Citrus Sinensis ID: 010461

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MISNVASHQSPASVPERESCAEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN
cccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEccccEEEEEEEEcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEccccEEEEEEcccccEEEccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEccccEEEEEcccccccHHHHHcccccccccccccccccEEEEEEEcccccEEEEEEcccEEEEcccccEEccccccEEEEEEEcccccccccHHHHHHHHHHcccccccccccccEEEEEEEEcccccccccccccccccccccccccEEccccccccccEEEEEccccccccccEEEEEEcccccEEEEEcccccccccEEEccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEccccccccccccccccc
cHHHHHHcccccccccccccccccEccccccccccccccccEEEEEcccHcccEEEEccccccccccccccccccccEEEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccEEEccccccccccHHHHHHHHHHcHcccccccccccEEEEEEcccEEEEEEcccccEEEEcccccccccEEccccEEEEEEEEccccccccccEEEccccccccEEEEEEccccccEEEEEEEcccccccccEEEcccccccEEEEccccEEEcHHHHHccccccEEEEEEcccccEEEEEEEccccccEEEEEccccEEEEEEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHccccHHHHccccccccEccccccccEEEEEEEEccccccccccEEEEEEEcccEEEEEcccccccccEEEcccccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccccccccEEEEccc
misnvashqspasvperescaehrnhvawtsvkqerwegelvvegeipswlngtylrngpgvwhigefnfghlfdGYAMLVKVHFEkngrliagHRQIETEAYKAAKKNKKlcyrefsvspkpdnFLAYVGELAKLfsgasltdnanngiyklgdgRIICLtetqkgsvivdpdtldtlgkfeysdplggfiqsshpivtddefltllpdllnpgylvvrmepgtnerkvigrvncrggpapgwvhsftmtehyvvvpemplqYSVQSLLKAEpsalyqfewrpeRKAFLHVVCKASgkiaasvevpLYMVFHFINAyeekdkdgRVIAVIADCCEHNADTTIIETLSLknlrsfhgqdvlpdarvgrftipfdgsqfgkletvmdpeehgrgvdmcsinpaylgkkyRYAYAigakrpcnfpnsltkLDLVKQKAKNwceegivpseplfvarpgatdeddgVVISMISEKNGGAYVVLLdgstfeeiararfpfglpygfhgcwvpen
misnvashqspasvperescaehrnhvawtsvkqerweGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTEtqkgsvivdpdTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTipfdgsqfgkLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEegivpseplfvarpgaTDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN
MISNVASHQSPASVPERESCAEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN
************************NHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWV***
**********************HRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWV***
***********************RNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN
************S*PERESCAEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPE*
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MISNVASHQSPASVPERESCAEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
Q8VY26570 Carotenoid cleavage dioxy yes no 0.990 0.885 0.640 0.0
Q9I993526 Beta,beta-carotene 15,15' yes no 0.886 0.859 0.284 8e-46
Q8HXG8556 Beta,beta-carotene 9',10' N/A no 0.888 0.814 0.290 9e-45
Q99NF1532 Beta,beta-carotene 9',10' yes no 0.884 0.847 0.283 1e-44
Q9JJS6566 Beta,beta-carotene 15,15' no no 0.901 0.812 0.285 1e-44
Q9YGX2533 Retinoid isomerohydrolase no no 0.888 0.849 0.292 2e-44
Q9YI25533 Retinoid isomerohydrolase N/A no 0.888 0.849 0.294 2e-44
Q8AXN9533 Retinoid isomerohydrolase N/A no 0.888 0.849 0.289 2e-44
A9C3R9532 All-trans-retinyl ester 1 no no 0.890 0.853 0.275 3e-44
A9C3R8532 Retinal Mueller cells iso no no 0.890 0.853 0.283 5e-44
>sp|Q8VY26|CCD8_ARATH Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=1 SV=1 Back     alignment and function desciption
 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/514 (64%), Positives = 422/514 (82%), Gaps = 9/514 (1%)

Query: 5   VASHQSPASVPERESC-AEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVW 63
           V +  +P+ +PE+E    E R HVAWTSV+QE WEGEL V+G+IP+WLNGTYLRNGPG+W
Sbjct: 58  VINSAAPSPLPEKEKVEGERRCHVAWTSVQQENWEGELTVQGKIPTWLNGTYLRNGPGLW 117

Query: 64  HIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKP 123
           +IG+ +F HLFDGY+ LVK+ F+  GR+ A HR +E++AYKAAKK+ +LCYREFS +PK 
Sbjct: 118 NIGDHDFRHLFDGYSTLVKLQFD-GGRIFAAHRLLESDAYKAAKKHNRLCYREFSETPKS 176

Query: 124 ----DNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTL 179
                N  + +GE+ +LFSG SLTDNAN G+ KLGDGR++CLTETQKGS++VD +TL+T+
Sbjct: 177 VIINKNPFSGIGEIVRLFSGESLTDNANTGVIKLGDGRVMCLTETQKGSILVDHETLETI 236

Query: 180 GKFEYSDPLGG-FIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRG 238
           GKFEY D L    IQS+HPIVT+ E  TL+PDL+ PGY VVRME G+N+R+V+GRV CR 
Sbjct: 237 GKFEYDDVLSDHMIQSAHPIVTETEMWTLIPDLVKPGYRVVRMEAGSNKREVVGRVRCRS 296

Query: 239 GP-APGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKAS 297
           G   PGWVHSF +TE+YVV+PEMPL+YSV++LL+AEP+ LY+FEW P+  AF+HV+ K +
Sbjct: 297 GSWGPGWVHSFAVTENYVVIPEMPLRYSVKNLLRAEPTPLYKFEWCPQDGAFIHVMSKLT 356

Query: 298 GKIAASVEVPLYMVFHFINAYEE-KDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFH 356
           G++ ASVEVP Y+ FHFINAYEE K+ DG+   +IADCCEHNADT I++ L L  LRS H
Sbjct: 357 GEVVASVEVPAYVTFHFINAYEEDKNGDGKATVIIADCCEHNADTRILDMLRLDTLRSSH 416

Query: 357 GQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGA 416
           G DVLPDAR+GRF IP DGS++GKLET ++ E+HGR +DMCSINP YLG+KYRY YA GA
Sbjct: 417 GHDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRAMDMCSINPLYLGQKYRYVYACGA 476

Query: 417 KRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGA 476
           +RPCNFPN+L+K+D+V++K KNW E G++PSEP FV RPGAT EDDGVVIS++SE+NGG+
Sbjct: 477 QRPCNFPNALSKVDIVEKKVKNWHEHGMIPSEPFFVPRPGATHEDDGVVISIVSEENGGS 536

Query: 477 YVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN 510
           + +LLDGS+FEEIARA+FP+GLPYG HGCW+P++
Sbjct: 537 FAILLDGSSFEEIARAKFPYGLPYGLHGCWIPKD 570
Cleaves the C(27) 10'-apo-beta-carotenal produced by CCD7. Produces one C(9) dialdehyde and the C(18) 13-apo-beta-carotenone required for production of a graft-transmissible inhibitor of axillary meristen development and shoot branching. Also active on other carotenoid substrates like licopene or zeaxanthin.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 5
>sp|Q9I993|BCDO1_CHICK Beta,beta-carotene 15,15'-monooxygenase OS=Gallus gallus GN=BCMO1 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXG8|BCDO2_MACFA Beta,beta-carotene 9',10'-oxygenase OS=Macaca fascicularis GN=BCO2 PE=2 SV=2 Back     alignment and function description
>sp|Q99NF1|BCDO2_MOUSE Beta,beta-carotene 9',10'-oxygenase OS=Mus musculus GN=Bco2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJS6|BCDO1_MOUSE Beta,beta-carotene 15,15'-monooxygenase OS=Mus musculus GN=Bcmo1 PE=1 SV=2 Back     alignment and function description
>sp|Q9YGX2|RPE65_CHICK Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 Back     alignment and function description
>sp|Q9YI25|RPE65_AMBTI Retinoid isomerohydrolase OS=Ambystoma tigrinum GN=RPE65 PE=2 SV=3 Back     alignment and function description
>sp|Q8AXN9|RPE65_CYNPY Retinoid isomerohydrolase OS=Cynops pyrrhogaster GN=RPE65 PE=2 SV=3 Back     alignment and function description
>sp|A9C3R9|RP65B_DANRE All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio GN=rpe65b PE=1 SV=1 Back     alignment and function description
>sp|A9C3R8|RP65C_DANRE Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
224142963538 predicted protein [Populus trichocarpa] 0.994 0.942 0.780 0.0
224092286557 predicted protein [Populus trichocarpa] 0.994 0.910 0.774 0.0
310896477556 carotenoid cleavage dioxygenase 8 [Actin 0.998 0.915 0.743 0.0
296081847563 unnamed protein product [Vitis vinifera] 0.994 0.900 0.745 0.0
225429936546 PREDICTED: carotenoid cleavage dioxygena 0.994 0.928 0.745 0.0
57116144556 Dad1/CCD8 [Petunia x hybrida] 0.994 0.911 0.739 0.0
57918684556 decreased apical dominance protein [Petu 0.996 0.913 0.738 0.0
356507925549 PREDICTED: carotenoid cleavage dioxygena 0.992 0.921 0.736 0.0
336044429557 carotenoid cleavage dioxygenase 8 [Solan 0.984 0.901 0.736 0.0
449461315547 PREDICTED: carotenoid cleavage dioxygena 0.949 0.884 0.759 0.0
>gi|224142963|ref|XP_002324797.1| predicted protein [Populus trichocarpa] gi|222866231|gb|EEF03362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/510 (78%), Positives = 451/510 (88%), Gaps = 3/510 (0%)

Query: 1   MISNVASHQSPASVPERES-CAEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNG 59
           +++ VA+ Q+P  +P  E   A  RNHVAWTSV+QERWEGEL VEGEIP WLNGTYLRNG
Sbjct: 30  VVTKVAT-QAPTVIPSLEKELAGDRNHVAWTSVQQERWEGELAVEGEIPLWLNGTYLRNG 88

Query: 60  PGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSV 119
           PG+WHIG +NF HLFDGYA LV++HFE NGRLIAGHRQIE+EAYKAAK N KLCYREFS 
Sbjct: 89  PGLWHIGSYNFRHLFDGYATLVRLHFE-NGRLIAGHRQIESEAYKAAKNNNKLCYREFSE 147

Query: 120 SPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTL 179
            PK DNFLAY+GELA LFSGASLTDNAN G+ KLGDGR++CLTETQKGS+IVDP+TLDTL
Sbjct: 148 VPKFDNFLAYIGELANLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIVDPNTLDTL 207

Query: 180 GKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGG 239
           GKFEYSD LGG I S+HPIVTD EFLTLLPDLL PGYLVVRMEPG+NERKVIGRV+CRGG
Sbjct: 208 GKFEYSDSLGGLIHSAHPIVTDTEFLTLLPDLLKPGYLVVRMEPGSNERKVIGRVDCRGG 267

Query: 240 PAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGK 299
           PAPGWVHSF +TEHYV+VPEMPL+Y  Q+LLKAEP+ LY+FEW P+ K F+HV+CKASG 
Sbjct: 268 PAPGWVHSFPVTEHYVIVPEMPLRYCAQNLLKAEPTPLYKFEWHPDSKGFMHVMCKASGN 327

Query: 300 IAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQD 359
           I ASVEVPLY+ FHFINAYEEKD+DGRV A+IADCCEH+ADTTI+E L L+NLR+F G+D
Sbjct: 328 IVASVEVPLYVTFHFINAYEEKDEDGRVTAIIADCCEHHADTTILERLRLQNLRAFMGED 387

Query: 360 VLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAKRP 419
           VLPDARVGRF IP DGS +GKLE  +DPEEHG+G+DMCS NPAYLGKKYRYAYA GA+RP
Sbjct: 388 VLPDARVGRFIIPLDGSPYGKLEAALDPEEHGKGMDMCSFNPAYLGKKYRYAYACGAQRP 447

Query: 420 CNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGAYVV 479
           CNFPN+LTK+DL ++KAKNW EEG VPSEP FVARPGAT+EDDGV+ISMISEKNG  Y +
Sbjct: 448 CNFPNTLTKIDLFEKKAKNWYEEGAVPSEPFFVARPGATEEDDGVLISMISEKNGDGYAL 507

Query: 480 LLDGSTFEEIARARFPFGLPYGFHGCWVPE 509
           LLDGSTFEEIARA+FP+GLPYG HGCWVP+
Sbjct: 508 LLDGSTFEEIARAKFPYGLPYGLHGCWVPK 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092286|ref|XP_002309543.1| predicted protein [Populus trichocarpa] gi|222855519|gb|EEE93066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|310896477|gb|ADP37984.1| carotenoid cleavage dioxygenase 8 [Actinidia chinensis] Back     alignment and taxonomy information
>gi|296081847|emb|CBI20852.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429936|ref|XP_002281239.1| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|57116144|gb|AAW33596.1| Dad1/CCD8 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|57918684|gb|AAW59435.1| decreased apical dominance protein [Petunia x hybrida] Back     alignment and taxonomy information
>gi|356507925|ref|XP_003522713.1| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|336044429|gb|AEH96363.1| carotenoid cleavage dioxygenase 8 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449461315|ref|XP_004148387.1| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Cucumis sativus] gi|449531816|ref|XP_004172881.1| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2134093570 CCD8 "carotenoid cleavage diox 0.990 0.885 0.640 6.7e-191
FB|FBgn0002937620 ninaB "neither inactivation no 0.627 0.516 0.295 4.7e-49
ZFIN|ZDB-GENE-060421-7448555 bco2b "beta-carotene oxygenase 0.584 0.536 0.292 4.2e-45
UNIPROTKB|Q8HXG8556 BCO2 "Beta,beta-carotene 9',10 0.586 0.537 0.299 1.2e-44
ZFIN|ZDB-GENE-010509-1549 bco2l "beta-carotene 15, 15-di 0.601 0.559 0.286 4.5e-44
MGI|MGI:2177469532 Bco2 "beta-carotene oxygenase 0.631 0.605 0.276 7.5e-44
UNIPROTKB|E1C8E0548 BCO2 "Uncharacterized protein" 0.596 0.554 0.265 1.2e-43
UNIPROTKB|Q9YGX2533 RPE65 "Retinoid isomerohydrola 0.645 0.617 0.285 3.5e-43
UNIPROTKB|Q9BYV7579 BCO2 "Beta,beta-carotene 9',10 0.631 0.556 0.286 4.3e-43
UNIPROTKB|F1S830533 RPE65 "Uncharacterized protein 0.717 0.686 0.274 8.1e-43
TAIR|locus:2134093 CCD8 "carotenoid cleavage dioxygenase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
 Identities = 329/514 (64%), Positives = 422/514 (82%)

Query:     5 VASHQSPASVPERESC-AEHRNHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVW 63
             V +  +P+ +PE+E    E R HVAWTSV+QE WEGEL V+G+IP+WLNGTYLRNGPG+W
Sbjct:    58 VINSAAPSPLPEKEKVEGERRCHVAWTSVQQENWEGELTVQGKIPTWLNGTYLRNGPGLW 117

Query:    64 HIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKP 123
             +IG+ +F HLFDGY+ LVK+ F+  GR+ A HR +E++AYKAAKK+ +LCYREFS +PK 
Sbjct:   118 NIGDHDFRHLFDGYSTLVKLQFD-GGRIFAAHRLLESDAYKAAKKHNRLCYREFSETPKS 176

Query:   124 ----DNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTL 179
                  N  + +GE+ +LFSG SLTDNAN G+ KLGDGR++CLTETQKGS++VD +TL+T+
Sbjct:   177 VIINKNPFSGIGEIVRLFSGESLTDNANTGVIKLGDGRVMCLTETQKGSILVDHETLETI 236

Query:   180 GKFEYSDPLGG-FIQSSHPIVTDDEFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRG 238
             GKFEY D L    IQS+HPIVT+ E  TL+PDL+ PGY VVRME G+N+R+V+GRV CR 
Sbjct:   237 GKFEYDDVLSDHMIQSAHPIVTETEMWTLIPDLVKPGYRVVRMEAGSNKREVVGRVRCRS 296

Query:   239 GP-APGWVHSFTMTEHYVVVPEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKAS 297
             G   PGWVHSF +TE+YVV+PEMPL+YSV++LL+AEP+ LY+FEW P+  AF+HV+ K +
Sbjct:   297 GSWGPGWVHSFAVTENYVVIPEMPLRYSVKNLLRAEPTPLYKFEWCPQDGAFIHVMSKLT 356

Query:   298 GKIAASVEVPLYMVFHFINAYEE-KDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFH 356
             G++ ASVEVP Y+ FHFINAYEE K+ DG+   +IADCCEHNADT I++ L L  LRS H
Sbjct:   357 GEVVASVEVPAYVTFHFINAYEEDKNGDGKATVIIADCCEHNADTRILDMLRLDTLRSSH 416

Query:   357 GQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGA 416
             G DVLPDAR+GRF IP DGS++GKLET ++ E+HGR +DMCSINP YLG+KYRY YA GA
Sbjct:   417 GHDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRAMDMCSINPLYLGQKYRYVYACGA 476

Query:   417 KRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGGA 476
             +RPCNFPN+L+K+D+V++K KNW E G++PSEP FV RPGAT EDDGVVIS++SE+NGG+
Sbjct:   477 QRPCNFPNALSKVDIVEKKVKNWHEHGMIPSEPFFVPRPGATHEDDGVVISIVSEENGGS 536

Query:   477 YVVLLDGSTFEEIARARFPFGLPYGFHGCWVPEN 510
             + +LLDGS+FEEIARA+FP+GLPYG HGCW+P++
Sbjct:   537 FAILLDGSSFEEIARAKFPYGLPYGLHGCWIPKD 570
GO:0009507 "chloroplast" evidence=ISM;RCA;NAS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0010223 "secondary shoot formation" evidence=IGI;IMP
GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009850 "auxin metabolic process" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0016121 "carotene catabolic process" evidence=IDA
GO:0016124 "xanthophyll catabolic process" evidence=IDA
GO:0009926 "auxin polar transport" evidence=IMP
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
FB|FBgn0002937 ninaB "neither inactivation nor afterpotential B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-7448 bco2b "beta-carotene oxygenase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXG8 BCO2 "Beta,beta-carotene 9',10'-oxygenase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010509-1 bco2l "beta-carotene 15, 15-dioxygenase 2, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2177469 Bco2 "beta-carotene oxygenase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8E0 BCO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9YGX2 RPE65 "Retinoid isomerohydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BYV7 BCO2 "Beta,beta-carotene 9',10'-oxygenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S830 RPE65 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VY26CCD8_ARATH1, ., 1, 4, ., 9, 9, ., n, 50.64000.99010.8859yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.990.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-118
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 5e-61
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 2e-26
PLN02491545 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava 2e-15
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 2e-10
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 4e-06
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information 
 Score =  355 bits (914), Expect = e-118
 Identities = 156/498 (31%), Positives = 230/498 (46%), Gaps = 47/498 (9%)

Query: 28  AWTSVKQERWEGE-LVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFE 86
            +  V++E  + E L VEGEIP+ LNGT  RNGPG    G F + H FDG  ML    F 
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRF- 59

Query: 87  KNGRLIAGHRQIETEAYKAAKK-NKKLCYREFSVSP--KPDNFLAYVGELAKLFSGASLT 143
           ++GR+   +R + TE YKA +   ++L   EF         N    V           L 
Sbjct: 60  EDGRVTYRNRFVRTEGYKAERAAGRRLYPGEFGTLKPDPCKNIFPRVPG--------KLK 111

Query: 144 DNANNGIYKLGDGRIICLTETQKGS-VIVDPDTLDTLGKFEYSDPLG-GFIQSSHPIV-- 199
           + AN  +   G GR++ L E   G    +DP+TL+TLG++++   L  G   ++HP V  
Sbjct: 112 NVANTNVVYHG-GRLLALWEA--GLPYRLDPETLETLGRYDFGGKLKPGPPFTAHPKVDP 168

Query: 200 TDDEFLT--LLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVV 257
              E +   L      P      ++      K++  V     P P  +H F +TE+YV+ 
Sbjct: 169 VTGELVNFGLSLGPKPPYLTYYEVDADG---KLVREVPIFSLPGPSMIHDFAITENYVIF 225

Query: 258 PEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGK-IAASVEVPLYMVFHFIN 316
           P++PL +    LL    +      W PE+     V+ +  GK      E P   VFH  N
Sbjct: 226 PDLPLVFDPLRLLLGGRADP--LRWDPEKPTRFGVIPRRGGKSDVRWFEAPPCFVFHTAN 283

Query: 317 AYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGS 376
           A+EE  +      ++ D C ++ D   ++   L NLR     D  P +R+ R+ +     
Sbjct: 284 AWEEGGE------IVLDACRYD-DPDFLDPFYLDNLRPDAFADKKPRSRLTRWRLDLKTG 336

Query: 377 QFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGA---KRPCNFPNSLTKLDLVK 433
                  V +     R  +   INP Y+G+KYRY Y   A          + L K+DL  
Sbjct: 337 -----GDVTEEVLLDRPCEFPRINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLET 391

Query: 434 QKAKNWCE-EGIVPSEPLFVARPGATDEDDGVVISMI-SEKNGGAYVVLLDGSTFEE--I 489
            + + W    G  P EP+FV RPGA DEDDG ++S++  E  G + +++LD     E  +
Sbjct: 392 GEVQVWSFGPGCYPGEPIFVPRPGAADEDDGWLLSVVYDEDTGRSELLILDAKDLTEGPV 451

Query: 490 ARARFPFGLPYGFHGCWV 507
           AR   P  +PYGFHG WV
Sbjct: 452 ARVELPHRVPYGFHGTWV 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 99.78
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-114  Score=873.77  Aligned_cols=458  Identities=29%  Similarity=0.464  Sum_probs=384.8

Q ss_pred             cCcCcCccccceeeeeeeeE-EEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeC-CeEEEeeeccCc
Q 010461           23 HRNHVAWTSVKQERWEGELV-VEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKN-GRLIAGHRQIET  100 (510)
Q Consensus        23 ~~~~~~~~~~~~E~~~~~l~-V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~d-G~v~y~~R~V~T  100 (510)
                      ..|.++|+|+++|.+...|+ |+|+||++|+|||||||||++++++...+||||||||||+|.|. | |+|+||||||||
T Consensus        20 ~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~-~gg~a~yrnrfVrT   98 (490)
T COG3670          20 PYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFR-DGGRATYRNRFVRT   98 (490)
T ss_pred             hhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEec-CCCceEEEEEEEee
Confidence            48999999999999888888 99999999999999999999999999999999999999999999 8 599999999999


Q ss_pred             HHHHHHHHcCCcccccccCCCCCc-chHHHHHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCCCCcee
Q 010461          101 EAYKAAKKNKKLCYREFSVSPKPD-NFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTL  179 (510)
Q Consensus       101 ~~~~~e~~ag~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~TLeT~  179 (510)
                      .+|.+|++|||+||+++++.+.+. .+-++         ....||.|||||+.|+ ++|+||||+| .||+|||.||+|+
T Consensus        99 ~g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~---------~~~lkn~aNTsVi~~~-~~LlalwEgG-~pyrLdp~tL~Tl  167 (490)
T COG3670          99 QGYLAENEAGKPLWGGLGETQPPGVRPHSR---------TGDLKNAANTSVIMHG-DELLALWEGG-SPYRLDPDTLETL  167 (490)
T ss_pred             ceeehhhhcCcceeccccccCCCCcCcCcc---------ccccccCCccceEeeh-hHHHHHHhcC-CccccChhHhhhc
Confidence            999999999999999987743221 11000         2357999999999998 8999999998 6999999999999


Q ss_pred             cccccCCCCCccccCCCCccCCC--CceecccCCCCCcEEEEEEcCCCCceeEEEEEecCCCCCCccceeeeecCcEEEE
Q 010461          180 GKFEYSDPLGGFIQSSHPIVTDD--EFLTLLPDLLNPGYLVVRMEPGTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVVV  257 (510)
Q Consensus       180 g~~~~~~~l~~~~~tAHPk~dp~--e~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~iHDf~vTeny~V~  257 (510)
                      |+.+|+|.-.+.+||||||+||.  |+++|+++...+..+++.++.....++. ..+   .+|.+.|||||++|+||+||
T Consensus       168 G~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~-~~i---~lpg~~~~HDFa~T~~y~If  243 (490)
T COG3670         168 GKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRT-VDI---PLPGPPMMHDFAITENYLIF  243 (490)
T ss_pred             ChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEe-eee---ecCCCccceeeeecCceEEE
Confidence            99999996446789999999999  8999999876665567777755432221 123   36899999999999999999


Q ss_pred             ecCCccccHHHHhccCCCccceeeecCCCCeEEEEEeCCCCceeEEEEcCCceeEeeeceeeccCCCCceEEEEeccccc
Q 010461          258 PEMPLQYSVQSLLKAEPSALYQFEWRPERKAFLHVVCKASGKIAASVEVPLYMVFHFINAYEEKDKDGRVIAVIADCCEH  337 (510)
Q Consensus       258 ~~~P~~~~~~~~~~g~~~~~~~~~w~~~~~t~~~VIpR~~~~~v~~~~~~~~f~fH~~NayE~~~~~g~~~~iv~D~~~~  337 (510)
                      ++.|+.+|+...+.+.....+++.|+|+.|+||.||||.+++.|||||+++||+||+.||||+.|  |   .|.+|+|++
T Consensus       244 ~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d--~---~v~~d~~~~  318 (490)
T COG3670         244 FDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGD--E---VVLVDFLRY  318 (490)
T ss_pred             EeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCC--C---cEEEEEEee
Confidence            99999999644445665567899999999999999999843689999999999999999999987  3   699999999


Q ss_pred             CCchhHHhhhhhcccccCCCCCCCCCcceEEEEEecCCCCCcceeeecCCCCcCCcccCCccCCCCCCCCcceeEEeccc
Q 010461          338 NADTTIIETLSLKNLRSFHGQDVLPDARVGRFTIPFDGSQFGKLETVMDPEEHGRGVDMCSINPAYLGKKYRYAYAIGAK  417 (510)
Q Consensus       338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~in~~~~g~~yry~y~~~~~  417 (510)
                      ++ .+...+ ........ .......++|+||+|+|+++++.  ++.++    ++++|||+||+++.|++|||+|+++.+
T Consensus       319 ~~-~~~~~~-~~~~~~~g-~~~~~a~~~L~R~~lnl~tg~v~--~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~r  389 (490)
T COG3670         319 DD-FSQTLD-TLGEGPGG-DFRTLAPPRLHRWTLNLKTGKVA--EEQLD----DRACEFPRINPRYVGQPYRYTYMSGAR  389 (490)
T ss_pred             cc-cccccc-cccccccc-cccccCCCcceEEEEccccchhH--HHhhh----hhhcccCccChhhcCCceEEEEEeccc
Confidence            83 211111 11111110 00111258999999999987642  33444    478999999999999999999999766


Q ss_pred             CCCCCCCe---EEEEeccCCCeeEEe-cCCccCCccEEeeCCCCCCCCCcEEEEEEEcC-CCceEEEEEecCCccc--eE
Q 010461          418 RPCNFPNS---LTKLDLVKQKAKNWC-EEGIVPSEPLFVARPGATDEDDGVVISMISEK-NGGAYVVLLDGSTFEE--IA  490 (510)
Q Consensus       418 ~~~~~~~~---lvk~D~~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~Ll~~v~d~-~~~S~L~VlDA~~l~~--vA  490 (510)
                      .....+++   |+|+|++||+.+.|+ ++++|++||+|||||++++|||||||++|+|. .++|+|+||||++++.  ||
T Consensus       390 p~~~l~~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa  469 (490)
T COG3670         390 PGTFLFQGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIA  469 (490)
T ss_pred             CCccchhhcceeEEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcce
Confidence            55445555   999999999999995 89999999999999999999999999999996 5899999999999874  99


Q ss_pred             EEEcCCCCCCCcccccccCC
Q 010461          491 RARFPFGLPYGFHGCWVPEN  510 (510)
Q Consensus       491 r~~lP~~iP~GfHG~w~~~~  510 (510)
                      |++||++||+||||+|++.+
T Consensus       470 ~l~Lp~~vP~gfHG~w~~~~  489 (490)
T COG3670         470 RLALPQRVPYGFHGNWVPTE  489 (490)
T ss_pred             EEeccccccccccccccccc
Confidence            99999999999999999853

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
3fsn_A533 Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut 4e-45
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 4e-28
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 1e-18
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 61/513 (11%)
Query: 43  VEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEA 102
           V G IP WL G+ LR GPG++ +G   F HLFDG A+L K  F K G +    R I T+A
Sbjct: 30  VTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDF-KEGHVTYHRRFIRTDA 88
Query: 103 YKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLT 162
           Y  A   K++   EF     PD            F G  +TDNA   IY +G+    C T
Sbjct: 89  YVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYAC-T 147
Query: 163 ETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDDEFLTLLPDLLNP----GYLV 218
           ET   +  V+P+TL+T+ + +  + +     ++HP + +D  +  + +         Y +
Sbjct: 148 ETNFITK-VNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNI 206
Query: 219 VRMEPGTNERK-------VIGRVNCRGGPAPGWVHSFTMTEHYVVVPEMPLQYSVQSLLK 271
           V++ P   +++       ++ +  C     P +VHSF +T +Y+V  E P++ ++   L 
Sbjct: 207 VKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLS 266
Query: 272 A----EPSALYQFEWRPERKAFLHVVCKASGK-IAASVEVPLYMVFHFINAYEEKDKDGR 326
           +      + +  FE       +LH+  K   K I        + +FH IN YE+ +    
Sbjct: 267 SWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE---- 322
Query: 327 VIAVIADCCEHNADTTIIETLSLKNLRSFHGQDVLPDAR------VGRFTIPF--DGSQF 378
              +I D C       +   L L NLR  + ++V  +AR      V R+ +P   D +  
Sbjct: 323 --FLIVDLCCWKGFEFVYNYLYLANLRE-NWEEVKKNARKAPQPEVRRYVLPLNIDKADT 379
Query: 379 GKL----------------ETV-MDPEEHGRG----VDMCSIN-PAYLGKKYRYAYAIGA 416
           GK                 ET+ ++PE    G     +   IN   Y GK Y YAY +G 
Sbjct: 380 GKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGL 439
Query: 417 KRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDDGVVISMISEKNGG- 475
                 P+ L KL++  ++   W E    PSEP+FV+ P A +EDDGVV+S++     G 
Sbjct: 440 NH--FVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQ 497
Query: 476 --AYVVLLDGSTFEEIARARFPFGLPYGFHGCW 506
             AY+++L+     E+ARA     +P  FHG +
Sbjct: 498 KPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 530
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-125
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 1e-123
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 3e-93
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
 Score =  375 bits (964), Expect = e-125
 Identities = 142/529 (26%), Positives = 225/529 (42%), Gaps = 59/529 (11%)

Query: 28  AWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEK 87
            + +V++        V G IP WL G+ LR GPG++ +G   F HLFDG A+L K  F K
Sbjct: 15  LFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDF-K 73

Query: 88  NGRLIAGHRQIETEAYKAAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNAN 147
            G +    R I T+AY  A   K++   EF     PD            F G  +TDNA 
Sbjct: 74  EGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNAL 133

Query: 148 NGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEYSDPLGGFIQSSHPIVTDD----E 203
             IY +G       TET      V+P+TL+T+ + +  + +     ++HP + +D     
Sbjct: 134 VNIYPVG-EDYYACTETNFI-TKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYN 191

Query: 204 FLTLLPDLLNPGYLVVRMEP-------GTNERKVIGRVNCRGGPAPGWVHSFTMTEHYVV 256
                    +  Y +V++ P         ++ +++ +  C     P +VHSF +T +Y+V
Sbjct: 192 IGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIV 251

Query: 257 VPEMPLQYSVQSLLKAEP----SALYQFEWRPERKAFLHVVCKASGK-IAASVEVPLYMV 311
             E P++ ++   L +      + +  FE       +LH+  K   K I        + +
Sbjct: 252 FVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNL 311

Query: 312 FHFINAYEEKDKDGRVIAVIADCCEHNADTTIIETLSLKNLRSFHGQ-----DVLPDARV 366
           FH IN YE+ +       +I D C       +   L L NLR    +        P   V
Sbjct: 312 FHHINTYEDHEF------LIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEV 365

Query: 367 GRFTIPFDG-----------------------SQFGKLETVMDPEEHGRGVDMCSINP-A 402
            R+ +P +                         +   LE  +      +  +   IN   
Sbjct: 366 RRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQK 425

Query: 403 YLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGATDEDD 462
           Y GK Y YAY +G       P+ L KL++  ++   W E    PSEP+FV+ P A +EDD
Sbjct: 426 YGGKPYTYAYGLGLNHF--VPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDD 483

Query: 463 GVVISMISEKNGG---AYVVLLDGSTFEEIARARFPFGLPYGFHGCWVP 508
           GVV+S++     G   AY+++L+     E+ARA     +P  FHG +  
Sbjct: 484 GVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKK 532
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure
Probab=100.00  E-value=1.1e-114  Score=936.79  Aligned_cols=472  Identities=30%  Similarity=0.503  Sum_probs=385.2

Q ss_pred             cCcCccccceeeeeeeeEEEecCCCCCceEEEEECCCCCCCCCccccccCCccccEEEEEEeeCCeEEEeeeccCcHHHH
Q 010461           25 NHVAWTSVKQERWEGELVVEGEIPSWLNGTYLRNGPGVWHIGEFNFGHLFDGYAMLVKVHFEKNGRLIAGHRQIETEAYK  104 (510)
Q Consensus        25 ~~~~~~~~~~E~~~~~l~V~G~iP~~L~Gt~~RnGP~~~~~g~~~~~H~FDGdGmv~~~~f~~dG~v~y~~R~V~T~~~~  104 (510)
                      ....|+|+.|+....+|+|+|+||+||+|||||||||++++|+.+++||||||||||+|+|+ ||+|+|+||||||++|+
T Consensus        12 ~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~-~G~v~y~~R~v~T~~~~   90 (533)
T 3kvc_A           12 YKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFK-EGHVTYHRRFIRTDAYV   90 (533)
T ss_dssp             GGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEE-TTEEEEEEEECCCHHHH
T ss_pred             hhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEe-CCEEEEEEEEecCHHHH
Confidence            45678988877777899999999999999999999999999888899999999999999999 99999999999999999


Q ss_pred             HHHHcCCcccccccCCCCCcchHHHHHHHhhhccCCCcCCccceeEEEeCCCeEEEeecCCCceeEeCCCCCceeccccc
Q 010461          105 AAKKNKKLCYREFSVSPKPDNFLAYVGELAKLFSGASLTDNANNGIYKLGDGRIICLTETQKGSVIVDPDTLDTLGKFEY  184 (510)
Q Consensus       105 ~e~~ag~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~~grllAl~E~g~~p~~lDp~TLeT~g~~~~  184 (510)
                      +|+++||++|++||+...++++.+.+..+.+.+.....+|+|||||++|+ ||||||||++ .||+|||+||||+|.++|
T Consensus        91 ~e~~agr~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~-g~LlAl~E~~-~p~~iDp~tLeT~G~~d~  168 (533)
T 3kvc_A           91 RAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVG-EDYYACTETN-FITKVNPETLETIKQVDL  168 (533)
T ss_dssp             HHHHHTSCCSCBTTBCC-------------------CCCCCCCSEEEEET-TEEEEECSSS-EEEEECTTTCCEEEEEEH
T ss_pred             HHHHcCCcceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEEC-CEEEEEEcCC-cCEEeChHHccccccccc
Confidence            99999999999999875555554444433444433356899999999997 8999999998 699999999999999999


Q ss_pred             CCCCCccccCCCCccCCC-CceecccCCCC---CcEEEEEEcCCC-------CceeEEEEEecCCCCCCccceeeeecCc
Q 010461          185 SDPLGGFIQSSHPIVTDD-EFLTLLPDLLN---PGYLVVRMEPGT-------NERKVIGRVNCRGGPAPGWVHSFTMTEH  253 (510)
Q Consensus       185 ~~~l~~~~~tAHPk~dp~-e~~~~~~~~~~---~~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~iHDf~vTen  253 (510)
                      ++.|++..||||||+||. |+++|++...+   +.|.++++++..       .+..++.++++.+++.|+|||||+||||
T Consensus       169 ~g~l~~~~~tAHPk~DptGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTen  248 (533)
T 3kvc_A          169 CNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPN  248 (533)
T ss_dssp             HHHSSCSCCCSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSS
T ss_pred             CCccCCCccCCCCccCCCCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCC
Confidence            999987789999999999 99999987653   568999987441       1234567888777789999999999999


Q ss_pred             EEEEecCCccccHHHHhcc----CCCccceeeecCCCCeEEEEEeCCCCce-eEEEEcCCceeEeeeceeeccCCCCceE
Q 010461          254 YVVVPEMPLQYSVQSLLKA----EPSALYQFEWRPERKAFLHVVCKASGKI-AASVEVPLYMVFHFINAYEEKDKDGRVI  328 (510)
Q Consensus       254 y~V~~~~P~~~~~~~~~~g----~~~~~~~~~w~~~~~t~~~VIpR~~~~~-v~~~~~~~~f~fH~~NayE~~~~~g~~~  328 (510)
                      |+||+++|+++|+.++++|    +.+.+++|.|+|++++||+||||++++. ++||++++||+||++|||||++      
T Consensus       249 y~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~~NA~Ee~~------  322 (533)
T 3kvc_A          249 YIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE------  322 (533)
T ss_dssp             EEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEEEEEEEETT------
T ss_pred             EEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEeeeeeEEeCC------
Confidence            9999999999999999887    5666789999999999999999998875 4899999999999999999754      


Q ss_pred             EEEecccccCCchhHHhhhhhcccccCC-C----CCCCCCcceEEEEEecCCCC-------------Ccc----------
Q 010461          329 AVIADCCEHNADTTIIETLSLKNLRSFH-G----QDVLPDARVGRFTIPFDGSQ-------------FGK----------  380 (510)
Q Consensus       329 ~iv~D~~~~~~~~~~~~~~~~~~l~~~~-~----~~~~~~~~l~R~~idl~~~~-------------~~~----------  380 (510)
                      +||+|+|+|+..+++++.+++++++... .    ....+.++|+||+|||+++.             +++          
T Consensus       323 ~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~  402 (533)
T 3kvc_A          323 FLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIW  402 (533)
T ss_dssp             EEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEE
T ss_pred             EEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCcee
Confidence            7999999999326677666666665310 0    01235679999999998641             010          


Q ss_pred             e-eeecCCCCcCC-cccCCccCC-CCCCCCcceeEEecccCCCCCCCeEEEEeccCCCeeEEecCCccCCccEEeeCCCC
Q 010461          381 L-ETVMDPEEHGR-GVDMCSINP-AYLGKKYRYAYAIGAKRPCNFPNSLTKLDLVKQKAKNWCEEGIVPSEPLFVARPGA  457 (510)
Q Consensus       381 ~-~~~l~~~~~~~-~~EfP~in~-~~~g~~yry~y~~~~~~~~~~~~~lvk~D~~tg~~~~w~~~~~~~~EPvFVPrp~~  457 (510)
                      + ++.++.  .+. ++|||+||+ ++.||+|||+|+++...  ..+++|+|+|++||+.+.|+++++++|||+|||||++
T Consensus       403 ~~~~~l~~--~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~~--~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~  478 (533)
T 3kvc_A          403 LEPEVLFS--GPRQAFEFPQINYQKYGGKPYTYAYGLGLNH--FVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDA  478 (533)
T ss_dssp             EECEEEEC--BTTEEEEEEECCHHHHTTSCCCEEEEEEEET--TEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTC
T ss_pred             eeeeeecc--CCcccccCceECHHHhCCCcccEEEEeccCC--CCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCC
Confidence            0 112210  125 799999999 79999999999987653  4579999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEcCC---CceEEEEEecCCccceEEEEcCCCCCCCcccccccC
Q 010461          458 TDEDDGVVISMISEKN---GGAYVVLLDGSTFEEIARARFPFGLPYGFHGCWVPE  509 (510)
Q Consensus       458 ~~EDDG~Ll~~v~d~~---~~S~L~VlDA~~l~~vAr~~lP~~iP~GfHG~w~~~  509 (510)
                      ++|||||||++|+|..   ++|+|+||||++|++|||++||++||+||||+|+++
T Consensus       479 ~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~vArv~lP~rvP~GfHG~w~~~  533 (533)
T 3kvc_A          479 LEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS  533 (533)
T ss_dssp             CSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCEEEEEEESSCCCCCCEEEEEEC
T ss_pred             CCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChhhEEEEeCCCCCCCccccccCC
Confidence            9999999999999963   568999999999999999999999999999999974
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00