Citrus Sinensis ID: 009396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MDDKTSIKSEMVESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETCNDSVPVVTPKRKQASNIVTSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYFP
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHcccccEEEccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccEEEEEEEccHHHHcccHHHHHHHHHcHHHHHHHHHcccccccccccEEEcccccHHHHHcccccccccEEEEEEEEcccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEccHHHHHccccccccccccccccccEEEcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHcccHEEEcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MDDKTSIKSEMVESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRekkgseislgvvdltregegdgVAQLVVENKALESGMKRAENEAESLKKLKELESRVsnealegtpskhiismerekegasseskpergrQVRKNLAFEedrslgkkmapstpggvrtassgvidicdsddepdvphllsifgdkniyistdhpaegtvgsdrettpnespkraffKYSYEEnvetcndsvpvvtpkrkqasnivtsdtesdeddvpicklkrrnIQEIVPNLVSSEMKSCCvtvaspgddnienlvtpprrrlrkgtgkfaggkrsssqthetigqqgipatedveddesedagsdsesenlngfivddgtedsdgddassgaqddsdmdFDEILSRLNrtkdqnseWELEADMLSafgkdpelCMKAVCALYRQqtseekdckgslvynsrgfskfdayRGTRlaefltdgdpqgeLKKSVKELREYDPKGLELCRTFASRYSKQLFDicknkedpyfp
Flexible Loop (DISEMBL)
mddktsiksemvesrkcselesKCLELESEIEKKKTQFEKLEQKfkeledekngIEEELKalkrekkgseislgvvdltregegdgvAQLVVENKALESGMKRAENEAESLKKlkelesrvsnealegtpskhiismerekegasseskpergrqvrknlafeedrslgkkmapstpggvrtASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHpaegtvgsdrettpnespKRAFFKYSYEENVEtcndsvpvvtpkrkqasnivtsdtesdeddvpicklkrrnIQEIVPNLVSSEMKSCCVTvaspgddnienlvtpprrrlrkgtgkfaggkrsssqthetigqqgipatedvEDDESEdagsdsesenlnGFIVDDGTEDSDGDDAssgaqddsdmDFDEILSRLnrtkdqnsewELEADMLSAFGKDPELCMKAVCALYRQQtseekdckgslvynsrgfskfdAYRGTRLaefltdgdpqgeLKKSVKELREYDPKGLELCRTFASRyskqlfdicknkedpyfp
Low Complexity Region (SEG)
MDDKTSIKSEMVESRkcseleskcleleseiekkktqfekleqkfkeledekNGIeeelkalkrekkGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAeslkklkelesRVSNEALEGTPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETCNDSVPVVTPKRKQASNIVTSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPATedveddesedagsdseseNLNGFIVddgtedsdgddassgaqddsdmdFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYFP
Disordered region (IsUnstruct)
******************************************************************************************************************************************************************************************VIDICD*****DVPHLLSIFGDKNIYIS************************FFKYSYEENVETC*****************************PICKLKRRNIQEIVPNLVSSEMKSCCVTVA********************************************************************************************************************ADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLT*****************YDPKGLELCRTFASRYSKQLFDICK********
Disordered Region (DISOPRED)
*****************SELESKCLELESEIEK***QFEKLEQKFKELEDEKNG*****************************G*GVAQLVVENKA*******************************************************************************************************************************************************************************************************************************************************************************************************************************************DMLSAFGKDPELCMKAVCALYRQ*****************GFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKE*PY**
Disordered Region (DISEMBL)
*******************LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHIISM*******************RKNLAFEEDRSL**************ASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEG*************PKRAFFKYSYEENVETCNDSVPVVTPKR*****************VPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLRKG*******************************************ENLNGFIVDDGT**************DSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYFP
Disordered Region (DISPRO)
*********EMVESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEAL****SKH*****RE**G********RGRQVRKNLAFEED****KKMAPST****RTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGT***********SPKRAFFKYSYEENVETCNDSVPVVTPKRKQ********TESDEDDVPICKLKRRNI*****************************************************************************************************************MDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKED**FP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDKTSIKSEMVESRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGVVDLTREGEGDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNEALEGTPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETCNDSVPVVTPKRKQASNIVTSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
224116814	580	predicted protein [Populus trichocarpa]	0.973	0.898	0.458	1e-104
255545060	638	conserved hypothetical protein [Ricinus	0.958	0.804	0.434	1e-102
225462681	673	PREDICTED: uncharacterized protein LOC10	0.757	0.601	0.487	1e-93
147810315	628	hypothetical protein VITISV_012135 [Viti	0.596	0.507	0.409	3e-57
9759169	441	unnamed protein product [Arabidopsis tha	0.715	0.868	0.367	2e-43
297792689	357	hypothetical protein ARALYDRAFT_495395 [	0.641	0.960	0.361	1e-40
79330747	368	uncharacterized protein [Arabidopsis tha	0.616	0.896	0.383	1e-40
52354545	368	hypothetical protein AT5G53220 [Arabidop	0.616	0.896	0.383	1e-40
293335293	653	uncharacterized protein LOC100381950 [Ze	0.248	0.203	0.574	7e-38
242051559	691	hypothetical protein SORBIDRAFT_03g00148	0.248	0.192	0.552	8e-38

>gi|224116814|ref|XP_002331820.1| predicted protein [Populus trichocarpa] gi|222875058|gb|EEF12189.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 265/578 (45%), Positives = 342/578 (59%), Gaps = 57/578 (9%)

Query: 5   TSIKSEMVESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR 64
           ++++ +++++ KC E E + +ELE EI+KK  ++ +LE K KEL +EKNG+  E+  L+ 
Sbjct: 4   SAVEIKVLKNCKCGEFEKRIVELEWEIQKKSIEYHELEAKLKELGEEKNGLANEVNGLRA 63

Query: 65  EKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK-KLKELE----- 118
           +    +   GVVDLT E E D + QL++ENK LE   K A  E E  K K KELE     
Sbjct: 64  KIGEVKEVGGVVDLTAEEEEDKMVQLMIENKVLEYEKKSAAREIEVWKEKYKELELYALK 123

Query: 119 ----------SRVSNEA-----LEGTPSKHIISMERE--KEGASSESKPERGRQVRKNLA 161
                      R  + A       GTP   I+       K     +S+ + G QVRK+L+
Sbjct: 124 LNGGVVLKGGKRGEDGADATCNTPGTPFNDIMRSHTVCGKPSVYLDSEGKCGGQVRKSLS 183

Query: 162 FEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIF----GDKNIYISTDH 217
           FEE +S  KK+APSTPG VR A+  VI+I DSDDE D   + +      G+  + IS DH
Sbjct: 184 FEEGKSPSKKIAPSTPGYVRRAAPNVINIGDSDDEFDTNGIQTFTSDGQGNGKVCISMDH 243

Query: 218 PAEGTVGSDRETTPNESPKRAFFKYSYEENVETCNDSVP-VVTPKRKQASNIVTSDTESD 276
           P E T  S        S K A      +E ++   D+VP V TPKRK+A+N++ SDTESD
Sbjct: 244 PLERTPDSKNRKISEISLKGAVCNQIRKEYMDAVYDNVPHVSTPKRKRAANVIASDTESD 303

Query: 277 EDD-VPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRL---RKGT 332
            DD VPI KLKR ++QE +P++VS +          P  D+++  VT  RRRL   R   
Sbjct: 304 VDDNVPISKLKRLHLQESIPHVVSMDS-------VPPKSDDVKGPVTRSRRRLATLRNEE 356

Query: 333 GKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGD 392
           GK      S S T +T   +GIP T+DVED ES+DAGSDSE  +L+GFIV D T  SD D
Sbjct: 357 GKVKAS-NSPSNTSKT-NYRGIPTTDDVEDSESDDAGSDSEGGSLDGFIVSDDTYASDAD 414

Query: 393 DASSGAQDDSD----------------MDFDEILSRLNRTKDQNSEWELEADMLSAFGKD 436
           D SS +++  +                 DF  ILSR  R+KD   +WE E DMLS FGKD
Sbjct: 415 DTSSESEEKPNDVNDAFGLSDDGSDDDTDFGMILSRFQRSKDHKFKWEFEGDMLSDFGKD 474

Query: 437 PELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKS 496
           PELCMKAVCALYRQQ+ EEK  K +L  N RGFSKFDA RG++LAEFL DGDP G+LKKS
Sbjct: 475 PELCMKAVCALYRQQSDEEKLNKETLHGNGRGFSKFDAPRGSKLAEFLIDGDPSGDLKKS 534

Query: 497 VKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYF 534
           V EL+ Y+ KG+ LCR  A+ YSKQLF I KNKEDP F
Sbjct: 535 VLELQAYNSKGVTLCRKLATHYSKQLFQIYKNKEDPLF 572

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545060|ref|XP_002513591.1| conserved hypothetical protein [Ricinus communis] gi|223547499|gb|EEF48994.1| conserved hypothetical protein [Ricinus communis]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 267/614 (43%), Positives = 353/614 (57%), Gaps = 101/614 (16%)

Query: 16  KCSELES-------KCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKR---- 64
           +C ELE        + +ELE EI K K+ +E LE KFKELE +K   E ELK L +    
Sbjct: 27  RCGELEETSKKAEERIVELELEIGKMKSDYEALEAKFKELEAQKTSAEGELKDLMKRNNE 86

Query: 65  ---EKKGSEISLG-------------VVDLTREGEGDG-----VAQLVVENKALESGMKR 103
              ++K +E  +              VVDLT + + D      V QL+VEN  LE   K+
Sbjct: 87  VIEQRKSAEGQMKIDCTGEKGKVKDVVVDLTEDADEDEDEEDIVDQLIVENYTLECEKKK 146

Query: 104 AENEAESLK-KLKELESRVS---------------NEALEG------------------- 128
           AE+E E  K K KELE  VS               N+ ++G                   
Sbjct: 147 AESEVEVWKEKFKELELWVSRVDESAVMQGGKRLLNDMIKGDKRPDVRVGIEQFQINKKS 206

Query: 129 ----------------TPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKM 172
                           +PS H ++    K+G   ES+ E    VR++L+FEE RS  KK+
Sbjct: 207 VDSGPTCSISGTPYKDSPSGHTLAG---KKGIYLESEGEGKSLVRRHLSFEE-RSPNKKL 262

Query: 173 APSTPGGVRTASSGVIDICDSDDEPDVPHL-LSIF---GDKNIYISTDHPAEGTVGSDRE 228
           AP TP G  +    VIDICDSDDE D+  + LSI    G++ + ISTDH   GT+   ++
Sbjct: 263 APPTPVGGNSDHLNVIDICDSDDESDIRGIHLSIPNDDGNRKVCISTDHVLTGTLNGKQD 322

Query: 229 TTPNESPKRAFFKYSYEENVETCNDSVPVV-TPKRKQASNIVTSDTESDE-DDVPICKLK 286
              +    R      YEE+++   D+VP   T KRK+A+NIVTSD+ESDE DD+PI KLK
Sbjct: 323 MISDNCSGRVVVSQDYEEDLDDFKDNVPCPPTSKRKRAANIVTSDSESDEGDDIPISKLK 382

Query: 287 RRNIQEIVPNLVSSEMKSCCVTVASPG-DDNIENLVTPPRRRL---RKGTGKFAGGKRSS 342
           + ++QE +PN  +  + +C    ASP   D+I+   T  RR L   R+        +  S
Sbjct: 383 KVHLQESIPNTANCGV-NCGPMSASPSVIDDIKCTATCSRRHLATLRQCEDIVRAERSFS 441

Query: 343 SQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDS 402
           ++T E    QGI  T+DVED ESE+ GS SE E+L GFI+D+ ++ SD D  SS + + S
Sbjct: 442 NKTSEFKHGQGISTTDDVEDSESEELGSGSEGESLGGFIIDN-SDGSDADKVSSQSDNKS 500

Query: 403 D--MDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKG 460
           D  +DFDEILS+L R+KD   +WELEADMLSAFGKD ELCMKAVCALYRQQT++E+  K 
Sbjct: 501 DGSVDFDEILSQLQRSKDHTFKWELEADMLSAFGKDDELCMKAVCALYRQQTADEQLSKE 560

Query: 461 SLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSK 520
           ++  N RGFSKFDA RG+ LA FL DGDPQG+LKKSV++L E   K ++LCRT A+RYSK
Sbjct: 561 TMYNNKRGFSKFDALRGSDLARFLIDGDPQGDLKKSVQQLEELGSKAVKLCRTLAARYSK 620

Query: 521 QLFDICKNKEDPYF 534
           QLF+I K+KEDP F
Sbjct: 621 QLFEIYKSKEDPLF 634

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462681|ref|XP_002266878.1| PREDICTED: uncharacterized protein LOC100255280 [Vitis vinifera] gi|302143706|emb|CBI22567.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/429 (48%), Positives = 275/429 (64%), Gaps = 24/429 (5%)

Query: 128 GTPS-----KHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRT 182
           GTPS     K++   + E++    + + E GR+VRK L+FEE+ S  KKMAPSTP G   
Sbjct: 244 GTPSIDAQYKYLTHPKGEQKAIHLDDEVEYGRRVRKQLSFEEECS-NKKMAPSTPAGAGP 302

Query: 183 ASSGVIDICDSDDEPDVPHLL----SIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRA 238
           AS GVI I D+DDEPD+  +      I G   + +S DH +  TV   +E T   S K+ 
Sbjct: 303 ASVGVIHISDNDDEPDIMTIKMPTPEIQGINTVCVSADHASGITVDDGKEMTSENSLKKT 362

Query: 239 FFKYSYEENVETCNDSVPVV-TPKRKQASNIVTSDTESDEDD-----VPICKLKRRNIQE 292
               S  E++  C  +VP V TPKRK+  NIVTSD+ESD  D     VP  K KR ++ E
Sbjct: 363 ISYQSDGEDLSGCKGNVPFVSTPKRKKRPNIVTSDSESDGGDDDDDKVPTRKFKRLHLGE 422

Query: 293 IVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLR-----KGTGKFAGGKRSSSQTHE 347
           ++ +  SS + SC  +    G D +   +TPP+RRL      +  G+      S+    E
Sbjct: 423 LICDPTSSHLNSCSTSATVSGVDCVRGALTPPKRRLMTLRECEKKGRAETNLASNLNARE 482

Query: 348 TIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSD--MD 405
           T  Q  I   EDVE  E+E+ GSDSE E+L GFI++D +E S GD A + ++++S+  +D
Sbjct: 483 TENQSEILTNEDVEASETEEIGSDSEGESLGGFIIND-SEVSGGDGAYNESEEESNGNVD 541

Query: 406 FDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYN 465
           F +I+SR+ R  D+ S+WE EADML+AFGKDPELCMKAVCALYRQQTSEEK  K ++  N
Sbjct: 542 FVDIISRIRRNSDKKSKWEFEADMLAAFGKDPELCMKAVCALYRQQTSEEKTVKETIYSN 601

Query: 466 SRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDI 525
            RGFS+ DA RGT LAE+LTDGDPQG+LKKSVK+L++Y PK LELCRT A+ YSKQLF I
Sbjct: 602 QRGFSQCDALRGTTLAEYLTDGDPQGDLKKSVKDLQQYHPKALELCRTLATHYSKQLFAI 661

Query: 526 CKNKEDPYF 534
            +NKEDP+F
Sbjct: 662 YQNKEDPFF 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810315|emb|CAN66887.1| hypothetical protein VITISV_012135 [Vitis vinifera]

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 157/383 (40%), Positives = 203/383 (53%), Gaps = 64/383 (16%)

Query: 128 GTPS-----KHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRT 182
           GTPS     K++   + E++    + + E GR+VRK L+FEE+ S  KKMAPSTP G   
Sbjct: 249 GTPSIDAQYKYLTHPKGEQKAIHLDDEVEYGRRVRKQLSFEEECS-NKKMAPSTPAGAGP 307

Query: 183 ASSGVIDICDSDDEPDVPHLL----SIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRA 238
           AS GVI I D+DDEPD+  +      I G   + +S DH +  TV   +E T   S K+ 
Sbjct: 308 ASVGVIHISDNDDEPDIMTIKMPTPEIQGINTVCVSADHASGITVDDGKEMTSENSLKKT 367

Query: 239 FFKYSYEENVETCNDSVPVV-TPKRKQASNIVTSDTESDEDD-----VPICKLKRRNIQE 292
               S  E++  C  +VP V TPKRK+  NIVTSD+ESD  D     VP  K KR ++ E
Sbjct: 368 ISYQSDGEDLSGCKGNVPFVSTPKRKKRPNIVTSDSESDGGDDDDDKVPTRKFKRLHLGE 427

Query: 293 IVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLR-----KGTGKFAGGKRSSSQTHE 347
           ++ +  SS + SC  +    G D +   +TPP+RRL      +  G+      S+    E
Sbjct: 428 LICDPTSSHLNSCSTSATVSGVDCVRGALTPPKRRLMTLRECEKKGRAETNLASNLNARE 487

Query: 348 TIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSDMDFD 407
           T  Q  I   EDVE  E+E+ G                                      
Sbjct: 488 TENQSEILTNEDVEASETEEXG-------------------------------------- 509

Query: 408 EILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSR 467
                + R  D+ S+WE EADML+AFGKDPELCMKAVCALYRQQTSEEK  K ++  N R
Sbjct: 510 -----IRRNSDKKSKWEFEADMLAAFGKDPELCMKAVCALYRQQTSEEKTVKETIYSNQR 564

Query: 468 GFSKFDAYRGTRLAEFLTDGDPQ 490
           GFS+ DA RGT LAE+LTDGDPQ
Sbjct: 565 GFSQCDALRGTTLAEYLTDGDPQ 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759169|dbj|BAB09784.1| unnamed protein product [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 170/462 (36%), Positives = 245/462 (53%), Gaps = 79/462 (17%)

Query: 97  LESGMKRAENEAESLK-KLKELES---------RVSNEALEGTPSK------HIISMERE 140
           LE+ +++  NE ESL+ K KELES         R   E+ EG+P        +I+  +R+
Sbjct: 29  LETELQKRNNEFESLELKFKELESEKLVVEEESRNLKESEEGSPCMTTPVKDYILGRDRD 88

Query: 141 KEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVP 200
           ++  +  S+    R+V K L+FE+D   G K+            + V+D+CDS+ E    
Sbjct: 89  RDRDTMSSR----RRVNKMLSFEDD---GHKL------------TDVVDLCDSETEQRSE 129

Query: 201 HLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETC--NDSVPVV 258
                F D       D   E  +G + E                +E+VE C  N S P+ 
Sbjct: 130 E--EEFAD-----VMDTIEEANIGENYE----------------DEDVEACDANTSSPLS 166

Query: 259 TPKRKQ--ASNIVTSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDN 316
             KRK+  AS+      + DED++PI  LK  N++       + EM     T   P    
Sbjct: 167 RRKRKRVIASDDDDDADDDDEDNIPISILK--NLKP-----TNQEMSDLFDT---PNKGE 216

Query: 317 IENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESEN 376
            E+     +RR+     K    +  S+ T   +G   IP T++ EDDE+E+ GS+SE E+
Sbjct: 217 SESRRLSGQRRVSSRLNKKRVSEEVSASTERLVG---IPTTDNAEDDETEEEGSESEGES 273

Query: 377 LNGFIVDDGTED---SDGDDASSGAQDDSDMDFDEILSRLNRTKD-QNSEWELEADMLSA 432
           L+GFI+DD       S+  D     + D ++ + +++SRL R K  +  +WE EADML+ 
Sbjct: 274 LDGFIIDDDDSQESVSEKSDEIGVEESDGEVGYADVMSRLRREKKPEKRKWEYEADMLAD 333

Query: 433 FGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGE 492
           FGKDPELCM+AVC L+R QT +EK  + S V N RGFSK DA RGT +A FLTDGD  G+
Sbjct: 334 FGKDPELCMRAVCVLFRFQTEDEKVERSSHVSNGRGFSKVDAVRGTSIALFLTDGDSAGD 393

Query: 493 LKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYF 534
           +KKSV+EL+ +D KG+E C   A +YSKQLF I  N+EDP+F
Sbjct: 394 MKKSVEELKVFDFKGVEKCEELARKYSKQLFQIYNNREDPFF 435

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792689|ref|XP_002864229.1| hypothetical protein ARALYDRAFT_495395 [Arabidopsis lyrata subsp. lyrata] gi|297310064|gb|EFH40488.1| hypothetical protein ARALYDRAFT_495395 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 226/412 (54%), Gaps = 69/412 (16%)

Query: 129 TPSK-HIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGV 187
           TP K +I+  +R+++  SS       R+V K L+F++D   G ++            +G+
Sbjct: 3   TPVKDYILERDRDRDNMSSR------RRVNKMLSFKDD---GHEL------------TGL 41

Query: 188 IDICDSDDEPDVPHLLSIFGDKNIYISTDHPAEGTVGSDRETTPNESPKRAFFKYSYEEN 247
           +D+CD + E           +K      D   E +VG + E                +E+
Sbjct: 42  VDLCDGETEER--------SEKESADVMDTLEERSVGENYE----------------DED 77

Query: 248 VETC--NDSVPVVTPKRKQASNIVTSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSC 305
           VE C  N S P+   KRK+   I + + + DED++PI  LK  N++       + EM S 
Sbjct: 78  VEPCDVNTSTPLSRRKRKRV--IASDEDDDDEDNIPISILK--NLKP-----TNQEM-SD 127

Query: 306 CVTVASPGDDNIENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDES 365
            V  ++ G+     L    +RR+     K    +  S+ T   +G   I  +++  DDE+
Sbjct: 128 LVDTSNKGESESRRL--SGKRRVSSRLNKQRVLEEISATTERLVG---ILTSDNAADDET 182

Query: 366 EDAGSDSESENLNGFIVDDGTEDSDGDDASSGAQDDSDMD--FDEILSRLNRTKD-QNSE 422
           E+    SESE+L+GFIVDD + +S   ++    +++SD +  + E++SRL R K  +N +
Sbjct: 183 EEE---SESESLDGFIVDDDSHESVSKNSDETGEEESDGEPGYAEVMSRLRRDKKPENRK 239

Query: 423 WELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAE 482
           WE EADML+ FGKDPELCM+AVC L+R QT +EK  + S V N RGFSK DA RGT +A 
Sbjct: 240 WEYEADMLADFGKDPELCMRAVCVLFRFQTEDEKVGRSSHVSNGRGFSKVDAERGTSIAL 299

Query: 483 FLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPYF 534
           FLTDGDP G+LKKSV+ L+ +  + ++ C   A +YSKQLF+I  N+EDP+F
Sbjct: 300 FLTDGDPAGDLKKSVEHLKSFKFEDVKKCEILACKYSKQLFEIYNNREDPFF 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79330747|ref|NP_001032066.1| uncharacterized protein [Arabidopsis thaliana] gi|79536815|ref|NP_200134.2| uncharacterized protein [Arabidopsis thaliana] gi|186531691|ref|NP_001119424.1| uncharacterized protein [Arabidopsis thaliana] gi|60547941|gb|AAX23934.1| hypothetical protein At5g53220 [Arabidopsis thaliana] gi|332008941|gb|AED96324.1| uncharacterized protein [Arabidopsis thaliana] gi|332008942|gb|AED96325.1| uncharacterized protein [Arabidopsis thaliana] gi|332008943|gb|AED96326.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 209/389 (53%), Gaps = 59/389 (15%)

Query: 154 RQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYI 213
           R+V K L+FE+D   G K+            + V+D+CDS+ E         F D     
Sbjct: 25  RRVNKMLSFEDD---GHKL------------TDVVDLCDSETEQRSEE--EEFAD----- 62

Query: 214 STDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETC--NDSVPVVTPKRKQ--ASNIV 269
             D   E  +G + E                +E+VE C  N S P+   KRK+  AS+  
Sbjct: 63  VMDTIEEANIGENYE----------------DEDVEACDANTSSPLSRRKRKRVIASDDD 106

Query: 270 TSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLR 329
               + DED++PI  LK  N++       + EM     T   P     E+     +RR+ 
Sbjct: 107 DDADDDDEDNIPISILK--NLKP-----TNQEMSDLFDT---PNKGESESRRLSGQRRVS 156

Query: 330 KGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTED- 388
               K    +  S+ T   +G   IP T++ EDDE+E+ GS+SE E+L+GFI+DD     
Sbjct: 157 SRLNKKRVSEEVSASTERLVG---IPTTDNAEDDETEEEGSESEGESLDGFIIDDDDSQE 213

Query: 389 --SDGDDASSGAQDDSDMDFDEILSRLNRTKD-QNSEWELEADMLSAFGKDPELCMKAVC 445
             S+  D     + D ++ + +++SRL R K  +  +WE EADML+ FGKDPELCM+AVC
Sbjct: 214 SVSEKSDEIGVEESDGEVGYADVMSRLRREKKPEKRKWEYEADMLADFGKDPELCMRAVC 273

Query: 446 ALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDP 505
            L+R QT +EK  + S V N RGFSK DA RGT +A FLTDGD  G++KKSV+EL+ +D 
Sbjct: 274 VLFRFQTEDEKVERSSHVSNGRGFSKVDAVRGTSIALFLTDGDSAGDMKKSVEELKVFDF 333

Query: 506 KGLELCRTFASRYSKQLFDICKNKEDPYF 534
           KG+E C   A +YSKQLF I  N+EDP+F
Sbjct: 334 KGVEKCEELARKYSKQLFQIYNNREDPFF 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52354545|gb|AAU44593.1| hypothetical protein AT5G53220 [Arabidopsis thaliana] gi|52354547|gb|AAU44594.1| hypothetical protein AT5G53220 [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 209/389 (53%), Gaps = 59/389 (15%)

Query: 154 RQVRKNLAFEEDRSLGKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYI 213
           R+V K L+FE+D   G K+            + V+D+CDS+ E         F D     
Sbjct: 25  RRVNKMLSFEDD---GHKL------------TDVVDLCDSETEQRSEE--EEFAD----- 62

Query: 214 STDHPAEGTVGSDRETTPNESPKRAFFKYSYEENVETC--NDSVPVVTPKRKQ--ASNIV 269
             D   E  +G + E                +E+VE C  N S P+   KRK+  AS+  
Sbjct: 63  VMDTIEEANIGENYE----------------DEDVEACDANTSSPLSRRKRKRVIASDDD 106

Query: 270 TSDTESDEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVASPGDDNIENLVTPPRRRLR 329
               + DED++PI  LK  N++       + EM     T   P     E+     +RR+ 
Sbjct: 107 DDADDDDEDNIPISILK--NLKP-----TNQEMSDLFDT---PNKGESESRRLSGQRRVS 156

Query: 330 KGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTED- 388
               K    +  S+ T   +G   IP T++ EDDE+E+ GS+SE E+L+GFI+DD     
Sbjct: 157 SRLNKKRVSEEVSASTERLVG---IPXTDNAEDDETEEEGSESEGESLDGFIIDDDDSQE 213

Query: 389 --SDGDDASSGAQDDSDMDFDEILSRLNR-TKDQNSEWELEADMLSAFGKDPELCMKAVC 445
             S+  D     + D ++ + +++SRL R  K +  +WE EADML+ FGKDPELCM+AVC
Sbjct: 214 SVSEKSDEIGVEESDGEVGYADVMSRLRREKKPEKRKWEYEADMLADFGKDPELCMRAVC 273

Query: 446 ALYRQQTSEEKDCKGSLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDP 505
            L+R QT +EK  + S V N RGFSK DA RGT +A FLTDGD  G++KKSV+EL+ +D 
Sbjct: 274 VLFRFQTEDEKVERSSHVSNGRGFSKVDAVRGTSIALFLTDGDSAGDMKKSVEELKVFDF 333

Query: 506 KGLELCRTFASRYSKQLFDICKNKEDPYF 534
           KG+E C   A +YSKQLF I  N+EDP+F
Sbjct: 334 KGVEKCEELARKYSKQLFQIYNNREDPFF 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293335293|ref|NP_001168194.1| uncharacterized protein LOC100381950 [Zea mays] gi|223946657|gb|ACN27412.1| unknown [Zea mays] gi|414875686|tpg|DAA52817.1| TPA: hypothetical protein ZEAMMB73_119411 [Zea mays] gi|414875687|tpg|DAA52818.1| TPA: hypothetical protein ZEAMMB73_119411 [Zea mays]

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 401 DSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKG 460
           D ++D+ ++++ + R K +  EW+ EADML+AFG+ PELC+KAVCALYR+QT +E+  K 
Sbjct: 519 DGEVDYKDVMACIGRKK-KAKEWDYEADMLAAFGEHPELCLKAVCALYRKQTEDEQVEKA 577

Query: 461 SLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSK 520
           SLV+N +GFS  DA RG+R+AEFL DGD  G LKK+V +L EYD    E CR  AS YSK
Sbjct: 578 SLVHNKQGFSHKDAPRGSRIAEFLLDGDLVGPLKKTVSDLDEYDRYAFEFCRKVASHYSK 637

Query: 521 QLFDICKNKEDPYF 534
           QLF I +NKEDPYF
Sbjct: 638 QLFAIYQNKEDPYF 651

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051559|ref|XP_002454925.1| hypothetical protein SORBIDRAFT_03g001480 [Sorghum bicolor] gi|241926900|gb|EES00045.1| hypothetical protein SORBIDRAFT_03g001480 [Sorghum bicolor]

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 401 DSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKG 460
           D ++D+ ++++ + R K +  EW+ EADML+AFG+ PELC+KAVCA+YR+QT +E+  K 
Sbjct: 557 DGEVDYKDVMASIGRKK-KAKEWDYEADMLAAFGEHPELCLKAVCAIYRKQTEDEQVEKA 615

Query: 461 SLVYNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSK 520
           SLV+N +GFS  DA RG+R+AEFL DGD  G +KK+V +L +YD    E CR  AS YSK
Sbjct: 616 SLVHNKQGFSHKDAPRGSRIAEFLLDGDRVGPVKKTVSDLDDYDHYAFEFCRKVASHYSK 675

Query: 521 QLFDICKNKEDPYF 534
           QLF I +NKEDPYF
Sbjct: 676 QLFAIYQNKEDPYF 689

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2154202	368	AT5G53220 "AT5G53220" [Arabido	0.521	0.758	0.385	8.4e-42

TAIR|locus:2154202 AT5G53220 "AT5G53220" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 116/301 (38%), Positives = 157/301 (52%)

Query:   243 SYE-ENVETC--NDSVPVVTPKRKQ--ASNIVTSDTESDEDDVPICKLKRRNIQEIVPNL 297
             +YE E+VE C  N S P+   KRK+  AS+      + DED++PI  LK  N++   P  
Sbjct:    75 NYEDEDVEACDANTSSPLSRRKRKRVIASDDDDDADDDDEDNIPISILK--NLK---PT- 128

Query:   298 VSSEMKSCCVTVASPGDDNIENLVTPPRRRLRKGTGKFAGGKRSSSQTHETIGQQGIPAT 357
              + EM     T   P     E+     +RR+     K    +  S+ T   +G   IP T
Sbjct:   129 -NQEMSDLFDT---PNKGESESRRLSGQRRVSSRLNKKRVSEEVSASTERLVG---IPTT 181

Query:   358 XXXXXXXXXXXXXXXXXXNLNGFIVXXXXXXXXXXXXXXXXXXXXXXX---FDEILSRLN 414
                               +L+GFI+                          + +++SRL 
Sbjct:   182 DNAEDDETEEEGSESEGESLDGFIIDDDDSQESVSEKSDEIGVEESDGEVGYADVMSRLR 241

Query:   415 RTKD-QNSEWELEADMLSAFGKDPELCMKAVCALYRQQTSEEKDCKGSLVYNSRGFSKFD 473
             R K  +  +WE EADML+ FGKDPELCM+AVC L+R QT +EK  + S V N RGFSK D
Sbjct:   242 REKKPEKRKWEYEADMLADFGKDPELCMRAVCVLFRFQTEDEKVERSSHVSNGRGFSKVD 301

Query:   474 AYRGTRLAEFLTDGDPQGELKKSVKELREYDPKGLELCRTFASRYSKQLFDICKNKEDPY 533
             A RGT +A FLTDGD  G++KKSV+EL+ +D KG+E C   A +YSKQLF I  N+EDP+
Sbjct:   302 AVRGTSIALFLTDGDSAGDMKKSVEELKVFDFKGVEKCEELARKYSKQLFQIYNNREDPF 361

Query:   534 F 534
             F
Sbjct:   362 F 362


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.130   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      535       434   0.00087  118 3  11 23  0.49    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  250 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.13u 0.15s 40.28t   Elapsed:  00:00:02
  Total cpu time:  40.13u 0.15s 40.28t   Elapsed:  00:00:02
  Start:  Thu May  9 19:10:15 2013   End:  Thu May  9 19:10:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01970012 hypothetical protein (580 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 15  RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLG 74
           R+  ELE++  ELES++++   +  +LE+K +EL++E   +E EL+ L+ E +  E  L 
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375

Query: 75  VVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEG--TPSK 132
            ++   E     VAQL ++  +L + ++R E   E L+  +E   +   E L+       
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435

Query: 133 HIISMEREKEGASSESKPERGRQVRKNLAFEEDR 166
             +  E E+     E   E   ++ + L    + 
Sbjct: 436 KELQAELEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 15  RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLG 74
            +  ELE +  ELE E+E+ + + E+LE++ + LE+    ++EE++ L+ +++  +  L 
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 75  VVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVSNEALE 127
            ++   E     +  L  E ++LE   +R E E E L+ +++ELE ++     E
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 19  ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDL 78
           E E +  EL +E+++ + + E+L  +  ELE+E   +++EL AL  E    E    +   
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI--- 306

Query: 79  TREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHIISME 138
            RE   +   QL      LE    + +  AE L +L+E    +  E LE   ++     E
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-LESLEAELE---E 362

Query: 139 REKEGASSESKPERGRQVRKNLA 161
            E E    ES+ E   +  + L 
Sbjct: 363 LEAELEELESRLEELEEQLETLR 385

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 14  SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISL 73
            R+  ELE K  ELE +I + +    +L ++ +ELE+E   + +EL+ L R+       L
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 74  GVVDLTREGEGDGVAQLVVENKAL-ESGMKRAENEAESLKKLKELESRVSNEALEGTPSK 132
             ++   E   + +AQL  E   L     +  E   E+ ++L E E+ +  E LE    +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI--EELEAQIEQ 793

Query: 133 HIISMEREKEGASSESK 149
               ++  +E       
Sbjct: 794 LKEELKALREALDELRA 810

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 18  SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG--SEISLGV 75
           SEL+ +  +LE  I + +++ E L++  + L +    +EE L++L+   K    E+    
Sbjct: 89  SELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELR 148

Query: 76  VDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKE 116
            DL  E     V +L  E + L+  ++R +   + L+ L E
Sbjct: 149 QDLREE-----VEELREELERLQENLQRLQEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 32/117 (27%), Positives = 60/117 (51%)

Query: 26  ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGD 85
           ELE EIE+ + + ++LE++ +ELE E   ++EEL+ L+ EK+  E  L  ++  +E   +
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 86  GVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHIISMEREKE 142
            + +L  E   L+  +++     E L+   E       E  E    ++  ++E E E
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 26  ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGD 85
           EL+ E+ + + +  +L+++  EL+ E   +++EL  L+ E +  +  L      ++   +
Sbjct: 70  ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL---ARIKQLSAN 126

Query: 86  GVAQLVVENKALESGMKRAENEAESLK-KLKELESRVSNE 124
            +  L  EN+ L   +   + E E+L+ + + L+      
Sbjct: 127 AIE-LDEENRELREELAELKQENEALEAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 32/152 (21%)

Query: 18  SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKN------GIEEELKALKR------- 64
            ++E +  ++E EI++ + +  +LE + KELE E          + +L  L         
Sbjct: 89  KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVF 148

Query: 65  ---------EKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLK 115
                    E+   E  +  V+     +G     +VV            E   E  ++LK
Sbjct: 149 VGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLK----------ELSDEVEEELK 198

Query: 116 ELESRVSNEALEGTPSKHIISMEREKEGASSE 147
           +L         EGTPS+ I  ++ E E    E
Sbjct: 199 KLGFERLELEEEGTPSELIREIKEELEEIEKE 230

Length = 646

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 18  SELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVD 77
             +E +   L  + E+ + + E+LE   ++LE     +++E   L+ + +  E  +  ++
Sbjct: 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 78  LTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHIISM 137
              E +   +++L  + +ALE      E  +E      E E     E         +  +
Sbjct: 910 AQIEKKRKRLSELKAKLEALE------EELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963

Query: 138 ERE 140
           E E
Sbjct: 964 EEE 966

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 39.0 bits (92), Expect = 0.004
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 26 ELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE 65
           LE    + + Q  +LE K ++LE E   +E EL+ LK E
Sbjct: 5  ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSE 44

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
COG2433	652	Uncharacterized conserved protein [Function unknow	95.01
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.52
PRK04778	569	septation ring formation regulator EzrA; Provision	90.84
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.33
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	88.23
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.87
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	85.26
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	82.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	82.67
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	82.14
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	82.08

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=0.084  Score=58.54  Aligned_cols=102  Identities=26%  Similarity=0.364  Sum_probs=84.3

Q ss_pred             hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhh
Q 009396           20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALES   99 (535)
Q Consensus        20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~   99 (535)
                      .++++..|+.-+++.+.|+..|++++.++..|.-.|+.+|..++|+-+.+..    .++       .+-++--++..|+-
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~----~~r-------ei~~~~~~I~~L~~  488 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR----KDR-------EIRARDRRIERLEK  488 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhH-------HHHHHHHHHHHHHH
Confidence            4778889999999999999999999999999999999999999887664321    111       24446677888999


Q ss_pred             hhhhhhHHHHHHH-HHHHHh-hhhhccccCCCCcc
Q 009396          100 GMKRAENEAESLK-KLKELE-SRVSNEALEGTPSK  132 (535)
Q Consensus       100 ekk~ae~E~E~wK-k~~eLE-s~vl~l~~~gTp~~  132 (535)
                      +......++|+++ ++.+|+ .|.+-+--.|||++
T Consensus       489 ~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk  523 (652)
T COG2433         489 ELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK  523 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccee
Confidence            9999999999999 999998 67777778899999

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.21  E-value=0.11  Score=47.32  Aligned_cols=106  Identities=30%  Similarity=0.384  Sum_probs=84.6

Q ss_pred             chhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCccc--------cccccccccc------
Q 009396           17 CSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS--------LGVVDLTREG------   82 (535)
Q Consensus        17 C~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~--------~~vvdlt~~~------   82 (535)
                      =-+++.++-.|+.+..++..++..|..|+.-|+.+.-.++..|..++...+..++.        +-|--|+.+-      
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~   95 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK   95 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999999999998877766541        2222222222      


Q ss_pred             ---CCCcchhhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhhhh
Q 009396           83 ---EGDGVAQLVVENKALESGMKRAENEAESLK-KLKELESRVS  122 (535)
Q Consensus        83 ---eee~~~Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~vl  122 (535)
                         -.+++.|+.+..-.+|--.+..|.+..-|- ||.+|+...-
T Consensus        96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   96 LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               256778888888888888999999999999 9999987643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.52  E-value=0.36  Score=48.93  Aligned_cols=73  Identities=36%  Similarity=0.499  Sum_probs=60.7

Q ss_pred             hhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhcc-CcccccccccccccCCCcchhhhhhhhhhhhhhhhhhHHHHHH
Q 009396           33 KKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKG-SEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESL  111 (535)
Q Consensus        33 Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~-~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ekk~ae~E~E~w  111 (535)
                      .+|..|+.+..||.|+..||..|-.||..|..+-+- .|.               +-.|-++|..||-..++..-|+.-+
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er---------------lk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER---------------LKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhchhHHHHH
Confidence            677889999999999999999998888888664332 232               5557899999999999999999999


Q ss_pred             H-HHHHHhhh
Q 009396          112 K-KLKELESR  120 (535)
Q Consensus       112 K-k~~eLEs~  120 (535)
                      | ||.|||--
T Consensus       197 ~~r~~ELe~~  206 (290)
T COG4026         197 KKRWDELEPG  206 (290)
T ss_pred             HHHHHHhccc
Confidence            9 99999864

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=90.84  E-value=0.55  Score=50.49  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=35.4

Q ss_pred             hhhhhhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcceeechh
Q 009396           96 ALESGMKRAENEAESLK-KLKELESRVSNEALEGTPSKHIISME  138 (535)
Q Consensus        96 ~LE~ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~y~~~~~  138 (535)
                      .|..+-..|...++-|+ ++.++..++.+.++||.|..|+.-..
T Consensus       408 ~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~  451 (569)
T PRK04778        408 GLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFF  451 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence            34455566778889999 99999999999999999999877533

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.33  E-value=0.51  Score=44.19  Aligned_cols=97  Identities=26%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhh
Q 009396           14 SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVE   93 (535)
Q Consensus        14 ~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~e   93 (535)
                      -..|++|..|+..+..++++++.+....+..+++|..+...|+.+++.|+.+.+.+..  .+-.+.     |-++-|.++
T Consensus        87 ~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k--~~e~l~-----DE~~~L~l~  159 (194)
T PF08614_consen   87 YRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK--ANEILQ-----DELQALQLQ  159 (194)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHHHHH
Confidence            3679999999999999999999999999999999999999888888888776655532  111111     226678999


Q ss_pred             hhhhhhhhhhhhHHHH----HHHHHHHH
Q 009396           94 NKALESGMKRAENEAE----SLKKLKEL  117 (535)
Q Consensus        94 N~~LE~ekk~ae~E~E----~wKk~~eL  117 (535)
                      ++.||-..++.+.|+.    -|-.++.=
T Consensus       160 ~~~~e~k~~~l~~En~~Lv~Rwm~~k~~  187 (194)
T PF08614_consen  160 LNMLEEKLRKLEEENRELVERWMQRKAQ  187 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999964    45544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=88.23  E-value=1.2  Score=37.32  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHHhh
Q 009396           38 FEKLEQKFKELEDEKNGIEEELKALKREK   66 (535)
Q Consensus        38 ~E~LE~K~kel~~EK~~le~El~~lKr~~   66 (535)
                      |+.||+|...+..-...|+.|+..||..+
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n   34 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKN   34 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555544443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.87  E-value=1.9  Score=48.54  Aligned_cols=60  Identities=22%  Similarity=0.424  Sum_probs=51.5

Q ss_pred             hhhHhhhh-cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHh
Q 009396            6 SIKSEMVE-SRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKRE   65 (535)
Q Consensus         6 ~~~~~~~~-~~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~   65 (535)
                      .+|+++.. -..|-+|+.|+..|....|+=+.-...||.|++++...|+.+|..|.+-|+.
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~  517 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA  517 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555543 3567788999999999999999999999999999999999999999999764

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.26  E-value=3.7  Score=39.61  Aligned_cols=105  Identities=33%  Similarity=0.415  Sum_probs=69.0

Q ss_pred             ccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccC-cc----ccccccccccc-CCCcch
Q 009396           15 RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGS-EI----SLGVVDLTREG-EGDGVA   88 (535)
Q Consensus        15 ~rC~E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~-E~----~~~vvdlt~~~-eee~~~   88 (535)
                      .++-|...|+..++.+++.-..-.+.+|.++++|+.+...+.+-|+.|....+.. +.    ..-|-+|+..- +-+.-+
T Consensus       113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra  192 (237)
T PF00261_consen  113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA  192 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888899999999999999999999999999999999999998885533322 11    11222222221 111111


Q ss_pred             h-hhhhhhhhhhhhhhhhHHHHHHH-HHHHHhh
Q 009396           89 Q-LVVENKALESGMKRAENEAESLK-KLKELES  119 (535)
Q Consensus        89 Q-l~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs  119 (535)
                      . .--.-..||-+..+.+.++..|| +|+.+.-
T Consensus       193 e~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~  225 (237)
T PF00261_consen  193 EFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE  225 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11223456666777788888999 8876643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=82.85  E-value=3  Score=45.17  Aligned_cols=92  Identities=27%  Similarity=0.490  Sum_probs=64.2

Q ss_pred             hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhh
Q 009396           19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALE   98 (535)
Q Consensus        19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE   98 (535)
                      .|+.+...+...|.....-|-.+...++++......++.+..++.....                            .|.
T Consensus       355 ~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~----------------------------~L~  406 (560)
T PF06160_consen  355 ELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQ----------------------------SLR  406 (560)
T ss_pred             HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence            4455555556666666666666666666666665555555555543322                            344


Q ss_pred             hhhhhhhHHHHHHH-HHHHHhhhhhccccCCCCcceeechh
Q 009396           99 SGMKRAENEAESLK-KLKELESRVSNEALEGTPSKHIISME  138 (535)
Q Consensus        99 ~ekk~ae~E~E~wK-k~~eLEs~vl~l~~~gTp~~y~~~~~  138 (535)
                      -+-++|...+.-|+ ++-++-.++.+.++||.|-.|++-..
T Consensus       407 ~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~  447 (560)
T PF06160_consen  407 KDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFF  447 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            55678888999999 99999999999999999999877543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=82.67  E-value=3.9  Score=45.29  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=13.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHH
Q 009396           28 ESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKA   61 (535)
Q Consensus        28 e~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~   61 (535)
                      +..+++...+.+.|......|+.+...++.++..
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~  175 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVER  175 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=82.14  E-value=4.2  Score=40.08  Aligned_cols=98  Identities=27%  Similarity=0.363  Sum_probs=51.2

Q ss_pred             hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh-------chHHHHHHHHHhhccCcccccccccccccCCCcchhhh
Q 009396           19 ELESKCLELESEIEKKKTQFEKLEQKFKELEDEKN-------GIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLV   91 (535)
Q Consensus        19 E~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~-------~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~   91 (535)
                      ||+.|+..++.+..+...+...-+.+-..|+.+..       .|+.....+...+..++.+..+.--+++.=+..+..+-
T Consensus         9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~   88 (246)
T PF00769_consen    9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE   88 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777776666655544444444443333       33333333333333332222222222222234455566


Q ss_pred             hhhhhhhhhhhhhhHHHHHHH-HHHH
Q 009396           92 VENKALESGMKRAENEAESLK-KLKE  116 (535)
Q Consensus        92 ~eN~~LE~ekk~ae~E~E~wK-k~~e  116 (535)
                      -+-..|+-++.+.+.|++.|+ ++.+
T Consensus        89 ~~i~~l~ee~~~ke~Ea~~lq~el~~  114 (246)
T PF00769_consen   89 AEIARLEEESERKEEEAEELQEELEE  114 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666788889999999999999 5443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.08  E-value=5.4  Score=40.61  Aligned_cols=90  Identities=26%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhhh
Q 009396           22 SKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGM  101 (535)
Q Consensus        22 ~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~ek  101 (535)
                      .-+..++.|+++.+.|-+.|.+.+++|+.|...+..|+..|+.+.+.+..              .-.++.-+.+.+..+.
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~--------------eE~~~~~~~n~~~~~l  108 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE--------------EEEEYWREYNELQLEL  108 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence            44567778888888888888888888888888888888888776665531              0235677788888888


Q ss_pred             hhhhHHHHHHH-HHHHHhhhhhccc
Q 009396          102 KRAENEAESLK-KLKELESRVSNEA  125 (535)
Q Consensus       102 k~ae~E~E~wK-k~~eLEs~vl~l~  125 (535)
                      ...+.|....+ +|.-+-..+-+|.
T Consensus       109 ~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  109 IEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888 7777666665555

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 90/570 (15%), Positives = 166/570 (29%), Gaps = 165/570 (28%)

Query: 27  LESEIEKKKTQFEKL----EQKF------KELEDEKNGI--EEELKALKREKKGSEISLG 74
           ++ E  + + Q++ +    E  F      K+++D    I  +EE+  +   K     +L 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 75  VVDLTREGEGDGVAQLVVENKALESGMK------RAENEAESLKKLKELESRVSNEALEG 128
           +       + + V + V E   L    K      + E    S+     +E R   + L  
Sbjct: 67  LFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYN 121

Query: 129 TP---SKHIISMEREKE-----GASSESKPER----------GRQVRKNLAFE--EDRSL 168
                +K+ +S  R +       A  E +P +          G+     +A +      +
Sbjct: 122 DNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKV 176

Query: 169 GKKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFG--DKNIYISTDHPAEGTVGSD 226
             KM       +   +      C+S +   +  L  +    D N    +DH +   +   
Sbjct: 177 QCKM----DFKIFWLNLKN---CNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 227 RETTPNESPKRAFFKYSYEE------NVETCNDSVPVVTPKRKQASNI-----VTSDTES 275
                    +R      YE       NV+           K   A N+     +T+  + 
Sbjct: 229 SI---QAELRRLLKSKPYENCLLVLLNVQN---------AKAWNAFNLSCKILLTTRFKQ 276

Query: 276 DEDDVPICKLKRRNIQEIVPNLVSSEMKSCCVTVA--SPGDDNIENLVTPPR------RR 327
             D +        ++      L   E+KS  +      P D   E L T PR        
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 328 LRKGTGKFAGGKRSSSQTHETIGQQGIPATEDVEDDESEDAGSDSESENLNGFIVDDGTE 387
           +R G   +   K  +     TI +  +     +E  E          + L+ F       
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYRKM-----FDRLSVF------- 381

Query: 388 DSDGDDASSGAQDDSDMDFDEILSRLNRTKDQNSEWELEADMLSAFGKDPELCMKAVCAL 447
                         + +    +LS +         W    D++     D  + +      
Sbjct: 382 -----------PPSAHIP-TILLSLI---------WF---DVIK---SDVMVVV------ 408

Query: 448 YRQQTSEEKDCKGSLV---YNSRGFSKFDAYRGTRLAEFLTDGDPQGELKKSVKELREYD 504
                   K  K SLV         S    Y      E     + +  L +S+  +  Y+
Sbjct: 409 -------NKLHKYSLVEKQPKESTISIPSIYL-----ELKVKLENEYALHRSI--VDHYN 454

Query: 505 PKGLELCRTFASRYSKQLFDICKNKEDPYF 534
                  +TF         D+     D YF
Sbjct: 455 IP-----KTF------DSDDLIPPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 34/227 (14%), Positives = 74/227 (32%), Gaps = 58/227 (25%)

Query: 22  SKCLELESEIEKKKTQFEKLEQKFKELED-------EKNGIEEELKALKREKKGSEISLG 74
             C   E+ +E  +    +++  +    D         + I+ EL+ L + K   E  L 
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLL 248

Query: 75  VVD-------------------LTREGE-GDGVAQLVVENKALE---SGMKRAENEAESL 111
           V+                     TR  +  D ++     + +L+     +   E ++  L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 112 KKLKELESRVSNEALEGTPSKHIISM--EREKEGASSESKPERGRQVRKNLAFEEDRSLG 169
           K L      +  E L   P    +S+  E  ++G    +  +  + V  +        L 
Sbjct: 309 KYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGL---ATWDNWKHVNCD-------KLT 356

Query: 170 KKMAPSTPGGVRTASSGVIDICDSDDEPDVPHLLSIFGDKNIYISTD 216
             +  S            +++ +  +   +   LS+F   + +I T 
Sbjct: 357 TIIESS------------LNVLEPAEYRKMFDRLSVF-PPSAHIPTI 390

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 20/130 (15%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 13   ESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEIS 72
            E+R     +   + LE++I + + + ++  +++K L ++ N +E        + +     
Sbjct: 912  EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971

Query: 73   LGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSK 132
            L + +   +   + V  L  E   L   + + + E +++++  + + +   E L     +
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD-KYKHETEQLVSELKE 1030

Query: 133  HIISMEREKE 142
                ++ EKE
Sbjct: 1031 QNTLLKTEKE 1040

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 15/144 (10%), Positives = 44/144 (30%)

Query: 15   RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLG 74
            RK  E   +   L  ++   +  +    +K +   +     EEE K         +  + 
Sbjct: 935  RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994

Query: 75   VVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEGTPSKHI 134
             +             +       +   ++  +E +    L + E    N  +     +  
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054

Query: 135  ISMEREKEGASSESKPERGRQVRK 158
             +ME++    + + + +   +  +
Sbjct: 1055 ETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 30/175 (17%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 4    KTSIKSEMVESRKCSELESKCLELESE-IEKKKTQFEKLEQKFKELEDEKNGIEEELKAL 62
            K  +  +    R  ++ E K L++E+  +E+ K     LE K  +L+ + +   +E K+L
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 63   KREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVS 122
              +    EI+          + + +     E K   + +   + E   L+K    +++  
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH-QTQTE 1006

Query: 123  NEALEGTPSKHIISMER-----EKEGASSESKPERGRQVRKNLAFEEDRSLGKKM 172
             + +E    K+    E+     +++    +++ E   +   + A E   ++ KK+
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 4/160 (2%)

Query: 16   KCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGV 75
            +  +LE +  E E+  +K + +    + K K++ED+   +E++   L +E+K  E  +  
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 76   VDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLKELESRVSNEALEG---TPSK 132
            +      E +    L       ES +   E   +  +K ++ E       LEG      +
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ-ELEKIKRKLEGESSDLHE 1074

Query: 133  HIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKM 172
             I  ++ +     ++   +           E++ S     
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 3/168 (1%)

Query: 7    IKSEMVESRKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREK 66
               +        E+E++  E E   ++ + + +K++Q+  +LE++    E   + L+ EK
Sbjct: 919  AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 67   KGSEISLGVVDLTREGEGDGVAQLVVENKALESGMKRAENE-AESLKKLKELESRVSNEA 125
              ++  +  ++       D   +L  E K LE  +       AE  +K K L        
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK--LKNK 1036

Query: 126  LEGTPSKHIISMEREKEGASSESKPERGRQVRKNLAFEEDRSLGKKMA 173
             E   S+  + +++E++      K +R  +   +   E+   L  ++A
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 15   RKCSELESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLG 74
               SELE +  + E   ++ +    KLE +  +L ++   ++ ++  LK +    E  L 
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 75   VVDLTREGEGDGVAQLVVENKALESGMKRAENEAESLKKLK-ELESRVSN 123
                  E E       + + + LES +   + + ES K  + + E +  +
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.97
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.37
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.5
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.22
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	81.81
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.05

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.97  E-value=0.74  Score=38.59  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhhhhchHHHHHHHHHhhccC
Q 009396           38 FEKLEQKFKELEDEKNGIEEELKALKREKKGS   69 (535)
Q Consensus        38 ~E~LE~K~kel~~EK~~le~El~~lKr~~E~~   69 (535)
                      ++.||+|...++.....|+-|+.+||..+..+
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L   39 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL   39 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777777777777777766544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.37  E-value=1.1  Score=37.29  Aligned_cols=52  Identities=29%  Similarity=0.347  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc
Q 009396           20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI   71 (535)
Q Consensus        20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~   71 (535)
                      +.+++..|-.|...-.-.++.|+++.+.++.....+++|+..|++.+..+|.
T Consensus         7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~   58 (101)
T 3u59_A            7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED   58 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3677888999999999999999999999999999999999999988877753

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.50  E-value=2.7  Score=35.27  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396           25 LELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE   70 (535)
Q Consensus        25 ~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E   70 (535)
                      ..|+.+|++.+-+=..|-+.+.+|+.|+..+..||.+++.+.+.+.
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~   52 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD   52 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            6788888888888888888888888888888888888887766654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.22  E-value=1.7  Score=36.48  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhhhh
Q 009396           21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEISLGVVDLTREGEGDGVAQLVVENKALESG  100 (535)
Q Consensus        21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~~~~vvdlt~~~eee~~~Ql~~eN~~LE~e  100 (535)
                      .+++..|..+...-.-.++.+++++++++.+...+++|+..|.+.+..+|..   +|.+       -.+|---+..||-.
T Consensus         8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e---ld~~-------ee~L~ea~~kLee~   77 (101)
T 3u1c_A            8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS---RDQV-------LEELHKSEDSLLFA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHH
Confidence            6788899999999999999999999999999999999999998877766530   0110       11244344444433


Q ss_pred             -h--hhhhHHHHHHH-HHHHHh
Q 009396          101 -M--KRAENEAESLK-KLKELE  118 (535)
Q Consensus       101 -k--k~ae~E~E~wK-k~~eLE  118 (535)
                       |  ..||+||.+.. |..-||
T Consensus        78 ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           78 EENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence             3  34566777776 555444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=81.81  E-value=2.9  Score=36.10  Aligned_cols=95  Identities=22%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCcc------------cccccccccccCCCcch
Q 009396           21 ESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSEI------------SLGVVDLTREGEGDGVA   88 (535)
Q Consensus        21 e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E~------------~~~vvdlt~~~eee~~~   88 (535)
                      ++.+..|...+++-......|+.++..|..||+.|...|.+=+..+...|-            ..-+-++     .+.+.
T Consensus        19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----~~rle   93 (129)
T 2fxo_A           19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----NKRLE   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            333444444444444444555666666666666655555443322222211            0112222     23344


Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHH-HHHHHhhh
Q 009396           89 QLVVENKALESGMKRAENEAESLK-KLKELESR  120 (535)
Q Consensus        89 Ql~~eN~~LE~ekk~ae~E~E~wK-k~~eLEs~  120 (535)
                      +.-=.|..|..+|++.+.++.-++ ...+||+-
T Consensus        94 eeee~~~~L~~~kkkle~e~~~Lk~~led~e~~  126 (129)
T 2fxo_A           94 DEEEMNAELTAKKRKLEDECSELKRDIDDLELT  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455678899999999999999999 89988864

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.05  E-value=2.7  Score=33.79  Aligned_cols=51  Identities=29%  Similarity=0.395  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchHHHHHHHHHhhccCc
Q 009396           20 LESKCLELESEIEKKKTQFEKLEQKFKELEDEKNGIEEELKALKREKKGSE   70 (535)
Q Consensus        20 ~e~r~~~Le~EI~Kk~~e~E~LE~K~kel~~EK~~le~El~~lKr~~E~~E   70 (535)
                      +.+++..|..+...-...++.+++++++.+.....+++|+..|++....+|
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE   54 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE   54 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999988766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00