Citrus Sinensis ID: 010949

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MSSDERRPLRSSNQEDLESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFSDRRITFKDPPLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
cccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccEHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccEEEEccc
mssderrplrssnqedlesapdspsnrtstpsaaggIKDLFKQLDRrfsdrritfkdpplshsrsssfdhhnyvdardsltesappEWALLLIGCLLGLASGLCVAFFNKGVHIIhewawagtpneGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIkqsssldrqgfdlvagVFPTIKAIQAAVTlgtgcslgpegpsvdigkscANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLrplraensppfTTAMIILASVISSTVSTVLLgtqsaftvpsydlksaaelPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKekfglppvvcpalgglgagiialrypgilywgFTNVEEILhtgktasapgiWLLTQLAAAKVVATALCkgsglvgglyapslMIGAAVGAVFGGSAAEIINsaipgnvavaePQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
mssderrplrssnqedlesapdspsnrtstpsaaggikDLFKQLDRRFsdrritfkdpplshsrsssfdhHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
MSSDERRPLRSSNQEDLESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFSDRRITFKDPPLSHSRSSSFDHHNYVDARDSLTESAPPEWallligcllglasglcVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIalvaagaasgiasgfnaaVAGCFFAIETVLRPLRAENSPPFTTAMiilasvisstvstvllgtqsAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPalgglgagiialRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIgaavgavfggsaaEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
*************************************************************************************PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILL***
*****************************************************************************DSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQ**SLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
********************************AAGGIKDLFKQLDRRFSDRRITFKD**********FDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
**********************************GGIKDLFKQLDRRFSDRRITFKDPPLSHSRS***DHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
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MSSDERRPLRSSNQEDLESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFSDRRITFKDPPLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q8RXR2 781 Chloride channel protein yes no 0.991 0.631 0.770 0.0
Q8GX93 710 Chloride channel protein no no 0.806 0.564 0.473 2e-96
Q8XTT4429 Putative chloride channel yes no 0.764 0.885 0.296 2e-29
B5Y1L4472 H(+)/Cl(-) exchange trans yes no 0.786 0.828 0.274 3e-25
B5BL83473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 7e-24
Q5PD50473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 7e-24
A8ALD3473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 1e-23
B4TK31473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 4e-23
B5FJ02473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 4e-23
B5F8R6473 H(+)/Cl(-) exchange trans yes no 0.583 0.613 0.324 4e-23
>sp|Q8RXR2|CLCF_ARATH Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2 Back     alignment and function desciption
 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/531 (77%), Positives = 450/531 (84%), Gaps = 38/531 (7%)

Query: 3   SDERRPLRSSNQEDL-----ESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFS--DRRITF 55
           +++R  LRS++ +++     E   D  S   +  S AGG++DLFK +DRRFS   RR++F
Sbjct: 10  NEDRHLLRSTDGDEVGIGGGEGDLDVESQSPAIRSGAGGVRDLFKHIDRRFSLSGRRLSF 69

Query: 56  KDPPLSHSRSSSFDHH---------------------NYVDARDS--------LTESAPP 86
           K   + + R     H+                     + VD R+         L +SAPP
Sbjct: 70  K--RMENIRVDRERHNPSSSSAFSAAGEEDGGGISNLHSVDDRNDEYGFDEEVLGDSAPP 127

Query: 87  EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLI 146
           EWALLLIGCL+G+A+G+CVA FNKGVH+IHEWAWAGTPNEGAAWLRLQRLADTWHRILLI
Sbjct: 128 EWALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLI 187

Query: 147 PVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPE 206
           PVTGGVIVGMMHGLLEIL+QI+QS+S  RQG D +AG++P IKAIQAAVTLGTGCSLGPE
Sbjct: 188 PVTGGVIVGMMHGLLEILDQIRQSNSSQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPE 247

Query: 207 GPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLR 266
           GPSVDIGKSCANGF+LMMENNRER+IAL AAGAASGIASGFNAAVAGCFFAIETVLRPLR
Sbjct: 248 GPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFFAIETVLRPLR 307

Query: 267 AENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVS 326
           AENSPPFTTAMIILASVISSTVS  LLGTQSAFTVPSYDLKSAAELPLYLILGMLCG VS
Sbjct: 308 AENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAAELPLYLILGMLCGAVS 367

Query: 327 VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHT 386
           VVF+RLV WFTKSFDFIK+KFGLP +VCPALGGLGAGIIAL+YPGILYWGFTNVEEILHT
Sbjct: 368 VVFSRLVTWFTKSFDFIKDKFGLPAIVCPALGGLGAGIIALKYPGILYWGFTNVEEILHT 427

Query: 387 GKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINS 446
           GK+ASAPGIWLL QLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN 
Sbjct: 428 GKSASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINR 487

Query: 447 AIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
           AIPGN AVA+PQAYALVGMAATLAS+CSVPLTSVLLLFELT+DYRILLPLM
Sbjct: 488 AIPGNAAVAQPQAYALVGMAATLASMCSVPLTSVLLLFELTKDYRILLPLM 538
Voltage-gated chloride channel.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GX93|CLCE_ARATH Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2 Back     alignment and function description
>sp|Q8XTT4|CLCL_RALSO Putative chloride channel protein ClcB-like OS=Ralstonia solanacearum (strain GMI1000) GN=RSp0020 PE=3 SV=2 Back     alignment and function description
>sp|B5Y1L4|CLCA_KLEP3 H(+)/Cl(-) exchange transporter ClcA OS=Klebsiella pneumoniae (strain 342) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|B5BL83|CLCA_SALPK H(+)/Cl(-) exchange transporter ClcA OS=Salmonella paratyphi A (strain AKU_12601) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|Q5PD50|CLCA_SALPA H(+)/Cl(-) exchange transporter ClcA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|A8ALD3|CLCA_CITK8 H(+)/Cl(-) exchange transporter ClcA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|B4TK31|CLCA_SALHS H(+)/Cl(-) exchange transporter ClcA OS=Salmonella heidelberg (strain SL476) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|B5FJ02|CLCA_SALDC H(+)/Cl(-) exchange transporter ClcA OS=Salmonella dublin (strain CT_02021853) GN=clcA PE=3 SV=1 Back     alignment and function description
>sp|B5F8R6|CLCA_SALA4 H(+)/Cl(-) exchange transporter ClcA OS=Salmonella agona (strain SL483) GN=clcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
13620170 780 hypothetical protein [Capsella rubella] 0.991 0.632 0.779 0.0
18405453 781 chloride channel protein CLC-f [Arabidop 0.991 0.631 0.770 0.0
8778501 784 F20N2.5 [Arabidopsis thaliana] 0.991 0.628 0.770 0.0
297853268 781 CLC-F [Arabidopsis lyrata subsp. lyrata] 0.933 0.594 0.810 0.0
147835092 747 hypothetical protein VITISV_004413 [Viti 0.931 0.619 0.860 0.0
296090045 747 unnamed protein product [Vitis vinifera] 0.931 0.619 0.860 0.0
255576623 776 voltage-gated clc-type chloride channel, 0.923 0.591 0.852 0.0
13620228 750 hypothetical protein [Solanum lycopersic 0.975 0.646 0.790 0.0
350539551 750 uncharacterized protein LOC606305 [Solan 0.975 0.646 0.788 0.0
449461120 795 PREDICTED: chloride channel protein CLC- 0.995 0.622 0.755 0.0
>gi|13620170|emb|CAC36391.1| hypothetical protein [Capsella rubella] Back     alignment and taxonomy information
 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/530 (77%), Positives = 447/530 (84%), Gaps = 37/530 (6%)

Query: 3   SDERRPLRSSNQED----LESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFS--DRRITFK 56
           +++R  LRS+  ED     +   D  S   +  S AGG++DLFK LDRRFS   RR++FK
Sbjct: 10  NEDRHLLRSTGDEDSIGREDGDIDVESQSPAVRSGAGGVRDLFKHLDRRFSLSGRRLSFK 69

Query: 57  DPPLSHSRSSSFDH----------------------HNYVDARDS-------LTESAPPE 87
              + ++R     H                      HN  D  D        L +SAPPE
Sbjct: 70  --RMENNRVDRERHNPSSSSSAFSAAEEDGGGISNLHNVDDRIDEYGFDEEVLGDSAPPE 127

Query: 88  WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 147
           WALLLIGCL+G+A+G+CVA FNKGVH+IHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP
Sbjct: 128 WALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 187

Query: 148 VTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEG 207
           VTGGVIVGMMHGLLEIL+QI+QS+S  RQG D +AG++P IKAIQAAVTLGTGCSLGPEG
Sbjct: 188 VTGGVIVGMMHGLLEILDQIRQSTSSQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPEG 247

Query: 208 PSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRA 267
           PSVDIGKSCANGF+LMMENNRER+IAL AAGAASGIASGFNAAVAGCFFAIETVLRPLRA
Sbjct: 248 PSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFFAIETVLRPLRA 307

Query: 268 ENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSV 327
           ENSPPFTTAMIILASVISSTVS  LLGTQSAFTVPSYDLKSAAELPLYLILGMLCG VSV
Sbjct: 308 ENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAAELPLYLILGMLCGAVSV 367

Query: 328 VFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTG 387
           VF+RLV WFTKSFDFIKEKFGLP +VCPALGGLGAGIIAL+YPGILYWGFTNVEEILHTG
Sbjct: 368 VFSRLVTWFTKSFDFIKEKFGLPAIVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTG 427

Query: 388 KTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSA 447
           K+ASAPGIWLL QLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN A
Sbjct: 428 KSASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINRA 487

Query: 448 IPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
           IPGN AVA+PQAYALVGMAATLAS+CSVPLTSVLLLFELT+DYRILLPLM
Sbjct: 488 IPGNAAVAQPQAYALVGMAATLASMCSVPLTSVLLLFELTKDYRILLPLM 537

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18405453|ref|NP_564698.1| chloride channel protein CLC-f [Arabidopsis thaliana] gi|41688504|sp|Q8RXR2.2|CLCF_ARATH RecName: Full=Chloride channel protein CLC-f; Short=AtCLC-f; AltName: Full=CBS domain-containing protein CBSCLC1 gi|14039802|gb|AAK53391.1|AF366368_1 CLC-f chloride channel protein [Arabidopsis thaliana] gi|13619402|emb|CAC36386.1| hypothetical protein [Arabidopsis thaliana] gi|332195154|gb|AEE33275.1| chloride channel protein CLC-f [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8778501|gb|AAF79509.1|AC002328_17 F20N2.5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297853268|ref|XP_002894515.1| CLC-F [Arabidopsis lyrata subsp. lyrata] gi|297340357|gb|EFH70774.1| CLC-F [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147835092|emb|CAN65681.1| hypothetical protein VITISV_004413 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090045|emb|CBI39864.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576623|ref|XP_002529201.1| voltage-gated clc-type chloride channel, putative [Ricinus communis] gi|223531319|gb|EEF33157.1| voltage-gated clc-type chloride channel, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|13620228|emb|CAC36403.1| hypothetical protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|350539551|ref|NP_001234185.1| uncharacterized protein LOC606305 [Solanum lycopersicum] gi|13620222|emb|CAC36398.1| hypothetical protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449461120|ref|XP_004148291.1| PREDICTED: chloride channel protein CLC-f-like [Cucumis sativus] gi|449506605|ref|XP_004162795.1| PREDICTED: chloride channel protein CLC-f-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2020542 781 CLC-F "chloride channel F" [Ar 0.873 0.555 0.713 6.9e-171
TIGR_CMR|SPO_1208 581 SPO_1208 "voltage-gated chlori 0.742 0.635 0.239 1.6e-19
TIGR_CMR|GSU_2363 614 GSU_2363 "chloride channel fam 0.370 0.299 0.348 1.2e-18
UNIPROTKB|Q9KM62468 clcA "H(+)/Cl(-) exchange tran 0.593 0.630 0.260 3e-14
TIGR_CMR|VC_A0526468 VC_A0526 "conserved hypothetic 0.593 0.630 0.260 3e-14
UNIPROTKB|P37019473 clcA "ClcA" [Escherichia coli 0.585 0.615 0.232 2.7e-09
RGD|708381 747 Clcn4 "chloride channel, volta 0.205 0.136 0.274 8.3e-07
UNIPROTKB|Q56A19 754 Clcn4 "Putative chloride chann 0.205 0.135 0.274 8.6e-07
ZFIN|ZDB-GENE-061013-353 768 zgc:153764 "zgc:153764" [Danio 0.205 0.132 0.300 9.2e-07
MGI|MGI:104571 747 Clcn4-2 "chloride channel 4-2" 0.205 0.136 0.274 1.7e-06
TAIR|locus:2020542 CLC-F "chloride channel F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1586 (563.4 bits), Expect = 6.9e-171, Sum P(2) = 6.9e-171
 Identities = 311/436 (71%), Positives = 333/436 (76%)

Query:    62 HSRSSSFDHHNYVDARDSLTESAPPEWXXXXXXXXXXXXXXXXVAFFNKGVHIIHEWAWA 121
             HS     D + + +  + L +SAPPEW                VA FNKGVH+IHEWAWA
Sbjct:   105 HSVDDRNDEYGFDE--EVLGDSAPPEWALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWA 162

Query:   122 GTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLV 181
             GTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL+QI+QS+S  RQG D +
Sbjct:   163 GTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILDQIRQSNSSQRQGLDFL 222

Query:   182 AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIXXXXXXXXX 241
             AG++P IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGF+LMMENNRER+I         
Sbjct:   223 AGIYPVIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAAS 282

Query:   242 XXXXXXXXXVAGCFFAIETVLRPLRAENSPPFTTAMXXXXXXXXXXXXXXXXXXXXAFTV 301
                      VAGCFFAIETVLRPLRAENSPPFTTAM                    AFTV
Sbjct:   283 GIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNALLGTQSAFTV 342

Query:   302 PSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPXXXXXX 361
             PSYDLKSAAELPLYLILGMLCG VSVVF+RLV WFTKSFDFIK+KFGLP +VCP      
Sbjct:   343 PSYDLKSAAELPLYLILGMLCGAVSVVFSRLVTWFTKSFDFIKDKFGLPAIVCPALGGLG 402

Query:   362 XXXXXXRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGL 421
                   +YPGILYWGFTNVEEILHTGK+ASAPGIWLL QLAAAKVVATALCKGSGLVGGL
Sbjct:   403 AGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAKVVATALCKGSGLVGGL 462

Query:   422 YAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVL 481
             YAPSLMI             EIIN AIPGN AVA+PQAYALVGMAATLAS+CSVPLTSVL
Sbjct:   463 YAPSLMIGAAVGAVFGGSAAEIINRAIPGNAAVAQPQAYALVGMAATLASMCSVPLTSVL 522

Query:   482 LLFELTRDYRILLPLM 497
             LLFELT+DYRILLPLM
Sbjct:   523 LLFELTKDYRILLPLM 538
GO:0005216 "ion channel activity" evidence=IEA
GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS
GO:0006821 "chloride transport" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TIGR_CMR|SPO_1208 SPO_1208 "voltage-gated chloride channel family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2363 GSU_2363 "chloride channel family protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KM62 clcA "H(+)/Cl(-) exchange transporter ClcA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0526 VC_A0526 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P37019 clcA "ClcA" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
RGD|708381 Clcn4 "chloride channel, voltage-sensitive 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q56A19 Clcn4 "Putative chloride channel 4-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-353 zgc:153764 "zgc:153764" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:104571 Clcn4-2 "chloride channel 4-2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXR2CLCF_ARATHNo assigned EC number0.77020.99190.6312yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CLC-F
CLC-F (CHLORIDE CHANNEL F); ion channel/ voltage-gated chloride channel; Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen. ; Voltage-gated chloride channel (781 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
CLC-D
CLC-D (CHLORIDE CHANNEL D); anion channel/ voltage-gated chloride channel; member of Anion chan [...] (792 aa)
  •  •• 0.980
CLC-C
CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel; member of Anion chan [...] (779 aa)
     •• 0.896
AT1G55630
pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (477 aa)
      • 0.885
AT1G55590
F-box family protein; F-box family protein; INVOLVED IN- biological_process unknown; LOCATED IN [...] (607 aa)
      • 0.885
CLC-B
CLC-B (CHLORIDE CHANNEL B); anion channel/ voltage-gated chloride channel; member of Anion chan [...] (780 aa)
     •• 0.842
AT5G33280
chloride channel-like (CLC) protein, putative; chloride channel-like (CLC) protein, putative; F [...] (763 aa)
  •  •  0.766
ATCLC-A
ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated c [...] (775 aa)
     •••0.736
FUT11
FUT11 (FUCOSYLTRANSFERASE 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ [...] (501 aa)
      • 0.679
CLC-E
CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel; Enclodes a choride cha [...] (710 aa)
  •  •••0.612
VHA-A1
VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase; Vacuolar proton ATPase subunit VHA-a isoform 1. Lo [...] (817 aa)
      • 0.573

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
cd00400383 cd00400, Voltage_gated_ClC, CLC voltage-gated chlo 1e-95
pfam00654345 pfam00654, Voltage_CLC, Voltage gated chloride cha 6e-70
COG0038443 COG0038, EriC, Chloride channel protein EriC [Inor 8e-55
cd01031402 cd01031, EriC, ClC chloride channel EriC 4e-53
PRK01862 574 PRK01862, PRK01862, putative voltage-gated ClC-typ 4e-52
PRK05277438 PRK05277, PRK05277, chloride channel protein; Prov 3e-42
cd01033388 cd01033, ClC_like, Putative ClC chloride channel 3e-31
cd01034390 cd01034, EriC_like, ClC chloride channel family 3e-28
PRK01610418 PRK01610, PRK01610, putative voltage-gated ClC-typ 5e-24
cd03684445 cd03684, ClC_3_like, ClC-3-like chloride channel p 2e-23
cd03683426 cd03683, ClC_1_like, ClC-1-like chloride channel p 2e-22
cd01036416 cd01036, ClC_euk, Chloride channel, ClC 8e-21
cd03685466 cd03685, ClC_6_like, ClC-6-like chloride channel p 1e-13
cd03682378 cd03682, ClC_sycA_like, ClC sycA-like chloride cha 7e-12
pfam00654 345 pfam00654, Voltage_CLC, Voltage gated chloride cha 2e-05
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel Back     alignment and domain information 
 Score =  294 bits (754), Expect = 1e-95
 Identities = 160/402 (39%), Positives = 223/402 (55%), Gaps = 28/402 (6%)

Query: 98  GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM 157
           G+ SGL    F   + ++    + G P E AA             ILL+PV GG++VG++
Sbjct: 1   GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLS------PLYILLVPVIGGLLVGLL 54

Query: 158 HGLL--EILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKS 215
             LL     + I +       G   +      +K + +A+TLG+G S+G EGP V IG +
Sbjct: 55  VRLLGPARGHGIPEVIEAIALGGGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAA 114

Query: 216 CANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTT 275
             +     +  +R  +  LVA GAA+GIA+ FNA +AG  FAIE +L           + 
Sbjct: 115 IGSWLGRRLRLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVA-----SL 169

Query: 276 AMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAW 335
             ++LASV ++ VS +L G + AF VP YD  S  ELPLYL+LG+L G+V V+F RL+  
Sbjct: 170 IPVLLASVAAALVSRLLFGAEPAFGVPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYK 229

Query: 336 FTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 395
             + F     +  +PP + PALGGL  G++ L  P +L  G+  +   L     A    +
Sbjct: 230 IERLF----RRLPIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAILLAL-----AGELSL 280

Query: 396 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVA 455
            LL  L   K++ATAL  GSG  GG++APSL IGAA+GA FG     ++ +  PG   VA
Sbjct: 281 LLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFG----LLLPALFPG--LVA 334

Query: 456 EPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
            P AYALVGMAA LA+V   PLT++LL+ ELT DY +LLPLM
Sbjct: 335 SPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLM 376

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel Back     alignment and domain information
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC Back     alignment and domain information
>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional Back     alignment and domain information
>gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel Back     alignment and domain information
>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family Back     alignment and domain information
>gnl|CDD|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC Back     alignment and domain information
>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins Back     alignment and domain information
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
PRK01610418 putative voltage-gated ClC-type chloride channel C 100.0
PRK01862 574 putative voltage-gated ClC-type chloride channel C 100.0
cd01033388 ClC_like Putative ClC chloride channel. Clc protei 100.0
COG0038443 EriC Chloride channel protein EriC [Inorganic ion 100.0
cd01031402 EriC ClC chloride channel EriC. This domain is fou 100.0
cd03684445 ClC_3_like ClC-3-like chloride channel proteins. T 100.0
PRK05277438 chloride channel protein; Provisional 100.0
cd00400383 Voltage_gated_ClC CLC voltage-gated chloride chann 100.0
PF00654355 Voltage_CLC: Voltage gated chloride channel Mutati 100.0
cd01034390 EriC_like ClC chloride channel family. These prote 100.0
PRK03655414 putative ion channel protein; Provisional 100.0
cd03682378 ClC_sycA_like ClC sycA-like chloride channel prote 100.0
cd01036416 ClC_euk Chloride channel, ClC. These domains are f 100.0
cd03685466 ClC_6_like ClC-6-like chloride channel proteins. T 100.0
cd03683426 ClC_1_like ClC-1-like chloride channel proteins. T 100.0
KOG0475 696 consensus Cl- channel CLC-3 and related proteins ( 100.0
KOG0474 762 consensus Cl- channel CLC-7 and related proteins ( 100.0
KOG0476 931 consensus Cl- channel CLC-2 and related proteins ( 100.0
cd01034390 EriC_like ClC chloride channel family. These prote 99.73
cd01033388 ClC_like Putative ClC chloride channel. Clc protei 99.68
PRK05277438 chloride channel protein; Provisional 99.65
PRK01610418 putative voltage-gated ClC-type chloride channel C 99.63
PRK01862574 putative voltage-gated ClC-type chloride channel C 99.61
cd03682378 ClC_sycA_like ClC sycA-like chloride channel prote 99.6
cd00400383 Voltage_gated_ClC CLC voltage-gated chloride chann 99.58
cd01031402 EriC ClC chloride channel EriC. This domain is fou 99.52
COG0038443 EriC Chloride channel protein EriC [Inorganic ion 99.36
cd01036416 ClC_euk Chloride channel, ClC. These domains are f 99.34
cd03685466 ClC_6_like ClC-6-like chloride channel proteins. T 99.32
PF00654355 Voltage_CLC: Voltage gated chloride channel Mutati 99.31
cd03684445 ClC_3_like ClC-3-like chloride channel proteins. T 99.27
PRK03655414 putative ion channel protein; Provisional 99.16
cd03683426 ClC_1_like ClC-1-like chloride channel proteins. T 99.15
KOG0475696 consensus Cl- channel CLC-3 and related proteins ( 97.77
KOG0476 931 consensus Cl- channel CLC-2 and related proteins ( 96.96
KOG0474 762 consensus Cl- channel CLC-7 and related proteins ( 96.8
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.6e-59  Score=490.60  Aligned_cols=377  Identities=25%  Similarity=0.441  Sum_probs=308.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH--------
Q 010949           88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG--------  159 (497)
Q Consensus        88 ~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g--------  159 (497)
                      .+++++++++|+++|+.+.+|++.+++++++.+....++   +....+...+| +++++|++||+++|+++.        
T Consensus         2 ~~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~   77 (418)
T PRK01610          2 FRRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGS---LVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQ   77 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---hhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccc
Confidence            356678899999999999999999999987654322111   11001112244 567899999999888632        


Q ss_pred             ----HHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 010949          160 ----LLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV  235 (497)
Q Consensus       160 ----~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~  235 (497)
                          .++++++++.++     .++   .+..+.|++++++++++|+|+|||||++|+|++++++++|+++ ++++||.++
T Consensus        78 ~~~g~~~vi~av~~~g-----~~~---~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-~~~~~r~li  148 (418)
T PRK01610         78 RPHAPTDYMEALQTDG-----QFD---YAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-PRQEWKLWI  148 (418)
T ss_pred             cCCCcHHHHHHHHcCC-----CCC---ccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-ChHHHHHHH
Confidence                234455554311     123   3345789999999999999999999999999999999999999 466677899


Q ss_pred             HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCc-cccccccCCCCchhhHHH
Q 010949          236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQ-SAFTVPSYDLKSAAELPL  314 (497)
Q Consensus       236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~-~~f~~~~~~~~~~~~l~~  314 (497)
                      +||++||++++||||++|++|++|++.++++.+     .+.|+++++++++.+++.+.|.+ +.|.++....+++.++++
T Consensus       149 ~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~-----~~~p~~ias~~a~~v~~~~~g~~~~~~~i~~~~~~~~~~l~~  223 (418)
T PRK01610        149 ACGAAAGMASAYHAPLAGSLFIAEILFGTLMLA-----SLGPVVISAVVALLTTNLLNGSDALLYNVQLSVTVQARDYAL  223 (418)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHcCCCCCeeecCCcCCCCHHHHHH
Confidence            999999999999999999999999998776544     35788999999999999988754 678888666667889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCch
Q 010949          315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPG  394 (497)
Q Consensus       315 ~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~  394 (497)
                      ++++|++||++|.+|++..++.++++++.    +.++++++.++|+++|++.+++|+++++|++.++++++.+     +.
T Consensus       224 ~i~lGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~lggli~g~l~~~~p~~~G~G~~~i~~~~~~~-----~~  294 (418)
T PRK01610        224 IISTGLLAGLCGPLLLTLMNASHRGFVSL----KLAPPWQLALGGLIVGLLSLFTPAVWGNGYSVVQSFLTAP-----PL  294 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchhHHHHHHHHHHHHHHHHhhHHhCCcHHHHHHHHcCC-----hh
Confidence            99999999999999999999988777543    2455679999999999999999999999999988877543     33


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhh
Q 010949          395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS  474 (497)
Q Consensus       395 ~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r  474 (497)
                      ...++.+.+.|+++|.+|+|+|++||+|+|++++|+++|..++.++..    .+|+.  ...+..|+++||+|++++++|
T Consensus       295 ~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~----~~~~~--~~~~~~~a~vGmaA~laa~~~  368 (418)
T PRK01610        295 LMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGL----WLPDG--EEITLLLGLTGMATLLAATTH  368 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCCc--ccchHHHHHHHHHHHHHHHHc
Confidence            455666778999999999999999999999999999999999987653    34542  134788999999999999999


Q ss_pred             hHHHHHHHHHHHhcCccchhcCC
Q 010949          475 VPLTSVLLLFELTRDYRILLPLM  497 (497)
Q Consensus       475 ~Plt~vvl~~Eltg~~~~llPlm  497 (497)
                      +|+|++++++|+||++++++|+|
T Consensus       369 aPltaivl~~Eltg~~~~~~p~~  391 (418)
T PRK01610        369 APIMSTLMICEMTGEYQLLPGLL  391 (418)
T ss_pred             cHHHHHHHHHHHhCCHhHHHHHH
Confidence            99999999999999999999875

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>cd01033 ClC_like Putative ClC chloride channel Back     alignment and domain information
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01031 EriC ClC chloride channel EriC Back     alignment and domain information
>cd03684 ClC_3_like ClC-3-like chloride channel proteins Back     alignment and domain information
>PRK05277 chloride channel protein; Provisional Back     alignment and domain information
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel Back     alignment and domain information
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease Back     alignment and domain information
>cd01034 EriC_like ClC chloride channel family Back     alignment and domain information
>PRK03655 putative ion channel protein; Provisional Back     alignment and domain information
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins Back     alignment and domain information
>cd01036 ClC_euk Chloride channel, ClC Back     alignment and domain information
>cd03685 ClC_6_like ClC-6-like chloride channel proteins Back     alignment and domain information
>cd03683 ClC_1_like ClC-1-like chloride channel proteins Back     alignment and domain information
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01034 EriC_like ClC chloride channel family Back     alignment and domain information
>cd01033 ClC_like Putative ClC chloride channel Back     alignment and domain information
>PRK05277 chloride channel protein; Provisional Back     alignment and domain information
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional Back     alignment and domain information
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins Back     alignment and domain information
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel Back     alignment and domain information
>cd01031 EriC ClC chloride channel EriC Back     alignment and domain information
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01036 ClC_euk Chloride channel, ClC Back     alignment and domain information
>cd03685 ClC_6_like ClC-6-like chloride channel proteins Back     alignment and domain information
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease Back     alignment and domain information
>cd03684 ClC_3_like ClC-3-like chloride channel proteins Back     alignment and domain information
>PRK03655 putative ion channel protein; Provisional Back     alignment and domain information
>cd03683 ClC_1_like ClC-1-like chloride channel proteins Back     alignment and domain information
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1kpl_A473 Crystal Structure Of The Clc Chloride Channel From 3e-09
3nd0_A466 X-Ray Crystal Structure Of A Slow Cyanobacterial Cl 1e-08
2htl_A473 Structure Of The Escherichia Coli Clc Chloride Chan 7e-07
2ht2_A473 Structure Of The Escherichia Coli Clc Chloride Chan 7e-07
3ejy_A473 Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTE 8e-07
1ots_A465 Structure Of The Escherichia Coli Clc Chloride Chan 8e-07
1kpk_A473 Crystal Structure Of The Clc Chloride Channel From 8e-07
2exy_A473 Crystal Structure Of The E148q Mutant Of Ecclc, Fab 8e-07
3ejz_A473 Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, C 8e-07
2fec_A465 Structure Of The E203q Mutant Of The Cl-H+ EXCHANGE 8e-07
1otu_A465 Structure Of The Escherichia Coli Clc Chloride Chan 8e-07
2htk_A473 Structure Of The Escherichia Coli Clc Chloride Chan 8e-07
4ftp_A465 Structure Of The E202y Mutant Of The Cl-H+ ANTIPORT 8e-07
2ht4_A473 Structure Of The Escherichia Coli Clc Chloride Chan 8e-07
2ht3_A473 Structure Of The Escherichia Coli Clc Chloride Chan 8e-07
4ene_A446 Structure Of The N- And C-Terminal Trimmed Clc-Ec1 8e-07
1ott_A465 Structure Of The Escherichia Coli Clc Chloride Chan 9e-07
2ez0_A473 Crystal Structure Of The S107aE148QY445A MUTANT OF 9e-07
3det_A473 Structure Of The E418a, Y445a Doubly Ungated Mutant 9e-07
2hlf_A444 Structure Of The Escherichis Coli Clc Chloride Chan 9e-07
2r9h_A444 Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Com 9e-07
3nmo_A465 Crystal Structure Of An Engineered Monomeric Clc-Ec 2e-06
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S. Typhimurium Length = 473 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 119/322 (36%), Gaps = 37/322 (11%)
Query: 188 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANG-FSLMMENNRERKIXXXXXXXXXXXXXX 246
           +K I    TLG G  LG EGP+V IG +       +    + E +               
Sbjct: 130 VKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSAA 189
Query: 247 XXXXVAGCFFAIETVLRPLRAENSPPFTTAMXXXXXXXXXXXXXXXXXXXXAFTVPSYDL 306
               +AG  F IE        E  P F   +                        P  ++
Sbjct: 190 FNAPLAGILFIIE--------EMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEV 241
Query: 307 KSAAELP-----LYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPXXXXXX 361
              ++ P     LYLILG++ GVV  VF  LV      F           V+        
Sbjct: 242 GKLSDAPVNTLWLYLILGIIFGVVGPVFNSLVLRTQDMFQRFHGGEIKKWVLMGGAIGGL 301
Query: 362 XXXXXXRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGL 421
                   P     GF N+  I   G  +    + LL  +   +VV T LC  SG  GG+
Sbjct: 302 CGILGLIEPAAAGGGF-NLIPIAAAGNFS----VGLLLFIFITRVVTTLLCFSSGAPGGI 356
Query: 422 YAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQ------AYALVGMAATLASVCSV 475
           +AP L +              ++ +A     AV  PQ       +A+ GM A +A+    
Sbjct: 357 FAPMLALG------------TLLGTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRA 404
Query: 476 PLTSVLLLFELTRDYRILLPLM 497
           PLT ++L+ E+T +Y+++LP++
Sbjct: 405 PLTGIVLVLEMTDNYQLILPMI 426
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+ ANTIPORTER Length = 466 Back     alignment and structure
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445f Mutant And Fab Complex Length = 473 Back     alignment and structure
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445h Mutant And Fab Complex Length = 473 Back     alignment and structure
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC- Ec1 Length = 473 Back     alignment and structure
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And Fab Complex Length = 465 Back     alignment and structure
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli Length = 473 Back     alignment and structure
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab Complexed In Absence Of Bound Ions Length = 473 Back     alignment and structure
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1 Length = 473 Back     alignment and structure
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC- Ec1 From E.Coli Length = 465 Back     alignment and structure
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148q Mutant And Fab Complex Length = 465 Back     alignment and structure
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445a Mutant And Fab Complex Length = 473 Back     alignment and structure
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER CLC-Ec1 From E.Coli Length = 465 Back     alignment and structure
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445w Mutant And Fab Complex Length = 473 Back     alignment and structure
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445l Mutant And Fab Complex Length = 473 Back     alignment and structure
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+ ANTIPORTER And Fab Complex Length = 446 Back     alignment and structure
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148a Mutant And Fab Complex Length = 465 Back     alignment and structure
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC, In Complex With A Fab Fragment Length = 473 Back     alignment and structure
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of E.Coli Clc_ec1, Cl-H+ ANTIPORTER Length = 473 Back     alignment and structure
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel Y445e Mutant And Fab Complex Length = 444 Back     alignment and structure
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex With Fab Length = 444 Back     alignment and structure
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+ Transporter Length = 465 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1ots_A465 Voltage-gated CLC-type chloride channel ERIC; CLC 9e-82
3nd0_A466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 7e-81
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 9e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465 Back     alignment and structure
 Score =  260 bits (666), Expect = 9e-82
 Identities = 100/450 (22%), Positives = 167/450 (37%), Gaps = 38/450 (8%)

Query: 59  PLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEW 118
                 +              L E      A+L +  ++G   GL    F+KGV  +   
Sbjct: 4   DTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQ 63

Query: 119 AWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQIK 168
                 +    +  L           L      +    +           G+ EI   ++
Sbjct: 64  RMGALVHTADNYPLL------LTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALE 117

Query: 169 QSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS-LMMENN 227
               +       V       K      TLG G  LG EGP+V IG +       +     
Sbjct: 118 DQRPVRWWRVLPV-------KFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKG 170

Query: 228 RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISST 287
            E +  L+A GAA+G+A+ FNA +AG  F IE +    R       +   + +  ++S+ 
Sbjct: 171 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRY---TLISIKAVFIGVIMSTI 227

Query: 288 VSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF 347
           +  +     +   V          L LYLILG++ G+   +F + V         +    
Sbjct: 228 MYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGN 287

Query: 348 GLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVV 407
               V+     G   G++    P     GF  +              + +L  +  A+V+
Sbjct: 288 ITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATA-----GNFSMGMLVFIFVARVI 342

Query: 408 ATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAA 467
            T LC  SG  GG++AP L +G  +G  FG  A E+            E   +A+ GM A
Sbjct: 343 TTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL------FPQYHLEAGTFAIAGMGA 396

Query: 468 TLASVCSVPLTSVLLLFELTRDYRILLPLM 497
            LA+    PLT ++L+ E+T +Y+++LP++
Sbjct: 397 LLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466 Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
1ots_A465 Voltage-gated CLC-type chloride channel ERIC; CLC 100.0
3nd0_A466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 100.0
4ene_A446 CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem 100.0
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 100.0
1ots_A465 Voltage-gated CLC-type chloride channel ERIC; CLC 99.46
4ene_A446 CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem 99.45
3nd0_A466 SLL0855 protein; CLC family CL-/H+ antiporter, CLC 99.41
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 99.15
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Back     alignment and structure
Probab=100.00  E-value=5.1e-62  Score=520.08  Aligned_cols=385  Identities=25%  Similarity=0.375  Sum_probs=322.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHH-HHHHHHHHHHHHHHHHH-----
Q 010949           85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWH-RILLIPVTGGVIVGMMH-----  158 (497)
Q Consensus        85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~llip~~ggllvgl~~-----  158 (497)
                      ...++++++++++|+++|+++.+|+.++++++++++...+..       .....+|| .++++|++++++++++.     
T Consensus        30 ~~~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p  102 (465)
T 1ots_A           30 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-------ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP  102 (465)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            455788899999999999999999999999999886532110       00012333 34577888887777652     


Q ss_pred             -----HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc-CHHHHH
Q 010949          159 -----GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKI  232 (497)
Q Consensus       159 -----g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~-~~~~r~  232 (497)
                           |++++++.+++..       ++...+..+.|++++++++++|+|+|||||++|+|+++|+.++++++. ++++||
T Consensus       103 ~a~GsGip~v~~~l~~~~-------~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l~~~~~~r  175 (465)
T 1ots_A          103 EAGGSGIPEIEGALEDQR-------PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARH  175 (465)
T ss_dssp             GGSSCSHHHHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred             cccCCChHHHHHHHhCCC-------CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhccCCHHHHH
Confidence                 4556666555421       122345678999999999999999999999999999999999999994 788888


Q ss_pred             HHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhH
Q 010949          233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAEL  312 (497)
Q Consensus       233 ~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l  312 (497)
                      .+++||+|||++++||||++|++|++|++.++++.+..   ..+|+++++++++++++.+.|.++.|.++..+..++.++
T Consensus       176 ~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~G~~~~f~~~~~~~~~~~~l  252 (465)
T 1ots_A          176 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTL  252 (465)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHHSCSCCSSCCCCCCCCCGGGH
T ss_pred             HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHcCCCceeecCCCCCCCHHHH
Confidence            89999999999999999999999999999887765431   146789999999999999999999999988776678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCC
Q 010949          313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASA  392 (497)
Q Consensus       313 ~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~  392 (497)
                      ++++++|++||++|.+|++.+.+.++++++++++.++++++++.++|++++++++++|+++++|++.++++++++     
T Consensus       253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~lG~G~~~i~~~~~~~-----  327 (465)
T 1ots_A          253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN-----  327 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCSTTHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHcCC-----
Confidence            999999999999999999999999998877642211234578999999999999999999999999999998864     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHH
Q 010949          393 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV  472 (497)
Q Consensus       393 ~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v  472 (497)
                      ...+.++.+++.|+++|.+|+|+|++||+|+|++++||++|+++|.+++.    .+|+.  ..+|..|+++||+|+++++
T Consensus       328 ~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~----~~p~~--~~~~~~~alvGmaa~~a~v  401 (465)
T 1ots_A          328 FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE----LFPQY--HLEAGTFAIAGMGALLAAS  401 (465)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHH----HCGGG--TCCHHHHHHHHHTHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHH----HCCcc--cccHHHHHHHHHHHHHHHH
Confidence            33566778889999999999999999999999999999999999987654    35652  3689999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCccchhcCC
Q 010949          473 CSVPLTSVLLLFELTRDYRILLPLM  497 (497)
Q Consensus       473 ~r~Plt~vvl~~Eltg~~~~llPlm  497 (497)
                      +|+|+|++++++||||++++++|+|
T Consensus       402 ~raPlt~ivlv~Eltg~~~~llpl~  426 (465)
T 1ots_A          402 IRAPLTGIILVLEMTDNYQLILPMI  426 (465)
T ss_dssp             SCCHHHHHHHHHHHHCCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999999999976
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Back     alignment and structure
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Back     alignment and structure
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Back     alignment and structure
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... Back     alignment and structure
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d1otsa_444 f.20.1.1 (A:) Clc chloride channel {Escherichia co 3e-49
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  173 bits (438), Expect = 3e-49
 Identities = 97/418 (23%), Positives = 162/418 (38%), Gaps = 32/418 (7%)

Query: 88  WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 147
            A+L +  ++G   GL    F+KGV  +                 L   AD +  +L + 
Sbjct: 17  LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA----------LVHTADNYPLLLTVA 66

Query: 148 VTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTI-------KAIQAAVTLGTG 200
                ++ M    L      +   S   +    +    P         K      TLG G
Sbjct: 67  FLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGG 126

Query: 201 CSLGPEGPSVDIGKSCANGFS-LMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIE 259
             LG EGP+V IG +       +      E +  L+A GAA+G+A+ FNA +AG  F IE
Sbjct: 127 MVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIE 186

Query: 260 TVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILG 319
            +    R       +   + +  ++S+ +  +     +   V          L LYLILG
Sbjct: 187 EMRPQFR---YTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILG 243

Query: 320 MLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTN 379
           ++ G+   +F + V         +        V+     G   G++    P     GF  
Sbjct: 244 IIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNL 303

Query: 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGS 439
           +        +        + +     V+ T LC  SG  GG++AP L +G  +G  FG  
Sbjct: 304 IPIATAGNFSMGMLVFIFVAR-----VITTLLCFSSGAPGGIFAPMLALGTVLGTAFG-- 356

Query: 440 AAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
              +     P      E   +A+ GM A LA+    PLT ++L+ E+T +Y+++LP++
Sbjct: 357 --MVAVELFPQYHL--EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 410

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1otsa_444 Clc chloride channel {Escherichia coli [TaxId: 562 100.0
d1otsa_444 Clc chloride channel {Escherichia coli [TaxId: 562 99.39
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-56  Score=467.15  Aligned_cols=386  Identities=25%  Similarity=0.382  Sum_probs=311.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------
Q 010949           85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------  158 (497)
Q Consensus        85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~------  158 (497)
                      ...++++++++++|+++|+.+.+|+..+++++++++...++...      +....+..+++.+...+++++++.      
T Consensus        14 ~~~l~~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~   87 (444)
T d1otsa_          14 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD------NYPLLLTVAFLCSAVLAMFGYFLVRKYAPE   87 (444)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cccHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            45578889999999999999999999999999987653222110      001111112222333333334331      


Q ss_pred             ----HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc-CHHHHHH
Q 010949          159 ----GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIA  233 (497)
Q Consensus       159 ----g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~-~~~~r~~  233 (497)
                          |++|+++.+++..       ++...+..+.|++++++++++|+|+|||||++|+|++++++++++++. +++++|.
T Consensus        88 ~~GsGipev~~~l~~~~-------~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~~~~~~~~~~r~  160 (444)
T d1otsa_          88 AGGSGIPEIEGALEDQR-------PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHT  160 (444)
T ss_dssp             GSSCSHHHHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             cCCCCHHHHHHHHhCCC-------CCccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHHhhhhHHhhHH
Confidence                3456666555431       222345567899999999999999999999999999999999999985 4566677


Q ss_pred             HHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHH
Q 010949          234 LVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELP  313 (497)
Q Consensus       234 l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~  313 (497)
                      +++||+|||++++||||++|++|++|++.++++.+..   .+.++++++++++.+.+.+.++.+.|++++.+..++.+++
T Consensus       161 l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (444)
T d1otsa_         161 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLW  237 (444)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHHSCSCCSSCCCCCCCCCGGGHH
T ss_pred             HHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHH---HHHHHHhhhHHHhhheeeccCcccccccccccCCCHHHHH
Confidence            9999999999999999999999999999887654322   2467788999999999999999999999887777889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCc
Q 010949          314 LYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAP  393 (497)
Q Consensus       314 ~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~  393 (497)
                      +++++|++||++|.+|++.+.++.+++++.+++...++.+...+.+.+++++.++.|..+++|++++++.++++.     
T Consensus       238 ~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~p~~~g~G~~~~~~~~~~~~-----  312 (444)
T d1otsa_         238 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNF-----  312 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCSTTHHHHHHHTCS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHhccCcccCCCchHHHHHHhcCCc-----
Confidence            999999999999999999999999988877654333344555666677788888999999999999999888754     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHh
Q 010949          394 GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVC  473 (497)
Q Consensus       394 ~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~  473 (497)
                      ..+.++.+.+.|+++|.+|+++|++||.|+|++++|+++|++++.++..+    +|+.  ..+|..|+++||+|++++++
T Consensus       313 ~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~----~~~~--~~~~~~~alvGmaa~~a~~~  386 (444)
T d1otsa_         313 SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL----FPQY--HLEAGTFAIAGMGALLAASI  386 (444)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHH----CGGG--TCCHHHHHHHHHTHHHHHTS
T ss_pred             chHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHh----CCcc--cCCHHHHHHHHHHHHHHHHH
Confidence            34667778889999999999999999999999999999999999876543    4542  26899999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCccchhcCC
Q 010949          474 SVPLTSVLLLFELTRDYRILLPLM  497 (497)
Q Consensus       474 r~Plt~vvl~~Eltg~~~~llPlm  497 (497)
                      |+|+|++++++|+||++++++|+|
T Consensus       387 ~~Plta~vl~~Eltg~~~~~~p~~  410 (444)
T d1otsa_         387 RAPLTGIILVLEMTDNYQLILPMI  410 (444)
T ss_dssp             CCHHHHHHHHHHHHCCGGGHHHHH
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHH
Confidence            999999999999999999999975
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Back     information, alignment and structure