Citrus Sinensis ID: 010061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDLVQENALGTDEVQEEMNDNGKEEPESLEVAVNT
cHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHccccccccEEEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEccccccEEEEEEEcHHHHHHHHHcccccccEEEEEccEEEEEEEcccccccccccEEEccccHHHHHccccccEEEEcHHHHHHHHHHccccccccccHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEEEEEcccEEEEEccHHHHHHHHHHHHHHHccccccHHHHccccccHHHHHcccccccccccccccccc
cHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEccccccccHHHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHEEEcccccccccEHEEEEEEcccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccEEEEcccccHHHHHHHccccccccccccEEEEcccccccEEEEEEcHHHHHHHHHccccccEEEEEEccEEEEEEEcccccccccccEEEcHccHHHEHHHccccEEEEcHHHHHHHHHHccccccHcccHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEccccEEEEEccHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHccccccccccccHHHcccc
MVVFVTAGISLLKVGGRIvystcsmnpveNEAVVAEILRKCEgsvelvdvsnevpqlihrpglrkwkvrdkGIWLASHKHVRKFRrigivpsmfpsgsshmdatdiepkhgnvtdvnsdegLQQVEDVLTSADDLeeevsdlplercmrlvphdqnsGAFFIAVLQkvsplpvvqekhinpeekmlprnddppkklqnqdteevngmevdladgtdekdpegsleansidnedgaavepdpltcekvdseetevpvntetksertggkrklqiqgkwkgidpviffndetIINSIktfygiddsfqlsgqlvsrngdtnrvKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFerqtsregnsapcsfrisseglpvilpyITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSkggealsnpiqidasTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEkgdlvqenalgtdEVQEEMndngkeepesLEVAVNT
MVVFVTAgisllkvggrIVYSTCSMNPVENEAVVAEILRKCEGSVelvdvsnevpqlihrpglrkwkvrdKGIWLashkhvrkfrriGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKhinpeekmlprnddppkklqnqdteevNGMEVDLADGTDEKDPEGSLeansidnedgaavepdpltcekvdseetevpvntetksertggkrklqiqgkwkgidpvIFFNDETIINSIKTFYGIDDSFQLSgqlvsrngdtnrvKRIYYVSKsvkdaldlnfrvgQQLKITSVGLKMFerqtsregnsapcsfriSSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDLVQENALGTDEVQEemndngkeepeslevavnt
MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQellerllmrleieKGDLVQENALGTDEVQEEMNDNGKEEPESLEVAVNT
*VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPS***************************************************LERCMRLVPHDQNSGAFFIAVLQKVSPLPVV************************************************************************************************LQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFE***********CSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDLV*******************************
MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIE**************************DLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV*************************************************************************************************************KGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKF**************LMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMR****************************************
MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEK*************************QIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ********PCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDLVQENALGTDE**********************
MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRR***VP*****************************************DDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPL********************************************************************************************************KWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEK***********************************
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SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCxxxxxxxxxxxxxxxxxxxxxNALGTDEVQEEMNDNGKEEPESLEVAVNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query519 2.2.26 [Sep-21-2011]
Q28E61798 tRNA (cytosine(34)-C(5))- yes no 0.836 0.543 0.288 6e-45
Q1HFZ0757 tRNA (cytosine(34)-C(5))- yes no 0.784 0.537 0.296 7e-43
Q5ZLV4796 tRNA (cytosine(34)-C(5))- yes no 0.730 0.476 0.289 1e-42
Q08J23767 tRNA (cytosine(34)-C(5))- yes no 0.791 0.535 0.296 1e-42
Q4V7N2698 tRNA (cytosine(34)-C(5))- N/A no 0.766 0.570 0.283 1e-41
O13935685 Multisite-specific tRNA:( yes no 0.672 0.509 0.278 5e-33
Q9HGQ2688 Multisite-specific tRNA:( no no 0.712 0.537 0.261 7e-28
Q9W4M9746 tRNA (cytosine(34)-C(5))- yes no 0.524 0.364 0.276 2e-25
P38205684 Multisite-specific tRNA:( yes no 0.225 0.171 0.354 2e-19
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis GN=nsun2 PE=2 SV=1 Back     alignment and function desciption
 Score =  182 bits (462), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 254/531 (47%), Gaps = 97/531 (18%)

Query: 2   VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRP 61
           +   T G+  L  GGR+VYSTCS+NPVE+EAV+A +L K EGS+EL DV++E+P L   P
Sbjct: 302 IRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMP 361

Query: 62  GLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 120
           G+ +WKV  K G W    + +   R   I P+MFP            PK           
Sbjct: 362 GITQWKVMTKEGHWYEKWEDIPTSRHTQIRPTMFP------------PKD---------- 399

Query: 121 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHIN 180
                          EE++  + L RCMR++PH QN+G FF+AVL K +P+P       N
Sbjct: 400 ---------------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP------WN 438

Query: 181 PEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPD 240
             +  L R   PP               V   D +    PE  L     +N  G A EP 
Sbjct: 439 KRQPKLQRR--PP---------------VSACDASIAVAPE--LVKAVTENSAGMADEP- 478

Query: 241 PLTCEKVDSEETEV-PVNTETKSERTG------GKRKLQIQGKWKGIDPVIFFN-DETII 292
                 VD+E  E  P   ++ S +T         +K+++ G  +  DP +F + D+ I 
Sbjct: 479 -----AVDTENGETKPCTNQSDSSKTDIVCCPPPSKKMKLFGFKE--DPFVFVSEDDPIF 531

Query: 293 NSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGL 352
           + I+TFY +D SF     L++R  +  + +++Y VSK +++ L  N    +++K+ + G+
Sbjct: 532 DPIQTFYALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLHN---SEKMKVINTGI 586

Query: 353 KMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVD 412
           K+  R  + +G    C++R++ EG+  + P+I  +I+  S+ D K LL  +    + F  
Sbjct: 587 KVLCR--NNDGEQYGCAYRLAQEGIYTLYPFINARIVTVSIEDIKVLLTQENPFLSKF-S 643

Query: 413 AEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQEL 472
            E  ++A+   MG  V+      +    P  +    +  G W+G+ S+   V   +    
Sbjct: 644 KETQKQANNFDMGSIVLKYEPDPQ---EPETLQCPIVLCG-WRGKTSIRSFVPKNERLHY 699

Query: 473 LERLLMRLEIEKGDLVQE-----NALGTDEVQEEMNDNGKEEPESLEVAVN 518
           L  + + +  EK +++++      A   + + E+M+ +G +E ES E++ N
Sbjct: 700 LRMMGVEVFKEKAEVLEKKPVEGKACDEEHIDEKMDIDGAKE-ESKELSGN 749
RNA methyltransferase that methylates tRNAs, and possibly RNA polymerase III transcripts. Methylates cytosine to 5-methylcytosine (m5C) at position 34 of intron-containing tRNA(Leu)(CAA) precursors.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 3
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus GN=NSUN2 PE=2 SV=1 Back     alignment and function description
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2 Back     alignment and function description
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis GN=nsun2 PE=2 SV=1 Back     alignment and function description
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm4b PE=3 SV=2 Back     alignment and function description
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm4a PE=1 SV=3 Back     alignment and function description
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila melanogaster GN=CG6133 PE=2 SV=1 Back     alignment and function description
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCL1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
255581738 843 conserved hypothetical protein [Ricinus 0.969 0.596 0.667 0.0
297741823 837 unnamed protein product [Vitis vinifera] 0.973 0.603 0.638 0.0
147811154 906 hypothetical protein VITISV_039256 [Viti 0.961 0.550 0.644 0.0
359480502 834 PREDICTED: tRNA (cytosine(34)-C(5))-meth 0.967 0.601 0.637 1e-179
224093730 799 predicted protein [Populus trichocarpa] 0.907 0.589 0.631 1e-177
356525455 820 PREDICTED: tRNA (cytosine(34)-C(5))-meth 0.915 0.579 0.595 1e-164
356538146 810 PREDICTED: tRNA (cytosine(34)-C(5))-meth 0.934 0.598 0.582 1e-161
449496414 812 PREDICTED: tRNA (cytosine(34)-C(5))-meth 0.870 0.556 0.58 1e-158
449451413 812 PREDICTED: tRNA (cytosine(34)-C(5))-meth 0.870 0.556 0.58 1e-158
297825119 838 hypothetical protein ARALYDRAFT_320078 [ 0.895 0.554 0.540 1e-142
>gi|255581738|ref|XP_002531671.1| conserved hypothetical protein [Ricinus communis] gi|223528702|gb|EEF30715.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/514 (66%), Positives = 407/514 (79%), Gaps = 11/514 (2%)

Query: 8   GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWK 67
           G+SLLKVGGR+VYSTCSMNPVENEAVVAEILRKC GSVEL++VS+E+PQL+ RPGLRKWK
Sbjct: 335 GMSLLKVGGRMVYSTCSMNPVENEAVVAEILRKCGGSVELLNVSSELPQLVRRPGLRKWK 394

Query: 68  VRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVED 127
           VRDKGIWL+SHK V KFRR GI+PSMFPSG S++   + + KH N  +  S++  + +ED
Sbjct: 395 VRDKGIWLSSHKDVSKFRRYGILPSMFPSGRSYVAPAESDHKHENGGNKISED--EPMED 452

Query: 128 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEK-ML 186
            + S +D  EEVSDLPLERCMR+VPHDQNSGAFFIAV  K+SPLPV+ EK   P  +  L
Sbjct: 453 PMAS-EDSNEEVSDLPLERCMRIVPHDQNSGAFFIAVFHKLSPLPVIPEK---PSRRGNL 508

Query: 187 PRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNE-DGAAVEPDPL-TC 244
            R  +P +K  +QDTE  NG+E+   +   E+ PE + EA+ I+NE D  A+EPD   TC
Sbjct: 509 NRKHEPQEKSLDQDTEGNNGVELKSEEAAAERFPEAASEADLIENELDSTALEPDSCNTC 568

Query: 245 EKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDS 304
            + +S + +  VN ET+S    GKRKLQIQGKWKG+DPV+FF DE IINSIK FYGID+S
Sbjct: 569 GENESGKAQALVNGETQSSNAVGKRKLQIQGKWKGVDPVLFFKDEAIINSIKAFYGIDES 628

Query: 305 FQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 364
           F  +G L+SRN D N VKRIYYVSKSVKD L+LN  VGQQLKI SVGLKMFERQTSREG 
Sbjct: 629 FPFNGHLISRNNDNNHVKRIYYVSKSVKDVLELNLLVGQQLKIASVGLKMFERQTSREGT 688

Query: 365 SAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMM 424
           SAPCSFRISSEGLPVILP+ITKQILYASLVDFKHLLQYK++K+ DFVDAEFGEKASKL+M
Sbjct: 689 SAPCSFRISSEGLPVILPHITKQILYASLVDFKHLLQYKSVKYTDFVDAEFGEKASKLLM 748

Query: 425 GCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEK 484
           GCCVIVL + G+  S+PIQ+DASTIAIGCWKGR+SLSVMVTAIDCQELLERLL R++  +
Sbjct: 749 GCCVIVL-RDGKIFSDPIQVDASTIAIGCWKGRSSLSVMVTAIDCQELLERLLARMDTGE 807

Query: 485 GDLVQENALGTDEVQEEMNDNGK-EEPESLEVAV 517
           G  VQE+     E Q++MN   K E+ E+ E A 
Sbjct: 808 GSSVQESIAEACEAQDDMNGIEKVEDTETTEQAT 841

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297741823|emb|CBI33136.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147811154|emb|CAN70164.1| hypothetical protein VITISV_039256 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480502|ref|XP_002271053.2| PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093730|ref|XP_002309966.1| predicted protein [Populus trichocarpa] gi|222852869|gb|EEE90416.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525455|ref|XP_003531340.1| PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|356538146|ref|XP_003537565.1| PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|449496414|ref|XP_004160128.1| PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449451413|ref|XP_004143456.1| PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297825119|ref|XP_002880442.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp. lyrata] gi|297326281|gb|EFH56701.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
TAIR|locus:2041213808 AT2G22400 [Arabidopsis thalian 0.868 0.558 0.565 3.2e-129
TAIR|locus:2140094783 AT4G40000 [Arabidopsis thalian 0.657 0.435 0.506 1.3e-82
ZFIN|ZDB-GENE-030131-4017766 nsun2 "NOL1/NOP2/Sun domain fa 0.177 0.120 0.494 1.4e-41
UNIPROTKB|G3V1R4531 NSUN2 "NOL1/NOP2/Sun domain fa 0.173 0.169 0.516 1.9e-40
MGI|MGI:107252757 Nsun2 "NOL1/NOP2/Sun domain fa 0.173 0.118 0.516 2.7e-40
UNIPROTKB|Q08J23767 NSUN2 "tRNA (cytosine(34)-C(5) 0.173 0.117 0.516 1.7e-39
UNIPROTKB|F1MK61777 NSUN2 "Uncharacterized protein 0.173 0.115 0.527 4.6e-37
POMBASE|SPAC23C4.17685 trm402 "tRNA (cytosine-5-)-met 0.192 0.145 0.45 1.4e-33
UNIPROTKB|D4A3S8782 Nsun2 "NOL1/NOP2/Sun domain fa 0.173 0.115 0.516 8.1e-33
UNIPROTKB|F1NJM1793 NSUN2 "tRNA (cytosine(34)-C(5) 0.173 0.113 0.527 2.1e-32
TAIR|locus:2041213 AT2G22400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 268/474 (56%), Positives = 342/474 (72%)

Query:     2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRP 61
             ++    G+SLLKVGG+++YSTCSMNPVE+EAVVAEILR+C  SVEL+DVS+++P+LI RP
Sbjct:   320 IILAMRGLSLLKVGGKMIYSTCSMNPVEDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379

Query:    62 GLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNS-DE 120
             GL+ WKVRDKG W  S+K V + RR G++ SMFPSG    D+T+   K+ N  DVN  ++
Sbjct:   380 GLKAWKVRDKGGWFTSYKDVPQNRRGGVLVSMFPSGKYLKDSTETTEKNEN-GDVNGCED 438

Query:   121 GLQQVEDVLTSA--DDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKH 178
             GL++ +  +  A  ++  EEVSDLPLERCMR++PHDQN+GAFFIAVLQK SPLP  QEK 
Sbjct:   439 GLKETDISVVDATPEEQAEEVSDLPLERCMRIIPHDQNTGAFFIAVLQKKSPLPEFQEKP 498

Query:   179 INPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANS-IDNEDGAAV 237
              N +     ++ D  +K  ++  E V  + VD A   DE   E  +EA+S I+  D  ++
Sbjct:   499 -NTKRNSTAKSTDSTEKSPSK--ESV--VTVD-AGVPDESAVEKVIEADSNIEKND--SL 550

Query:   238 EPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKT 297
             EP     EK  +E   +  + E  S   GGKRK+ +QGKWKG DPV+F  DET+IN IK 
Sbjct:   551 EP-----EKKITEGESITEDKEANSSNAGGKRKVPMQGKWKGFDPVVFVKDETVINGIKE 605

Query:   298 FYGI-DDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFE 356
             FYGI D+SF L G LV+RN DT+ VKRIYYVSKSVK+ L LNF VGQQLKI SVGLKMFE
Sbjct:   606 FYGIKDESFPLHGHLVARNTDTSSVKRIYYVSKSVKEVLQLNFAVGQQLKIASVGLKMFE 665

Query:   357 RQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFG 416
             RQ+++EG+S  C FRISSEGLPVILPYITKQ+LY  + DFK LLQ K+IKF DFV+ +  
Sbjct:   666 RQSAKEGSSTLCPFRISSEGLPVILPYITKQVLYTPMADFKLLLQDKSIKFHDFVNPQLA 725

Query:   417 EKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQ 470
             +KA+ L+MG CV++LS G E    P++ DASTIAI CW+G+ASL+VM T  DCQ
Sbjct:   726 QKATDLVMGSCVVILSDG-EV---PVKADASTIAISCWRGKASLAVMATVADCQ 775
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA
TAIR|locus:2140094 AT4G40000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4017 nsun2 "NOL1/NOP2/Sun domain family, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1R4 NSUN2 "NOL1/NOP2/Sun domain family, member 2, isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107252 Nsun2 "NOL1/NOP2/Sun domain family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q08J23 NSUN2 "tRNA (cytosine(34)-C(5))-methyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MK61 NSUN2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPAC23C4.17 trm402 "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3S8 Nsun2 "NOL1/NOP2/Sun domain family, member 2 (Predicted)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJM1 NSUN2 "tRNA (cytosine(34)-C(5))-methyltransferase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00004404001
SubName- Full=Chromosome undetermined scaffold_690, whole genome shotgun sequence; (823 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
   •• • 0.744
GSVIVG00032354001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (252 aa)
   •• • 0.741
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •  • 0.729
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •  ••0.705
GSVIVG00021478001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (316 aa)
   •• • 0.695
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •  • 0.690
GSVIVG00028481001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)
   •    0.676
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.675
GSVIVG00021672001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)
   •  • 0.671
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.670

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
COG0144355 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases 1e-10
TIGR00446264 TIGR00446, nop2p, NOL1/NOP2/sun family putative RN 7e-09
pfam01189277 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family 2e-07
PRK14902444 PRK14902, PRK14902, 16S rRNA methyltransferase B; 6e-07
PRK14901434 PRK14901, PRK14901, 16S rRNA methyltransferase B; 2e-06
PRK14904445 PRK14904, PRK14904, 16S rRNA methyltransferase B; 4e-04
COG0144355 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases 9e-04
PRK10901427 PRK10901, PRK10901, 16S rRNA methyltransferase B; 0.001
TIGR00563426 TIGR00563, rsmB, ribosomal RNA small subunit methy 0.002
PRK11933470 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf 0.003
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 7   AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
           A + LLK GG +VYSTCS+ P ENE VV   L +     EL  V      L    G    
Sbjct: 273 AALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD-FELEPVRLPWGPLFEGLGSELG 331

Query: 67  KVR 69
           K R
Sbjct: 332 KTR 334

Length = 355
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase Back     alignment and domain information
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family Back     alignment and domain information
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB Back     alignment and domain information
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 519
PRK11933470 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; 99.88
KOG2198375 consensus tRNA cytosine-5-methylases and related e 99.8
COG0144355 Sun tRNA and rRNA cytosine-C5-methylases [Translat 99.76
PF01189283 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR 99.75
TIGR00446264 nop2p NOL1/NOP2/sun family putative RNA methylase. 99.69
KOG1122460 consensus tRNA and rRNA cytosine-C5-methylase (nuc 99.64
PRK14902444 16S rRNA methyltransferase B; Provisional 99.54
PRK14904445 16S rRNA methyltransferase B; Provisional 99.53
PRK14903431 16S rRNA methyltransferase B; Provisional 99.53
TIGR00563426 rsmB ribosomal RNA small subunit methyltransferase 99.53
PRK10901427 16S rRNA methyltransferase B; Provisional 99.46
PRK14901434 16S rRNA methyltransferase B; Provisional 99.42
KOG2360413 consensus Proliferation-associated nucleolar prote 98.7
PRK15128396 23S rRNA m(5)C1962 methyltransferase; Provisional 92.56
PF13636102 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome 92.03
PRK00377198 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; 89.66
COG1092393 Predicted SAM-dependent methyltransferases [Genera 86.1
TIGR00537179 hemK_rel_arch HemK-related putative methylase. The 83.08
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Back     alignment and domain information 
Probab=99.88  E-value=6.7e-22  Score=213.20  Aligned_cols=206  Identities=20%  Similarity=0.314  Sum_probs=142.8

Q ss_pred             HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhh
Q 010061            2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV   81 (519)
Q Consensus         2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v   81 (519)
                      .+||.+|+.+|||||+|||||||++|+|||+||+++|+++++.++++++...+++.                        
T Consensus       222 ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~------------------------  277 (470)
T PRK11933        222 RELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGA------------------------  277 (470)
T ss_pred             HHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccccc------------------------
Confidence            47999999999999999999999999999999999999998656666553221110                        


Q ss_pred             hhhhhccccCCCCCCCCCCCCCCCCCCCCCCccccCCccccchhhcccccccchhhhhccccccceeeecccccCCCceE
Q 010061           82 RKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFF  161 (519)
Q Consensus        82 ~~~~~~~i~~SMFpp~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~e~~~~~lercmRi~PH~qdTGGFF  161 (519)
                                   ++                                            .....+|+|+|||.++|+|||
T Consensus       278 -------------~~--------------------------------------------~~~~~~~~r~~P~~~~~dGfF  300 (470)
T PRK11933        278 -------------EK--------------------------------------------ALTEEGFLHVFPQIYDSEGFF  300 (470)
T ss_pred             -------------cc--------------------------------------------ccCCCCeEEECCCCCCCccee
Confidence                         00                                            001357999999999999999


Q ss_pred             EEEEEecCCCCccccccCCcccccCCCCCCCCccccCCcccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCC
Q 010061          162 IAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDP  241 (519)
Q Consensus       162 IAvl~K~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  241 (519)
                      ||+|+|.+.......     ..                                                          
T Consensus       301 iA~lrk~~~~~~~~~-----~~----------------------------------------------------------  317 (470)
T PRK11933        301 VARLRKTASVPRLPA-----PK----------------------------------------------------------  317 (470)
T ss_pred             eEEEEecCCcccccc-----cc----------------------------------------------------------
Confidence            999999754211000     00                                                          


Q ss_pred             CccccCCCcccccCCCcccccccCCCccccccCCCccccCCcccCC--ChHHHHHHHHHhCCCCCCCCCCceEeecCCCC
Q 010061          242 LTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTN  319 (519)
Q Consensus       242 ~~~~~~~~e~~~~~~~~~~~~~~~~~Krk~~~~~~fk~~dPf~f~~--d~~~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g~  319 (519)
                                            ...+|        +    |+.-+.  ..+.|....+-|+++.  +....++.++    
T Consensus       318 ----------------------~~~~k--------~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~----  357 (470)
T PRK11933        318 ----------------------YKVGK--------F----PFTPAKDKEAQEIRQAAASVGLSW--PENLRLWQRD----  357 (470)
T ss_pred             ----------------------ccccc--------c----cccccchhHHHHHHHHHHhcCCCC--CCCCcEEEEC----
Confidence                                  00000        0    000000  1233455455567753  2233465554    


Q ss_pred             cceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHH
Q 010061          320 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHL  399 (519)
Q Consensus       320 ~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~L  399 (519)
                        ..||++.......+       .+|||++.|+.+-+-.+        -+|..++.....+.+.-..+++.++.++....
T Consensus       358 --~~l~~~p~~~~~~~-------~~l~v~r~Gl~lg~~kk--------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Y  420 (470)
T PRK11933        358 --KEVWLFPAGIEPLI-------GKVRFSRIGIKLAETHK--------KGYRWQHEAVIALASPDNANAFELTPQEAEEW  420 (470)
T ss_pred             --CEEEEeccccchhh-------cCCeEeeeceeEeeeec--------CCeeEcHHHHHHhCcccccceEecCHHHHHHH
Confidence              35999998754432       58999999999988764        48999999888888776778999999999999


Q ss_pred             hhcCCCCcc
Q 010061          400 LQYKTIKFA  408 (519)
Q Consensus       400 L~~~~~~~~  408 (519)
                      |....+...
T Consensus       421 l~ge~l~~~  429 (470)
T PRK11933        421 YMGRDIYPQ  429 (470)
T ss_pred             HCCCCccCC
Confidence            998776543

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins Back     alignment and domain information
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase Back     alignment and domain information
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] Back     alignment and domain information
>PRK14902 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>PRK14904 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>PRK14903 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB Back     alignment and domain information
>PRK10901 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>PRK14901 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional Back     alignment and domain information
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A Back     alignment and domain information
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Back     alignment and domain information
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] Back     alignment and domain information
>TIGR00537 hemK_rel_arch HemK-related putative methylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
3a4t_A274 Crystal Structure Of Atrm4 From M.Jannaschii With S 5e-04
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 4   FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV-SNEVPQLIHRPG 62
            +  GI LLK  G +VYSTCSM   ENE V+  IL+K    VEL+ + +NE   +  + G
Sbjct: 193 LIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK-RNDVELIIIKANEFKGINIKEG 251
Query: 63  LRKWKVR 69
             K  +R
Sbjct: 252 YIKGTLR 258

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
2frx_A479 Hypothetical protein YEBU; rossmann-type S-adenosy 8e-14
2frx_A479 Hypothetical protein YEBU; rossmann-type S-adenosy 4e-05
2b9e_A309 NOL1/NOP2/SUN domain family, member 5 isoform 2; m 6e-13
1ixk_A315 Methyltransferase; open beta sheet; 1.90A {Pyrococ 7e-13
3m6w_A464 RRNA methylase; rRNA methyltransferase, 5-methylcy 2e-12
3m4x_A456 NOL1/NOP2/SUN family protein; mtase domain, PUA do 7e-12
3ajd_A274 Putative methyltransferase MJ0026; tRNA, M5C, ross 2e-10
2yxl_A450 PH0851 protein, 450AA long hypothetical FMU protei 2e-09
1sqg_A429 SUN protein, FMU protein; rossmann-fold, mixed bet 1e-08
1sqg_A429 SUN protein, FMU protein; rossmann-fold, mixed bet 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 Back     alignment and structure
 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 7   AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
           +    L+ GG +VYSTC++N  ENEAV   +      +VE + + +  P          +
Sbjct: 231 SAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGF 290

Query: 67  KVRDKGIWLASHKH------VRKFRRIGIVPS 92
            +    ++     +      V + R+   +P+
Sbjct: 291 -LH---VF--PQIYDCEGFFVARLRKTQAIPA 316
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 Back     alignment and structure
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 Back     alignment and structure
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 Back     alignment and structure
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 Back     alignment and structure
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 Back     alignment and structure
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 Back     alignment and structure
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 Back     alignment and structure
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
2frx_A479 Hypothetical protein YEBU; rossmann-type S-adenosy 99.88
3m4x_A456 NOL1/NOP2/SUN family protein; mtase domain, PUA do 99.83
3m6w_A464 RRNA methylase; rRNA methyltransferase, 5-methylcy 99.79
4fzv_A359 Putative methyltransferase NSUN4; mterf fold, meth 99.77
2b9e_A309 NOL1/NOP2/SUN domain family, member 5 isoform 2; m 99.72
1ixk_A315 Methyltransferase; open beta sheet; 1.90A {Pyrococ 99.7
3ajd_A274 Putative methyltransferase MJ0026; tRNA, M5C, ross 99.58
2yxl_A450 PH0851 protein, 450AA long hypothetical FMU protei 99.49
1sqg_A429 SUN protein, FMU protein; rossmann-fold, mixed bet 99.39
3id6_C232 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 95.88
4dmg_A393 Putative uncharacterized protein TTHA1493; rRNA, m 95.44
1wxx_A382 TT1595, hypothetical protein TTHA1280; thermus the 94.37
2as0_A396 Hypothetical protein PH1915; RNA methyltransferase 93.1
3c0k_A396 UPF0064 protein YCCW; PUA domain, adoMet dependent 91.85
2dul_A378 N(2),N(2)-dimethylguanosine tRNA methyltransferas; 87.41
1sqw_A188 Saccharomyces cerevisiae NIP7P homolog; PUA, unkno 85.1
3v97_A703 Ribosomal RNA large subunit methyltransferase L; Y 84.73
3njr_A204 Precorrin-6Y methylase; methyltransferase, decarbo 83.86
2p38_A166 Protein involved in ribosomal biogenesis; two alph 83.55
2frn_A278 Hypothetical protein PH0793; structural genomics, 82.71
2bm8_A236 Cephalosporin hydroxylase CMCI; cephamycin biosynt 82.7
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 82.34
1inl_A296 Spermidine synthase; beta-barrel, rossman fold, st 82.06
3e05_A204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 81.11
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Back     alignment and structure
Probab=99.88  E-value=2.4e-22  Score=215.70  Aligned_cols=218  Identities=19%  Similarity=0.300  Sum_probs=158.9

Q ss_pred             HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhhh
Q 010061            3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVR   82 (519)
Q Consensus         3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~   82 (519)
                      +||..|+.+|||||+|||||||++|+|||+||+++|+++++.++++++...+|+      ...                 
T Consensus       227 ~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~------~~~-----------------  283 (479)
T 2frx_A          227 ELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPG------ANK-----------------  283 (479)
T ss_dssp             HHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTSSTT------GGG-----------------
T ss_pred             HHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCceecccccccccc------ccc-----------------
Confidence            689999999999999999999999999999999999999876677665432221      100                 


Q ss_pred             hhhhccccCCCCCCCCCCCCCCCCCCCCCCccccCCccccchhhcccccccchhhhhccccccceeeecccccCCCceEE
Q 010061           83 KFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFI  162 (519)
Q Consensus        83 ~~~~~~i~~SMFpp~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~e~~~~~lercmRi~PH~qdTGGFFI  162 (519)
                                                                                .+..+.|+|+|||.++|+||||
T Consensus       284 ----------------------------------------------------------~~~~~g~~r~~P~~~~~dGfF~  305 (479)
T 2frx_A          284 ----------------------------------------------------------ALTEEGFLHVFPQIYDCEGFFV  305 (479)
T ss_dssp             ----------------------------------------------------------GBCTTSCEEECTTTTTSCCEEE
T ss_pred             ----------------------------------------------------------ccccCCeEEECCCCCCcCccEE
Confidence                                                                      0113578999999999999999


Q ss_pred             EEEEecCCCCccccccCCcccccCCCCCCCCccccCCcccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCC
Q 010061          163 AVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPL  242 (519)
Q Consensus       163 Avl~K~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  242 (519)
                      |+|+|.++.+..+.                                                                  
T Consensus       306 A~l~k~~~~~~~~~------------------------------------------------------------------  319 (479)
T 2frx_A          306 ARLRKTQAIPALPA------------------------------------------------------------------  319 (479)
T ss_dssp             EEEEECSCCCCCCC------------------------------------------------------------------
T ss_pred             EEEEEcCCCCCccc------------------------------------------------------------------
Confidence            99999764322000                                                                  


Q ss_pred             ccccCCCcccccCCCcccccccCCCccccccCCCccccCCcccCC--ChHHHHHHHHHhCCCCCCCCCCceEeecCCCCc
Q 010061          243 TCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNR  320 (519)
Q Consensus       243 ~~~~~~~e~~~~~~~~~~~~~~~~~Krk~~~~~~fk~~dPf~f~~--d~~~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g~~  320 (519)
                                           + ..++     ++    .||..+.  ..+.++.+.++|+++..  .+..|+.|+     
T Consensus       320 ---------------------~-~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----  361 (479)
T 2frx_A          320 ---------------------P-KYKV-----GN----FPFSPVKDREAGQIRQAATGVGLNWD--ENLRLWQRD-----  361 (479)
T ss_dssp             ---------------------C-CCCC-----CC----CSCEECCHHHHHHHHHHHHTTTBCCC--TTEEEEESS-----
T ss_pred             ---------------------c-cccc-----cc----CCccccchhhHHHHHHHHHHcCCCCC--CCceEEEEC-----
Confidence                                 0 0000     00    1333332  23456778888998633  334677774     


Q ss_pred             ceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHHh
Q 010061          321 VKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLL  400 (519)
Q Consensus       321 ~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~LL  400 (519)
                       +.||++.....+++       .+|||++.|+++++..+        -+||.++.....+.+.-.++++.++.+++..+|
T Consensus       362 -~~~~~~p~~~~~~~-------~~lr~~r~G~~lg~~kk--------~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL  425 (479)
T 2frx_A          362 -KELWLFPVGIEALI-------GKVRFSRLGIKLAETHN--------KGYRWQHEAVIALASPDNMNAFELTPQEAEEWY  425 (479)
T ss_dssp             -SEEEEEEHHHHTTB-------TTBCCSEESEEEEEEET--------TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHH
T ss_pred             -CEEEEeccccchhc-------cCcEEEecceEEEEEec--------CCceEcHHHHHhcchhhcCcEEECCHHHHHHHh
Confidence             46999999776554       57999999999999764        489999999999988878889999999999999


Q ss_pred             hcCCCCcccCCChHHHHHHhcCCCceEEEEEe
Q 010061          401 QYKTIKFADFVDAEFGEKASKLMMGCCVIVLS  432 (519)
Q Consensus       401 ~~~~~~~~~~~d~e~~e~~~~l~~Gc~Vl~~~  432 (519)
                      ....+....-           ..-|-++|.++
T Consensus       426 ~Ge~i~~~~~-----------~~~G~vlv~~~  446 (479)
T 2frx_A          426 RGRDVYPQAA-----------PVADDVLVTFQ  446 (479)
T ss_dssp             TTCCCCCSSC-----------CSCSEEEEEET
T ss_pred             cCCCCcCCCC-----------CCCCEEEEEEC
Confidence            9887765321           12476766665
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Back     alignment and structure
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Back     alignment and structure
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* Back     alignment and structure
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Back     alignment and structure
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Back     alignment and structure
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Back     alignment and structure
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Back     alignment and structure
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* Back     alignment and structure
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Back     alignment and structure
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Back     alignment and structure
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Back     alignment and structure
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Back     alignment and structure
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Back     alignment and structure
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A Back     alignment and structure
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Back     alignment and structure
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Back     alignment and structure
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} Back     alignment and structure
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* Back     alignment and structure
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 519
d1ixka_313 c.66.1.38 (A:) Hypothetical methyltransferase PH13 1e-10
d1ixka_313 c.66.1.38 (A:) Hypothetical methyltransferase PH13 2e-05
d2b9ea1293 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) 1e-07
d2b9ea1293 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) 5e-07
d1sqga2284 c.66.1.38 (A:145-428) Ribosomal RNA small subunit 1e-06
d1sqga2284 c.66.1.38 (A:145-428) Ribosomal RNA small subunit 4e-06
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 1   MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHR 60
            +  +  G+ +LK GG +VYSTCS+ P ENE V+   L   +  VEL+ +    P L + 
Sbjct: 223 QMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALTNP 280

Query: 61  PGLRKWKVRDKGIWLASHKH------VRKFRRI 87
            G+   +       L    H      + K R++
Sbjct: 281 FGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 313
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 Back     information, alignment and structure
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 Back     information, alignment and structure
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
d1ixka_313 Hypothetical methyltransferase PH1374 {Archaeon Py 99.84
d2b9ea1293 NOL1R {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1sqga2284 Ribosomal RNA small subunit methyltransferase B, R 99.79
d1wxxa2318 Hypothetical protein TTHA1280, middle and C-termin 96.97
d2as0a2324 Hypothetical protein PH1915, middle and C-terminal 95.98
d2b78a2317 Hypothetical protein SMu776, middle and C-terminal 95.59
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.1e-21  Score=197.75  Aligned_cols=52  Identities=40%  Similarity=0.680  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCC
Q 010061            2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP   55 (519)
Q Consensus         2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp   55 (519)
                      .+||.+|+++|||||+|||||||++|+|||.||.++|++++  ++++++....|
T Consensus       224 ~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~--~~~~~~~~~~~  275 (313)
T d1ixka_         224 MRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEP  275 (313)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS--EEEECCCSSEE
T ss_pred             HHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC--CEEeecccCCc
Confidence            47999999999999999999999999999999999999875  88888764433
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure