      +++|+.+++.|+|++|+..|+++++.+|+++.++..+|.+|+++|+|++|+..|+++++++|++..+++.+|.+|..+|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 008755          548 YKEAIE  553 (554)
Q Consensus       548 ~~~A~~  553 (554)
                      +++|++
T Consensus        83 ~~~A~~   88 (388)
T d1w3ba_          83 LQEAIE   88 (388)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            998864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=2e-10  Score=97.01  Aligned_cols=75  Identities=16%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----------GSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       473 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +++++|+..|+++++++|++..+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            345667899999999999999999999999999999854          4568999999999999999999999999999


Q ss_pred             HHcCC
Q 008755          543 EMLGY  547 (554)
Q Consensus       543 ~~~~~  547 (554)
                      ..+|+
T Consensus        86 ~~~g~   90 (145)
T d1zu2a1          86 TSFAF   90 (145)
T ss_dssp             HHHHH
T ss_pred             HHccc
Confidence            88764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.6e-09  Score=100.55  Aligned_cols=98  Identities=15%  Similarity=0.021  Sum_probs=88.5

Q ss_pred             cccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008755          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (554)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (554)
                      +...+..+|+++.+|+.+|.++.+.|++++|+..|+++++++|++..++.++|.+|..+|++++|+..++++++++|++.
T Consensus        60 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_          60 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            34445556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHH
Q 008755          533 KAYLRRGTAREMLGYYKE  550 (554)
Q Consensus       533 ~~~~~~g~~~~~~~~~~~  550 (554)
                      .....++.++...+..+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~  157 (259)
T d1xnfa_         140 FRSLWLYLAEQKLDEKQA  157 (259)
T ss_dssp             HHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHH
Confidence            998888888877765443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=1.6e-09  Score=86.88  Aligned_cols=74  Identities=12%  Similarity=-0.018  Sum_probs=68.1

Q ss_pred             ccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008755          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (554)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  525 (554)
                      .+...+..+|+++.+|+.+|.++.+.+++++|+.+|+++++++|++..+|.++|.+|..+|++++|++.+++.|
T Consensus        38 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          38 AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            34444556788999999999999999999999999999999999999999999999999999999999999976

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=9.3e-09  Score=89.72  Aligned_cols=93  Identities=13%  Similarity=-0.002  Sum_probs=85.6

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHcCCHHHHH
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAE  518 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~  518 (554)
                      -...+.++..|..+...|++++|+..|.+||++.+..                      ..++.+++.++..+|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3567889999999999999999999999999986543                      257899999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       519 ~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      .+++++++++|.+..+|.+++.+|..+|++++|++
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999999974

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.62  E-value=3.7e-08  Score=91.43  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=72.1

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008755          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  550 (554)
Q Consensus       471 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~~~~~~~~~  550 (554)
                      +..++++|++++|+..|+++|+.+|++..++.+++.+|...|+|++|++.|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45677889999999999999999999999999999999999999999999999999999999998888888877777666


Q ss_pred             Hh
Q 008755          551 AI  552 (554)
Q Consensus       551 A~  552 (554)
                      +.
T Consensus        83 a~   84 (264)
T d1zbpa1          83 FA   84 (264)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-07  Score=77.60  Aligned_cols=85  Identities=9%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             cccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008755          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (554)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~l  527 (554)
                      ..+..+|+++..++++|.++++.|+|++|+..|+++|+++|++.       .+|.++|.++..+++|++|+.+|++++..
T Consensus        29 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          29 KAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            33445678899999999999999999999999999999998764       46778888999999999999999999999


Q ss_pred             CCCCHHHHHHHHH
Q 008755          528 DKKNVKAYLRRGT  540 (554)
Q Consensus       528 ~p~~~~~~~~~g~  540 (554)
                      +++ ......+..
T Consensus       109 ~~~-~~~~~~l~~  120 (128)
T d1elra_         109 HRT-PDVLKKCQQ  120 (128)
T ss_dssp             CCC-HHHHHHHHH
T ss_pred             CCC-HHHHHHHHH
Confidence            875 555544433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=7.9e-08  Score=92.77  Aligned_cols=96  Identities=10%  Similarity=0.008  Sum_probs=87.0

Q ss_pred             ccChhhHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008755          458 FNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (554)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~  534 (554)
                      ..+|++...|+.+|..+...+  ++++|+..++++++.+|++..++ ..++.++...+++++|+..++++++++|++..+
T Consensus       101 ~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a  180 (334)
T d1dcea1         101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence            346789999999999887766  48999999999999999998886 567889989999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHhc
Q 008755          535 YLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       535 ~~~~g~~~~~~~~~~~A~~  553 (554)
                      ++++|.++..+|++++|+.
T Consensus       181 ~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         181 WHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             HHHHHHHHHHHSCCCCSSS
T ss_pred             HHHHHHHHHHhcCHHHHHH
Confidence            9999999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.3e-07  Score=94.66  Aligned_cols=86  Identities=19%  Similarity=0.048  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ....+..+|..+...++|++|+.+|++|++++|++..+|+++|.+|...|++.+|+.+|.+|+.++|.++.++.+++.++
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCH
Q 008755          543 EMLGYY  548 (554)
Q Consensus       543 ~~~~~~  548 (554)
                      .+..+.
T Consensus       231 ~~~~~~  236 (497)
T d1ya0a1         231 SKALES  236 (497)
T ss_dssp             HHHTTS
T ss_pred             HHhhhh
Confidence            776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=96.35  Aligned_cols=93  Identities=12%  Similarity=-0.051  Sum_probs=61.5

Q ss_pred             cChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      ..+++...+.++|..+.+.+++++|+..|+++++.++.  .++.++|.++..+++|++|+.+|++|++++|++..+|+++
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            34678889999999999999999999999999998874  6889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHhc
Q 008755          539 GTAREMLGYYKEAIE  553 (554)
Q Consensus       539 g~~~~~~~~~~~A~~  553 (554)
                      |.++...|++.+|+.
T Consensus       193 g~~~~~~~~~~~A~~  207 (497)
T d1ya0a1         193 AILASSKGDHLTTIF  207 (497)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999999874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.41  E-value=4.9e-07  Score=76.66  Aligned_cols=70  Identities=13%  Similarity=-0.005  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-----------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p  529 (554)
                      +..+..|.++|.++.+.|+|++|+..|+++|++.|.           ...+++++|.+|.++|++++|+.+|++++++.|
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            345788999999999999999999999999987542           245789999999999999999999999999976


Q ss_pred             C
Q 008755          530 K  530 (554)
Q Consensus       530 ~  530 (554)
                      +
T Consensus       132 ~  132 (156)
T d2hr2a1         132 E  132 (156)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=9.4e-07  Score=70.00  Aligned_cols=81  Identities=7%  Similarity=0.005  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (554)
Q Consensus       464 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~g  539 (554)
                      .+..|+.|..+.+.   .+.++++..++++++.+|.+ .++++++|..|+++|+|++|..+++++|+++|+|.++...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            56788888888865   45678999999999999876 489999999999999999999999999999999999987766


Q ss_pred             HHHHH
Q 008755          540 TAREM  544 (554)
Q Consensus       540 ~~~~~  544 (554)
                      .+..+
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=8.2e-07  Score=83.65  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC---
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK---  530 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~---  530 (554)
                      +..+..+.+.|++|.+.|++++|+.+|++++++.+..      ..++.++|.+|.. +++|++|+..|++++++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4567889999999999999999999999999986654      5678899988865 69999999999999988542   


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 ---NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ---~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                         ...++.++|.++..+|+|++|+.
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHH
Confidence               24568899999999999999975

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=2.6e-06  Score=81.71  Aligned_cols=103  Identities=12%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             cccccccccChhhHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHH
Q 008755          451 SKLSTNTFNQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAE  518 (554)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~  518 (554)
                      .........+|++..+|+.++..+...          +++++|+..|+++++.+|++..+|+++|.++..+++  +++|+
T Consensus        50 ~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~  129 (334)
T d1dcea1          50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  129 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHH
Confidence            334445667889999988887775543          458999999999999999999999999999988875  89999


Q ss_pred             HHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHHHhc
Q 008755          519 ADCTKAINLDKKNVKAY-LRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       519 ~~~~~al~l~p~~~~~~-~~~g~~~~~~~~~~~A~~  553 (554)
                      ..++++++++|++..++ +..|.++...+++++|++
T Consensus       130 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1         130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence            99999999999999986 467889999999999874

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=1.3e-06  Score=82.22  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=80.0

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (554)
                      .+-++.|...|+.|...++|++|+.+|++++++.      +.....|.++|.||.+++++++|+..|++++++.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            3456789999999999999999999999999873      2335689999999999999999999999999987655   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHhc
Q 008755          532 ---VKAYLRRGTAREM-LGYYKEAIE  553 (554)
Q Consensus       532 ---~~~~~~~g~~~~~-~~~~~~A~~  553 (554)
                         ..++.++|.++.. .+++++|++
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~  139 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAID  139 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHH
Confidence               5678889988865 699999974

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.22  E-value=1e-07  Score=88.39  Aligned_cols=110  Identities=11%  Similarity=-0.064  Sum_probs=90.4

Q ss_pred             HHHHhhhcccccccccChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008755          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (554)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  523 (554)
                      .....+...+...+..+|+++..+..+|..++..|++++|+..|+++++++|++..++..++.++...+..+++...+.+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            33334444455556678899999999999999999999999999999999999999999999998888888877776655


Q ss_pred             HHH-cCCCCHHHHHHHHHHHHHcCCHHHHhc
Q 008755          524 AIN-LDKKNVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       524 al~-l~p~~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ... .+|+....++..+.++...|++++|++
T Consensus        90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~  120 (264)
T d1zbpa1          90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSE  120 (264)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhcccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence            333 356677788889999999999999864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=2.6e-06  Score=81.32  Aligned_cols=93  Identities=13%  Similarity=0.053  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  531 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----  531 (554)
                      +-.++....++.+++..|++++|+..|+++++..|++     ..++..+|.+|+.+|++++|+..|++++++.+..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            3456778888999999999999999999999999986     3588999999999999999999999999986532    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHhc
Q 008755          532 --VKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       532 --~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                        ..++++++.++...+++..|..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~  112 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWE  112 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4567889999999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.7e-06  Score=63.77  Aligned_cols=52  Identities=10%  Similarity=0.031  Sum_probs=46.8

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES  511 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~  511 (554)
                      .+..++++.++|.++++.|++++|+..|+++|+++|++..+++|++.+...+
T Consensus        42 ~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          42 TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            3467889999999999999999999999999999999999999998766544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=9.2e-06  Score=70.12  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHcCCC
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------INLDKK  530 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------l~l~p~  530 (554)
                      ....++.+++..+...|+|++|+.+++++++++|.+..+|.+++.+|..+|++.+|++.|+++       +-++|.
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            456789999999999999999999999999999999999999999999999999999999998       446675

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=3.1e-05  Score=73.41  Aligned_cols=93  Identities=15%  Similarity=-0.039  Sum_probs=78.7

Q ss_pred             hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008755          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  530 (554)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~  530 (554)
                      +.....+...+..+...+++++|...|+++++..+.+    ...+.++|.+|..+|++++|+..+++++..      .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            4566778888999999999999999999999887654    456788999999999999999999999854      455


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHhc
Q 008755          531 NVKAYLRRGTAREMLGYYKEAIE  553 (554)
Q Consensus       531 ~~~~~~~~g~~~~~~~~~~~A~~  553 (554)
                      ...+++.+|.+|..+|++++|++
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~  312 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQR  312 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHH
Confidence            67789999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=0.00024  Score=64.83  Aligned_cols=78  Identities=18%  Similarity=0.229  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      |+++++.+|..+++++++++|+.+|+++.+.  ++..+++++|.+|+.    .+++.+|..+++++.+..  ++.+.+.+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            4678999999999999999999999999876  588999999999998    678999999999988754  78888888


Q ss_pred             HHHHHH
Q 008755          539 GTAREM  544 (554)
Q Consensus       539 g~~~~~  544 (554)
                      |..+..
T Consensus        77 ~~~~~~   82 (265)
T d1ouva_          77 GNLYYS   82 (265)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            888765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00073  Score=63.18  Aligned_cols=89  Identities=9%  Similarity=-0.150  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008755          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (554)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~~  542 (554)
                      ...|...++...+.+++++|...|+++++..|.....|...+..... .++.+.|...|+++++.+|++...+..++..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34677778888888888888888888888888888888777776544 46788888888888888888888888888888


Q ss_pred             HHcCCHHHHh
Q 008755          543 EMLGYYKEAI  552 (554)
Q Consensus       543 ~~~~~~~~A~  552 (554)
                      ...|+++.|.
T Consensus       214 ~~~g~~~~aR  223 (308)
T d2onda1         214 SHLNEDNNTR  223 (308)
T ss_dssp             HTTCCHHHHH
T ss_pred             HHcCChHHHH
Confidence            8888877764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.0012  Score=61.63  Aligned_cols=93  Identities=10%  Similarity=0.015  Sum_probs=82.0

Q ss_pred             ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008755          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (554)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~  538 (554)
                      .|.+...|...+......|++++|...|+++|+..|.+. .+|...+......+++++|.+.|+++++..|.+...+...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            467778899999999999999999999999999999764 5789999999999999999999999999999999999988


Q ss_pred             HHHHHH-cCCHHHHh
Q 008755          539 GTAREM-LGYYKEAI  552 (554)
Q Consensus       539 g~~~~~-~~~~~~A~  552 (554)
                      +..... .++.+.|.
T Consensus       175 a~~e~~~~~~~~~a~  189 (308)
T d2onda1         175 ALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHHHHHTSCCHHHHH
T ss_pred             HHHHHHhccCHHHHH
Confidence            877544 56777664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.80  E-value=0.0053  Score=49.10  Aligned_cols=81  Identities=16%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008755          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (554)
Q Consensus       466 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~g~~  541 (554)
                      .++.++.  ....++++|+..|+++.+.  +++.+.+++|..|+.    ..++++|+.+|+++.+.  .++.+.+++|.+
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~  100 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  100 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHH
Confidence            3444443  3456888888888888765  578888888888875    45788899999988875  468888888888


Q ss_pred             HHH----cCCHHHHh
Q 008755          542 REM----LGYYKEAI  552 (554)
Q Consensus       542 ~~~----~~~~~~A~  552 (554)
                      |..    ..++++|+
T Consensus       101 y~~G~gv~~d~~~A~  115 (133)
T d1klxa_         101 QYAGKGVVKNEKQAV  115 (133)
T ss_dssp             HHHTSSSCCCHHHHH
T ss_pred             HHcCCccCCCHHHHH
Confidence            876    34566664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.0025  Score=49.81  Aligned_cols=46  Identities=13%  Similarity=0.010  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008755          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  508 (554)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  508 (554)
                      .-+.++.+|..+++.|+|++|+.+++++|+++|++..+...+-.+.
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            3578999999999999999999999999999999988876654443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.63  E-value=0.0057  Score=55.18  Aligned_cols=64  Identities=22%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 008755          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLD  528 (554)
Q Consensus       463 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~  528 (554)
                      ++.+++++|..+..    ..++++|+..|+++.+.  +++.+++++|.+|..    .+++++|+.+|++|.++.
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            34444444444443    33445555555554444  234444445544443    224444555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.19  E-value=0.013  Score=46.64  Aligned_cols=66  Identities=21%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 008755          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK  529 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p  529 (554)
                      .++.+++.+|..++.    ..++++|+.+|+++.+.  .++.+.+++|.+|+.    .+++++|+.+|++|.++..
T Consensus        53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            467788999999887    57899999999999876  578999999999987    5689999999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.08  E-value=1.4  Score=30.43  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008755          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (554)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  492 (554)
                      +.+-.+-.++..+.+.|+|++||+++++|..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4466677788999999999999999988764