Citrus Sinensis ID: 009317

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccHHHHHHHHHcccHHHcccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccc
ccEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccEEEEEEccccccccccccccccccEEEEccccEcccccEcccccccccHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccHccccccHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccc
mgaiklelrcpqkvdgiaidpepdwSFDALLSELNSLETrlnasskpvpftktksreistgksvesNARAFVIRVsddelendnerkgeevhngsLVAVKRFTCDalylsesddsdddvalggesylmdevglADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivfseaaFESEEAYYKTIGyreedgkiESLENYLSRLKSYMRLYAALIQCMTKnacfgrrkfRVSRTHMA
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLEtrlnasskpvpftktksreistgksvesnarafvirvsddelendnerkgeevhngslvavKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIgyreedgkieSLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEsddsdddVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVKAEAEMQaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVfseaafeseeaYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
*******LRCPQKVDGIAIDPEPDWSFDALL**************************************************************GSLVAVKRFTCDALYLS********VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLET********************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFR*******
********RCPQKVD*IAIDPEPDWSFDALL************************************************************************************************************************************************************************************************************************************************************************************************************SAVRATESALNIEQKRLQK***********************************************VKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFES*EAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS******************VESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEMQAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
*GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNAS**PVP**********TGKSVESNARAFVIRVSD************EVHNGSLVAVKRFTCDALYLSES*DSDD*VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRS***YEE**RKERALQEE**RQEKVK*******************************************************************GSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSR****
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MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQCMTKNACFGRRKFRVSRTHMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
Q5RAS2698 Nucleoporin GLE1 OS=Pongo yes no 0.147 0.113 0.376 2e-10
Q53GS7698 Nucleoporin GLE1 OS=Homo yes no 0.148 0.114 0.372 2e-10
Q8R322699 Nucleoporin GLE1 OS=Mus m yes no 0.199 0.153 0.333 2e-10
Q6DRB1695 Nucleoporin GLE1 OS=Danio yes no 0.201 0.155 0.313 2e-10
Q4KLN4698 Nucleoporin GLE1 OS=Rattu no no 0.148 0.114 0.372 4e-10
Q3ZBK7698 Nucleoporin GLE1 OS=Bos t yes no 0.148 0.114 0.360 2e-09
Q9V4W1677 Nucleoporin GLE1 OS=Droso no no 0.253 0.200 0.277 3e-05
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1 Back     alignment and function desciption
 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 6/85 (7%)

Query: 436 YVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED 491
           + I +VAS +    P+V D++L   H+ C Y+VP +  F E    + E Y + +GY+ +D
Sbjct: 500 FPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVKD 557

Query: 492 GKIESLENYLSRLKSYMRLYAALIQ 516
            K+E  +N+L R+   +RLYAA+IQ
Sbjct: 558 SKVEQQDNFLKRMSGMIRLYAAIIQ 582
Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC).
Pongo abelii (taxid: 9601)
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2 Back     alignment and function description
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1 Back     alignment and function description
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
296081385 701 unnamed protein product [Vitis vinifera] 0.945 0.724 0.609 1e-166
359473158 680 PREDICTED: uncharacterized protein LOC10 0.945 0.747 0.610 1e-160
147859341 745 hypothetical protein VITISV_036820 [Viti 0.953 0.687 0.575 1e-154
255547998613 Nucleoporin GLE1, putative [Ricinus comm 0.901 0.789 0.590 1e-145
356538127629 PREDICTED: uncharacterized protein LOC10 0.890 0.759 0.513 1e-126
449435436 641 PREDICTED: uncharacterized protein LOC10 0.927 0.776 0.527 1e-120
15222184611 embryo defective 1745 protein [Arabidops 0.867 0.762 0.481 1e-113
357463209599 Nucleoporin GLE1 [Medicago truncatula] g 0.832 0.746 0.484 1e-111
297849694614 EMB1745 [Arabidopsis lyrata subsp. lyrat 0.865 0.757 0.478 1e-111
4850395635 EST gb|N37870 comes from this gene [Arab 0.878 0.743 0.469 1e-110
>gi|296081385|emb|CBI16818.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 322/528 (60%), Positives = 395/528 (74%), Gaps = 20/528 (3%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 40  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 99

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSD 116
           S   +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSD
Sbjct: 100 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSD 152

Query: 117 DDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176
           D+  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ 
Sbjct: 153 DESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIV 212

Query: 177 QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
           +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA 
Sbjct: 213 RVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA- 271

Query: 237 RKERALQEEKIRQEKVKAEA----EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292
           RKE+ALQEEK+RQEK KAEA    E+ AK RAEEAK AALE E+RAAKEAAERE    S 
Sbjct: 272 RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGAST 331

Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQ 349
           R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQ
Sbjct: 332 RAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQ 391

Query: 350 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 409
           K KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ 
Sbjct: 392 KYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQP 451

Query: 410 ISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI 468
           I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI
Sbjct: 452 INVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHI 511

Query: 469 VFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQ 516
            +S++AF+S+E YYK IGYREE+GKIE  E+YL RL  YM+LYAAL+Q
Sbjct: 512 DYSKSAFKSKEDYYKMIGYREENGKIERTEDYLKRLACYMKLYAALVQ 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473158|ref|XP_002282194.2| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859341|emb|CAN81849.1| hypothetical protein VITISV_036820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547998|ref|XP_002515056.1| Nucleoporin GLE1, putative [Ricinus communis] gi|223546107|gb|EEF47610.1| Nucleoporin GLE1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538127|ref|XP_003537556.1| PREDICTED: uncharacterized protein LOC100802744 [Glycine max] Back     alignment and taxonomy information
>gi|449435436|ref|XP_004135501.1| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15222184|ref|NP_172771.1| embryo defective 1745 protein [Arabidopsis thaliana] gi|110737727|dbj|BAF00802.1| hypothetical protein [Arabidopsis thaliana] gi|332190851|gb|AEE28972.1| embryo defective 1745 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357463209|ref|XP_003601886.1| Nucleoporin GLE1 [Medicago truncatula] gi|355490934|gb|AES72137.1| Nucleoporin GLE1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297849694|ref|XP_002892728.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi|297338570|gb|EFH68987.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4850395|gb|AAD31065.1|AC007357_14 EST gb|N37870 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
TAIR|locus:2031835611 GLE1 [Arabidopsis thaliana (ta 0.748 0.657 0.404 1.4e-74
TAIR|locus:504955347221 AT4G05523 "AT4G05523" [Arabido 0.273 0.665 0.350 8.6e-13
ZFIN|ZDB-GENE-040831-4717 gle1 "GLE1 RNA export mediator 0.195 0.146 0.322 1.3e-07
UNIPROTKB|F1RR80698 GLE1 "Uncharacterized protein" 0.374 0.287 0.258 3.6e-07
UNIPROTKB|B3KMG0444 GLE1 "Nucleoporin GLE1" [Homo 0.314 0.380 0.260 1e-06
UNIPROTKB|E2RSW4697 GLE1 "Uncharacterized protein" 0.387 0.298 0.270 1.3e-06
UNIPROTKB|Q53GS7698 GLE1 "Nucleoporin GLE1" [Homo 0.314 0.242 0.260 2.1e-06
RGD|1310843697 Gle1-ps1 "GLE1 RNA export medi 0.199 0.153 0.316 4.5e-06
MGI|MGI:1921662699 Gle1 "GLE1 RNA export mediator 0.322 0.247 0.260 4.5e-06
RGD|1307329698 Gle1 "GLE1 RNA export mediator 0.368 0.283 0.253 7.1e-06
TAIR|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 723 (259.6 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 175/433 (40%), Positives = 248/433 (57%)

Query:     1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
             MG + LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct:     1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56

Query:    60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
              G+        FV+ VS+DE+E+D     ++ + EE H+    A KRF CD LYLS+   
Sbjct:    57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112

Query:   115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
                        Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct:   113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query:   175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
             +A+V                 YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+     
Sbjct:   170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query:   235 XXXXXXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRI 294
                     QEEKIRQEK +AEA+M                               + K  
Sbjct:   230 ARRKERAHQEEKIRQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAA 285

Query:   295 TAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKEL 354
                +++  A       SS  + AQ+ G+          ++RA ESAL +E  RL+KL+EL
Sbjct:   286 EQKLAEQKAVIESVTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEEL 335

Query:   355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
             +  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+A 
Sbjct:   336 ETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAA 395

Query:   415 FSKKVVSRCETPD 427
             F+KK+V+  E P+
Sbjct:   396 FAKKMVTTKEKPN 408
GO:0005634 "nucleus" evidence=ISM
GO:0005643 "nuclear pore" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=IMP
TAIR|locus:504955347 AT4G05523 "AT4G05523" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040831-4 gle1 "GLE1 RNA export mediator homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR80 GLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B3KMG0 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSW4 GLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS7 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310843 Gle1-ps1 "GLE1 RNA export mediator homolog (yeast), pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921662 Gle1 "GLE1 RNA export mediator (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307329 Gle1 "GLE1 RNA export mediator homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
emb1745
emb1745 (embryo defective 1745); embryo defective 1745 (emb1745); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- embryonic development ending in seed dormancy; LOCATED IN- nuclear pore; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- GLE1-like (InterPro-IPR012476); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G05523.1); Has 32122 Blast hits to 20275 proteins in 1392 species- Archae - 166; Bacteria - 5743; Metazoa - 12337; Fungi - 2633; Plants - 1041; Viruses - 221; Other Eukaryotes - 9981 (source- NCBI B [...] (611 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G80670
transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (349 aa)
    •   0.819
AT1G75340
zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- z [...] (435 aa)
    •   0.819
MEE22
MEE22 (MATERNAL EFFECT EMBRYO ARREST 22); Encodes a novel protein of unknown function that is e [...] (1297 aa)
   •  • 0.807
AT5G40600
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomem [...] (306 aa)
      • 0.788
emb1353
emb1353 (embryo defective 1353); embryo defective 1353 (emb1353); FUNCTIONS IN- molecular_funct [...] (388 aa)
      • 0.788
emb2739
emb2739 (embryo defective 2739); embryo defective 2739 (emb2739); FUNCTIONS IN- molecular_funct [...] (508 aa)
      • 0.788
emb2204
emb2204 (embryo defective 2204); embryo defective 2204 (emb2204); FUNCTIONS IN- molecular_funct [...] (329 aa)
      • 0.788
AT1G04590
unknown protein; FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 23 plant structures; E [...] (384 aa)
      • 0.788
TTN10
TTN10 (TITAN 10); This gene is predicted to encode a PSF3 component of the GINS complex. This c [...] (185 aa)
      • 0.784
emb1879
emb1879 (embryo defective 1879); embryo defective 1879 (emb1879); FUNCTIONS IN- molecular_funct [...] (497 aa)
      • 0.780

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
pfam07817249 pfam07817, GLE1, GLE1-like protein 8e-43
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 3e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 4e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 4e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 5e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
COG5269379 COG5269, ZUO1, Ribosome-associated chaperone zuoti 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PRK12472508 PRK12472, PRK12472, hypothetical protein; Provisio 0.004
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.004
COG3064387 COG3064, TolA, Membrane protein involved in colici 0.004
>gnl|CDD|219595 pfam07817, GLE1, GLE1-like protein Back     alignment and domain information 
 Score =  152 bits (387), Expect = 8e-43
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 390 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 446
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 447 QVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDG-KIESLENYLSRLK 505
           +  D+LL   H+ C Y VPKH  ++ +     E   K +GY+  DG K E   +YL R+ 
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSI--DTEDGRKRMGYKRTDGGKWEDETSYLERMA 168

Query: 506 SYMRLYAALIQ 516
             MRLYAA+IQ
Sbjct: 169 GIMRLYAAIIQ 179

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 100.0
PF07817256 GLE1: GLE1-like protein; InterPro: IPR012476 The m 100.0
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 97.07
PTZ00121 2084 MAEBL; Provisional 96.8
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 95.68
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.63
PRK09510387 tolA cell envelope integrity inner membrane protei 95.44
COG3064387 TolA Membrane protein involved in colicin uptake [ 94.72
COG3064387 TolA Membrane protein involved in colicin uptake [ 94.33
PTZ00266 1021 NIMA-related protein kinase; Provisional 94.05
PRK09510387 tolA cell envelope integrity inner membrane protei 93.35
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 93.21
TIGR02794346 tolA_full TolA protein. TolA couples the inner mem 92.84
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 92.15
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 91.24
PTZ00266 1021 NIMA-related protein kinase; Provisional 90.53
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 90.18
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 86.05
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 84.17
KOG0742 630 consensus AAA+-type ATPase [Posttranslational modi 84.05
KOG4364 811 consensus Chromatin assembly factor-I [Chromatin s 83.74
PF05672171 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 82.29
KOG2140 739 consensus Uncharacterized conserved protein [Gener 81.87
PRK06568154 F0F1 ATP synthase subunit B; Validated 81.77
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 81.29
PRK14475167 F0F1 ATP synthase subunit B; Provisional 80.98
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-84  Score=680.57  Aligned_cols=481  Identities=35%  Similarity=0.492  Sum_probs=414.1

Q ss_pred             CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCccccccCccccccCccccccccceEEEecCcc
Q 009317            1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE   79 (537)
Q Consensus         1 m~~~~~e~~cp~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~   79 (537)
                      || +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+       .++++..|||.|++++
T Consensus         1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~-------d~~~~~~~~~~~~e~e   72 (591)
T KOG2412|consen    1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVR-------DGRRGGGFVMHVSEDE   72 (591)
T ss_pred             CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHH-------hhhccCCccchhHHHH
Confidence            56 789999999999999999999999999999999999999999 99999987766       5678999999999999


Q ss_pred             ccccc-----ccccccccccccccccceecccccccCCCCCccccccCCcc-chhccccchhhhHHHHhhhcccccHHHH
Q 009317           80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI  153 (537)
Q Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~ls~~~~~d~~~~~~~~~-~lm~k~~~~~~~l~e~~~~~~~~~~e~~  153 (537)
                      ++.+.     +...++.+++.+++|++|+|+.||++|.++++    +++++ +.|+++++..+.    .++|++.+..++
T Consensus        73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~  144 (591)
T KOG2412|consen   73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI  144 (591)
T ss_pred             HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence            97555     55678889999999999999999999988776    77788 888999999888    599999999999


Q ss_pred             HHHHHHHHHHHhh-hhHHhhHHHHhhHHhHHhHHHhhhhhcHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 009317          154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY  232 (537)
Q Consensus       154 r~~~~~le~~~~~-e~q~~~~~~~~~~k~~~~r~E~~r~~d~~~qr~iae~~d~~~~~~qrd~e~ksqieer~ir~~aa~  232 (537)
                      |+++..+.....+ ++...++.+..++++-++|.|+.+++ .++|+.++..+|+|++.++|.++..+||.+|+++++++.
T Consensus       145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr  223 (591)
T KOG2412|consen  145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR  223 (591)
T ss_pred             hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999998877666 77878999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhcccccCCcC
Q 009317          233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEA--------AEREAAENSKRITAGVSQDGAC  304 (537)
Q Consensus       233 eEA~rke~a~qeek~rqekak~eae~~a~~~a~e~~kaa~ea~~k~a~e~--------~~~e~~~~~~~~~~~~~~~~~~  304 (537)
                      +||.|++++.|||..+++...++++++++.|++|+++   |.++|++.++        ++.+.+....+.+.        
T Consensus       224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~~~~eek~a~qk~~~--------  292 (591)
T KOG2412|consen  224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDPKAHEEKLAEQKAVI--------  292 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCchhcccccccccccc--------
Confidence            9999999999999999999999999999999988772   2222222221        12222211111111        


Q ss_pred             CCCCCCcccccccccCCCCCCcccccchhhhcchHHHHHHHHHHHHHHHHHHHhhhcccCcccccccchhhhhhhccccc
Q 009317          305 GRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIR  384 (537)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sALe~~~er~kkLKel~~~~~~lks~lkk~~kk~rRqI~k~IGQLS  384 (537)
                                 |++.-.+..|-..--++...++.+.+....-+.++..++++++.           +++|.||+.|||||
T Consensus       293 -----------~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~-----------~~kr~in~~~~qis  350 (591)
T KOG2412|consen  293 -----------EKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQ-----------SLKRAINPPFSQIS  350 (591)
T ss_pred             -----------ccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHhhcCCChhhhh
Confidence                       11111111122222223578889999999999998888877654           68899999999999


Q ss_pred             Cchhh-HHHHHHHHHHHhcCCC---ch--HHHHHHHHHHHHHhhhcC---CCCCccchHHHHHHHHHhcCccHHHHHHHH
Q 009317          385 GLKDN-VRTKASELVKILNNPL---CP--QSISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGE  455 (537)
Q Consensus       385 ~s~~q-I~~ks~eL~~LL~~~q---~P--~~f~Ln~LAKkIVsQaEt---e~~~sAfPLA~Vav~L~s~~Pef~DILLAr  455 (537)
                      ++++| |.++++.|..++++.+   .|  +.||+|+|||++|+|+|+   .+|.+|||||+|++.||++||+|+|+|||+
T Consensus       351 ~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~  430 (591)
T KOG2412|consen  351 KSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLAR  430 (591)
T ss_pred             hccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHH
Confidence            99987 9999999999999863   34  478999999999999999   468999999999999999999999999999


Q ss_pred             hhhhceeecccccccccccccCHHHHHHHcCccc-cCCccccHHHHHHHHHHHHHHHHHHHHccCC------CCccCcch
Q 009317          456 FHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQCMTK------NACFGRRK  528 (537)
Q Consensus       456 f~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~-~dG~~Esed~YlkRMtGI~rLYAAIiQt~~~------~~Pygi~~  528 (537)
                      |||+|||+|||||+.      ++|+|++.|||+. ++|+||..|.|++||+||++|||||+|+++|      -||||+.+
T Consensus       431 l~KkCP~~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~  504 (591)
T KOG2412|consen  431 LHKKCPYVVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINH  504 (591)
T ss_pred             HHhcCCccccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhc
Confidence            999999999999984      5999999999997 6789999999999999999999999999983      48999999


Q ss_pred             hhhhhcccC
Q 009317          529 FRVSRTHMA  537 (537)
Q Consensus       529 ~W~wLARi~  537 (537)
                      +|.|||||+
T Consensus       505 gW~wLA~il  513 (591)
T KOG2412|consen  505 GWAWLARIL  513 (591)
T ss_pred             ccHHHHHHh
Confidence            999999984

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT) Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02794 tolA_full TolA protein Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 8e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-05
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297 Back     alignment and structure
 Score =  117 bits (295), Expect = 8e-30
 Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 345 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 400
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 401 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 454
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 455 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR-EEDGKIESLENYLSRLKSYMRLYAA 513
              + C + +              E   + +G++   + K E   +Y  R+   + L+A 
Sbjct: 133 RLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAI 186

Query: 514 LIQ 516
           + +
Sbjct: 187 ITR 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 100.0
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Back     alignment and structure
Probab=100.00  E-value=2.9e-49  Score=398.63  Aligned_cols=184  Identities=15%  Similarity=0.244  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHhhh-c---ccCcccccccchhhhhhhcccccCchhhHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHH
Q 009317          348 LQKLKELDEENQS-L---KLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQSISLATFSKKVV  420 (537)
Q Consensus       348 ~kkLKel~~~~~~-l---ks~lkk~~kk~rRqI~k~IGQLS~s~~qI~~ks~eL~~LL~~~---q~P~~f~Ln~LAKkIV  420 (537)
                      .++++.+++.+.. +   ++++++.++++||+|+++|||||+|.+||.+++++|.++|++.   ++|+.|+||+|||+||
T Consensus        16 ~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV   95 (297)
T 3pev_B           16 KDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVV   95 (297)
T ss_dssp             HHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHH
Confidence            3444455555533 3   4578999999999999999999999999999999999999875   4566789999999999


Q ss_pred             hhhcCC---CCCccchHHHHHHHHHhcCccHHHHHHHHhhhhceeecccccccccccccCHHHHHHHcCccc-cCCcccc
Q 009317          421 SRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIES  496 (537)
Q Consensus       421 sQaEte---~~~sAfPLA~Vav~L~s~~Pef~DILLArf~k~CPylVP~~~~~~k~~gqStEeyrK~LGYr~-~dG~~Es  496 (537)
                      +|+|++   +|++|||||.|+++||+.||+|+|+||||||++|||+||||++      .++++|+++|||++ +||+||+
T Consensus        96 ~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~------~~teegr~~mG~~~~~dg~~E~  169 (297)
T 3pev_B           96 HQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWED  169 (297)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC------CSSHHHHHHTTCCBCTTSCBCC
T ss_pred             HHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC------cccHHHHHHcCCeeCCCCCccc
Confidence            999995   5899999999999999999999999999999999999999986      36899999999987 5899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHccCC-------CCccCcchhhhhhcccC
Q 009317          497 LENYLSRLKSYMRLYAALIQCMTK-------NACFGRRKFRVSRTHMA  537 (537)
Q Consensus       497 ed~YlkRMtGI~rLYAAIiQt~~~-------~~Pygi~~~W~wLARi~  537 (537)
                      +++|++||+||++|||||+|+++|       .||||++++|+|||||+
T Consensus       170 ~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLAril  217 (297)
T 3pev_B          170 NTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARIC  217 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHh
Confidence            999999999999999999999864       48999999999999984

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 537
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00