Citrus Sinensis ID: 011084

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
ccccccccccccHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHHccccccccccEEEccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccEEccccccccccccccc
ccccccccHcHHHHHHHHHHHccccccHcccccccccccccccccccccHHHHHHHccccccccEEEEEcccccccccHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEccccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccHHHHHHHHHHHccccEEEEcccHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHccHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHcccccHHHHHHHHHHccc
mdsdfgipreLSGLQQLrslyqpelppclqgttvrvefgdstttadpadthsisrsfphtygqpLAHFLRAtakvpdaqiitehpairvgivfcgrqspgghnvvWGLYDAlklhnpkstllgflggseglfaQKTLEVTKEILSTYknqggydmlgrtkDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFaeakcptkvvgvpvtlngdlknqfvetNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALEctlqshpnmVILGEEVAASKLTLFDLTKQICDAVQARAEqdknhgvillpeglieSIPEVYALLKEIHSLLRqgvpvdnissqlsPWASALFEflppfikkqlllqpesddsaqLSQIETEKLLAHLVEVEMNKrlkegtykgkkfnaichffgyqargslpskfdcdyaYVLGHICYHILAAGLNGYMATVtnlknpankwrcgaapitvRFSFFSIV
MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILStyknqggydmLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRlkegtykgkkFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTllgflggseglfAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
************************LPPCLQGTTVRVEF******************FPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLL**************TEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSI*
******I*RELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLR**********ITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTK******EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQ********LSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
***DFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
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MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRFSFFSIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query494 2.2.26 [Sep-21-2011]
Q41140 617 Pyrophosphate--fructose 6 N/A no 0.989 0.792 0.907 0.0
P21342 616 Pyrophosphate--fructose 6 N/A no 0.989 0.793 0.873 0.0
Q9C9K3 617 Pyrophosphate--fructose 6 yes no 0.989 0.792 0.862 0.0
Q9SYP2 614 Pyrophosphate--fructose 6 no no 0.989 0.796 0.856 0.0
Q8W4M5566 Pyrophosphate--fructose 6 no no 0.912 0.796 0.434 1e-106
F4JGR5569 Pyrophosphate--fructose 6 no no 0.886 0.769 0.426 1e-103
P21343552 Pyrophosphate--fructose 6 N/A no 0.908 0.813 0.429 1e-103
Q41141552 Pyrophosphate--fructose 6 N/A no 0.937 0.838 0.422 1e-102
Q9C5J7485 6-phosphofructokinase 7 O no no 0.530 0.540 0.250 2e-15
Q94AA4489 6-phosphofructokinase 3 O no no 0.431 0.435 0.255 2e-13
>sp|Q41140|PFPA_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1 Back     alignment and function desciption
 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/489 (90%), Positives = 461/489 (94%)

Query: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60
           MDSDFGIPRELS LQ+LRSLY+PELPPCLQGTTVRVE GD TT    A  H+ISRSFPHT
Sbjct: 1   MDSDFGIPRELSDLQKLRSLYKPELPPCLQGTTVRVELGDGTTACSEAGAHTISRSFPHT 60

Query: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120
           YGQPLAHFLRATAKV DA II+EHPA+RVG+VFCGRQSPGGHNVVWGL++ALK+HNP ST
Sbjct: 61  YGQPLAHFLRATAKVADAHIISEHPAMRVGVVFCGRQSPGGHNVVWGLHNALKIHNPNST 120

Query: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180
           LLGFLGGSEGLFAQKTLEVT +ILSTYKNQGGYD+LGRTKDQIRTTEQV+AALT CKNL 
Sbjct: 121 LLGFLGGSEGLFAQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTTEQVHAALTTCKNLK 180

Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
           LDGLVIIGGVTSNTDAA LAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV
Sbjct: 181 LDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240

Query: 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD 300
           NSQLISNVCTDALSAEKYYYFIRLMGR+ASHVALECTLQSHPNMVILGEEVAASKLTLFD
Sbjct: 241 NSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFD 300

Query: 301 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 360
           LTKQ+CDAVQARAEQDK HGVILLPEGLIESIPEVYALLKEIH LLRQGV  +NISSQLS
Sbjct: 301 LTKQVCDAVQARAEQDKYHGVILLPEGLIESIPEVYALLKEIHGLLRQGVSPNNISSQLS 360

Query: 361 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 420
           PWASALFEFLPPFIKKQLLL PESDDSAQLSQIETEKLLAHLVE EMNKRLKEGTYKGKK
Sbjct: 361 PWASALFEFLPPFIKKQLLLYPESDDSAQLSQIETEKLLAHLVEAEMNKRLKEGTYKGKK 420

Query: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480
           FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYH+LAAGLNGYMAT TNLKNP NKWRCG
Sbjct: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNKWRCG 480

Query: 481 AAPITVRFS 489
           AAPI    +
Sbjct: 481 AAPIAAMMT 489
The alpha subunit may be involved in the regulation of PFP by Fru-2,6-P.
Ricinus communis (taxid: 3988)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 9EC: 0
>sp|P21342|PFPA_SOLTU Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q9C9K3|PFPA2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 OS=Arabidopsis thaliana GN=PFP-ALPHA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYP2|PFPA1_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 OS=Arabidopsis thaliana GN=PFP-ALPHA1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4M5|PFPB1_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 OS=Arabidopsis thaliana GN=PFP-BETA1 PE=2 SV=1 Back     alignment and function description
>sp|F4JGR5|PFPB2_ARATH Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 OS=Arabidopsis thaliana GN=PFP-BETA2 PE=2 SV=1 Back     alignment and function description
>sp|P21343|PFPB_SOLTU Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2 Back     alignment and function description
>sp|Q41141|PFPB_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1 Back     alignment and function description
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
162955859 615 pyrophosphate-dependent phosphofructokin 0.981 0.788 1.0 0.0
3790102 615 pyrophosphate-dependent phosphofructokin 0.981 0.788 0.993 0.0
255539346 617 phosphofructokinase, putative [Ricinus c 0.989 0.792 0.914 0.0
224086120 617 predicted protein [Populus trichocarpa] 0.989 0.792 0.914 0.0
118484164 617 unknown [Populus trichocarpa] 0.989 0.792 0.914 0.0
224061821 617 predicted protein [Populus trichocarpa] 0.989 0.792 0.907 0.0
2499488 617 RecName: Full=Pyrophosphate--fructose 6- 0.989 0.792 0.907 0.0
225457674 616 PREDICTED: pyrophosphate--fructose 6-pho 0.989 0.793 0.895 0.0
356521092 617 PREDICTED: pyrophosphate--fructose 6-pho 0.979 0.784 0.904 0.0
449455649 619 PREDICTED: pyrophosphate--fructose 6-pho 0.989 0.789 0.881 0.0
>gi|162955859|gb|ABY25305.1| pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus sinensis x Citrus trifoliata] Back     alignment and taxonomy information
 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/485 (100%), Positives = 485/485 (100%)

Query: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60
           MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT
Sbjct: 1   MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60

Query: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120
           YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST
Sbjct: 61  YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120

Query: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180
           LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN
Sbjct: 121 LLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180

Query: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
           LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV
Sbjct: 181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240

Query: 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD 300
           NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD
Sbjct: 241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD 300

Query: 301 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 360
           LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS
Sbjct: 301 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 360

Query: 361 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 420
           PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK
Sbjct: 361 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 420

Query: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480
           FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG
Sbjct: 421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480

Query: 481 AAPIT 485
           AAPIT
Sbjct: 481 AAPIT 485

Source: Citrus sinensis x Citrus trifoliata

Species: Citrus sinensis x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|3790102|gb|AAC67587.1| pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi] Back     alignment and taxonomy information
>gi|255539346|ref|XP_002510738.1| phosphofructokinase, putative [Ricinus communis] gi|223551439|gb|EEF52925.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224086120|ref|XP_002307823.1| predicted protein [Populus trichocarpa] gi|222857272|gb|EEE94819.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484164|gb|ABK93964.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061821|ref|XP_002300615.1| predicted protein [Populus trichocarpa] gi|222842341|gb|EEE79888.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2499488|sp|Q41140.1|PFPA_RICCO RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase gi|483547|emb|CAA83682.1| pyrophosphate-dependent phosphofructokinase alpha subunit [Ricinus communis] Back     alignment and taxonomy information
>gi|225457674|ref|XP_002276269.1| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521092|ref|XP_003529192.1| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|449455649|ref|XP_004145564.1| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Cucumis sativus] gi|449485066|ref|XP_004157061.1| PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
TAIR|locus:2011671 617 AT1G76550 [Arabidopsis thalian 0.981 0.786 0.845 8.3e-225
TAIR|locus:2037385 614 AT1G20950 [Arabidopsis thalian 0.981 0.789 0.839 1.1e-222
TAIR|locus:2008920566 AT1G12000 [Arabidopsis thalian 0.912 0.796 0.425 2.7e-93
TAIR|locus:2136652569 MEE51 "maternal effect embryo 0.912 0.792 0.409 5.1e-90
TIGR_CMR|CHY_1143321 CHY_1143 "6-phosphofructokinas 0.447 0.688 0.246 1.4e-09
TAIR|locus:2165046485 PFK7 "phosphofructokinase 7" [ 0.514 0.523 0.234 2.8e-09
TAIR|locus:2118249473 PFK1 "phosphofructokinase 1" [ 0.412 0.431 0.247 1.1e-08
UNIPROTKB|O34529319 pfkA "6-phosphofructokinase" [ 0.384 0.595 0.251 2.1e-08
TAIR|locus:2136849489 PFK3 "phosphofructokinase 3" [ 0.429 0.433 0.234 2.6e-08
TIGR_CMR|BA_4844319 BA_4844 "6-phosphofructokinase 0.455 0.705 0.231 5.3e-08
TAIR|locus:2011671 AT1G76550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
 Identities = 410/485 (84%), Positives = 438/485 (90%)

Query:     1 MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHT 60
             MDSDFGIPRELS LQQLRS Y PELPPCLQGTTVRVE GD TT A   D H I+R+FPHT
Sbjct:     1 MDSDFGIPRELSPLQQLRSQYHPELPPCLQGTTVRVELGDGTTVAKAGDAHIIARAFPHT 60

Query:    61 YGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKST 120
              GQPLAHFLRATAKV DAQIITEHP  RVGIVFCGRQ+PGGHNVVWGLY+ALK+HN K+T
Sbjct:    61 LGQPLAHFLRATAKVADAQIITEHPVKRVGIVFCGRQAPGGHNVVWGLYEALKVHNAKNT 120

Query:   121 XXXXXXXXXXXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLN 180
                         AQKTLE+T E+L TYKNQGGYDMLGRTKDQIRTTEQVNAAL AC +L 
Sbjct:   121 LLGFLGGSEGLFAQKTLEITDEVLQTYKNQGGYDMLGRTKDQIRTTEQVNAALKACTDLK 180

Query:   181 LDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 240
             LD LVIIGGVTSNTDAA+LAE FAEAKC TKVVGVPVT+NGDLKNQFVE NVGFDT CKV
Sbjct:   181 LDSLVIIGGVTSNTDAAHLAEFFAEAKCSTKVVGVPVTINGDLKNQFVEANVGFDTTCKV 240

Query:   241 NSQLISNVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFD 300
             NSQLISN+CTDALSAEKYYYF+RLMGR+ SHVALECTLQSHPNMVILGEEV ASKLT+FD
Sbjct:   241 NSQLISNICTDALSAEKYYYFVRLMGRKHSHVALECTLQSHPNMVILGEEVTASKLTIFD 300

Query:   301 LTKQICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLS 360
             + KQICDAVQARAEQDKNHGVIL+PEGL+ESIPE+YALLKEIH LL++GV VDNIS+QLS
Sbjct:   301 IIKQICDAVQARAEQDKNHGVILIPEGLVESIPELYALLKEIHGLLKEGVQVDNISTQLS 360

Query:   361 PWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKK 420
              W+SALFEFLPPFIKKQLLL PESDDSAQLSQIETEKLLA+LVE EMNKRLKEGTYKGKK
Sbjct:   361 SWSSALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAYLVETEMNKRLKEGTYKGKK 420

Query:   421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCG 480
             FNAICHFFGYQARGSLPSKFDCDYAYVLGH+CYHILAAGLNGYMATVTNLK+P NKW+CG
Sbjct:   421 FNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATVTNLKSPVNKWKCG 480

Query:   481 AAPIT 485
             AAPI+
Sbjct:   481 AAPIS 485
GO:0003872 "6-phosphofructokinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005945 "6-phosphofructokinase complex" evidence=IEA
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0010317 "pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex" evidence=ISS
GO:0047334 "diphosphate-fructose-6-phosphate 1-phosphotransferase activity" evidence=IEA;ISS;IMP
GO:0015979 "photosynthesis" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2037385 AT1G20950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008920 AT1G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136652 MEE51 "maternal effect embryo arrest 51" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1143 CHY_1143 "6-phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O34529 pfkA "6-phosphofructokinase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4844 BA_4844 "6-phosphofructokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41140PFPA_RICCO2, ., 7, ., 1, ., 9, 00.90790.98980.7925N/Ano
P21342PFPA_SOLTU2, ., 7, ., 1, ., 9, 00.87320.98980.7938N/Ano
Q9C9K3PFPA2_ARATH2, ., 7, ., 1, ., 9, 00.86290.98980.7925yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.900.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 0.0
TIGR02477539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 0.0
PRK07085555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 0.0
cd00765550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 1e-156
PLN02251568 PLN02251, PLN02251, pyrophosphate-dependent phosph 1e-150
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 1e-112
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 1e-103
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 2e-92
cd00363338 cd00363, PFK, Phosphofructokinase, a key regulator 1e-61
COG0205347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 8e-59
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 4e-50
TIGR02482301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 1e-13
PTZ00286459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 2e-12
PRK06830443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 3e-10
PLN02564484 PLN02564, PLN02564, 6-phosphofructokinase 1e-09
TIGR02483324 TIGR02483, PFK_mixed, phosphofructokinase 8e-09
PRK03202320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 1e-08
PLN02884411 PLN02884, PLN02884, 6-phosphofructokinase 2e-08
cd00763317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 1e-07
pfam00365279 pfam00365, PFK, Phosphofructokinase 3e-07
PRK14071360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 5e-06
TIGR02478746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 0.002
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information 
 Score = 1056 bits (2732), Expect = 0.0
 Identities = 437/478 (91%), Positives = 458/478 (95%)

Query: 8   PRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAH 67
           PRELSGLQ+LRSLYQPELPPCLQGTTVRVE GD+TT ADPAD H+ISR+FPHTYGQPLAH
Sbjct: 1   PRELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAH 60

Query: 68  FLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGG 127
           FLRATAKVPDAQ+ITEHPA+RVG+VFCGRQSPGGHNV+WGL+DALK HNP S LLGFLGG
Sbjct: 61  FLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGG 120

Query: 128 SEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVII 187
           +EGLFAQKTLE+T ++LSTYKNQGGYD+LGRTKDQIRTTEQVNAAL AC+ L LDGLVII
Sbjct: 121 TEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVII 180

Query: 188 GGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 247
           GGVTSNTDAA LAETFAEAKC TKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN
Sbjct: 181 GGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISN 240

Query: 248 VCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICD 307
           VCTDALSAEKYYYFIRLMGR+ASHVALEC LQSHPNMVILGEEVAASKLTLFD+TKQICD
Sbjct: 241 VCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICD 300

Query: 308 AVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPVDNISSQLSPWASALF 367
           AVQARAEQDKNHGVIL+PEGLIESIPEVYALL+EIH LL+QGV VDNISSQLSPWASALF
Sbjct: 301 AVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALF 360

Query: 368 EFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHF 427
           EFLPPFIKKQLLL PESDDSAQLSQIETEKLLA LVE EMNKR KEGTYKGKKFNAICHF
Sbjct: 361 EFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHF 420

Query: 428 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPIT 485
           FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLK+P NKWRCGAAPIT
Sbjct: 421 FGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPIT 478

Length = 610
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 494
PLN02251568 pyrophosphate-dependent phosphofructokinase 100.0
PLN03028 610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
cd00765550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
PRK14072416 6-phosphofructokinase; Provisional 100.0
PLN02564484 6-phosphofructokinase 100.0
COG0205347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
PTZ00286459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884411 6-phosphofructokinase 100.0
PRK06830443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 100.0
PRK03202320 6-phosphofructokinase; Provisional 100.0
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
PRK14071360 6-phosphofructokinase; Provisional 100.0
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
cd00764762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
PRK04761246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 91.35
PRK00561259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.03
PRK04885265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.81
PRK14077287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 90.65
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 89.48
COG3199355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 87.9
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 87.47
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 87.02
PRK01911292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 86.18
PRK14075256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 85.94
PLN02929301 NADH kinase 85.5
PRK02649305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 85.34
cd08180332 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes 85.2
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 85.12
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844100 GARS_N: Phosphoribosylglycinamide synthetase, N do 84.72
PRK03378292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 84.17
PRK03372306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 84.04
PRK03708277 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 83.55
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 83.48
PLN02935508 Bifunctional NADH kinase/NAD(+) kinase 83.46
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 83.02
cd08177337 MAR Maleylacetate reductase is involved in many ar 82.79
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 82.59
cd08172347 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol 81.85
PRK00843350 egsA NAD(P)-dependent glycerol-1-phosphate dehydro 81.66
PRK03501264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 81.34
PRK15454395 ethanol dehydrogenase EutG; Provisional 80.82
cd08186383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 80.77
cd08170351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 80.43
cd07766332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 80.16
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 80.08
cd08179375 NADPH_BDH NADPH-dependent butanol dehydrogenase in 80.01
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=6.4e-132  Score=1066.34  Aligned_cols=473  Identities=43%  Similarity=0.740  Sum_probs=454.7

Q ss_pred             CChhhhhhhcCCCCCCcCCCCCceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEEE
Q 011084           11 LSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVG   90 (494)
Q Consensus        11 ~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig   90 (494)
                      .|+||++|+.|+|+||++|+++ +++.+++.++++  .++++|+++||||||+|.++|++...     .......++|||
T Consensus        29 ~s~~q~~r~~~~p~lp~~l~~~-~~~~~~~~~~~~--~~~~~i~~~fp~~~~~~~~~~~~~~~-----~~~~~~~~~~IG  100 (568)
T PLN02251         29 YSEVQSSRIDHALPLPSVLKGP-FKIVDGPPSSAA--GNPEEIAKLFPNLFGQPSVMLVPSQA-----DALSSDQKLKIG  100 (568)
T ss_pred             cCHHHHHHHhCCCCCChhhcCc-eEEEecCccccc--CCHHHHHHhChHhhCCceEEEeeccC-----ccccccccceEE
Confidence            8999999999999999999886 999999998877  88999999999999999999998531     112224568999


Q ss_pred             EEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHHH
Q 011084           91 IVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVN  170 (494)
Q Consensus        91 Il~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~~  170 (494)
                      |||||||||||||||+|+++++++.+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++++++
T Consensus       101 Iv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~  180 (568)
T PLN02251        101 VVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK  180 (568)
T ss_pred             EECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHHH
Q 011084          171 AALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCT  250 (494)
Q Consensus       171 ~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~~  250 (494)
                      +++++|++++||+||+|||||||++|+.|+|||+++|++++||||||||||||+++|+|+|||||||+++++++|+||++
T Consensus       181 ~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~  260 (568)
T PLN02251        181 QAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMI  260 (568)
T ss_pred             HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q 011084          251 DALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLIE  330 (494)
Q Consensus       251 da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~~  330 (494)
                      ||.|++|||||||+|||+||||||+||||||||+|||||++++++++|+||++.|++.|++|+.+|++|||||||||+++
T Consensus       261 da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie  340 (568)
T PLN02251        261 DARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLID  340 (568)
T ss_pred             HHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhhcCCCC--CcccccCChhhhhhhccChhHHHhhhhcCCCCCCCcccchhhhHHHHHHHHHHHHH
Q 011084          331 SIPEVYALLKEIHSLLRQGVPV--DNISSQLSPWASALFEFLPPFIKKQLLLQPESDDSAQLSQIETEKLLAHLVEVEMN  408 (494)
Q Consensus       331 ~~~~~~~li~e~~~~~~~~~~~--~~~~~~l~~~~~~~f~~lp~~i~~~l~~~~D~~G~~~~~~i~te~~L~~lv~~~l~  408 (494)
                      ++|+++.||+|++++++++..+  ..+.++||+|++++|++||++||+||+.+||+|||+|+++|+||++|++||+++|+
T Consensus       341 ~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~  420 (568)
T PLN02251        341 FIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELE  420 (568)
T ss_pred             hCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHh
Confidence            9999999999999999876543  45788999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcceEEccccHHhHh
Q 011084          409 KRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITVRF  488 (494)
Q Consensus       409 ~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~w~~~~vPl~~~~  488 (494)
                      +|+.+|+|+|+ |++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..|+++|.++++||++||
T Consensus       421 ~rk~~~~~~~~-f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~m  499 (568)
T PLN02251        421 KRKQEGSYKGH-FKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM  499 (568)
T ss_pred             hhccccccccc-cceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHh
Confidence            99999999997 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 011084          489 SFFS  492 (494)
Q Consensus       489 ~~~~  492 (494)
                      |+||
T Consensus       500 n~e~  503 (568)
T PLN02251        500 DVER  503 (568)
T ss_pred             hhhh
Confidence            9997

>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PLN02564 6-phosphofructokinase Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like Back     alignment and domain information
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
1kzh_A555 Structure Of A Pyrophosphate-dependent Phosphofruct 4e-92
4a3s_A319 Crystal Structure Of Pfk From Bacillus Subtilis Len 8e-09
6pfk_A319 Phosphofructokinase, Inhibited T-State Length = 319 3e-07
3pfk_A319 Phosphofructokinase. Structure And Control Length = 6e-07
1mto_A319 Crystal Structure Of A Phosphofructokinase Mutant F 9e-07
1zxx_A319 The Crystal Structure Of Phosphofructokinase From L 6e-06
2hig_A487 Crystal Structure Of Phosphofructokinase Apoenzyme 4e-04
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  335 bits (858), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 282/488 (57%), Gaps = 24/488 (4%)
Query: 14  LQQLRSLYQPELPPCLQG--TTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
            +Q R  Y P+LP  L+     + + +G++T      D  ++   F +TYG P+  F   
Sbjct: 6   FKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQ--DRQALKEFFKNTYGLPIISFTEG 63
Query: 72  TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXX 131
            + +  ++      A+ +GI+  G  +PGGHNV+ G++DA+K  NP S            
Sbjct: 64  ESSLSFSK------ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 117
Query: 132 XAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
                +E+T+ ++++Y+N GG+D++   + +I T E  N AL   K  NL+ ++IIGG  
Sbjct: 118 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 177
Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
           SNT+AA LAE F +     +V+GVP T++ DL+N  +E + GFD+  K+ S+LI N+C D
Sbjct: 178 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 237
Query: 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311
           A+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++  ++   +  
Sbjct: 238 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 297
Query: 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLR------QGVPVDNIS----SQLSP 361
           R+    N GV+++PEGLIE IPEV +L+ E+  +        +G+ ++ +     ++LS 
Sbjct: 298 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 357
Query: 362 WASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 418
           +   ++  LP FI+ +L   +L+ +   +  +S++ TEKL   +++  +N   K G YKG
Sbjct: 358 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 417
Query: 419 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 478
             F  + HFFGY+ R + PS FD DY Y LG+    ++  GL GYM+ + NL      W 
Sbjct: 418 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 476
Query: 479 CGAAPITV 486
            G  P+T+
Sbjct: 477 AGGVPLTM 484
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 0.0
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 7e-24
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 8e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 1e-11
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 3e-11
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 5e-11
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 9e-10
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 2e-06
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 1e-09
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 3e-07
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 2e-09
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 3e-07
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 1e-08
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 8e-06
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 3e-07
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 4e-06
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
 Score =  557 bits (1437), Expect = 0.0
 Identities = 179/489 (36%), Positives = 279/489 (57%), Gaps = 20/489 (4%)

Query: 10  ELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFL 69
             S  +Q R  Y P+LP  L+     +       T    D  ++   F +TYG P+  F 
Sbjct: 2   NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFT 61

Query: 70  RATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSE 129
              + +      +   A+ +GI+  G  +PGGHNV+ G++DA+K  NP S L GF GG  
Sbjct: 62  EGESSL------SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPL 115

Query: 130 GLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGG 189
           GL     +E+T+ ++++Y+N GG+D++   + +I T E  N AL   K  NL+ ++IIGG
Sbjct: 116 GLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGG 175

Query: 190 VTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC 249
             SNT+AA LAE F +     +V+GVP T++ DL+N  +E + GFD+  K+ S+LI N+C
Sbjct: 176 DDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC 235

Query: 250 TDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAV 309
            DA+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++  ++   +
Sbjct: 236 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295

Query: 310 QARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVPV----------DNISSQL 359
             R+    N GV+++PEGLIE IPEV +L+ E+  +  +              +   ++L
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355

Query: 360 SPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETEKLLAHLVEVEMNKRLKEGTY 416
           S +   ++  LP FI+ +L   +L+ +   +  +S++ TEKL   +++  +N   K G Y
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415

Query: 417 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK 476
           KG  F  + HFFGY+ R + PS FD DY Y LG+    ++  GL GYM+ + NL      
Sbjct: 416 KG-SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD 474

Query: 477 WRCGAAPIT 485
           W  G  P+T
Sbjct: 475 WIAGGVPLT 483
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 100.0
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 100.0
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 100.0
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
2an1_A292 Putative kinase; structural genomics, PSI, protein 93.32
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 89.91
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 88.61
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 84.88
1z0s_A278 Probable inorganic polyphosphate/ATP-NAD kinase; A 84.04
1oj7_A408 Hypothetical oxidoreductase YQHD; structural genom 81.21
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-121  Score=987.49  Aligned_cols=475  Identities=38%  Similarity=0.712  Sum_probs=448.2

Q ss_pred             CCCChhhhhhhcCCCCCCcCCCCCc--eeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCc
Q 011084            9 RELSGLQQLRSLYQPELPPCLQGTT--VRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPA   86 (494)
Q Consensus         9 ~~~s~l~~~r~~~~p~lp~~l~~~~--~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (494)
                      |++|+||++|+.|+|+||++|++..  ++++.++.+++.  .|+++|+++|||||++|.++|+++..   .   ...+++
T Consensus         1 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~---~---~~~~~~   72 (555)
T 2f48_A            1 MNTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES---S---LSFSKA   72 (555)
T ss_dssp             ---CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC---C---CSCCSC
T ss_pred             CCCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCc--cCHHHHHHhCccccCCCcEEEecCCc---c---cccCCC
Confidence            6799999999999999999999864  899999998877  99999999999999999999998751   1   135677


Q ss_pred             eEEEEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCCh
Q 011084           87 IRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTT  166 (494)
Q Consensus        87 ~~IgIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~  166 (494)
                      +||||+|||||||||||||+|++++++..+++++||||++||+||+++++++|+++.|+.|+++|||++|||+|.++.++
T Consensus        73 ~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~  152 (555)
T 2f48_A           73 LNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETE  152 (555)
T ss_dssp             CEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSH
T ss_pred             cEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCH
Confidence            99999999999999999999999998888889999999999999999999999999999999999944999999999899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHH
Q 011084          167 EQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLIS  246 (494)
Q Consensus       167 e~~~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~  246 (494)
                      +++++++++|++++||+||+||||||+++|+.|++++++++++++||||||||||||+++.||+|||||||+++++++|+
T Consensus       153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId  232 (555)
T 2f48_A          153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIG  232 (555)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 011084          247 NVCTDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPE  326 (494)
Q Consensus       247 nl~~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~E  326 (494)
                      +|++||.|+++||||||||||+||||||+||||++||+|||||++++++++|.+++++|++.|++|+.+||+|+||||||
T Consensus       233 ~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaE  312 (555)
T 2f48_A          233 NLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPE  312 (555)
T ss_dssp             HHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99999999998999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhhcCCC----------CCcccccCChhhhhhhccChhHHHhhhh---cCCCCCCCcccchh
Q 011084          327 GLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSPWASALFEFLPPFIKKQLL---LQPESDDSAQLSQI  393 (494)
Q Consensus       327 Gl~~~~~~~~~li~e~~~~~~~~~~----------~~~~~~~l~~~~~~~f~~lp~~i~~~l~---~~~D~~G~~~~~~i  393 (494)
                      |+++++|+++.|+.|++++++++..          .+.+.++||||++++|.+||..|++||+   .++|+|||+|+++|
T Consensus       313 G~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i  392 (555)
T 2f48_A          313 GLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRV  392 (555)
T ss_dssp             TGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTS
T ss_pred             CCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccc
Confidence            9999999999999999998876411          0245678999999999999999999997   78999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 011084          394 ETEKLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNP  473 (494)
Q Consensus       394 ~te~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~  473 (494)
                      +||++|+++|+++|++++.++.|+++ |++|+|+|||+||||.||+|||.||++||+.|++++++|+||+|++++|++.+
T Consensus       393 ~t~~~L~~~v~~~l~~~~~~~~~~~~-~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~  471 (555)
T 2f48_A          393 PTEKLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK  471 (555)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC
T ss_pred             cHHHHHHHHHHHHHHHHhcccCcccc-eeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            99999999999999999888999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEccccHHhHhcccc
Q 011084          474 ANKWRCGAAPITVRFSFFS  492 (494)
Q Consensus       474 ~~~w~~~~vPl~~~~~~~~  492 (494)
                      +|+|++.++||++|||+||
T Consensus       472 ~~~w~~~~vPl~~~~n~ek  490 (555)
T 2f48_A          472 PTDWIAGGVPLTMLMNMEE  490 (555)
T ss_dssp             GGGCEEEEEEGGGGEEEEE
T ss_pred             ccceEEEeeeHHHHhhhhh
Confidence            9999999999999999986
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 494
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 1e-145
d4pfka_319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 8e-36
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 1e-31
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 0.001
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  425 bits (1094), Expect = e-145
 Identities = 179/487 (36%), Positives = 275/487 (56%), Gaps = 20/487 (4%)

Query: 12  SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRA 71
           S  +Q R  Y P+LP  L+     +       T    D  ++   F +TYG P+  F   
Sbjct: 1   SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 60

Query: 72  TAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGL 131
            + +          A+ +GI+  G  +PGGHNV+ G++DA+K  NP S L GF GG  GL
Sbjct: 61  ESSLS------FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGL 114

Query: 132 FAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVT 191
                +E+T+ ++++Y+N GG+D++   + +I T E  N AL   K  NL+ ++IIGG  
Sbjct: 115 LENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDD 174

Query: 192 SNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 251
           SNT+AA LAE F +     +V+GVP T++ DL+N  +E + GFD+  K+ S+LI N+C D
Sbjct: 175 SNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRD 234

Query: 252 ALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQA 311
           A+S +KY++F++LMGR ASHVALEC L++HPN+ I+ EEV A K TL ++  ++   +  
Sbjct: 235 AMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILK 294

Query: 312 RAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLRQGVP----------VDNISSQLSP 361
           R+    N GV+++PEGLIE IPEV +L+ E+  +  +              +   ++LS 
Sbjct: 295 RSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSD 354

Query: 362 WASALFEFLPPFIKKQLLLQPESDDS---AQLSQIETEKLLAHLVEVEMNKRLKEGTYKG 418
           +   ++  LP FI+ +L+      D      +S++ TEKL   +++  +N   K G YKG
Sbjct: 355 YMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKG 414

Query: 419 KKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWR 478
             F  + HFFGY+ R + PS FD DY Y LG+    ++  GL GYM+ + NL      W 
Sbjct: 415 -SFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWI 473

Query: 479 CGAAPIT 485
            G  P+T
Sbjct: 474 AGGVPLT 480
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d1gsoa2105 Glycinamide ribonucleotide synthetase (GAR-syn), N 85.5
d1z0sa1249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 84.68
d1u0ta_302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 84.41
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 83.35
d2qv7a1312 Diacylglycerol kinase DgkB {Staphylococcus aureus 81.46
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 80.84
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 80.3
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 80.19
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=4.2e-126  Score=1022.95  Aligned_cols=472  Identities=38%  Similarity=0.718  Sum_probs=450.4

Q ss_pred             ChhhhhhhcCCCCCCcCCCCC--ceeeecCCCcccCCCCChHHHhhhCCCccCCCceeEecCccCCCccccccCCCceEE
Q 011084           12 SGLQQLRSLYQPELPPCLQGT--TVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRV   89 (494)
Q Consensus        12 s~l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I   89 (494)
                      |+||++|++|+|+||++|++.  .+++..++.+.++  .|+++|+++||+|++.|.++|.+++.      .....+++||
T Consensus         1 s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~fp~~~~~p~~~~~~~~~------~~~~~~~~rI   72 (550)
T d2f48a1           1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAI--QDRQALKEFFKNTYGLPIISFTEGES------SLSFSKALNI   72 (550)
T ss_dssp             CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCS--SCHHHHHHHTTTTTTCCCEEEEESCC------CCSCCSCCEE
T ss_pred             CHhHHHHHhCCCCCChhHhCccceeeeccCCccccc--CCHHHHHHHhHHhcCCceeeeccCCC------CCCcCCCCEE
Confidence            899999999999999999874  3788899888877  89999999999999999999998863      2334568999


Q ss_pred             EEEecCCCCCCcchhHHHHHHHHHhhCCCCEEEEEccchhhhhcCCeeecCHhHHhcccccCCcccccccCCCCCChHHH
Q 011084           90 GIVFCGRQSPGGHNVVWGLYDALKLHNPKSTLLGFLGGSEGLFAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQV  169 (494)
Q Consensus        90 gIl~sGG~aPG~n~vI~gl~~~~~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~v~~~~n~GG~~~lgS~R~k~~~~e~~  169 (494)
                      |||||||||||+||||+|+++++++.+++++||||++||+||+++++++|+++.++.|+|+|||++++|+|+++++++++
T Consensus        73 gIl~sGG~aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~~~L~~~~v~~~~~~GG~~l~~s~r~~~~~~e~~  152 (550)
T d2f48a1          73 GIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHY  152 (550)
T ss_dssp             EEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHH
T ss_pred             EEECcCCCcHHHHHHHHHHHHHHHHhCCCCEEEEECcchHHhcCCCEEECCHHHHhhHHhCCCcEecCCCCCCCcCHHHH
Confidence            99999999999999999999999988999999999999999999999999999999999999998888899999999999


Q ss_pred             HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHHHhcCCCCeEEEeeecccCCCCCCCCCCCcCchhHHHHHHHHHHHHH
Q 011084          170 NAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVC  249 (494)
Q Consensus       170 ~~~~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIgVPkTIDNDl~~~~ie~S~GFdTA~~~~~~~I~nl~  249 (494)
                      ++++++|++++||+||+||||||+++|+.|+||+++++.+++||||||||||||+++++|+|||||||+++++++|+|++
T Consensus       153 ~~i~~~l~~~~Id~LviIGGd~S~~~a~~Lae~~~~~~~~i~vigvPKTIDNDl~~~~~d~s~GfdTA~~~~~~~i~~l~  232 (550)
T d2f48a1         153 NKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLC  232 (550)
T ss_dssp             HHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHHHHhCCCccEEEecccccCCCCCccccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999878899999999999999999999


Q ss_pred             HHHhhccCceEEEEecCCCccHHHHHhhhhcCCcEEEeCCcchhhcccHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 011084          250 TDALSAEKYYYFIRLMGRRASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKNHGVILLPEGLI  329 (494)
Q Consensus       250 ~da~S~~k~~~~VevMGR~ag~lAl~~aLat~p~~ilIpEe~~~~~~tL~~i~~~i~~~i~~R~~~gk~~gvVlv~EGl~  329 (494)
                      +||.|+++||||||+|||+||||||+||||+|||+|||||++++++++|.+++++|++.|++|+..|++|||||||||++
T Consensus       233 ~da~S~~~~~~~VevMGR~aG~lAl~~alat~a~~ilipE~~~~~~~~L~~i~~~i~~~I~kR~~~gk~~gvIvV~EGli  312 (550)
T d2f48a1         233 RDAMSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLI  312 (550)
T ss_dssp             HHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGG
T ss_pred             HHHhhcccceEEEEEecCCCcHHHHHHHHhcCCceEEecccccchhhhHHHHHHHHHHHHHHHHHcCCCcEEEEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhhcCCCC----------CcccccCChhhhhhhccChhHHHhhh---hcCCCCCCCcccchhhhH
Q 011084          330 ESIPEVYALLKEIHSLLRQGVPV----------DNISSQLSPWASALFEFLPPFIKKQL---LLQPESDDSAQLSQIETE  396 (494)
Q Consensus       330 ~~~~~~~~li~e~~~~~~~~~~~----------~~~~~~l~~~~~~~f~~lp~~i~~~l---~~~~D~~G~~~~~~i~te  396 (494)
                      +++||++.||.|+++++.+...+          +.+.++|++|++++|++||.+||+||   +++||+|||+|+++|+||
T Consensus       313 ~~ipe~~~Li~el~~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~~~l~~~lp~~i~~qll~~~~~rD~~G~~~ls~I~~e  392 (550)
T d2f48a1         313 EFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTE  392 (550)
T ss_dssp             GTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHH
T ss_pred             ccchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcchhhhhhhhcccHHHHHHHhhcccccCCCCCeeeccccHH
Confidence            99999999999999998765321          23678899999999999999999999   578999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCccCCccceeeeecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCCcc
Q 011084          397 KLLAHLVEVEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANK  476 (494)
Q Consensus       397 ~~L~~lv~~~l~~~~~~g~y~g~~f~~r~~~lGy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~~~~~~~~  476 (494)
                      ++|+++|+++|++++.++.|++. |++++|+|||+|||+.||+||+.|||+||+.|++++++|+||||++|+|++.++++
T Consensus       393 ~lLa~~V~~~L~~~~~~~~~~~~-f~~~~h~~GYe~R~a~PS~fD~~~a~~lG~~Av~~~~~G~tG~M~~I~~l~~~~~~  471 (550)
T d2f48a1         393 KLFIEMIQSRLNDMKKRGEYKGS-FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTD  471 (550)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSC-CCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGG
T ss_pred             HHHHHHHHHHHHHhhhhcccccc-eeeeecccccceeCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCce
Confidence            99999999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEccccHHhHhcccc
Q 011084          477 WRCGAAPITVRFSFFS  492 (494)
Q Consensus       477 w~~~~vPl~~~~~~~~  492 (494)
                      |.++++||++|||+|+
T Consensus       472 w~~~~iPl~~~m~~e~  487 (550)
T d2f48a1         472 WIAGGVPLTMLMNMEE  487 (550)
T ss_dssp             CEEEEEEGGGGEEEEE
T ss_pred             eEECCccHHHHhhHHH
Confidence            9999999999999987
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure