Citrus Sinensis ID: 010829

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MLSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
cccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHccccHHHHHHHHHccccHHcHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEHHHHcHHHHHHHHHHHHccccccccccccccc
ccccHHHHHHHEcccccccccccccccccccccccccHHHHHHHHHcHccccccccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHEHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHccccEEEccccccccEEEcccccccHHHHHHHHHcHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
MLSNLWNKISLSLqqncegsvfdplginpdvcsHLNSTWESFLSLlsptfestsgtkreksssarGVAAamedssidfgdffkgplpgkFLKLLGYLALSRlgiyiplggvnreafvgnldqnsllstldsfsgggigrlgicslgivpfINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLylrpyvndfstdwVLTSVTLLTLGSAFTTYIGErisdlklgngtsLLIFTSIISylpasfgrtvaeafqdgnyiGLATIIISFILLVLGIVYVqeaerkipinyasrytsrsgglqrsaylpfkvnssgvmpiifstsslalpgtlaRFTGIAALKKAAVAlnpggsfylptnILLIAFFNYYYTflqldpddvsEQLKrqgasiplvrpgksTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQkykniefydidsygs
MLSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTfestsgtkreksssarGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASrytsrsgglqRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQgasiplvrpgkSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEiisqkykniefydidsygs
MLSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDffkgplpgkflkllgYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFstdwvltsvtlltlGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
****LWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLL*****************************IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDL*******GRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPD************IPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDID****
*********SLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFL********************************IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQK****AGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYT*****LQ**AYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDI*****
MLSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPT*********************MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
*LSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTF****************VA*AMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDI*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLSNLWNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query499 2.2.26 [Sep-21-2011]
Q38885551 Preprotein translocase su yes no 0.985 0.892 0.863 0.0
Q6ZG25556 Preprotein translocase su yes no 0.957 0.859 0.854 0.0
O63066553 Preprotein translocase su N/A no 0.959 0.866 0.842 0.0
Q9XQU4527 Preprotein translocase su N/A no 0.943 0.893 0.827 0.0
P93690545 Preprotein translocase su N/A no 0.951 0.871 0.848 0.0
P77964442 Protein translocase subun N/A no 0.779 0.880 0.422 4e-86
P0A4H1439 Protein translocase subun yes no 0.799 0.908 0.423 4e-86
P0A4H0439 Protein translocase subun yes no 0.799 0.908 0.423 4e-86
Q1XDJ1411 Protein translocase subun N/A no 0.813 0.987 0.405 2e-85
P51297411 Protein translocase subun N/A no 0.765 0.929 0.414 2e-85
>sp|Q38885|SCY1_ARATH Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2 Back     alignment and function desciption
 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/492 (86%), Positives = 459/492 (93%)

Query: 6   WNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSAR 65
           WN   +   ++ E SVFDPLGINPD  S L+S WESF+SLLSP+FES+SG +R+K SS R
Sbjct: 58  WNLGLVINSRSSEASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGR 117

Query: 66  GVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSL 125
           GVAAA+EDSSIDFGDFFKGPLPGKFLKLLG+LALSRLGIYIPLGGVNREAFVGNLDQNS+
Sbjct: 118 GVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSI 177

Query: 126 LSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQY 185
           LSTLD+FSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+EGEAGRKK+LQY
Sbjct: 178 LSTLDTFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQY 237

Query: 186 TRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGN 245
           TRYASVGFAIVQAIGQV YLRPYVNDFST+WV++SVTLLTLGS  TTYIGERISDLKLGN
Sbjct: 238 TRYASVGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGN 297

Query: 246 GTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 305
           GTSLLIFTSIISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+
Sbjct: 298 GTSLLIFTSIISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPL 357

Query: 306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 365
           NYASRYTS++GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL
Sbjct: 358 NYASRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFAL 417

Query: 366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
            PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTA F+KTVL
Sbjct: 418 TPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTALFIKTVL 477

Query: 426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
            RISVLGS FLA+LAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK
Sbjct: 478 GRISVLGSAFLAVLAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 537

Query: 486 YKNIEFYDIDSY 497
           YKNIEFY++D Y
Sbjct: 538 YKNIEFYELDKY 549
Involved in protein export. Probably interacts with other proteins to allow the translocation of proteins across the chloroplast thylakoid membranes. Required for normal greening during embryogenesis. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6ZG25|SECY_ORYSJ Preprotein translocase subunit SECY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|O63066|SECY_MAIZE Preprotein translocase subunit SECY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P93690|SECY_SPIOL Preprotein translocase subunit SECY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P77964|SECY_SYNY3 Protein translocase subunit SecY OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
255584934557 protein translocase secy subunit, putati 0.969 0.868 0.902 0.0
449524114546 PREDICTED: preprotein translocase subuni 0.979 0.895 0.882 0.0
224142301478 SecY protein [Populus trichocarpa] gi|22 0.955 0.997 0.906 0.0
15224214551 Preprotein translocase subunit secY [Ara 0.985 0.892 0.863 0.0
297836616549 hypothetical protein ARALYDRAFT_480774 [ 0.985 0.896 0.863 0.0
449464360571 PREDICTED: preprotein translocase subuni 0.969 0.847 0.868 0.0
356517020540 PREDICTED: preprotein translocase subuni 0.981 0.907 0.847 0.0
1049293551 SecY homolog; targetted to the thylakoid 0.985 0.892 0.863 0.0
218200780 1155 hypothetical protein OsI_28473 [Oryza sa 0.989 0.427 0.832 0.0
115475569556 Os08g0254500 [Oryza sativa Japonica Grou 0.957 0.859 0.854 0.0
>gi|255584934|ref|XP_002533181.1| protein translocase secy subunit, putative [Ricinus communis] gi|223527015|gb|EEF29204.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/491 (90%), Positives = 464/491 (94%), Gaps = 7/491 (1%)

Query: 6   WNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSAR 65
           WN        +CEGSVFDPLGIN D  S +N+ WES L+LLSP FES S TKR+K S AR
Sbjct: 70  WNT------NSCEGSVFDPLGINTDEYSGVNAAWESILALLSPIFESASSTKRDKPS-AR 122

Query: 66  GVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSL 125
           GVAAA+EDSSIDFGDFFKGPLPGKFLKLLG+LALSRLGIYIPLGGVNR+AFVGNLDQNSL
Sbjct: 123 GVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNRDAFVGNLDQNSL 182

Query: 126 LSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQY 185
           LSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQKREGEAGRKK+LQY
Sbjct: 183 LSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQY 242

Query: 186 TRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGN 245
           TRYASVGFAIVQAIGQVLYLRPYVNDFST WVL+SVTLLTLGS FTTY+GER SDLKLGN
Sbjct: 243 TRYASVGFAIVQAIGQVLYLRPYVNDFSTQWVLSSVTLLTLGSVFTTYLGERTSDLKLGN 302

Query: 246 GTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 305
           GTSLLIFTSIISYLPASFGRTVA+AFQDGNY+GLATIIISF LLVLGIVYVQEAERKIP+
Sbjct: 303 GTSLLIFTSIISYLPASFGRTVAQAFQDGNYVGLATIIISFFLLVLGIVYVQEAERKIPL 362

Query: 306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 365
           NYASRYTSR+GGLQ+SAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI+ALKKAAVAL
Sbjct: 363 NYASRYTSRTGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKKAAVAL 422

Query: 366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
           NPGG+FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIP VRPGKSTAAFLKTVL
Sbjct: 423 NPGGAFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPQVRPGKSTAAFLKTVL 482

Query: 426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
           SRISVLGS FLAILAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK
Sbjct: 483 SRISVLGSGFLAILAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 542

Query: 486 YKNIEFYDIDS 496
           YKNIEFYDID+
Sbjct: 543 YKNIEFYDIDN 553

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449524114|ref|XP_004169068.1| PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142301|ref|XP_002324497.1| SecY protein [Populus trichocarpa] gi|222865931|gb|EEF03062.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15224214|ref|NP_179461.1| Preprotein translocase subunit secY [Arabidopsis thaliana] gi|12643748|sp|Q38885.2|SCY1_ARATH RecName: Full=Preprotein translocase subunit SCY1, chloroplastic; AltName: Full=CpSecY; Flags: Precursor gi|15983352|gb|AAL11544.1|AF424550_1 At2g18710/MSF3.9 [Arabidopsis thaliana] gi|4185137|gb|AAD08940.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] gi|16604410|gb|AAL24211.1| At2g18710/MSF3.9 [Arabidopsis thaliana] gi|17473607|gb|AAL38269.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] gi|27363258|gb|AAO11548.1| At2g18710/MSF3.9 [Arabidopsis thaliana] gi|330251702|gb|AEC06796.1| Preprotein translocase subunit secY [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297836616|ref|XP_002886190.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] gi|297332030|gb|EFH62449.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449464360|ref|XP_004149897.1| PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517020|ref|XP_003527188.1| PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|1049293|gb|AAB60305.1| SecY homolog; targetted to the thylakoid membrane; the protein has a chloroplast targetting signal, but the processing site is not known [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218200780|gb|EEC83207.1| hypothetical protein OsI_28473 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115475569|ref|NP_001061381.1| Os08g0254500 [Oryza sativa Japonica Group] gi|75294264|sp|Q6ZG25.1|SECY_ORYSJ RecName: Full=Preprotein translocase subunit SECY, chloroplastic; AltName: Full=CpSecY; Flags: Precursor gi|37572923|dbj|BAC98517.1| putative Preprotein translocase secY subunit, chloroplast precursor [Oryza sativa Japonica Group] gi|37573023|dbj|BAC98535.1| putative Preprotein translocase secY subunit, chloroplast precursor [Oryza sativa Japonica Group] gi|113623350|dbj|BAF23295.1| Os08g0254500 [Oryza sativa Japonica Group] gi|125602744|gb|EAZ42069.1| hypothetical protein OsJ_26630 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
TAIR|locus:2054038551 SCY1 "AT2G18710" [Arabidopsis 0.985 0.892 0.810 3.6e-208
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.771 0.871 0.345 6.2e-62
TIGR_CMR|GSU_2837435 GSU_2837 "preprotein transloca 0.771 0.885 0.348 1.3e-61
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.773 0.848 0.361 5e-60
TIGR_CMR|BA_0130433 BA_0130 "preprotein translocas 0.779 0.898 0.330 2.2e-59
UNIPROTKB|P78283444 secY "Protein translocase subu 0.797 0.896 0.322 2.7e-59
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.797 0.896 0.322 2.7e-59
TIGR_CMR|CHY_2289419 CHY_2289 "preprotein transloca 0.771 0.918 0.337 4e-58
NCBI_NP|NP_354903.2446 prlA "preprotein translocase s 0.773 0.865 0.351 1.7e-57
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.797 0.894 0.318 2.8e-57
TAIR|locus:2054038 SCY1 "AT2G18710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2013 (713.7 bits), Expect = 3.6e-208, P = 3.6e-208
 Identities = 399/492 (81%), Positives = 430/492 (87%)

Query:     6 WNKISLSLQQNCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSAR 65
             WN   +   ++ E SVFDPLGINPD  S L+S WESF+SLLSP+FES+SG +R+K SS R
Sbjct:    58 WNLGLVINSRSSEASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGR 117

Query:    66 GVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSL 125
             GVAAA+EDSSIDFGD               +LALSRLGIYIPLGGVNREAFVGNLDQNS+
Sbjct:   118 GVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSI 177

Query:   126 LSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQY 185
             LSTLD+FSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+EGEAGRKK+LQY
Sbjct:   178 LSTLDTFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQY 237

Query:   186 TRYASVGFAIVQAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGN 245
             TRYASVGFAIVQAIGQV YLRPYVNDF              GS  TTYIGERISDLKLGN
Sbjct:   238 TRYASVGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGN 297

Query:   246 GTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 305
             GTSLLIFTSIISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+
Sbjct:   298 GTSLLIFTSIISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPL 357

Query:   306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 365
             NYASRYTS++GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL
Sbjct:   358 NYASRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFAL 417

Query:   366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
              PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTA F+KTVL
Sbjct:   418 TPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTALFIKTVL 477

Query:   426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
              RISVLGS FLA+LAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK
Sbjct:   478 GRISVLGSAFLAVLAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 537

Query:   486 YKNIEFYDIDSY 497
             YKNIEFY++D Y
Sbjct:   538 YKNIEFYELDKY 549
GO:0009306 "protein secretion" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010027 "thylakoid membrane organization" evidence=ISS
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2837 GSU_2837 "preprotein translocase, SecY subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0130 BA_0130 "preprotein translocase, SecY subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2289 CHY_2289 "preprotein translocase, SecY subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
NCBI_NP|NP_354903.2 prlA "preprotein translocase subunit SecY" [Agrobacterium fabrum str. C58 (taxid:176299)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78283SECY_VIBCHNo assigned EC number0.32770.80360.9031yesno
Q38885SCY1_ARATHNo assigned EC number0.86380.98590.8929yesno
O63066SECY_MAIZENo assigned EC number0.84260.95990.8661N/Ano
Q9Z7S5SECY_CHLPNNo assigned EC number0.31670.81560.8905yesno
P43416SECY_STRSCNo assigned EC number0.33020.81960.9359yesno
P93690SECY_SPIOLNo assigned EC number0.84840.95190.8715N/Ano
Q7A468SECY_STAANNo assigned EC number0.36010.81160.9418yesno
P46785SECY_STRCONo assigned EC number0.33330.80960.9244yesno
Q7A086SECY_STAAWNo assigned EC number0.36010.81160.9418yesno
P28527SECY_GUITHNo assigned EC number0.39170.81160.9642yesno
P38376SECY_CORGLNo assigned EC number0.32190.80560.9136yesno
P38375SECY_BACHDNo assigned EC number0.34750.80560.9348yesno
Q5HDX8SECY_STAACNo assigned EC number0.36010.81160.9418yesno
Q05217SECY_STACTNo assigned EC number0.35930.81760.9488yesno
P43804SECY_HAEINNo assigned EC number0.34520.80160.9070yesno
Q6GEK3SECY_STAARNo assigned EC number0.36010.81160.9418yesno
Q9XQU4SECY_PEANo assigned EC number0.82780.94380.8937N/Ano
Q6G791SECY_STAASNo assigned EC number0.36010.81160.9418yesno
O08387SECY_STAA8No assigned EC number0.36010.81160.9418yesno
Q59916SECY_STRGRNo assigned EC number0.33020.81160.9267yesno
Q99S39SECY_STAAMNo assigned EC number0.36010.81160.9418yesno
Q6ZG25SECY_ORYSJNo assigned EC number0.85440.95790.8597yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 1e-138
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 1e-116
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 1e-103
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-103
pfam00344340 pfam00344, SecY, SecY translocase 1e-95
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 1e-68
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 3e-29
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 2e-26
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 5e-08
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information 
 Score =  404 bits (1041), Expect = e-138
 Identities = 160/422 (37%), Positives = 261/422 (61%), Gaps = 15/422 (3%)

Query: 78  FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 134
             + FK   L  + L  LG L + R+G YIP+ G++  A     DQ S  +L   + FSG
Sbjct: 5   LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSG 64

Query: 135 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 194
           G + R  I +LGI+P+I A I+ QLL  + PKL++L+K EGEAGR+K+ QYTRY +V  A
Sbjct: 65  GALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLA 123

Query: 195 IVQAIGQVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGT 247
            VQ+IG    L                 + LT V  LT G+ F  ++GE+I++  +GNG 
Sbjct: 124 FVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGNGI 183

Query: 248 SLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPIN 306
           SL+IF  I++ LP++ G+T   A     + +    +I+ F+ ++  +V+V++A+R+IP+ 
Sbjct: 184 SLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243

Query: 307 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAA-LKKAAVAL 365
           YA R   R     +S+YLP KVN +GV+P+IF++S L  P T+A+F G  + L+  A  L
Sbjct: 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYL 303

Query: 366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
           +PG   Y+    LLI FF ++YT +Q +P++++E LK+ G  IP +RPG+ TA +L  VL
Sbjct: 304 SPGSPLYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVL 363

Query: 426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
           +R++++G+++LA +A  P +++    +     F GTS+LI+VG A DT ++++++++S++
Sbjct: 364 TRLTLVGAIYLAFIALLPEILQNALGV--PFYFGGTSLLIVVGVALDTMKQIESQLMSRQ 421

Query: 486 YK 487
           Y+
Sbjct: 422 YE 423

Length = 426
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 499
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 90.71
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-100  Score=800.05  Aligned_cols=406  Identities=37%  Similarity=0.655  Sum_probs=361.0

Q ss_pred             hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 010829           78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV  156 (499)
Q Consensus        78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII  156 (499)
                      +.+++| +++|||++||++++++||+|++||+||+|.++..+.+++.....++|+|+||+++|+|+|+|||+||||||||
T Consensus        10 ~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyITASII   89 (436)
T COG0201          10 LSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYITASII   89 (436)
T ss_pred             hcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHHHHHHH
Confidence            445666 7899999999999999999999999999999887766555555688999999999999999999999999999


Q ss_pred             HHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc---ccchhHHHHHHHHHHHHHHHH
Q 010829          157 FQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY--VN---DFSTDWVLTSVTLLTLGSAFT  231 (499)
Q Consensus       157 ~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~--~~---~~~~~~~~~~vl~LvaGt~~l  231 (499)
                      ||||+...|.++|++| |||+||||+|++|||+|+++|++||++++..+...  ..   +.+...+++++++|++|||++
T Consensus        90 ~QLL~~~~p~l~~l~k-~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt~~l  168 (436)
T COG0201          90 MQLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFL  168 (436)
T ss_pred             HHHHHHHHHHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHHHHH
Confidence            9999877899999987 88999999999999999999999999999887421  11   223556788899999999999


Q ss_pred             HHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhc---CchHHHHHHHHHHHHHHHHHHhhccceEeeeeeec
Q 010829          232 TYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD---GNYIGLATIIISFILLVLGIVYVQEAERKIPINYA  308 (499)
Q Consensus       232 ~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~---~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~  308 (499)
                      |||||+|||||+|||+||+|++||++++|+.+.+........   .+....++.++.++++++++||+|++||||||||+
T Consensus       169 mwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~  248 (436)
T COG0201         169 MWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYA  248 (436)
T ss_pred             HHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhheEEEeehhhh
Confidence            999999999999999999999999999999887754433221   12222345666678888999999999999999999


Q ss_pred             ccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch-------hHHHHHHHhcCCCCcchHHHHHHHHH
Q 010829          309 SRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-------AALKKAAVALNPGGSFYLPTNILLIA  381 (499)
Q Consensus       309 ~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~-------~~~~~~~~~l~p~~~~y~~~y~~Lii  381 (499)
                      ||.    .+.++++|+|+|+|||||||+||||+++++|.++++++++       .|...+..++++++++|..+|+++++
T Consensus       249 ~~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii  324 (436)
T COG0201         249 KRQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLII  324 (436)
T ss_pred             hhh----hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHH
Confidence            865    3447899999999999999999999999999999999862       25556777888999999999999999


Q ss_pred             HHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccc
Q 010829          382 FFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGT  461 (499)
Q Consensus       382 ~Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGT  461 (499)
                      +|+|||+++++||||+||||||+|.+|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+.  .+|||
T Consensus       325 ~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~--~~gGT  402 (436)
T COG0201         325 FFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPF--YFGGT  402 (436)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cccCe
Confidence            9999999999999999999999999999999999999999999999999999999999999999998888773  38999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829          462 SVLILVGCATDTARKVQAEIISQKYKNIE  490 (499)
Q Consensus       462 slLI~Vgv~~~~~~qi~~~~~~~~Y~~~~  490 (499)
                      |+||+|++++|+++|+++|+.+++|++++
T Consensus       403 slLI~V~V~l~~~~qi~~~l~~~~Y~~~~  431 (436)
T COG0201         403 SLLIVVGVALDTYEQIEAELLMEKYPGLR  431 (436)
T ss_pred             eeeeehHHHHHHHHHHHHHHHHhhchhHH
Confidence            99999999999999999999999999985

>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 3e-66
3din_C431 Crystal Structure Of The Protein-Translocation Comp 8e-59
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 1e-50
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 6e-50
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 2e-43
3bo0_A442 Ribosome-Secy Complex Length = 442 3e-10
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/405 (36%), Positives = 234/405 (57%), Gaps = 17/405 (4%)
Query: 97  LALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 154
             + RLG +IP+ G+N EA    L   + S+ +  D FSGG +GRL + +LG++P+I+A 
Sbjct: 25  FVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84
Query: 155 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-------- 206
           I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A VQ++G   ++R        
Sbjct: 85  IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGI 144
Query: 207 PYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRT 266
           P V +               G+ F  +I +RI++  +GNG SL+IF  I++  P +  + 
Sbjct: 145 PVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQ- 203
Query: 267 VAEAFQDGNYIGLATIIISFILLV---LGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 323
             E  + G+ IG  T+++   L++   +GIVYVQEAER+IPI Y  R   R     R  Y
Sbjct: 204 FYEKVKTGD-IGPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTY 262
Query: 324 LPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 383
           LP K+N +GV+PIIF+ + L +P TL  F     +K  A    PG  FY    +  I FF
Sbjct: 263 LPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFF 322
Query: 384 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 443
            Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ +++R+   G++FL+++A  P
Sbjct: 323 TYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIP 382
Query: 444 AVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN 488
            +I    ++  +  F GT+ LI+VG A DT R+++  +I +KYK+
Sbjct: 383 ILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKKYKS 425
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 1e-135
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 1e-130
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 1e-130
3din_C431 Preprotein translocase subunit SECY; protein trans 1e-127
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-85
3mp7_A482 Preprotein translocase subunit SECY; protein trans 3e-81
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 7e-52
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 5e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  398 bits (1024), Expect = e-135
 Identities = 154/422 (36%), Positives = 240/422 (56%), Gaps = 14/422 (3%)

Query: 78  FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 134
               F+   L  KF+  L    + RLG +IP+ G+N EA    L      + +  D FSG
Sbjct: 5   LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSG 64

Query: 135 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 194
           G +GRL + +LG++P+I+A I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A
Sbjct: 65  GNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVA 124

Query: 195 IVQAIGQVLYLR--------PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNG 246
            VQ++G   ++R        P V +    ++L +V  L  G+ F  +I +RI++  +GNG
Sbjct: 125 TVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNG 184

Query: 247 TSLLIFTSIISYLPASFGRTVAEAFQ-DGNYIGLATIIISFILLVLGIVYVQEAERKIPI 305
            SL+IF  I++  P +  +   +    D   + L  II   I +++GIVYVQEAER+IPI
Sbjct: 185 ASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244

Query: 306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 365
            Y  R   R     R  YLP K+N +GV+PIIF+ + L +P TL  F     +K  A   
Sbjct: 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMF 304

Query: 366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
            PG  FY    +  I FF Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ ++
Sbjct: 305 QPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERII 364

Query: 426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
           +R+   G++FL+++A  P +I    ++  +  F GT+ LI+VG A DT R+++  +I +K
Sbjct: 365 NRLIFFGALFLSVIALIPILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKK 422

Query: 486 YK 487
           YK
Sbjct: 423 YK 424
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=1.2e-104  Score=838.68  Aligned_cols=411  Identities=32%  Similarity=0.526  Sum_probs=355.9

Q ss_pred             hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhcccccc--chhHHHHHhhcCCCCcccceeecCchHHHHHH
Q 010829           78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ  154 (499)
Q Consensus        78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~--~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAs  154 (499)
                      +.|.|| +++|+|++||++++++||+|+|||+||+|.++.++.+++  +++++++|+|+||+++|+|+|+|||+||||||
T Consensus         5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS   84 (434)
T 2zjs_Y            5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA   84 (434)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred             HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence            457788 799999999999999999999999999999987654322  47889999999999999999999999999999


Q ss_pred             HHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-cc----cc--cchhHHHHHHHHHHH
Q 010829          155 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-YV----ND--FSTDWVLTSVTLLTL  226 (499)
Q Consensus       155 II~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~-~-~~----~~--~~~~~~~~~vl~Lva  226 (499)
                      ||||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++.+++ . ++    .+  .+..+.++++++|++
T Consensus        85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a  163 (434)
T 2zjs_Y           85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA  163 (434)
T ss_dssp             HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence            999999999999999985 999999999999999999999999999998763 1 12    23  444467788999999


Q ss_pred             HHHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHhhccceEeeee
Q 010829          227 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPI  305 (499)
Q Consensus       227 Gt~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~-~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI  305 (499)
                      |++++|||||+|||||+|||+|++|++||++++|+.+.+.++....+ .++..+++.+++++++++++||+|++||||||
T Consensus       164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv  243 (434)
T 2zjs_Y          164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV  243 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence            99999999999999999999999999999999999988876533221 14445455566678888999999999999999


Q ss_pred             eecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhc-hhHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 010829          306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN  384 (499)
Q Consensus       306 ~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~-~~~~~~~~~~l~p~~~~y~~~y~~Lii~Fs  384 (499)
                      ||+||.+||+++.++++|+|+|+|++||||+|||+|++++|+++++++. ++|.+.+.++++|++++|.++|++++++||
T Consensus       244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs  323 (434)
T 2zjs_Y          244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT  323 (434)
T ss_dssp             EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            9999988888888899999999999999999999999999999999764 457666778899999999999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhH
Q 010829          385 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL  464 (499)
Q Consensus       385 ~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslL  464 (499)
                      |||+++++||||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+.+ ++||||+|
T Consensus       324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~-~~gGTslL  402 (434)
T 2zjs_Y          324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSI-AFSGIGLL  402 (434)
T ss_dssp             HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCG-GGSSHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccc-cccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998655344222 38999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCee
Q 010829          465 ILVGCATDTARKVQAEIISQKYKNIE  490 (499)
Q Consensus       465 I~Vgv~~~~~~qi~~~~~~~~Y~~~~  490 (499)
                      |+|||++|++||+|+++.+++|+++.
T Consensus       403 I~VgV~ldt~~qi~s~~~~~~Y~~~~  428 (434)
T 2zjs_Y          403 IVVGVALDTLRQVESQLMLRSYEGFL  428 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999983
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 499
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 1e-58
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  197 bits (503), Expect = 1e-58
 Identities = 67/431 (15%), Positives = 133/431 (30%), Gaps = 62/431 (14%)

Query: 83  KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGI 142
           +     K       L L  +   I +     +         ++     + +        +
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-------PAIFEFWQTITASR--IGTL 69

Query: 143 CSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV 202
            +LGI P + A I+ QLL      +  +        R       +  S+    V+A+  V
Sbjct: 70  ITLGIGPIVTAGIIMQLLVG--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFV 126

Query: 203 LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 262
                 +      +++  +  +  GS    Y+ E +S   +G+G  L I   +   +   
Sbjct: 127 GAGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 184

Query: 263 -------FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 315
                    + +    Q    I     II  I++ L +VY +    +IP+ +        
Sbjct: 185 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---- 240

Query: 316 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR------------FTGIAALKKAAV 363
                    P K      +P+I + +  A                   + G  A+   A 
Sbjct: 241 ---GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 364 ALNPGGSFYLPTNILL-------------IAFFNYYYTFLQLDPDDVSEQLKRQGASIPL 410
            L+         +  +             + F  ++     LDP  +++++   G +I  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 357

Query: 411 VRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 469
            R  +      LK  +  ++V+ S F+  LA     I             GT VL+ V  
Sbjct: 358 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGAL--------GGGTGVLLTVSI 409

Query: 470 ATDTARKVQAE 480
                 ++  E
Sbjct: 410 VYRMYEQLLRE 420

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.9e-87  Score=703.42  Aligned_cols=369  Identities=19%  Similarity=0.190  Sum_probs=296.7

Q ss_pred             cCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 010829           83 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ  162 (499)
Q Consensus        83 k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~  162 (499)
                      |.++|||++||++++++||+|+|||+||+|.++..       .+.+++.++|+  +++|+|+|||+||||||||||||+.
T Consensus        19 ~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~~-------~~~~~~~~~a~--~~~Sif~LGI~PyItASIImQLL~~   89 (422)
T d1rh5a_          19 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA-------IFEFWQTITAS--RIGTLITLGIGPIVTAGIIMQLLVG   89 (422)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS-------CCTTHHHHHTC--CTTBTTTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCccc-------HHHHHHHHhcc--ccccHHHhChHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999977532       22355666766  6889999999999999999999985


Q ss_pred             hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010829          163 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLK  242 (499)
Q Consensus       163 ~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~~G  242 (499)
                        |+++++++ |||+||+|+|++|||+|+++|++||++++.....  .+.+....++++++|++|++++|||||+|||||
T Consensus        90 --~~l~~~~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~--~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~G  164 (422)
T d1rh5a_          90 --SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF--GILTPLLAFLVIIQIAFGSIILIYLDEIVSKYG  164 (422)
T ss_dssp             --HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --hhHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence              89999986 9999999999999999999999999998876532  344555667788999999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhhhHHHHH-------HHHHHhhc-CchHHHHHHHHHHHHHHHHHHhhccceEeeeeeeccccccc
Q 010829          243 LGNGTSLLIFTSIISYLPASFGR-------TVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR  314 (499)
Q Consensus       243 iGnG~SLiI~~~Ii~~lp~~i~~-------~~~~~~~~-~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~  314 (499)
                      +|||+|++|++||++++|+....       ..+..... .++.. +..++.+++++++++|+|++|||||++|+|+.   
T Consensus       165 iGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~---  240 (422)
T d1rh5a_         165 IGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---  240 (422)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSSST---
T ss_pred             cccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccc---
Confidence            99999999999999999764422       11111111 22333 44445566778889999999999999998643   


Q ss_pred             CCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch------------hHHHHHHHhcCCC--------C----c
Q 010829          315 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI------------AALKKAAVALNPG--------G----S  370 (499)
Q Consensus       315 ~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~------------~~~~~~~~~l~p~--------~----~  370 (499)
                          +.++|+|+|+|++|+||+|||++++++|+++++++..            .+...+.+++++.        +    .
T Consensus       241 ----~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~  316 (422)
T d1rh5a_         241 ----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAI  316 (422)
T ss_dssp             ----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred             ----ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHHHhCCcchhhccccCccchH
Confidence                4578999999999999999999999999999887521            1222344555431        1    2


Q ss_pred             chHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChhHH-HHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 010829          371 FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKSTA-AFLKTVLSRISVLGSVFLAILAAGPAVIEQ  448 (499)
Q Consensus       371 ~y~~~y~~Lii~Fs~f~s~i-~~np~diAe~Lkk~G~~IpGiRpG~~T~-~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~  448 (499)
                      +|.++|++++++|+|||+.+ ++||||+||||||||++|||+||||+|. +||+|+++|+|++||+|++++|++|++++ 
T Consensus       317 ~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~-  395 (422)
T d1rh5a_         317 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG-  395 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            57788889999999999988 6999999999999999999999999995 56999999999999999999999999975 


Q ss_pred             hcCcccccccccchhHHHHHHHHHHHHHHHHHH
Q 010829          449 TTHLTAFRGFAGTSVLILVGCATDTARKVQAEI  481 (499)
Q Consensus       449 ~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~  481 (499)
                           .+  +||||+||+|||++|++||+++|+
T Consensus       396 -----~~--~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         396 -----AL--GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             -----CT--TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -----Hh--cchHHHHHHHHHHHHHHHHHHHhh
Confidence                 33  689999999999999999999885