Citrus Sinensis ID: 010070
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | 2.2.26 [Sep-21-2011] | |||||||
| P05466 | 520 | 3-phosphoshikimate 1-carb | yes | no | 0.994 | 0.992 | 0.778 | 0.0 | |
| P17688 | 516 | 3-phosphoshikimate 1-carb | N/A | no | 0.990 | 0.996 | 0.790 | 0.0 | |
| P11043 | 516 | 3-phosphoshikimate 1-carb | N/A | no | 0.994 | 1.0 | 0.784 | 0.0 | |
| P10748 | 520 | 3-phosphoshikimate 1-carb | N/A | no | 0.994 | 0.992 | 0.768 | 0.0 | |
| P23981 | 518 | 3-phosphoshikimate 1-carb | N/A | no | 0.990 | 0.992 | 0.760 | 0.0 | |
| P23281 | 338 | 3-phosphoshikimate 1-carb | N/A | no | 0.651 | 1.0 | 0.866 | 1e-166 | |
| A6Q7Q0 | 427 | 3-phosphoshikimate 1-carb | yes | no | 0.815 | 0.990 | 0.548 | 1e-130 | |
| C3LN54 | 426 | 3-phosphoshikimate 1-carb | yes | no | 0.815 | 0.992 | 0.562 | 1e-130 | |
| Q9KRB0 | 426 | 3-phosphoshikimate 1-carb | yes | no | 0.815 | 0.992 | 0.562 | 1e-130 | |
| A1STZ0 | 428 | 3-phosphoshikimate 1-carb | yes | no | 0.818 | 0.992 | 0.544 | 1e-129 |
| >sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3 | Back alignment and function desciption |
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Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/523 (77%), Positives = 457/523 (87%), Gaps = 7/523 (1%)
Query: 1 MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRG----CSSSWGLRYNDRLGNN 56
MAQVS+ICNG+QN + +N +K + KS ++S ++Q SSSWGL+ +
Sbjct: 1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60
Query: 57 NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
+ +R ++ +SV TAEK ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct: 61 SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117
Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
VDNLL+S+DI++MLDALK+LGLNVE D RA+VEGCGG+FP + +IEL+LGNAG
Sbjct: 118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177
Query: 177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct: 178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237
Query: 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFG 296
GGLPGGKVKLSG +SSQYLTALLM+APLALG+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct: 238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297
Query: 297 VFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ 356
V VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF+AGAA+TG TVTVEGCGT+SLQ
Sbjct: 298 VSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQ 357
Query: 357 GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVAL 416
GDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTLAVVAL
Sbjct: 358 GDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTLAVVAL 417
Query: 417 FADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYD 476
FADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP+K+K A IDTYD
Sbjct: 418 FADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPKKVKTAEIDTYD 477
Query: 477 DHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519
DHRMAMAFSLAACADVP+TI DP CTRKTFPDYF VL+ +TK
Sbjct: 478 DHRMAMAFSLAACADVPITINDPGCTRKTFPDYFQVLERITKH 520
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9 |
| >sp|P17688|AROA_BRANA 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1 | Back alignment and function description |
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| >sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1 | Back alignment and function description |
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| >sp|P10748|AROA_SOLLC 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
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| >sp|P23981|AROA1_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P23281|AROA2_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A6Q7Q0|AROA_SULNB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=aroA PE=3 SV=1 | Back alignment and function description |
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| >sp|C3LN54|AROA_VIBCM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9KRB0|AROA_VIBCH 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=aroA PE=1 SV=1 | Back alignment and function description |
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| >sp|A1STZ0|AROA_PSYIN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Psychromonas ingrahamii (strain 37) GN=aroA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| 76782198 | 520 | putative 5-enolpyruvylshikimate 3-phosph | 1.0 | 0.998 | 0.811 | 0.0 | |
| 157142998 | 521 | 5-enolpyruvylshikimate-3-phosphate synth | 0.994 | 0.990 | 0.824 | 0.0 | |
| 15225450 | 520 | 3-phosphoshikimate 1-carboxyvinyltransfe | 0.994 | 0.992 | 0.778 | 0.0 | |
| 164564335 | 521 | 5-enolpyruvylshikimate-3-phosphate synth | 0.994 | 0.990 | 0.818 | 0.0 | |
| 295790 | 520 | EPSP [Arabidopsis thaliana] | 0.994 | 0.992 | 0.774 | 0.0 | |
| 18251236 | 518 | 5-enolpyruvylshikimate-3-phosphate synth | 0.994 | 0.996 | 0.794 | 0.0 | |
| 55740769 | 519 | 5-enolpyruvylshikimate 3-phosphate synth | 0.992 | 0.992 | 0.806 | 0.0 | |
| 257228991 | 518 | 5-enolpyruvylshikimate-3-phosphate synth | 0.998 | 1.0 | 0.772 | 0.0 | |
| 257228989 | 518 | 5-enolpyruvylshikimate-3-phosphate synth | 0.998 | 1.0 | 0.772 | 0.0 | |
| 114171 | 516 | RecName: Full=3-phosphoshikimate 1-carbo | 0.990 | 0.996 | 0.790 | 0.0 |
| >gi|76782198|gb|ABA54869.1| putative 5-enolpyruvylshikimate 3-phosphate synthase [Fagus sylvatica] | Back alignment and taxonomy information |
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Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/520 (81%), Positives = 458/520 (88%), Gaps = 1/520 (0%)
Query: 1 MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLG-NNNTV 59
MAQVSKIC+G Q+T++F N K QKPKS+ ISF SQ G S+SW L+ + V
Sbjct: 1 MAQVSKICSGAQSTQIFHNNPKPQKPKSIGFISFGSQLLGSSTSWTLKNKHVCAVGSAKV 60
Query: 60 RTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN 119
T R SASV TAEK S EIVLQPI++ISGT+ LPGSKSLSNRILLLAALSEGTTVVDN
Sbjct: 61 GTFRVSASVATAEKPSTVPEIVLQPIKDISGTIKLPGSKSLSNRILLLAALSEGTTVVDN 120
Query: 120 LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM 179
LL+S+DIH+ML ALK LGL VEED A+KRAIVEGCGGLFP+ K+ EI+LFLGNAGTAM
Sbjct: 121 LLNSDDIHYMLGALKTLGLRVEEDKAIKRAIVEGCGGLFPVGKESRDEIQLFLGNAGTAM 180
Query: 180 RPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239
RPLTAAVT AGGN SY+LDGVPRMRERPIGDLV GL+QLGA+VDC LGT CPPVR+ GKG
Sbjct: 181 RPLTAAVTVAGGNSSYVLDGVPRMRERPIGDLVDGLQQLGANVDCFLGTKCPPVRVFGKG 240
Query: 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFV 299
GLPGGKVKLSG +SSQYLTAL+MAAPLALG+VEIEIIDKLISVPYVEMTLKLMERFG+ V
Sbjct: 241 GLPGGKVKLSGSISSQYLTALVMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISV 300
Query: 300 EHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDV 359
EH+DSWDRF I+GGQKYKSPGNA+VEGDASSASYF+AGAAVTGGTVTVEGCGTSSLQGDV
Sbjct: 301 EHNDSWDRFLIRGGQKYKSPGNAYVEGDASSASYFLAGAAVTGGTVTVEGCGTSSLQGDV 360
Query: 360 KFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419
KFAEVLEKMGAKVTW+E SVTVTGPP+D +KHLRA+DVNMNKMPDVAMTLAVVALFAD
Sbjct: 361 KFAEVLEKMGAKVTWSETSVTVTGPPQDSSKKKHLRAIDVNMNKMPDVAMTLAVVALFAD 420
Query: 420 GPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHR 479
GPTAIRDVASWRVKETERMIA+CTELRKLGATVEEGPDYCVITPPEKL V IDTYDDHR
Sbjct: 421 GPTAIRDVASWRVKETERMIAVCTELRKLGATVEEGPDYCVITPPEKLNVTDIDTYDDHR 480
Query: 480 MAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519
MAMAFSLAAC DVPVTI DP CTRKTFPDYF+VL TK
Sbjct: 481 MAMAFSLAACGDVPVTINDPGCTRKTFPDYFEVLQRFTKH 520
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Source: Fagus sylvatica Species: Fagus sylvatica Genus: Fagus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157142998|gb|ABV24481.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|15225450|ref|NP_182055.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] gi|166898083|sp|P05466.3|AROA_ARATH RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|2583124|gb|AAB82633.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|63003818|gb|AAY25438.1| At2g45300 [Arabidopsis thaliana] gi|110742505|dbj|BAE99170.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|330255442|gb|AEC10536.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|164564335|gb|ABY61050.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] gi|193230774|gb|ACF16410.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|295790|emb|CAA29828.1| EPSP [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18251236|gb|AAL65913.1|AF440389_1 5-enolpyruvylshikimate-3-phosphate synthase [Orychophragmus violaceus] | Back alignment and taxonomy information |
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| >gi|55740769|gb|AAV64030.1| 5-enolpyruvylshikimate 3-phosphate synthase [Camptotheca acuminata] | Back alignment and taxonomy information |
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| >gi|257228991|gb|ACV53022.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] | Back alignment and taxonomy information |
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| >gi|257228989|gb|ACV53021.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] | Back alignment and taxonomy information |
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| >gi|114171|sp|P17688.1|AROA_BRANA RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|17815|emb|CAA35839.1| 5-enolpyruvylshikimate-3-phosphate synthase [Brassica napus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 519 | ||||||
| TAIR|locus:2050812 | 520 | AT2G45300 [Arabidopsis thalian | 0.992 | 0.990 | 0.703 | 4e-193 | |
| TAIR|locus:2028544 | 521 | AT1G48860 [Arabidopsis thalian | 0.907 | 0.904 | 0.742 | 1.5e-186 | |
| UNIPROTKB|Q9KRB0 | 426 | aroA "3-phosphoshikimate 1-car | 0.801 | 0.976 | 0.516 | 9.5e-105 | |
| TIGR_CMR|VC_1732 | 426 | VC_1732 "3-phosphoshikimate 1- | 0.801 | 0.976 | 0.516 | 9.5e-105 | |
| TIGR_CMR|CPS_2333 | 426 | CPS_2333 "3-phosphoshikimate 1 | 0.815 | 0.992 | 0.485 | 2.4e-99 | |
| TIGR_CMR|SO_2404 | 426 | SO_2404 "3-phosphoshikimate 1- | 0.795 | 0.969 | 0.480 | 5.2e-97 | |
| UNIPROTKB|P0A6D3 | 427 | aroA "3-phosphoshikimate-1-car | 0.705 | 0.857 | 0.456 | 6e-80 | |
| CGD|CAL0004346 | 1551 | ARO1 [Candida albicans (taxid: | 0.824 | 0.275 | 0.375 | 5.5e-57 | |
| SGD|S000002534 | 1588 | ARO1 "Pentafunctional arom pro | 0.772 | 0.252 | 0.360 | 2e-55 | |
| ASPGD|ASPL0000055969 | 1583 | aromA [Emericella nidulans (ta | 0.853 | 0.279 | 0.348 | 8.8e-51 |
| TAIR|locus:2050812 AT2G45300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1871 (663.7 bits), Expect = 4.0e-193, P = 4.0e-193
Identities = 367/522 (70%), Positives = 411/522 (78%)
Query: 1 MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAIXXXXX----XXXXXXXWGLRYNDRLGNN 56
MAQVS+ICNG+QN + +N +K + KS ++ WGL+ +
Sbjct: 1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60
Query: 57 NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
+ +R ++ +SV TAEK ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct: 61 SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117
Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
VDNLL+S+DI++MLDALK+LGLNVE D RA+VEGCGG+FP + +IEL+LGNAG
Sbjct: 118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177
Query: 177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct: 178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237
Query: 237 XXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFG 296
QY G+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct: 238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297
Query: 297 VFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQ 356
V VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF EGCGT+SLQ
Sbjct: 298 VSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQ 357
Query: 357 GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVAL 416
GDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTLAVVAL
Sbjct: 358 GDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTLAVVAL 417
Query: 417 FADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYD 476
FADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP+K+K A IDTYD
Sbjct: 418 FADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPKKVKTAEIDTYD 477
Query: 477 DHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518
DHRMAMAFSLAACADVP+TI DP CTRKTFPDYF VL+ +TK
Sbjct: 478 DHRMAMAFSLAACADVPITINDPGCTRKTFPDYFQVLERITK 519
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| TAIR|locus:2028544 AT1G48860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KRB0 aroA "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_1732 VC_1732 "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_2333 CPS_2333 "3-phosphoshikimate 1-carboxyvinyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_2404 SO_2404 "3-phosphoshikimate 1-carboxyvinyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P0A6D3 aroA "3-phosphoshikimate-1-carboxyvinyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RLV9 | AROA_XENNA | 2, ., 5, ., 1, ., 1, 9 | 0.5349 | 0.8053 | 0.9766 | yes | no |
| P23281 | AROA2_TOBAC | 2, ., 5, ., 1, ., 1, 9 | 0.8668 | 0.6512 | 1.0 | N/A | no |
| Q7N6D5 | AROA_PHOLL | 2, ., 5, ., 1, ., 1, 9 | 0.55 | 0.8150 | 0.9883 | yes | no |
| B5XY87 | AROA_KLEP3 | 2, ., 5, ., 1, ., 1, 9 | 0.5456 | 0.8111 | 0.9859 | yes | no |
| P05466 | AROA_ARATH | 2, ., 5, ., 1, ., 1, 9 | 0.7782 | 0.9942 | 0.9923 | yes | no |
| A9L2X7 | AROA_SHEB9 | 2, ., 5, ., 1, ., 1, 9 | 0.5324 | 0.8015 | 0.9765 | yes | no |
| A3QEC0 | AROA_SHELP | 2, ., 5, ., 1, ., 1, 9 | 0.5393 | 0.8015 | 0.9765 | yes | no |
| B7VM38 | AROA_VIBSL | 2, ., 5, ., 1, ., 1, 9 | 0.5460 | 0.8053 | 0.9812 | yes | no |
| Q8EEH8 | AROA_SHEON | 2, ., 5, ., 1, ., 1, 9 | 0.5391 | 0.7976 | 0.9718 | yes | no |
| Q66CI8 | AROA_YERPS | 2, ., 5, ., 1, ., 1, 9 | 0.5486 | 0.7996 | 0.9696 | yes | no |
| A7FJW9 | AROA_YERP3 | 2, ., 5, ., 1, ., 1, 9 | 0.5486 | 0.7996 | 0.9696 | yes | no |
| Q0HV11 | AROA_SHESR | 2, ., 5, ., 1, ., 1, 9 | 0.5391 | 0.7976 | 0.9718 | yes | no |
| A5F7G5 | AROA_VIBC3 | 2, ., 5, ., 1, ., 1, 9 | 0.5603 | 0.8150 | 0.9929 | yes | no |
| B1JRD9 | AROA_YERPY | 2, ., 5, ., 1, ., 1, 9 | 0.5486 | 0.7996 | 0.9696 | yes | no |
| A8FVN6 | AROA_SHESH | 2, ., 5, ., 1, ., 1, 9 | 0.5391 | 0.8015 | 0.9765 | yes | no |
| B0TT43 | AROA_SHEHH | 2, ., 5, ., 1, ., 1, 9 | 0.5216 | 0.8150 | 0.9929 | yes | no |
| Q9KRB0 | AROA_VIBCH | 2, ., 5, ., 1, ., 1, 9 | 0.5626 | 0.8150 | 0.9929 | yes | no |
| A3D4A6 | AROA_SHEB5 | 2, ., 5, ., 1, ., 1, 9 | 0.5370 | 0.8015 | 0.9765 | yes | no |
| A1RJF8 | AROA_SHESW | 2, ., 5, ., 1, ., 1, 9 | 0.5347 | 0.8015 | 0.9765 | yes | no |
| P10748 | AROA_SOLLC | 2, ., 5, ., 1, ., 1, 9 | 0.7686 | 0.9942 | 0.9923 | N/A | no |
| A0KWN7 | AROA_SHESA | 2, ., 5, ., 1, ., 1, 9 | 0.5437 | 0.7976 | 0.9718 | yes | no |
| A6T701 | AROA_KLEP7 | 2, ., 5, ., 1, ., 1, 9 | 0.5479 | 0.8111 | 0.9859 | yes | no |
| Q60112 | AROA_YERPE | 2, ., 5, ., 1, ., 1, 9 | 0.5462 | 0.7996 | 0.9696 | yes | no |
| A4TN18 | AROA_YERPP | 2, ., 5, ., 1, ., 1, 9 | 0.5462 | 0.7996 | 0.9696 | yes | no |
| Q1CA73 | AROA_YERPA | 2, ., 5, ., 1, ., 1, 9 | 0.5462 | 0.7996 | 0.9696 | yes | no |
| B2KA23 | AROA_YERPB | 2, ., 5, ., 1, ., 1, 9 | 0.5486 | 0.7996 | 0.9696 | yes | no |
| A6WNN0 | AROA_SHEB8 | 2, ., 5, ., 1, ., 1, 9 | 0.5370 | 0.8015 | 0.9765 | yes | no |
| B8EA95 | AROA_SHEB2 | 2, ., 5, ., 1, ., 1, 9 | 0.5347 | 0.8015 | 0.9765 | yes | no |
| C3LN54 | AROA_VIBCM | 2, ., 5, ., 1, ., 1, 9 | 0.5626 | 0.8150 | 0.9929 | yes | no |
| A1STZ0 | AROA_PSYIN | 2, ., 5, ., 1, ., 1, 9 | 0.5444 | 0.8188 | 0.9929 | yes | no |
| A4Y732 | AROA_SHEPC | 2, ., 5, ., 1, ., 1, 9 | 0.5370 | 0.8015 | 0.9765 | yes | no |
| Q87QX9 | AROA_VIBPA | 2, ., 5, ., 1, ., 1, 9 | 0.5410 | 0.8131 | 0.9906 | yes | no |
| Q6LPE1 | AROA_PHOPR | 2, ., 5, ., 1, ., 1, 9 | 0.5444 | 0.8150 | 0.9883 | yes | no |
| Q1CGG5 | AROA_YERPN | 2, ., 5, ., 1, ., 1, 9 | 0.5462 | 0.7996 | 0.9696 | yes | no |
| Q83RY8 | AROA_SHIFL | 2, ., 5, ., 1, ., 1, 9 | 0.5330 | 0.8131 | 0.9882 | yes | no |
| A7MES7 | AROA_CROS8 | 2, ., 5, ., 1, ., 1, 9 | 0.5466 | 0.8131 | 0.9859 | yes | no |
| A6Q7Q0 | AROA_SULNB | 2, ., 5, ., 1, ., 1, 9 | 0.5487 | 0.8150 | 0.9906 | yes | no |
| Q0HIX1 | AROA_SHESM | 2, ., 5, ., 1, ., 1, 9 | 0.5391 | 0.7976 | 0.9718 | yes | no |
| A8H4A4 | AROA_SHEPA | 2, ., 5, ., 1, ., 1, 9 | 0.5216 | 0.8150 | 0.9929 | yes | no |
| P11043 | AROA_PETHY | 2, ., 5, ., 1, ., 1, 9 | 0.7842 | 0.9942 | 1.0 | N/A | no |
| P23981 | AROA1_TOBAC | 2, ., 5, ., 1, ., 1, 9 | 0.7609 | 0.9903 | 0.9922 | N/A | no |
| P17688 | AROA_BRANA | 2, ., 5, ., 1, ., 1, 9 | 0.7907 | 0.9903 | 0.9961 | N/A | no |
| P19688 | AROA_YERE8 | 2, ., 5, ., 1, ., 1, 9 | 0.5489 | 0.8131 | 0.9859 | yes | no |
| A9R7I2 | AROA_YERPG | 2, ., 5, ., 1, ., 1, 9 | 0.5462 | 0.7996 | 0.9696 | yes | no |
| A4W8S8 | AROA_ENT38 | 2, ., 5, ., 1, ., 1, 9 | 0.5479 | 0.8111 | 0.9859 | yes | no |
| A8GCH1 | AROA_SERP5 | 2, ., 5, ., 1, ., 1, 9 | 0.5398 | 0.8131 | 0.9859 | yes | no |
| A8AIH5 | AROA_CITK8 | 2, ., 5, ., 1, ., 1, 9 | 0.5319 | 0.8111 | 0.9859 | yes | no |
| Q482G5 | AROA_COLP3 | 2, ., 5, ., 1, ., 1, 9 | 0.5375 | 0.8150 | 0.9929 | yes | no |
| Q7MJ45 | AROA_VIBVY | 2, ., 5, ., 1, ., 1, 9 | 0.5398 | 0.8150 | 0.9883 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.5.1.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.5.1.19 | 0.979 |
| 3rd Layer | 2.5.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT2G45300 | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase; encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis (520 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
 | EMB1144 | • | • | • | • | • | 0.999 | ||||
 | AT5G66120 | • | • | • | • | • | 0.975 | ||||
 | AT4G39540 | • | • | • | 0.971 | ||||||
 | AT2G21940 | • | • | • | 0.967 | ||||||
 | MEE32 | • | • | • | • | • | 0.917 | ||||
 | AT5G17990.1-P | • | • | • | 0.915 | ||||||
 | CSR1 | • | 0.878 | ||||||||
 | TRPA | • | • | 0.847 | |||||||
 | ATKDSA2 | • | • | 0.769 | |||||||
 | AT5G48220 | • | • | 0.711 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 519 | |||
| PLN02338 | 443 | PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvi | 0.0 | |
| PRK11860 | 661 | PRK11860, PRK11860, bifunctional 3-phosphoshikimat | 0.0 | |
| PRK02427 | 435 | PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvi | 0.0 | |
| cd01556 | 409 | cd01556, EPSP_synthase, EPSP synthase domain | 1e-178 | |
| TIGR01356 | 409 | TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyl | 1e-177 | |
| pfam00275 | 415 | pfam00275, EPSP_synthase, EPSP synthase (3-phospho | 1e-166 | |
| COG0128 | 428 | COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate | 1e-162 | |
| PRK11861 | 673 | PRK11861, PRK11861, bifunctional prephenate dehydr | 1e-139 | |
| cd01554 | 408 | cd01554, EPT-like, Enol pyruvate transferases fami | 1e-112 | |
| PRK14806 | 735 | PRK14806, PRK14806, bifunctional cyclohexadienyl d | 6e-33 | |
| cd01553 | 211 | cd01553, EPT_RTPC-like, This domain family include | 1e-26 | |
| cd01555 | 400 | cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyru | 1e-17 | |
| TIGR01072 | 416 | TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy | 2e-13 | |
| COG0766 | 421 | COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl | 1e-11 | |
| PRK09369 | 417 | PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carb | 5e-10 | |
| TIGR01072 | 416 | TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy | 3e-05 | |
| PRK12830 | 417 | PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carb | 1e-04 | |
| COG0766 | 421 | COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl | 2e-04 | |
| COG0766 | 421 | COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl | 0.003 |
| >gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
Score = 897 bits (2319), Expect = 0.0
Identities = 382/442 (86%), Positives = 408/442 (92%)
Query: 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1 AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60
Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
GLNVEED RA+VEGCGG FP++ ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61 GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120
Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180
Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240
Query: 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
KSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCGT+SLQGDVKFAEVLEKMGAKV WTE
Sbjct: 241 KSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTE 300
Query: 377 NSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE 436
NSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE
Sbjct: 301 NSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE 360
Query: 437 RMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTI 496
RMIAICTELRKLGATVEEGPDYC+ITPP+KLK A IDTYDDHRMAMAFSLAAC DVPVTI
Sbjct: 361 RMIAICTELRKLGATVEEGPDYCIITPPKKLKPAEIDTYDDHRMAMAFSLAACGDVPVTI 420
Query: 497 KDPSCTRKTFPDYFDVLDSVTK 518
DP CTRKTFP YFDVL+S+ K
Sbjct: 421 NDPGCTRKTFPTYFDVLESIAK 442
|
Length = 443 |
| >gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain | Back alignment and domain information |
|---|
| >gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Back alignment and domain information |
|---|
| >gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
|---|
| >gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) | Back alignment and domain information |
|---|
| >gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
|---|
| >gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| COG0128 | 428 | AroA 5-enolpyruvylshikimate-3-phosphate synthase [ | 100.0 | |
| PLN02338 | 443 | 3-phosphoshikimate 1-carboxyvinyltransferase | 100.0 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 100.0 | |
| PRK11860 | 661 | bifunctional 3-phosphoshikimate 1-carboxyvinyltran | 100.0 | |
| PF00275 | 419 | EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 | 100.0 | |
| TIGR01356 | 409 | aroA 3-phosphoshikimate 1-carboxyvinyltransferase. | 100.0 | |
| KOG0692 | 595 | consensus Pentafunctional AROM protein [Amino acid | 100.0 | |
| cd01554 | 408 | EPT-like Enol pyruvate transferases family include | 100.0 | |
| cd01556 | 409 | EPSP_synthase EPSP synthase domain. 3-phosphoshiki | 100.0 | |
| PRK02427 | 435 | 3-phosphoshikimate 1-carboxyvinyltransferase; Prov | 100.0 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 100.0 | |
| PRK09369 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| COG0766 | 421 | MurA UDP-N-acetylglucosamine enolpyruvyl transfera | 100.0 | |
| cd01555 | 400 | UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf | 100.0 | |
| PRK12830 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| TIGR01072 | 416 | murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe | 100.0 | |
| TIGR01356 | 409 | aroA 3-phosphoshikimate 1-carboxyvinyltransferase. | 100.0 | |
| COG0128 | 428 | AroA 5-enolpyruvylshikimate-3-phosphate synthase [ | 100.0 | |
| PRK02427 | 435 | 3-phosphoshikimate 1-carboxyvinyltransferase; Prov | 100.0 | |
| PRK09369 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| PRK12830 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| TIGR01072 | 416 | murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe | 100.0 | |
| PLN02338 | 443 | 3-phosphoshikimate 1-carboxyvinyltransferase | 100.0 | |
| cd01556 | 409 | EPSP_synthase EPSP synthase domain. 3-phosphoshiki | 100.0 | |
| cd01555 | 400 | UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf | 99.98 | |
| COG0766 | 421 | MurA UDP-N-acetylglucosamine enolpyruvyl transfera | 99.98 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 99.97 | |
| PRK11860 | 661 | bifunctional 3-phosphoshikimate 1-carboxyvinyltran | 99.97 | |
| cd01554 | 408 | EPT-like Enol pyruvate transferases family include | 99.97 | |
| PF00275 | 419 | EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 | 99.96 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.94 | |
| cd01553 | 211 | EPT_RTPC-like This domain family includes the Enol | 99.94 | |
| KOG0692 | 595 | consensus Pentafunctional AROM protein [Amino acid | 99.78 | |
| cd01553 | 211 | EPT_RTPC-like This domain family includes the Enol | 99.41 | |
| PF01137 | 228 | RTC: RNA 3'-terminal phosphate cyclase; InterPro: | 94.65 | |
| TIGR03399 | 326 | RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o | 93.7 | |
| COG0430 | 341 | RCL1 RNA 3'-terminal phosphate cyclase [RNA proces | 93.51 | |
| PRK04204 | 343 | RNA 3'-terminal-phosphate cyclase; Provisional | 93.43 | |
| cd00874 | 326 | RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma | 93.14 | |
| cd00875 | 341 | RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai | 91.05 | |
| TIGR03400 | 360 | 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me | 90.96 | |
| cd00295 | 338 | RNA_Cyclase RNA 3' phosphate cyclase domain - RNA | 89.97 | |
| COG0430 | 341 | RCL1 RNA 3'-terminal phosphate cyclase [RNA proces | 89.1 | |
| PF01137 | 228 | RTC: RNA 3'-terminal phosphate cyclase; InterPro: | 85.83 | |
| TIGR03400 | 360 | 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me | 85.53 | |
| cd00295 | 338 | RNA_Cyclase RNA 3' phosphate cyclase domain - RNA | 85.35 | |
| PRK04204 | 343 | RNA 3'-terminal-phosphate cyclase; Provisional | 84.19 | |
| cd00875 | 341 | RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai | 84.18 | |
| TIGR03399 | 326 | RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o | 84.04 | |
| cd00874 | 326 | RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma | 82.81 |
| >COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-85 Score=674.64 Aligned_cols=413 Identities=44% Similarity=0.675 Sum_probs=371.2
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccC
Q 010070 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQ 164 (519)
Q Consensus 85 ~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~ 164 (519)
..+++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|++++++||++|++++ ..+.|+|.++.+..+
T Consensus 10 ~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~--- 84 (428)
T COG0128 10 PSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP--- 84 (428)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC---
Confidence 357999999999999999999999999999999999999999999999999999999865 589999987533443
Q ss_pred CCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCce
Q 010070 165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (519)
Q Consensus 165 ~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~ 244 (519)
...+++|||||++|+|+++++.. .++.++++|+.+|++|||.+++++|+++|++|+..++.+++|+.|+|+ +.++
T Consensus 85 --~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~ 159 (428)
T COG0128 85 --PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGG 159 (428)
T ss_pred --CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCc
Confidence 46899999999999999998862 347899999999999999999999999999999877678899999996 7788
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccc
Q 010070 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV 324 (519)
Q Consensus 245 ~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i 324 (519)
.+++++++||||++++||+|++..+..++.......|++|+++|+++|++||++|+.++. .|.|+|++++. |.+|.|
T Consensus 160 ~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--~~~i~~g~~~~-~~~~~V 236 (428)
T COG0128 160 EVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--RFYIPGGQKLT-PGDYDV 236 (428)
T ss_pred eEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--EEEECCCcccc-CceEEc
Confidence 999999999999999999988887444443444577899999999999999999999854 79999988766 889999
Q ss_pred cCChhhHHHHHHHHHhc-CCe-EEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeE-EEeCCCCCCCCCCCcceeEEeC
Q 010070 325 EGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTGPPRDPYGRKHLRAVDVNM 401 (519)
Q Consensus 325 ~~D~~~a~~~la~aa~~-~g~-v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i-~i~g~~~~~~~~~~l~g~~v~~ 401 (519)
|+|+|+|+||+++++++ +.+ ++++++..+ +.|..++++|++||+++++.++.. +|.+. ..|+|+++|+
T Consensus 237 pgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~-------~~l~gi~vd~ 307 (428)
T COG0128 237 PGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRGS-------GELKGIEVDM 307 (428)
T ss_pred CCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEeec-------CCccCeEeCc
Confidence 99999999999999987 555 777776652 445778999999999999998884 88775 2499999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccE-EecCccHHH
Q 010070 402 NKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA-IDTYDDHRM 480 (519)
Q Consensus 402 ~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~-i~~~~Dhr~ 480 (519)
+++||++|+++++|++|+|+|+|+|+++||+|||||+.+++++|+|||+++++.+|++.|+|+.+++|.. +++|+||||
T Consensus 308 ~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g~~~l~g~~~v~s~~DHRi 387 (428)
T COG0128 308 DDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITGGTKLKGAGTVDSYGDHRI 387 (428)
T ss_pred ccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEEEECCCCCCCCccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987899984 999999999
Q ss_pred HHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 481 AMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 481 ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
||+|++|++ +.++++|+|++|++||||+||++|++|+++
T Consensus 388 aMa~aia~l~~~~~v~I~~~~~v~kSfP~F~~~l~~l~~~ 427 (428)
T COG0128 388 AMAFAVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGAR 427 (428)
T ss_pred HHHHHHHHhhcCCCEEEcCccceeccCchHHHHHHHhhCC
Confidence 999999997 566799999999999999999999999875
|
|
| >PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
|---|
| >PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
|---|
| >cd01556 EPSP_synthase EPSP synthase domain | Back alignment and domain information |
|---|
| >PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
|---|
| >COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
|---|
| >PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >cd01556 EPSP_synthase EPSP synthase domain | Back alignment and domain information |
|---|
| >cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
|---|
| >COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
|---|
| >cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
|---|
| >PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
|---|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) | Back alignment and domain information |
|---|
| >KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) | Back alignment and domain information |
|---|
| >PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
| >TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase | Back alignment and domain information |
|---|
| >COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional | Back alignment and domain information |
|---|
| >cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) | Back alignment and domain information |
|---|
| >cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes | Back alignment and domain information |
|---|
| >TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 | Back alignment and domain information |
|---|
| >cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond | Back alignment and domain information |
|---|
| >COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
| >TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 | Back alignment and domain information |
|---|
| >cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond | Back alignment and domain information |
|---|
| >PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional | Back alignment and domain information |
|---|
| >cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes | Back alignment and domain information |
|---|
| >TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase | Back alignment and domain information |
|---|
| >cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 519 | ||||
| 3nvs_A | 450 | 1.02 Angstrom Resolution Crystal Structure Of 3-Pho | 1e-113 | ||
| 1g6s_A | 427 | Structure Of Epsp Synthase Liganded With Shikimate- | 1e-105 | ||
| 1eps_A | 427 | Structure And Topological Symmetry Of The Glyphosph | 1e-105 | ||
| 3fjx_A | 427 | E. Coli Epsp Synthase (T97i) Liganded With S3p Leng | 1e-104 | ||
| 1mi4_A | 427 | Glyphosate Insensitive G96a Mutant Epsp Synthase Li | 1e-104 | ||
| 2qfs_A | 427 | E.coli Epsp Synthase Pro101ser Liganded With S3p Le | 1e-104 | ||
| 2qfq_A | 427 | E. Coli Epsp Synthase Pro101leu Liganded With S3p L | 1e-104 | ||
| 3fk0_A | 427 | E. Coli Epsp Synthase (Tips Mutation) Liganded With | 1e-104 | ||
| 1q36_A | 427 | Epsp Synthase (Asp313ala) Liganded With Tetrahedral | 1e-101 | ||
| 3ti2_A | 228 | 1.90 Angstrom Resolution Crystal Structure Of N-Ter | 1e-43 | ||
| 4gfp_A | 462 | 2.7 Angstrom Resolution Structure Of 3-Phosphoshiki | 3e-33 | ||
| 3roi_A | 441 | 2.20 Angstrom Resolution Structure Of 3-Phosphoshik | 1e-32 | ||
| 1p88_A | 216 | Substrate-Induced Structural Changes To The Isolate | 5e-32 | ||
| 3tr1_A | 441 | Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltra | 8e-29 | ||
| 1rf4_A | 427 | Structural Studies Of Streptococcus Pneumoniae Epsp | 3e-25 | ||
| 3rmt_A | 455 | Crystal Structure Of Putative 5-Enolpyruvoylshikima | 2e-24 | ||
| 2bjb_A | 462 | Mycobacterium Tuberculosis Epsp Synthase In Unligan | 7e-23 | ||
| 2o0b_A | 450 | Mycobacterium Tuberculosis Epsp Synthase In Complex | 7e-23 | ||
| 2ggd_A | 455 | Cp4 Epsp Synthase Ala100gly Liganded With S3p And G | 3e-08 | ||
| 2ggd_A | 455 | Cp4 Epsp Synthase Ala100gly Liganded With S3p And G | 2e-06 | ||
| 2pqd_A | 445 | A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te | 3e-08 | ||
| 2pqd_A | 445 | A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te | 2e-06 | ||
| 2pqb_A | 445 | Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed | 1e-07 | ||
| 2pqb_A | 445 | Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed | 2e-06 | ||
| 2gg4_A | 455 | Cp4 Epsp Synthase (Unliganded) Length = 455 | 1e-07 | ||
| 2gg4_A | 455 | Cp4 Epsp Synthase (Unliganded) Length = 455 | 2e-06 |
| >pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate Length = 450 | Back alignment and structure |
|
| >pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3- Phosphate And Glyphosate Length = 427 | Back alignment and structure |
| >pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate 5-enol- Pyruvylshikimate-3-phosphate Synthase: A Distinctive Protein Fold Length = 427 | Back alignment and structure |
| >pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p Length = 427 | Back alignment and structure |
| >pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded With Shikimate-3-Phosphate Length = 427 | Back alignment and structure |
| >pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p Length = 427 | Back alignment and structure |
| >pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p Length = 427 | Back alignment and structure |
| >pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p Length = 427 | Back alignment and structure |
| >pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral Reaction Intermediate Length = 427 | Back alignment and structure |
| >pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae Length = 228 | Back alignment and structure |
| >pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In A Second Conformational State Length = 462 | Back alignment and structure |
| >pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 | Back alignment and structure |
| >pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N- Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate Synthase Length = 216 | Back alignment and structure |
| >pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 | Back alignment and structure |
| >pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase, Tetrahedral Intermediate Bound State Length = 427 | Back alignment and structure |
| >pdb|3RMT|A Chain A, Crystal Structure Of Putative 5-Enolpyruvoylshikimate-3-Phosphate Synthase From Bacillus Halodurans C-125 Length = 455 | Back alignment and structure |
| >pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded State Length = 462 | Back alignment and structure |
| >pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With S3p (Partially Photolyzed) Length = 450 | Back alignment and structure |
| >pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 | Back alignment and structure |
| >pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 | Back alignment and structure |
| >pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 | Back alignment and structure |
| >pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 | Back alignment and structure |
| >pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 | Back alignment and structure |
| >pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 | Back alignment and structure |
| >pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 | Back alignment and structure |
| >pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Length = 450 | Back alignment and structure |
|---|
Score = 647 bits (1672), Expect = 0.0
Identities = 245/449 (54%), Positives = 305/449 (67%), Gaps = 16/449 (3%)
Query: 70 TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
+ + + LQPI ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18 LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77
Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
L+AL KLG+N VEG G F +ELFLGNAGTAMRPL AA+
Sbjct: 78 LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133
Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP+RI G G L G V +
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG-LQAGTVTID 190
Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D + F
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249
Query: 310 IQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMG 369
I GQ Y SPG VEGDASSASYF+A AA+ GG V V G G +S+QGD++FA+ LEKMG
Sbjct: 250 IPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMG 309
Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVAS 429
A++ W ++ V L AVD++ N +PD AMT+A ALFA G TAIR+V +
Sbjct: 310 AQIEWGDDYVIARRGE--------LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYN 361
Query: 430 WRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC 489
WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL AAIDTYDDHRMAM FSL A
Sbjct: 362 WRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVAL 421
Query: 490 ADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518
+D PVTI DP CT KTFPDYFD +++
Sbjct: 422 SDTPVTINDPKCTSKTFPDYFDKFAQLSR 450
|
| >2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 | Back alignment and structure |
|---|
| >3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Length = 455 | Back alignment and structure |
|---|
| >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 | Back alignment and structure |
|---|
| >3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 3tr1_A Length = 441 | Back alignment and structure |
|---|
| >2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Length = 479 | Back alignment and structure |
|---|
| >1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Length = 419 | Back alignment and structure |
|---|
| >2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Length = 425 | Back alignment and structure |
|---|
| >2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Length = 425 | Back alignment and structure |
|---|
| >3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Length = 454 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| 3nvs_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; stru | 100.0 | |
| 3rmt_A | 455 | 3-phosphoshikimate 1-carboxyvinyltransferase 1; st | 100.0 | |
| 2o0b_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; shik | 100.0 | |
| 3slh_A | 441 | 3-phosphoshikimate 1-carboxyvinyltransferase; stru | 100.0 | |
| 1rf6_A | 427 | 5-enolpyruvylshikimate-3-phosphate synthase; shiki | 100.0 | |
| 2pqc_A | 445 | 3-phosphoshikimate 1-carboxyvinyltransferase; insi | 100.0 | |
| 4fqd_A | 479 | NIKO protein; beta/alpha inverse barrel, enolpyruv | 100.0 | |
| 1ejd_A | 419 | MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran | 100.0 | |
| 3r38_A | 454 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| 2yvw_A | 425 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| 3slh_A | 441 | 3-phosphoshikimate 1-carboxyvinyltransferase; stru | 100.0 | |
| 3nvs_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; stru | 100.0 | |
| 3rmt_A | 455 | 3-phosphoshikimate 1-carboxyvinyltransferase 1; st | 100.0 | |
| 3r38_A | 454 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
| 2o0b_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; shik | 99.98 | |
| 1rf6_A | 427 | 5-enolpyruvylshikimate-3-phosphate synthase; shiki | 99.97 | |
| 4fqd_A | 479 | NIKO protein; beta/alpha inverse barrel, enolpyruv | 99.97 | |
| 1ejd_A | 419 | MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran | 99.97 | |
| 2yvw_A | 425 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 99.97 | |
| 2pqc_A | 445 | 3-phosphoshikimate 1-carboxyvinyltransferase; insi | 99.96 | |
| 3tut_A | 358 | RNA 3'-terminal phosphate cyclase; cyclase family, | 93.37 | |
| 3pqv_A | 365 | RCL1 protein; RTC-like, cyclase-like, modular, alp | 91.52 | |
| 3tut_A | 358 | RNA 3'-terminal phosphate cyclase; cyclase family, | 90.29 |
| >3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-80 Score=659.14 Aligned_cols=429 Identities=57% Similarity=0.918 Sum_probs=390.2
Q ss_pred ccCcceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEc
Q 010070 74 QSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 153 (519)
Q Consensus 74 ~~~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g 153 (519)
.+.|+.+.|+|.++++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++..+++|+|
T Consensus 22 ~~~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g 101 (450)
T 3nvs_A 22 SNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEG 101 (450)
T ss_dssp ---CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEEC
T ss_pred cCccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeC
Confidence 34488899999999999999999999999999999999999999999999999999999999999999875422699999
Q ss_pred CCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcE
Q 010070 154 CGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPV 233 (519)
Q Consensus 154 ~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi 233 (519)
.++.+..+ ....+++||||+++|||+++++. +++++.++|+|+|++||+++++++|++||++|+..++++++|+
T Consensus 102 ~~~~~~~~----~~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~ 175 (450)
T 3nvs_A 102 LGQAFHTT----QPLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPL 175 (450)
T ss_dssp CSSCCBCS----SCEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCE
T ss_pred CCCCcCCC----CCceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeE
Confidence 86444332 12368899999999999998664 4689999999999999999999999999999998555578899
Q ss_pred EEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecC
Q 010070 234 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 313 (519)
Q Consensus 234 ~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~ 313 (519)
+|+|+ ++.++++++++++||||++++||||++++|+++|++.++..++||+++|+++|++||++|+..+. +.|+|+|.
T Consensus 176 ~I~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g~-~~i~I~g~ 253 (450)
T 3nvs_A 176 RIQGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY-QEFVIPAG 253 (450)
T ss_dssp EEECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT-TEEEECTT
T ss_pred EEEcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecCC-cEEEEcCC
Confidence 99997 68999999999999999999999999999999999876667889999999999999999998763 47999998
Q ss_pred CcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 010070 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (519)
Q Consensus 314 ~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~ 393 (519)
++|..+.++.+++|+++++||++++++++|+++|+|++..++|+|..+++.|++||++|+++++.+++.+. .
T Consensus 254 ~~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D~~i~~~L~~mGa~i~~~~~~i~v~~~--------~ 325 (450)
T 3nvs_A 254 QSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRG--------E 325 (450)
T ss_dssp CCCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEECC--------C
T ss_pred ccccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccchHHHHHHHHHcCCeEEEeCCEEEEecC--------C
Confidence 77874458999999999999999999999999999999999999989999999999999999999998863 4
Q ss_pred cceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEe
Q 010070 394 LRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAID 473 (519)
Q Consensus 394 l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~ 473 (519)
|+|++++...+||++|+++++|++|+|+++|+|++++|+|||||+.+++++|++||++|++.+|.++|+|+++|+|++++
T Consensus 326 L~g~~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~G~~~L~g~~v~ 405 (450)
T 3nvs_A 326 LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAID 405 (450)
T ss_dssp CBCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSSCCCCEEC
T ss_pred cCcEEeecCCCcCHHHHHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEeCCCCCCCCEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCccHHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 474 TYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 474 ~~~Dhr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
+++|||+||+|++||++.++++|+|++|++|+||+||++|++||.
T Consensus 406 ~~~DhR~ama~aiaal~a~~~~I~~~~~v~ksyp~f~~~l~~lg~ 450 (450)
T 3nvs_A 406 TYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 450 (450)
T ss_dssp CTTCHHHHHHHHGGGGSSSCEEEESGGGGGGTCTTHHHHHHHHBC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEECcCeeeCcchhHHHHHHHhcC
Confidence 999999999999999865789999999999999999999999983
|
| >3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A | Back alignment and structure |
|---|
| >3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A | Back alignment and structure |
|---|
| >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* | Back alignment and structure |
|---|
| >2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* | Back alignment and structure |
|---|
| >4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} | Back alignment and structure |
|---|
| >1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... | Back alignment and structure |
|---|
| >3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* | Back alignment and structure |
|---|
| >2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* | Back alignment and structure |
|---|
| >3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A | Back alignment and structure |
|---|
| >3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... | Back alignment and structure |
|---|
| >3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* | Back alignment and structure |
|---|
| >2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A | Back alignment and structure |
|---|
| >1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* | Back alignment and structure |
|---|
| >4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} | Back alignment and structure |
|---|
| >1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... | Back alignment and structure |
|---|
| >2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* | Back alignment and structure |
|---|
| >2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* | Back alignment and structure |
|---|
| >3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A | Back alignment and structure |
|---|
| >3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} | Back alignment and structure |
|---|
| >3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 519 | ||||
| d1g6sa_ | 427 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate | 3e-93 | |
| d1rf6a_ | 427 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate | 3e-86 | |
| d1ejda_ | 419 | d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl | 6e-64 | |
| d1p88a_ | 216 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate | 2e-37 |
| >d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase species: Escherichia coli [TaxId: 562]
Score = 288 bits (738), Expect = 3e-93
Identities = 215/439 (48%), Positives = 282/439 (64%), Gaps = 17/439 (3%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG + L G+ +L G
Sbjct: 64 YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
PRM+ERPIG LV L+ GA + + N PP+R+ +GG GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
LLM APLA + I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF+A AA+ GGTV V G G +S+QGD++FA+VLEKMGA + W ++
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD-- 292
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
R L A+D++MN +PD AMT+A ALFA G T +R++ +WRVKET+R+
Sbjct: 293 ------YISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLF 346
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDP 499
A+ TELRK+GA VEEG DY ITPPEKL A I TY+DHRMAM FSL A +D PVTI DP
Sbjct: 347 AMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDP 406
Query: 500 SCTRKTFPDYFDVLDSVTK 518
CT KTFPDYF+ L +++
Sbjct: 407 KCTAKTFPDYFEQLARISQ 425
|
| >d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 | Back information, alignment and structure |
|---|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 | Back information, alignment and structure |
|---|
| >d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 519 | |||
| d1g6sa_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 100.0 | |
| d1rf6a_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 99.97 | |
| d1p88a_ | 216 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 99.97 | |
| d1rf6a_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 99.96 | |
| d1g6sa_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 99.95 | |
| d1p88a_ | 216 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha | 99.5 | |
| d1qmha2 | 239 | RNA 3'-terminal phosphate cyclase, RPTC {Escherich | 94.19 | |
| d1qmha2 | 239 | RNA 3'-terminal phosphate cyclase, RPTC {Escherich | 94.1 |
| >d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-78 Score=635.46 Aligned_cols=425 Identities=54% Similarity=0.905 Sum_probs=390.0
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|..+.|+|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...+++.|.++
T Consensus 1 M~~l~i~p~~~l~G~i~~pgsKs~s~R~l~~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g~ 80 (427)
T d1g6sa_ 1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG 80 (427)
T ss_dssp CCEEEECCCCEEEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCSS
T ss_pred CCcEEEcCCCeeEEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHHHcCCEEEEeCCceEEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999987667889988875
Q ss_pred CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEE
Q 010070 157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236 (519)
Q Consensus 157 ~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~ 236 (519)
..... ....+++|+||+++|+++++++. ++.++.++|+++|++||+++|+++|++||++|+..++.+++|++++
T Consensus 81 ~~~~~----~~~~i~~g~sgt~~r~l~~l~~~--~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i~ 154 (427)
T d1g6sa_ 81 PLHAE----GALELFLGNAGTAMRPLAAALCL--GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQ 154 (427)
T ss_dssp CCCCC----TTEEEECTTCHHHHHHHHHHTTS--SEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTSSCEEEE
T ss_pred ccccc----ccceeeccccchheeeeeeeecc--cceEEeccccchhccchhhhHHHHHHhcCCEEEEeecccceeEEec
Confidence 43332 14578999999999999987654 5789999999999999999999999999999998666678899999
Q ss_pred cCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcc
Q 010070 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (519)
Q Consensus 237 g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l 316 (519)
|+ +.+++++++++.|||+++++||||+++.+.++|+...+..|+||+++|+++|++||++++..+. +.+.+.+++.+
T Consensus 155 g~--~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~-~~~~~~~~~~~ 231 (427)
T d1g6sa_ 155 GG--FTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY-QQFVVKGGQSY 231 (427)
T ss_dssp EC--CCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETT-TEEEECSSCCC
T ss_pred CC--CcceeEEECCccCcHHHHHHHHHHHhccCCcEEEeccccccCchhhhchhhhcccccccccccc-ccccccCcccc
Confidence 84 7789999999999999999999999999999998766667899999999999999999988775 46778887665
Q ss_pred cCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcce
Q 010070 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (519)
Q Consensus 317 ~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g 396 (519)
..+.++.+|+|+++|+||++++++++|+++++|+..++.|.|..+++.|++||+++++.++.+++.+. .+++
T Consensus 232 ~~~~~~~v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~~~d~~~~~~l~~~G~~i~~~~~~~~~~~~--------~l~~ 303 (427)
T d1g6sa_ 232 QSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRG--------ELNA 303 (427)
T ss_dssp BCCSEEECCBCHHHHHHHHHHHHHHEEEEEEESCCTTCCCGGGGHHHHHHHHTCEEEECSSEEEEECC--------CCBC
T ss_pred cCCceEeccchhhhhhHHHHHHHhhcCceeecccccccccchhhhhhhhhhccccEEEeccccccccc--------cccc
Confidence 55788999999999999999999999999999999999999989999999999999999998877654 4889
Q ss_pred eEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCc
Q 010070 397 VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYD 476 (519)
Q Consensus 397 ~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~ 476 (519)
+++++..+||.+|.+++++++++|.++++|+.++|+|||||+.+++++|++||+++++++|.++|+|+++++++++++|+
T Consensus 304 ~~~d~~~~pd~~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~L~klG~~i~~~~d~l~I~G~~~l~~~~v~s~~ 383 (427)
T d1g6sa_ 304 IDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYN 383 (427)
T ss_dssp CEEECTTSTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSSCCCCEECCTT
T ss_pred eeccccccCCcchhHHHHHhhhcCccceecccccceEEehHHHHHHHHHHHCCCEEEEeCCEEEEeCCCCCccceEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cHHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 477 DHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 477 Dhr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
|||+||+|++||++..+++|+|++||+||||+||++|++|..
T Consensus 384 DHRiama~~iaal~~~g~~I~~~~~i~ksyP~F~~~l~~l~~ 425 (427)
T d1g6sa_ 384 DHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425 (427)
T ss_dssp CHHHHHHHHGGGSSSSCEEEESGGGGGGTCTTHHHHHHHHEE
T ss_pred CHHHHHHHHHHHHcCCCeEEeCCCcccccCHHHHHHHHHHhh
Confidence 999999999999877789999999999999999999999864
|
| >d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|