Citrus Sinensis ID: 011567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
Protein Sequence
MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccEEEcccccEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccEEEEccHHHHHHcccccccccccEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHccEEEEEEcccccccccccccccccccccccccEEEEEcccHHHHccccccEEccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEccEEEEEccccccccHHHcHHHHHHHHHHHHHHccccccEcccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccccccccEEEEEccEEccccccccHHHHHHHHHHcccEEEEEcccccEEEcccccccccccccccccEEEEEccHHHHHHccccccccHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MASFILNFVNTMLNRVKLaldspsagaVVFGVHISGHLFVEVLLLVVILFLLsqksykppkrpltkKEIDELCdewvpeslippiieemrceppvlesaagphtiisGKEVVNFASANYLGLIGHEKLLESCTSALekygvgscgprgfygtiDVHLDCEARIAKflgtpdsilysyglstmfsaipcfckkgdlivadeGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYqnsgqiaplDELIRLKEKYRFRVfldesnsfgvlgrsgrgltehcgvpvdKIDIVTAAMGHALateggfctgsarvvdhqrlsssgyvfsaslppylaSAAITAIDVLEENPDLITKLKKNTAILRTGlsdihglsiasnpespIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVvtskrsmldkcrlpvGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Flexible Loop (DISEMBL)
MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLsqksykppkrpltkkeiDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDmdslrntlervtadnkrakklRRYIVVEavyqnsgqiaplDELIRLKEKYRFRVFldesnsfgvlgrsgrgltehcgVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLsdihglsiasnpeSPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVvtskrsmldkcrLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Low Complexity Region (SEG)
MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHlfvevlllvvilfllSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFsaslppylasaaITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Disordered region (IsUnstruct)
***FILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQK***********KEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL****
Disordered Region (DISOPRED)
**SFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLL******************ELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLER******RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR***
Disordered Region (DISEMBL)
MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Disordered Region (DISPRO)
**SFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDxxxxxxxxxxxxxxxxxxxxxRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	483	2.2.26 [Sep-21-2011]
Q94IB8	482	Long chain base biosynthe	yes	no	0.991	0.993	0.776	0.0
Q6K8E7	481	Long chain base biosynthe	yes	no	0.962	0.966	0.731	0.0
Q10P01	485	Long chain base biosynthe	no	no	0.995	0.991	0.711	0.0
Q7G4P2	482	Long chain base biosynthe	no	no	0.962	0.964	0.709	0.0
O35704	473	Serine palmitoyltransfera	yes	no	0.904	0.923	0.465	1e-106
O54695	473	Serine palmitoyltransfera	yes	no	0.908	0.928	0.454	1e-105
O15269	473	Serine palmitoyltransfera	yes	no	0.908	0.928	0.454	1e-103
Q55FL5	479	Serine palmitoyltransfera	yes	no	0.921	0.929	0.434	1e-102
Q5R9T5	473	Serine palmitoyltransfera	yes	no	0.917	0.936	0.454	1e-101
Q60HD1	473	Serine palmitoyltransfera	N/A	no	0.904	0.923	0.454	1e-101

>sp|Q94IB8|LCB1_ARATH Long chain base biosynthesis protein 1 OS=Arabidopsis thaliana GN=LCB1 PE=1 SV=1

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/479 (77%), Positives = 426/479 (88%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS ++   N  LN V + L+SPSA  V+FGV I GH FVE LL VVI+ LL++KSYKPP
Sbjct: 1   MASNLVEMFNAALNWVTMILESPSARVVLFGVPIRGHFFVEGLLGVVIIILLTRKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT++EIDELCDEWVPE LIPPI E+M+ EPPVLESAAGPHT ++GK+VVNFASANYL
Sbjct: 61  KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFLGTPDSILYSYGLS
Sbjct: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFS IPCFCKKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDM+SLR TLE++    K
Sbjct: 181 TMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITLEKIMTKYK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           R+K LRRYIV EAVYQNSGQIAPLDE+++LKEKYRFRV LDESNSFGVLGRSGRGL EH 
Sbjct: 241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHH 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
            VP++KID+VTAAMGHALATEGGFCTG+AR++D+QRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 SVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DV+++NPD++ KLK+N A+L  GLSDI G+S+ SN ESPIVFL LEKS+GS K+DL LLE
Sbjct: 361 DVIDQNPDMLVKLKQNVALLWKGLSDIKGMSLTSNRESPIVFLKLEKSSGSAKDDLLLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            +AD ALKED + VV+SKRS LDKCRLPVGI+L+VSA HSE+DL+KA ESLKR+++ +L
Sbjct: 421 KMADRALKEDSLLVVSSKRSFLDKCRLPVGIKLYVSAGHSESDLLKASESLKRLASELL 479

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 5EC: 0

>sp|Q6K8E7|LCB1B_ORYSJ Long chain base biosynthesis protein 1b OS=Oryza sativa subsp. japonica GN=Os02g0806900 PE=2 SV=1

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/465 (73%), Positives = 395/465 (84%)

Query: 15  RVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCD 74
           RV    ++P A AVVFG+HI GHL VE LL+  ILF LS+KSYKPPK+PLT++E+DELCD
Sbjct: 17  RVSAMFNAPLARAVVFGIHIDGHLVVEGLLIAAILFQLSRKSYKPPKKPLTEREVDELCD 76

Query: 75  EWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTS 134
           EW PE L PPI E  R E P LESAAGPHTI+ GKEVVNFASANYLGLIG+EK+L+SC  
Sbjct: 77  EWQPEPLCPPIKEGARIEAPTLESAAGPHTIVDGKEVVNFASANYLGLIGNEKILDSCIG 136

Query: 135 ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD 194
           ++EKYGVGSCGPRGFYGTIDVHLDCE +IAKFLGT DSILYSYG+ST+FS IP FCKKGD
Sbjct: 137 SVEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTQDSILYSYGISTIFSVIPAFCKKGD 196

Query: 195 LIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254
           +IVADEGVHW +QNGL LSRSTVVYFKHNDM SL +TLE++T  NKR +K+RRYIVVEA+
Sbjct: 197 IIVADEGVHWAVQNGLQLSRSTVVYFKHNDMASLASTLEKLTHGNKRTEKIRRYIVVEAI 256

Query: 255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM 314
           YQNSGQIAPLDE++RLKEKYRFRV L+ES+SFGVLG+SGRGL EH GVP++KIDI+TA M
Sbjct: 257 YQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGKSGRGLAEHYGVPIEKIDIITAGM 316

Query: 315 GHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLK 374
           G+ALAT+GGFCTGS RVVDHQRLSSSGYVFSASLPPYLASAAI+A+D LEENP ++  L+
Sbjct: 317 GNALATDGGFCTGSIRVVDHQRLSSSGYVFSASLPPYLASAAISAVDHLEENPSVLANLR 376

Query: 375 KNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
            N  +L   LSD+ GL IASN  SPIVFL L+ STGS   DL+LLE I++  LKED VF+
Sbjct: 377 SNITLLHKELSDVQGLEIASNILSPIVFLKLKTSTGSAVADLELLEVISEKVLKEDSVFI 436

Query: 435 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
             +KRS LDKCRLPVGIRLFVSA H+E+D++K  ESLKR++A VL
Sbjct: 437 AATKRSSLDKCRLPVGIRLFVSAGHTESDILKVSESLKRVAASVL 481

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q10P01|LCB1A_ORYSJ Long chain base biosynthesis protein 1a OS=Oryza sativa subsp. japonica GN=Os03g0252800 PE=2 SV=1

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/481 (71%), Positives = 403/481 (83%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MA  I+N    +L RV  A ++P A AVVFGVHI GHL VE LL+ VI+F LS+KSYKPP
Sbjct: 3   MALPIVNATAAVLARVSAAFNAPFARAVVFGVHIDGHLVVEGLLIAVIVFQLSRKSYKPP 62

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           K+PL++KEIDELCDEW PE L PPI +  R + P+LESAA PHT I GKEV+NFASANYL
Sbjct: 63  KKPLSEKEIDELCDEWEPEPLCPPIKDGARIDTPMLESAAAPHTTIDGKEVINFASANYL 122

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIG+EK+++SC  +LEKYGVGSCGPRGFYGTIDVHLDCEA+IAKFLGTPDSILYSYG+S
Sbjct: 123 GLIGNEKIIDSCVGSLEKYGVGSCGPRGFYGTIDVHLDCEAKIAKFLGTPDSILYSYGIS 182

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           T+FS IP FCKKGD+IVADEGVHW +QNGL+LSRSTVVYFKHNDM SL NTLE++T  NK
Sbjct: 183 TIFSVIPAFCKKGDIIVADEGVHWAVQNGLHLSRSTVVYFKHNDMASLANTLEKLTRGNK 242

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           RA+K+RRYIVVE++YQNSGQIAPLDE++RLKEKYRFRV L+ES+SFGVLG+SGRGL EH 
Sbjct: 243 RAEKIRRYIVVESIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGQSGRGLAEHY 302

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVP+DKIDI+TA MG+ALAT+GGFCTGS RVVDHQRLSSSGYVFSASLPPYLASAA++A+
Sbjct: 303 GVPIDKIDIITAGMGNALATDGGFCTGSVRVVDHQRLSSSGYVFSASLPPYLASAAVSAV 362

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
             LE NP ++  L+ N + L   LS   GL I+S+  SPIVFL L+KSTGS   D+ LLE
Sbjct: 363 SYLEGNPSVLADLRSNISFLHKELSGTPGLEISSHVLSPIVFLKLKKSTGSSNTDIDLLE 422

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
            IA+  LKED VF+V SKRS LD+C+LPVGIRLF+SA H+++D+ K   SLKR+SA VL 
Sbjct: 423 TIAERVLKEDSVFIVASKRSPLDRCKLPVGIRLFMSAGHTDSDISKVSSSLKRVSASVLS 482

Query: 481 D 481
           D
Sbjct: 483 D 483

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q7G4P2|LCB1C_ORYSJ Long chain base biosynthesis protein 1c OS=Oryza sativa subsp. japonica GN=Os10g0189600 PE=2 SV=2

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/465 (70%), Positives = 388/465 (83%)

Query: 15  RVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCD 74
           RV    ++P A AVVFG+HI GHL VE LL+  ILF LS+KSYKPPK+PLT++E+DELCD
Sbjct: 18  RVSAVFNAPLARAVVFGIHIDGHLVVEGLLIAAILFQLSRKSYKPPKKPLTEREVDELCD 77

Query: 75  EWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTS 134
           +W PE L PPI E  R + P LESAAGPHT + GKEVVNFASANYLGLIG+EK+++SC  
Sbjct: 78  DWQPEPLCPPIKEGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEKIIDSCVG 137

Query: 135 ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD 194
           ++EKYGVGSCGPR FYGTIDVHLDCE++IA FLGT DSILYSYG+ST+FS IP FCKKGD
Sbjct: 138 SVEKYGVGSCGPRSFYGTIDVHLDCESKIANFLGTQDSILYSYGISTIFSVIPAFCKKGD 197

Query: 195 LIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254
           +IVADEGVHW +QNGL LSRSTVVYFKHNDM SL + LE++T  NK  +K+RRYIVVEA+
Sbjct: 198 IIVADEGVHWAVQNGLQLSRSTVVYFKHNDMASLASILEKLTHGNKHTEKIRRYIVVEAI 257

Query: 255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM 314
           YQNSGQIAPLDE++RLKEKYRFRV L+ES+SFGVLG+SGRGL EH GVPV+KIDI+TA M
Sbjct: 258 YQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGKSGRGLAEHYGVPVEKIDIITAGM 317

Query: 315 GHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLK 374
           G+ALAT+GGFCTGS RVVDHQRLSSSGYVFSASLPPYLASAA++A++ LEENP ++  L+
Sbjct: 318 GNALATDGGFCTGSVRVVDHQRLSSSGYVFSASLPPYLASAAMSAVNHLEENPSVLANLR 377

Query: 375 KNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
            N A+L   LSDI GL IASN  SPIVFL L+  TGS   DL+LLE IA+  L ED VF+
Sbjct: 378 SNIALLHKELSDIPGLEIASNILSPIVFLKLKTPTGSAVADLELLEIIAEKVLMEDSVFI 437

Query: 435 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
             +KRS LDKCRLPVGIRLFVSA H+E+D+ K   SLKR++A V+
Sbjct: 438 AATKRSSLDKCRLPVGIRLFVSAGHTESDIFKVSASLKRVAASVV 482

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB2 constitutes the catalytic core.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O35704|SPTC1_MOUSE Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=2

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/455 (46%), Positives = 298/455 (65%), Gaps = 18/455 (3%)

Query: 37  HLFVEVLLLVVILFLLSQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV 95
           HL +E +L++ I+ L+  K+YK  +R  LT KE +EL +EW PE L+PP+ +      P 
Sbjct: 24  HLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNH----PA 79

Query: 96  LES--AAGPHT---IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           L     +GP T   +++GKE VNFAS N+LGL+ + ++  +  S+L+KYGVG+CGPRGFY
Sbjct: 80  LNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFY 139

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT DVHLD E R+AKF+ T ++I+YSYG ST+ SAIP + K+GD+I  D    + IQ GL
Sbjct: 140 GTFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGL 199

Query: 211 YLSRSTVVYFKHNDMDSLRNTL-ERVTADNK---RAKKLRRYIVVEAVYQNSGQIAPLDE 266
             SRS +  FKHND+  L   L E+   D K   +A+  RR+IVVE +Y N+G I PL E
Sbjct: 200 QASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259

Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
           L++LK KY+ R+FL+ES SFGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC 
Sbjct: 260 LVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCC 319

Query: 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 386
           G + VVDHQRLS  GY FSASLPP LA+AAI A++++EENPD+   LKK    +   L  
Sbjct: 320 GRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQG 379

Query: 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--LDK 444
           + GL +     SP + L LE+STGS + D++LL+ I D  +  D    +T  R +   +K
Sbjct: 380 VSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCM--DKGIALTQARYLDKEEK 437

Query: 445 CRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           C  P  IR+ V+   +E +L +A  +++  +  VL
Sbjct: 438 CLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVL 472

Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates. The SPTLC1-SPTLC2-SPTSSB complex displays a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme has the ability to use a broader range of acyl-CoAs.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O54695|SPTC1_CRIGR Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=1 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/453 (45%), Positives = 293/453 (64%), Gaps = 14/453 (3%)

Query: 37  HLFVEVLLLVVILFLLSQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV 95
           HL +E +L++ I+ L+  K+YK  +R  LT KE +EL +EW PE L+PP+ +      P 
Sbjct: 24  HLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNH----PA 79

Query: 96  LES--AAGPHT---IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           L     +GP T   +++GKE VNFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFY
Sbjct: 80  LNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAALASLKKYGVGTCGPRGFY 139

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT DVHLD E R+AKF+ T ++I+YSYG ST+ SAIP + K+GD++  D    + IQ GL
Sbjct: 140 GTFDVHLDLEERLAKFMRTEEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGL 199

Query: 211 YLSRSTVVYFKHNDMDSLRNTL-ERVTADNK---RAKKLRRYIVVEAVYQNSGQIAPLDE 266
             SRS +  FKHND+  L   L E+   D K   +A+  RR+IVVE +Y N+G + PL E
Sbjct: 200 QASRSDIKLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTVCPLPE 259

Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
           L++LK KY+ R+FL+ES SFGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC 
Sbjct: 260 LVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCC 319

Query: 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 386
           G + VVDHQRLS  GY FSASLPP LA+AAI A++++EENP +   LKK    +   L  
Sbjct: 320 GRSFVVDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKKKCQHIHKSLQG 379

Query: 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 446
           I GL +     SP + L LE+STGS + D+QLL+++    + E             +KC 
Sbjct: 380 ISGLKVVGESLSPALHLQLEESTGSREKDVQLLQEMVIHCMNEGIALTQARYLDKEEKCL 439

Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            P  IR+ V+   +E +L +A  +++  +  VL
Sbjct: 440 PPPSIRVVVTVEQTEEELERAASTIREAAQAVL 472

Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates. The SPTLC1-SPTLC2-SPTSSB complex displays a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme has the ability to use a broader range of acyl-CoAs.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O15269|SPTC1_HUMAN Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/453 (45%), Positives = 294/453 (64%), Gaps = 14/453 (3%)

Query: 37  HLFVEVLLLVVILFLLSQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV 95
           HL +E +L++ I+ LL  K+YK  +R  LT KE +EL +EW PE L+PP+ ++     P 
Sbjct: 24  HLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDH----PA 79

Query: 96  LES--AAGP---HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           L     +GP    T+++GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFY
Sbjct: 80  LNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFY 139

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D    + IQ GL
Sbjct: 140 GTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGL 199

Query: 211 YLSRSTVVYFKHNDMDSLRNTL-ERVTADNK---RAKKLRRYIVVEAVYQNSGQIAPLDE 266
             SRS +  FKHNDM  L   L E+   D K   +A+  RR+IVVE +Y N+G I PL E
Sbjct: 200 QASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259

Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
           L++LK KY+ R+FL+ES SFGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC 
Sbjct: 260 LVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCC 319

Query: 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 386
           G + V+DHQRLS  GY FSASLPP LA+AAI A++++EENP +   LK+    +   L  
Sbjct: 320 GRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQG 379

Query: 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 446
           I GL +     SP   L LE+STGS + D++LL++I D  +               +KC 
Sbjct: 380 ISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCL 439

Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            P  IR+ V+   +E +L +A  ++K ++  VL
Sbjct: 440 PPPSIRVVVTVEQTEEELERAASTIKEVAQAVL 472

Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates, with a slight preference for C14-CoA. The SPTLC1-SPTLC2-SPTSSB complex shows a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme displays an ability to use a broader range of acyl-CoAs, without apparent preference.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q55FL5|SPTC1_DICDI Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/456 (43%), Positives = 294/456 (64%), Gaps = 11/456 (2%)

Query: 35  SGHLFVEVLLLVVILFLLSQKSYKPPKR-PLTKKEIDELCDEWVPESLIPPI--IEEMRC 91
           S +LF+  L+ V I++LL+++ +KP +   LTK E DEL  EW P  L P    +E +  
Sbjct: 23  SPNLFIHGLMAVFIIYLLTKRPFKPRQNDTLTKAEEDELIREWSPIPLTPKSNPLEVLNQ 82

Query: 92  EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
              +++ + G H  I+ K+ +N A +NYLGLI + ++ +   +A+ KYGVGSCGPRGFYG
Sbjct: 83  TELIIQESEGTHVTINNKKYLNLARSNYLGLINNPEINKISENAIRKYGVGSCGPRGFYG 142

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
           TIDVHLD E + A F+ TP+++LYS   +T+ SAIP F K GD+I+ D GV   +Q G+ 
Sbjct: 143 TIDVHLDLEKKTASFMKTPEAVLYSSAYATISSAIPSFSKIGDIIIVDRGVSQPVQVGVS 202

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
           LSRS + YF HNDMD L+  LE+      +AK +R+++V+E +Y NSG IAPL ++++ K
Sbjct: 203 LSRSRIYYFNHNDMDDLQRVLEQTQFKGSKAKIVRKFVVIEGLYYNSGTIAPLPQILKFK 262

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
           E+Y+FR+ +DES+S GVLG +GRGLTEH  +  + +DI+T + G++ ++ GGFC GS  V
Sbjct: 263 EQYKFRLIMDESHSVGVLGSTGRGLTEHYNIDTNLVDILTGSYGNSFSSGGGFCCGSPEV 322

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD---IH 388
           V HQRL+  GYVFSASLPP+LA ++  AI++LEENP ++  L  N   L  GL+    ++
Sbjct: 323 VYHQRLNGVGYVFSASLPPFLACSSTKAIEMLEENPKMLEMLHSNIGELYQGLNKSGALN 382

Query: 389 G-LSIASNPESPIVFLIL--EKSTGSMK-NDLQLLEDIADWALKEDGVFVVTSKRSMLDK 444
           G L I S P SP++ L L   KS  S + ND  LL+ I D A+ + G+ +  +K    +K
Sbjct: 383 GLLEITSLPISPVIHLSLLDSKSNKSNRINDELLLQKIVDKAM-DYGLLLTRAKYVSAEK 441

Query: 445 CRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
                 IR+ VS+  S   + ++ E +K+ ++ VL 
Sbjct: 442 FIPKPSIRISVSSNLSSDQIKQSIEIIKKCTSFVLE 477

Component of serine palmitoyltransferase (SPT), which catalyzes the committed step in the synthesis of sphingolipids, the condensation of serine with palmitoyl CoA to form the long chain base 3-ketosphinganine.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q5R9T5|SPTC1_PONAB Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1

 Score =  370 bits (951), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/449 (45%), Positives = 291/449 (64%), Gaps = 6/449 (1%)

Query: 37  HLFVEVLLLVVILFLLSQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV 95
           HL +E +L++ I+ LL  K+YK  +R  LT KE +EL +EW PE L+P + ++       
Sbjct: 24  HLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPLVPKDHPALNYN 83

Query: 96  LESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTID 154
           + S    H I+ +GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT D
Sbjct: 84  IVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFD 143

Query: 155 VHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSR 214
           VHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D    + IQ GL  SR
Sbjct: 144 VHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASR 203

Query: 215 STVVYFKHNDMDSLRNTL-ERVTADNK---RAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
           S +  FKHNDM  L   L E+   D K   +A+  RR+IVVE +Y N+G I PL EL++L
Sbjct: 204 SDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKL 263

Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 330
           K KY+ R+FL+ES SFGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + 
Sbjct: 264 KYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSF 323

Query: 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL 390
           V+DHQRLS  GY FSASLPP LA+AAI A++++EENP +   LK+    +   L  I GL
Sbjct: 324 VIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQGISGL 383

Query: 391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG 450
            +   P SP   L LE+STGS + D++LL++I D  +               +KC  P  
Sbjct: 384 KVVGEPLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPS 443

Query: 451 IRLFVSAAHSEADLVKACESLKRISAVVL 479
           IR+ V+   +E +L +A  ++K ++  VL
Sbjct: 444 IRVVVTVEQTEEELDRAASTIKEVAQAVL 472

Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates. The SPTLC1-SPTLC2-SPTSSB complex displays a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme has the ability to use a broader range of acyl-CoAs.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q60HD1|SPTC1_MACFA Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/455 (45%), Positives = 298/455 (65%), Gaps = 18/455 (3%)

Query: 37  HLFVEVLLLVVILFLLSQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV 95
           HL +E +L++ I+ LL  K+YK  +R  LT KE +EL +EW PE L+PP+ ++     P 
Sbjct: 24  HLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDH----PA 79

Query: 96  LES--AAGPHT---IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           L     +GP +   +++GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFY
Sbjct: 80  LNYNIVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFY 139

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D    + IQ GL
Sbjct: 140 GTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGL 199

Query: 211 YLSRSTVVYFKHNDMDSLRNTL-ERVTADNK---RAKKLRRYIVVEAVYQNSGQIAPLDE 266
             SRS +  FKHNDM  L   L E+   D K   +A+  RR+IVVE +Y N+G I PL E
Sbjct: 200 QASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPE 259

Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
           L++LK KY+ R+FL+ES SFGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC 
Sbjct: 260 LVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCC 319

Query: 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 386
           G + V+DHQRLS  GY FSASLPP LA+AAI A++++EENP +   LK+    +   L  
Sbjct: 320 GRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQG 379

Query: 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--LDK 444
           I GL +     SP   L LE+STGS + D++LL++I D  +  D    +T  R +   +K
Sbjct: 380 ISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCM--DRSIALTQARYLEKEEK 437

Query: 445 CRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           C  P  IR+ V+   +  +L +A  ++K ++  VL
Sbjct: 438 CLPPPSIRVVVTVEQTAEELERAASTIKEVAQAVL 472

Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates. The SPTLC1-SPTLC2-SPTSSB complex displays a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme has the ability to use a broader range of acyl-CoAs.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
255553971	482	serine palmitoyltransferase I, putative	0.989	0.991	0.849	0.0
296084832	483	unnamed protein product [Vitis vinifera]	0.991	0.991	0.822	0.0
359480909	480	PREDICTED: serine palmitoyltransferase 1	0.979	0.985	0.828	0.0
224120344	482	predicted protein [Populus trichocarpa]	0.991	0.993	0.843	0.0
224125774	482	predicted protein [Populus trichocarpa]	0.991	0.993	0.847	0.0
356564170	483	PREDICTED: serine palmitoyltransferase 1	1.0	1.0	0.815	0.0
356552222	483	PREDICTED: serine palmitoyltransferase 1	1.0	1.0	0.815	0.0
449450243	483	PREDICTED: long chain base biosynthesis	0.997	0.997	0.819	0.0
197311350	482	serine palmitoyltransferase long chain b	0.991	0.993	0.774	0.0
297798256	482	ATLCB1 [Arabidopsis lyrata subsp. lyrata	0.991	0.993	0.774	0.0

>gi|255553971|ref|XP_002518026.1| serine palmitoyltransferase I, putative [Ricinus communis] gi|223543008|gb|EEF44544.1| serine palmitoyltransferase I, putative [Ricinus communis]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/478 (84%), Positives = 445/478 (93%)

Query: 4   FILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRP 63
           F+  FVNT ++ VK+ALD+PSA AVVFGVHI GHLFVE LLLVVILFLLSQKSYKPPKRP
Sbjct: 5   FLSQFVNTTIDWVKVALDAPSARAVVFGVHIGGHLFVEGLLLVVILFLLSQKSYKPPKRP 64

Query: 64  LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLI 123
           LT KEIDELC++WVPE LIPPI +EM+ EP VLESAAGPH II+ KEVVNFASANYLGLI
Sbjct: 65  LTNKEIDELCEDWVPEPLIPPITQEMQYEPAVLESAAGPHAIINSKEVVNFASANYLGLI 124

Query: 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMF 183
           GH+KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMF
Sbjct: 125 GHDKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMF 184

Query: 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAK 243
           SAIPCFCKKGD+IV DEGVHWGIQNGLYLSRST+VYFKHNDM+SL+NTLE++TA+ KRAK
Sbjct: 185 SAIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLQNTLEKITAEKKRAK 244

Query: 244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP 303
           +LRRYIVVEAVYQNSGQIAPL+E+I+LKEKYRFRV LDESNSFGVLGR GRGLTE+ GVP
Sbjct: 245 QLRRYIVVEAVYQNSGQIAPLNEIIKLKEKYRFRVLLDESNSFGVLGRFGRGLTEYYGVP 304

Query: 304 VDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 363
           V+KIDI+TAAMGHALATEGGFCTGSARV+DHQRLSSSGYVFSASLPPYLASAAITAIDVL
Sbjct: 305 VEKIDIITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAIDVL 364

Query: 364 EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIA 423
           E+NP LITKLK+N A+L  GL +I GLSIASNPESPIVFL LE +TGS+K DL+LLEDIA
Sbjct: 365 EDNPALITKLKENIAVLWKGLCNIQGLSIASNPESPIVFLRLENTTGSVKGDLKLLEDIA 424

Query: 424 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481
           D ALKED VFVV SKRS LDKCRLPV I+L+VSAAHSEADL+KACESLKR+SA+VLR+
Sbjct: 425 DRALKEDSVFVVVSKRSTLDKCRLPVAIKLYVSAAHSEADLIKACESLKRVSALVLRN 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084832|emb|CBI27714.3| unnamed protein product [Vitis vinifera]

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/479 (82%), Positives = 432/479 (90%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS + + V T ++ V LA ++P   AVVFGV I GHLFVEV+LL+ I+FLLSQKSYKPP
Sbjct: 1   MASAVTDIVTTAVDWVTLAFNAPLPRAVVFGVQIGGHLFVEVVLLLAIIFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLTKKEIDELC+EWVPESLIPP+ EEM+ EPPVLESAAGPHT+I+GKEVVNF SANYL
Sbjct: 61  KRPLTKKEIDELCEEWVPESLIPPLTEEMQFEPPVLESAAGPHTVINGKEVVNFTSANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIGHEKLLESCT+ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS
Sbjct: 121 GLIGHEKLLESCTAALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFSAIP FCK+GD+IV DEGVHWGIQNGLYLSRST+VYFKHNDM+SL+NTLE++T +NK
Sbjct: 181 TMFSAIPAFCKRGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLQNTLEKITLENK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           RAKKLRRYIVVEAVYQNSGQIAPLDE+IRLKEKYRFRV LDESNSFGVLG +GRGLTE  
Sbjct: 241 RAKKLRRYIVVEAVYQNSGQIAPLDEIIRLKEKYRFRVLLDESNSFGVLGSTGRGLTEFF 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
            VP++KIDI+TAAMGHALATEGGFCTGS RV+DHQRLSSSGYVFSASLPPYLASAAITA+
Sbjct: 301 RVPIEKIDIITAAMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAV 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DVLEENPDLI KLK+N A+L   LSDI GLSIASNP SPIVFL LE STGS+KNDL LLE
Sbjct: 361 DVLEENPDLIMKLKENIAVLWQELSDIQGLSIASNPLSPIVFLRLENSTGSLKNDLHLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           DI D  L +D VFVV SKRS LDKCRLPVGIRL VSAAH+E+DL+KA ESLKR +A VL
Sbjct: 421 DIVDRMLNKDSVFVVASKRSTLDKCRLPVGIRLLVSAAHTESDLLKASESLKRAAASVL 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480909|ref|XP_002269418.2| PREDICTED: serine palmitoyltransferase 1 [Vitis vinifera]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/473 (82%), Positives = 428/473 (90%)

Query: 7   NFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTK 66
           N V T ++ V LA ++P   AVVFGV I GHLFVEV+LL+ I+FLLSQKSYKPPKRPLTK
Sbjct: 4   NIVTTAVDWVTLAFNAPLPRAVVFGVQIGGHLFVEVVLLLAIIFLLSQKSYKPPKRPLTK 63

Query: 67  KEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHE 126
           KEIDELC+EWVPESLIPP+ EEM+ EPPVLESAAGPHT+I+GKEVVNF SANYLGLIGHE
Sbjct: 64  KEIDELCEEWVPESLIPPLTEEMQFEPPVLESAAGPHTVINGKEVVNFTSANYLGLIGHE 123

Query: 127 KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186
           KLLESCT+ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI
Sbjct: 124 KLLESCTAALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 183

Query: 187 PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLR 246
           P FCK+GD+IV DEGVHWGIQNGLYLSRST+VYFKHNDM+SL+NTLE++T +NKRAKKLR
Sbjct: 184 PAFCKRGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLQNTLEKITLENKRAKKLR 243

Query: 247 RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK 306
           RYIVVEAVYQNSGQIAPLDE+IRLKEKYRFRV LDESNSFGVLG +GRGLTE   VP++K
Sbjct: 244 RYIVVEAVYQNSGQIAPLDEIIRLKEKYRFRVLLDESNSFGVLGSTGRGLTEFFRVPIEK 303

Query: 307 IDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN 366
           IDI+TAAMGHALATEGGFCTGS RV+DHQRLSSSGYVFSASLPPYLASAAITA+DVLEEN
Sbjct: 304 IDIITAAMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAVDVLEEN 363

Query: 367 PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA 426
           PDLI KLK+N A+L   LSDI GLSIASNP SPIVFL LE STGS+KNDL LLEDI D  
Sbjct: 364 PDLIMKLKENIAVLWQELSDIQGLSIASNPLSPIVFLRLENSTGSLKNDLHLLEDIVDRM 423

Query: 427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           L +D VFVV SKRS LDKCRLPVGIRL VSAAH+E+DL+KA ESLKR +A VL
Sbjct: 424 LNKDSVFVVASKRSTLDKCRLPVGIRLLVSAAHTESDLLKASESLKRAAASVL 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120344|ref|XP_002318306.1| predicted protein [Populus trichocarpa] gi|222858979|gb|EEE96526.1| predicted protein [Populus trichocarpa]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/479 (84%), Positives = 443/479 (92%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS +L  +++ L RV  ALD PSA AVVFGVHI GHLFVEVLLLVVILFLLSQKSYK P
Sbjct: 1   MASNVLQLLDSTLERVTSALDFPSARAVVFGVHIGGHLFVEVLLLVVILFLLSQKSYKHP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLTKKEIDELCDEWVPESLIPPI +EMR EPPVLESAAGPHTII+GK+VVNFASANYL
Sbjct: 61  KRPLTKKEIDELCDEWVPESLIPPITDEMRYEPPVLESAAGPHTIINGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GL GHEK ++S TSA+EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSI+YSYGLS
Sbjct: 121 GLTGHEKQIDSSTSAMEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIIYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFS IPCFCKKGD+IV DEGVHWGIQNGLYLSRST+VYFKHNDM+SLRN LE++T +NK
Sbjct: 181 TMFSTIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNALEKITVENK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           RAK+LRRYIVVEAVYQNSGQIAPL+E+IRLKEKY FRV LDESNSFGVLGRSGRGLTE+ 
Sbjct: 241 RAKELRRYIVVEAVYQNSGQIAPLNEIIRLKEKYLFRVLLDESNSFGVLGRSGRGLTEYH 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVP++KIDIVTA MGHALATEGGFCTGS+RVVDHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKIDIVTADMGHALATEGGFCTGSSRVVDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DVLE+NP LI KLK+N AIL  GLS+I GLSI+SNP+SPIVFL LEKSTGS K+DL+LLE
Sbjct: 361 DVLEDNPALIEKLKENIAILWKGLSNIQGLSISSNPKSPIVFLNLEKSTGSTKDDLKLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            +AD ALKED VFVVT+KRS LDKCRLPVGIRLFVSAAHS++DL+KACESLKR++A+VL
Sbjct: 421 AMADRALKEDSVFVVTTKRSTLDKCRLPVGIRLFVSAAHSDSDLLKACESLKRVAALVL 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125774|ref|XP_002329714.1| predicted protein [Populus trichocarpa] gi|222870622|gb|EEF07753.1| predicted protein [Populus trichocarpa]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/479 (84%), Positives = 435/479 (90%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS +L  VN  L RV  ALD PSA AVVFGV I GHLFVEVLLLVVILFLLSQKSYK P
Sbjct: 1   MASNVLQLVNGTLERVTSALDFPSARAVVFGVQIGGHLFVEVLLLVVILFLLSQKSYKHP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLTKKEIDELCDEW+PESLIP I EEMR EPP LESAAGPH II+GK+VVNFASANYL
Sbjct: 61  KRPLTKKEIDELCDEWIPESLIPRITEEMRYEPPALESAAGPHAIINGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GL  HEKLLES TSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT DSILYSYGLS
Sbjct: 121 GLTAHEKLLESSTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTSDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFS IPCFCKKGD+IV DEGVHWGIQNGLYLSRST+VYFKHNDM+SLRNTLE++TA NK
Sbjct: 181 TMFSTIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKITAGNK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           RAK+LRRYIVVEAVYQNSGQIAPL+E+IRLKEKY FRV LDESNSFGVLGR GRGLTE+ 
Sbjct: 241 RAKELRRYIVVEAVYQNSGQIAPLNEIIRLKEKYLFRVLLDESNSFGVLGRFGRGLTEYH 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVP++K+DIVTAAMGHALATEGGFCTGS+RV+DHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKVDIVTAAMGHALATEGGFCTGSSRVIDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           +VLE+NP LITKLK+N ++L  GLS I GLSIASNPESPIVFL LE STGSMK+DLQLLE
Sbjct: 361 NVLEDNPALITKLKENISVLWKGLSSIQGLSIASNPESPIVFLKLEMSTGSMKDDLQLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            IAD ALKED VF VTSKRS +DKCRLPVGIRLFVSAAHS++DL+KA ESLKR+SA VL
Sbjct: 421 AIADRALKEDSVFFVTSKRSTIDKCRLPVGIRLFVSAAHSDSDLLKASESLKRVSASVL 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564170|ref|XP_003550329.1| PREDICTED: serine palmitoyltransferase 1-like [Glycine max]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/483 (81%), Positives = 432/483 (89%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS ++NF+N  L+ V  A D PSA AVVFGVHI GHLF+EV LLVVILFLLSQKSYKPP
Sbjct: 1   MASAVVNFLNATLDWVTFASDGPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT KEIDELCDEWVPE LIP + +E++ EPPVLESAAGPHTII+GKEVVNFASANYL
Sbjct: 61  KRPLTNKEIDELCDEWVPEPLIPSLNKELQYEPPVLESAAGPHTIINGKEVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           G IGH KLL+SC+SAL KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP+SILYSYGLS
Sbjct: 121 GFIGHPKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFSAIP F KKGD+IVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLR TLE +TA  K
Sbjct: 181 TMFSAIPAFSKKGDVIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRETLENITAKYK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           +AK LRRYIV+EAVYQNSG+IAPLDE+I+LKEKYRFRV LDESNS GVLG SGRGLTE+C
Sbjct: 241 KAKNLRRYIVIEAVYQNSGEIAPLDEIIKLKEKYRFRVLLDESNSLGVLGSSGRGLTEYC 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVPV+KIDI+TA+MGHALATEGGFCTGS RV+DHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPVEKIDIITASMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DVLEENP+LI KLKKN A LR GLS I G++I SNPESPIV+L LEKS GSMK+DL LLE
Sbjct: 361 DVLEENPNLIKKLKKNIAFLRKGLSKIPGITITSNPESPIVYLRLEKSRGSMKDDLHLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
           +IA+  LKE+ VFVV SKRS LDKCRLPVGIRLFVSA HSE+DL+KA ESLK++ A VL 
Sbjct: 421 NIAERVLKEESVFVVVSKRSTLDKCRLPVGIRLFVSAGHSESDLLKASESLKKVVASVLG 480

Query: 481 DRN 483
            +N
Sbjct: 481 GQN 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552222|ref|XP_003544468.1| PREDICTED: serine palmitoyltransferase 1-like [Glycine max]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/483 (81%), Positives = 430/483 (89%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS ++NF+N  L+ +  A D PSA AVVFGVHI GHLF+EV LLVVILFLLSQKSYKPP
Sbjct: 1   MASAVVNFLNATLDWMTFASDGPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT KEIDELCDEWVPE LIP + +E++ EPPVLESAAGPHTII+GKEVVNFASANYL
Sbjct: 61  KRPLTNKEIDELCDEWVPEPLIPSVNKELQYEPPVLESAAGPHTIINGKEVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           G IGH KLL+SC+SAL KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP+SILYSYGLS
Sbjct: 121 GFIGHPKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFSAIP F KKGD+IVADEGVHWGIQNGLYLSRSTVVYFKHNDMD+LR TLE +T+  K
Sbjct: 181 TMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDALRETLENITSKYK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           + K LRRYIVVEAVYQNSGQIAPLDE+I+LKEKYRFRV LDESNS GVLG SGRGLTEHC
Sbjct: 241 KTKNLRRYIVVEAVYQNSGQIAPLDEIIKLKEKYRFRVLLDESNSLGVLGSSGRGLTEHC 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVPV+KIDI+TAAMGHALATEGGFCTGS RV+DHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPVEKIDIITAAMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DVLEENP+LI KLKKN A LR GLS I G++IASNPESPIV+L LEKS GS+K+DL LLE
Sbjct: 361 DVLEENPNLIKKLKKNIAFLRKGLSKIPGITIASNPESPIVYLRLEKSRGSVKDDLHLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
           +IA+  L E+ VFVV SKRS LDKCRLPVGIRLFVSA HSE+DL+KA ESLKR+ A VL 
Sbjct: 421 NIAERVLNEESVFVVVSKRSTLDKCRLPVGIRLFVSAGHSESDLLKASESLKRVVASVLG 480

Query: 481 DRN 483
             N
Sbjct: 481 GHN 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450243|ref|XP_004142873.1| PREDICTED: long chain base biosynthesis protein 1-like [Cucumis sativus]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/482 (81%), Positives = 435/482 (90%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           M +   N V + ++ V L LD+PSA AV+FGVHI GHLFVEVLLLVVI+FLLSQKSYKPP
Sbjct: 1   MKTMFSNIVKSTVDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLTKKEIDELCDEWVPE LIP I EEM  EPPVLES+AGP+TII+GKEVVNFASANYL
Sbjct: 61  KRPLTKKEIDELCDEWVPEPLIPSITEEMESEPPVLESSAGPNTIINGKEVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIGH KLLESCT+ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS
Sbjct: 121 GLIGHTKLLESCTNALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFSAIP FCK+GD+IVADEGVHWGIQNGLYLSRST+VYFKHNDM SLR+TLE+ TA N+
Sbjct: 181 TMFSAIPAFCKRGDVIVADEGVHWGIQNGLYLSRSTIVYFKHNDMKSLRDTLEKTTAGNE 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           RAKKLRRYIVVEAVYQNSG+IAPLDE+I+LKE+YRFRV LDESNSFGVLG +GRGLTEHC
Sbjct: 241 RAKKLRRYIVVEAVYQNSGKIAPLDEIIKLKEQYRFRVLLDESNSFGVLGCTGRGLTEHC 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GV VDKIDIVTAAMGHALATEGGFCTGSARV+DHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVSVDKIDIVTAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           D++EENP L+TKLKKN AIL  GL  I GL + S+ ESPIVFL+L+KSTGS++NDLQLLE
Sbjct: 361 DLIEENPMLLTKLKKNIAILWQGLLGIPGLKLVSDQESPIVFLVLDKSTGSLQNDLQLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
            IA+ AL E  VFVVTSKRS LDKCRLPVGIRL VS  HSE+DL+KA +SL+ ++AVVL+
Sbjct: 421 KIAELALNEHSVFVVTSKRSTLDKCRLPVGIRLMVSTGHSESDLLKATKSLRSVAAVVLK 480

Query: 481 DR 482
           D 
Sbjct: 481 DH 482

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197311350|gb|ACH61906.1| serine palmitoyltransferase long chain base subunit [Brassica rapa subsp. chinensis] gi|197311352|gb|ACH61907.1| serine palmitoyltransferase long chain base subunit [Brassica rapa subsp. chinensis]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/479 (77%), Positives = 425/479 (88%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS ++      LN V +ALD+PSA  V+FGV I GH+FVEVLL  VI+ LLSQKSYKPP
Sbjct: 1   MASNLVEMFRAGLNWVTMALDAPSARVVLFGVRIQGHIFVEVLLGFVIVILLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT++EIDELCDEWVPE LIPPI E+M  EPPVLESAAGPHT ++GK+VVNFASANYL
Sbjct: 61  KRPLTEQEIDELCDEWVPEPLIPPITEDMMHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIGH+KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFL TPD+ILYSYGLS
Sbjct: 121 GLIGHQKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLSTPDTILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFS IPCFCKKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDMDSLR+TLE++   NK
Sbjct: 181 TMFSTIPCFCKKGDIIVADEGVHWGIQNGLQLSRSTIVYFKHNDMDSLRSTLEKIMTKNK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           R+K LRRYIV EAVYQNSGQIAPLDE+++LKEKY+FRV LDESNSFGVLGRSGRGL EH 
Sbjct: 241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYKFRVILDESNSFGVLGRSGRGLAEHH 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVP++KID+VTAAMGHALATEGGFCTG+AR++D+QRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DV+++NP+L+ K+K N A+L  GL DI G+S+AS+PESPIVFL LEKS+GS K DL LLE
Sbjct: 361 DVIDQNPELLVKMKHNIALLWKGLKDIKGMSLASDPESPIVFLKLEKSSGSTKEDLLLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
            +AD ALKED + VV+SK+S LDKCRLPVGI+L VSA HSE+DLVK  ESLKR+++ +L
Sbjct: 421 KMADRALKEDSLLVVSSKKSFLDKCRLPVGIKLLVSAGHSESDLVKVSESLKRLASELL 479

Source: Brassica rapa subsp. chinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798256|ref|XP_002867012.1| ATLCB1 [Arabidopsis lyrata subsp. lyrata] gi|297312848|gb|EFH43271.1| ATLCB1 [Arabidopsis lyrata subsp. lyrata]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/479 (77%), Positives = 427/479 (89%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MAS ++   N  LN V + L+SPSA  V+FG  I GH FVE LL VVI+ LL++KSYKPP
Sbjct: 1   MASNLVEMFNATLNWVTMMLESPSARVVLFGFPIRGHFFVEGLLGVVIVILLTRKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT++EIDELCDEWVPE LIPPI E+M+ EPPVLESAAGPHT ++GK+VVNFASANYL
Sbjct: 61  KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFLGTPDSILYSYGLS
Sbjct: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           TMFS IPCFCKKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDM+SLR+TLE++    K
Sbjct: 181 TMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRSTLEKIMTKYK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           R+K LRRYIV EAVYQNSGQIAPLDE+++LKEKYRFRV LDESNSFGVLGRSGRGL EH 
Sbjct: 241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHH 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
            VP++KID+VTAAMGHALATEGGFCTG+AR++D+QRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 SVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DV+++NPD++ KLK+N A+L  GLSDI G+S+ SN ESPIVFL LEKS+GS K+DL LLE
Sbjct: 361 DVIDQNPDMLVKLKQNIALLWKGLSDIKGMSLTSNRESPIVFLKLEKSSGSAKDDLLLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           ++AD ALKED + VV+SKRS LDKCRLPVGI+L+VSA HSE+DL+KA ESLKR+++ +L
Sbjct: 421 EMADRALKEDSLLVVSSKRSFLDKCRLPVGIKLYVSAGHSESDLLKASESLKRLASELL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
TAIR|locus:2115350	482	LCB1 "long-chain base1" [Arabi	0.991	0.993	0.730	6.9e-189
MGI|MGI:1099431	473	Sptlc1 "serine palmitoyltransf	0.869	0.887	0.447	3.8e-94
UNIPROTKB|O15269	473	SPTLC1 "Serine palmitoyltransf	0.879	0.898	0.433	2.7e-93
UNIPROTKB|O54695	473	SPTLC1 "Serine palmitoyltransf	0.869	0.887	0.440	4.3e-93
UNIPROTKB|E1BQI0	477	SPTLC1 "Uncharacterized protei	0.869	0.880	0.441	7e-93
RGD|1307140	473	Sptlc1 "serine palmitoyltransf	0.869	0.887	0.435	1.9e-92
UNIPROTKB|Q5R9T5	473	SPTLC1 "Serine palmitoyltransf	0.879	0.898	0.433	2.4e-92
UNIPROTKB|Q60HD1	473	SPTLC1 "Serine palmitoyltransf	0.875	0.894	0.436	3e-92
UNIPROTKB|F1RN05	461	SPTLC1 "Uncharacterized protei	0.877	0.919	0.428	2.7e-91
UNIPROTKB|Q3MHG1	473	SPTLC1 "Serine palmitoyltransf	0.875	0.894	0.427	5.7e-91

TAIR|locus:2115350 LCB1 "long-chain base1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1831 (649.6 bits), Expect = 6.9e-189, P = 6.9e-189
 Identities = 350/479 (73%), Positives = 403/479 (84%)

Query:     1 MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHXXXXXXXXXXXXXXXSQKSYKPP 60
             MAS ++   N  LN V + L+SPSA  V+FGV I GH               ++KSYKPP
Sbjct:     1 MASNLVEMFNAALNWVTMILESPSARVVLFGVPIRGHFFVEGLLGVVIIILLTRKSYKPP 60

Query:    61 KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
             KRPLT++EIDELCDEWVPE LIPPI E+M+ EPPVLESAAGPHT ++GK+VVNFASANYL
Sbjct:    61 KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL 120

Query:   121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
             GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE RI+KFLGTPDSILYSYGLS
Sbjct:   121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLS 180

Query:   181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
             TMFS IPCFCKKGD+IVADEGVHWGIQNGL LSRST+VYFKHNDM+SLR TLE++    K
Sbjct:   181 TMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITLEKIMTKYK 240

Query:   241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
             R+K LRRYIV EAVYQNSGQIAPLDE+++LKEKYRFRV LDESNSFGVLGRSGRGL EH 
Sbjct:   241 RSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHH 300

Query:   301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAI 360
              VP++KID+VTAAMGHALATEGGFCTG+AR++D+QRLSSSGYVF            ITAI
Sbjct:   301 SVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLASAAITAI 360

Query:   361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
             DV+++NPD++ KLK+N A+L  GLSDI G+S+ SN ESPIVFL LEKS+GS K+DL LLE
Sbjct:   361 DVIDQNPDMLVKLKQNVALLWKGLSDIKGMSLTSNRESPIVFLKLEKSSGSAKDDLLLLE 420

Query:   421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
              +AD ALKED + VV+SKRS LDKCRLPVGI+L+VSA HSE+DL+KA ESLKR+++ +L
Sbjct:   421 KMADRALKEDSLLVVSSKRSFLDKCRLPVGIKLYVSAGHSESDLLKASESLKRLASELL 479

GO:0003824 "catalytic activity" evidence=IEA

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IGI;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=ISS;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016049 "cell growth" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=RCA

MGI|MGI:1099431 Sptlc1 "serine palmitoyltransferase, long chain base subunit 1" [Mus musculus (taxid:10090)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 195/436 (44%), Positives = 276/436 (63%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV-LESAAGPHT---IISGK 109
             K+YK  +R  LT KE +EL +EW PE L+PP+ +     P +     +GP T   +++GK
Sbjct:    42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKN---HPALNYNIVSGPPTHNIVVNGK 98

Query:   110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169
             E VNFAS N+LGL+ + ++  +  S+L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T
Sbjct:    99 ECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKT 158

Query:   170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLR 229
              ++I+YSYG ST+ SAIP + K+GD+I  D    + IQ GL  SRS +  FKHND+  L 
Sbjct:   159 EEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLE 218

Query:   230 NTL-ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS 285
               L E+   D K  +K R   R+IVVE +Y N+G I PL EL++LK KY+ R+FL+ES S
Sbjct:   219 RLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLS 278

Query:   286 FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFX 345
             FGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + VVDHQRLS  GY F 
Sbjct:   279 FGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFS 338

Query:   346 XXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405
                        I A++++EENPD+   LKK    +   L  + GL +     SP + L L
Sbjct:   339 ASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQL 398

Query:   406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLFVSAAHSEAD 463
             E+STGS + D++LL+ I D  + + G+  +T  R +   +KC  P  IR+ V+   +E +
Sbjct:   399 EESTGSREKDVKLLQAIVDQCM-DKGI-ALTQARYLDKEEKCLPPPSIRVVVTVEQTEEE 456

Query:   464 LVKACESLKRISAVVL 479
             L +A  +++  +  VL
Sbjct:   457 LQRAASTIREAAQAVL 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006665 "sphingolipid metabolic process" evidence=IEA

GO:0006686 "sphingomyelin biosynthetic process" evidence=ISA;IMP

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISO;ISA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035339 "SPOTS complex" evidence=ISO

GO:0046511 "sphinganine biosynthetic process" evidence=IMP

GO:0046512 "sphingosine biosynthetic process" evidence=IMP

GO:0046513 "ceramide biosynthetic process" evidence=IMP

UNIPROTKB|O15269 SPTLC1 "Serine palmitoyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 187/431 (43%), Positives = 268/431 (62%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPH-TIISGKEVV 112
             K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H T+++GKE +
Sbjct:    42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECI 101

Query:   113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
             NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++
Sbjct:   102 NFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEA 161

Query:   173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL 232
             I+YSYG +T+ SAIP + K+GD++  D    + IQ GL  SRS +  FKHNDM  L   L
Sbjct:   162 IIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLL 221

Query:   233 -ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              E+   D K  +K R   R+IVVE +Y N+G I PL EL++LK KY+ R+FL+ES SFGV
Sbjct:   222 KEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGV 281

Query:   289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 348
             LG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F    
Sbjct:   282 LGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASL 341

Query:   349 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                     I A++++EENP +   LK+    +   L  I GL +     SP   L LE+S
Sbjct:   342 PPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEES 401

Query:   409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 468
             TGS + D++LL++I D  +               +KC  P  IR+ V+   +E +L +A 
Sbjct:   402 TGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAA 461

Query:   469 ESLKRISAVVL 479
              ++K ++  VL
Sbjct:   462 STIKEVAQAVL 472

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006686 "sphingomyelin biosynthetic process" evidence=IEA

GO:0046511 "sphinganine biosynthetic process" evidence=IEA

GO:0046512 "sphingosine biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IDA

GO:0030148 "sphingolipid biosynthetic process" evidence=TAS

GO:0017059 "serine C-palmitoyltransferase complex" evidence=IDA

GO:0035339 "SPOTS complex" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006665 "sphingolipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|O54695 SPTLC1 "Serine palmitoyltransferase 1" [Cricetulus griseus (taxid:10029)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 192/436 (44%), Positives = 275/436 (63%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV-LESAAGPHT---IISGK 109
             K+YK  +R  LT KE +EL +EW PE L+PP+ +     P +     +GP T   +++GK
Sbjct:    42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKN---HPALNYNIVSGPPTHNIVVNGK 98

Query:   110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169
             E VNFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T
Sbjct:    99 ECVNFASFNFLGLLANPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMRT 158

Query:   170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLR 229
              ++I+YSYG ST+ SAIP + K+GD++  D    + IQ GL  SRS +  FKHND+  L 
Sbjct:   159 EEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGLQASRSDIKLFKHNDVADLE 218

Query:   230 NTL-ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS 285
               L E+   D K  +K R   R+IVVE +Y N+G + PL EL++LK KY+ R+FL+ES S
Sbjct:   219 RLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTVCPLPELVKLKYKYKARIFLEESLS 278

Query:   286 FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFX 345
             FGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + VVDHQRLS  GY F 
Sbjct:   279 FGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFS 338

Query:   346 XXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405
                        I A++++EENP +   LKK    +   L  I GL +     SP + L L
Sbjct:   339 ASLPPLLAAAAIEALNIMEENPGIFAVLKKKCQHIHKSLQGISGLKVVGESLSPALHLQL 398

Query:   406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLFVSAAHSEAD 463
             E+STGS + D+QLL+++    + E G+  +T  R +   +KC  P  IR+ V+   +E +
Sbjct:   399 EESTGSREKDVQLLQEMVIHCMNE-GI-ALTQARYLDKEEKCLPPPSIRVVVTVEQTEEE 456

Query:   464 LVKACESLKRISAVVL 479
             L +A  +++  +  VL
Sbjct:   457 LERAASTIREAAQAVL 472

GO:0006686 "sphingomyelin biosynthetic process" evidence=IDA

GO:0017059 "serine C-palmitoyltransferase complex" evidence=IDA

GO:0035339 "SPOTS complex" evidence=ISS

UNIPROTKB|E1BQI0 SPTLC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 193/437 (44%), Positives = 277/437 (63%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV-LESAAGPHT---IISGK 109
             K+YK  +R  LT KE +EL +EW PE L+PP+ ++    P +     +GP T   I++GK
Sbjct:    45 KTYKLQERSDLTPKEKEELIEEWQPEPLVPPVSKD---HPALNYNIVSGPPTHKIIVNGK 101

Query:   110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169
             E VNFAS N+LGL+ +EK+  +  ++L+KYGVG+CGPRGFYGT DVHL+ E R+AKF+ T
Sbjct:   102 ECVNFASFNFLGLLDNEKVKSAAQASLKKYGVGTCGPRGFYGTFDVHLELEDRLAKFMRT 161

Query:   170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLR 229
              ++I+YSYG +T+ SAIP + K+GD++  DE   + IQ GL  SRS +  FKHNDM  L 
Sbjct:   162 EEAIIYSYGFATIASAIPAYSKRGDIVFVDEAACFAIQKGLQASRSNIKLFKHNDMTDLE 221

Query:   230 NTL-ERVTADNKR----AKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
               L E+ T D K+    A+  RR+IVVE +Y N+G I PL ELI+LK KY+ R+FL+ES 
Sbjct:   222 RLLKEQETEDQKKNPRKARVTRRFIVVEGLYMNTGDICPLPELIKLKYKYKVRIFLEESL 281

Query:   285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
             SFGVLG  GRG+TEH G+ +D ID+++A M ++LA+ GGFC G + ++DHQRLS  GY F
Sbjct:   282 SFGVLGEHGRGITEHFGINIDDIDLISANMENSLASIGGFCCGRSFIIDHQRLSGQGYCF 341

Query:   345 XXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404
                         I A++++E+NP++   L+     +   L  I GL +     SP + L 
Sbjct:   342 SASLPPLLAAAAIEALNIMEDNPEIFQTLRAKCERIHRALQGISGLRVVGESFSPALHLR 401

Query:   405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML--DKCRLPVGIRLFVSAAHSEA 462
             LE S GS +ND++LL+ I D+ +   G+  +T  R +   +KC     IR+ V+   +E 
Sbjct:   402 LEDSYGSRENDVKLLKRIVDYCINS-GI-ALTQARYLEKEEKCLPSPSIRVVVTVEQTEQ 459

Query:   463 DLVKACESLKRISAVVL 479
             +L KA   +K  +  VL
Sbjct:   460 ELDKAASLIKEAAKSVL 476

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA

GO:0006686 "sphingomyelin biosynthetic process" evidence=IEA

GO:0035339 "SPOTS complex" evidence=IEA

GO:0046511 "sphinganine biosynthetic process" evidence=IEA

GO:0046512 "sphingosine biosynthetic process" evidence=IEA

RGD|1307140 Sptlc1 "serine palmitoyltransferase, long chain base subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 190/436 (43%), Positives = 274/436 (62%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPV-LESAAGPHT---IISGK 109
             K+YK  +R  LT KE +EL +EW PE L+PP+    R  P +     +GP T   +++GK
Sbjct:    42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPV---SRNHPALNYNIVSGPPTHNIVVNGK 98

Query:   110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169
             E VNFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T
Sbjct:    99 ECVNFASFNFLGLLANPRVKAAAFASLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKT 158

Query:   170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLR 229
              ++I+YSYG ST+ SAIP + K+GD++  D    + IQ GL  SRS +  FKHND+  L 
Sbjct:   159 EEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGLQASRSDIKLFKHNDVADLE 218

Query:   230 NTL-ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS 285
               L E+   D K  +K R   R+IV E +Y N+G I PL EL+RLK KY+ R+FL+ES S
Sbjct:   219 RLLKEQEIEDQKNPRKARVTRRFIVAEGLYMNTGTICPLPELVRLKYKYKARIFLEESLS 278

Query:   286 FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFX 345
             FGVLG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + VVDHQRLS  GY F 
Sbjct:   279 FGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFS 338

Query:   346 XXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405
                        I A++++EENP +   LKK    +   L  + GL +      P + L L
Sbjct:   339 ASLPPLLAAAAIEALNIMEENPGIFAVLKKKCQTIHKSLQGVSGLKVVGESLCPALHLQL 398

Query:   406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLFVSAAHSEAD 463
             E+STGS + D++LL++I +  + + G+  +T  R +   +KC  P  IR+ V+   ++ +
Sbjct:   399 EESTGSRERDMKLLQEIVEQCMNK-GI-ALTQARYLDKEEKCLPPPSIRVVVTVEQTDEE 456

Query:   464 LVKACESLKRISAVVL 479
             L +A  +++  +  VL
Sbjct:   457 LQRAAATIREAAQAVL 472

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA;ISO

GO:0006686 "sphingomyelin biosynthetic process" evidence=IEA;ISO

GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035339 "SPOTS complex" evidence=IEA;ISO

GO:0046511 "sphinganine biosynthetic process" evidence=IEA;ISO

GO:0046512 "sphingosine biosynthetic process" evidence=IEA;ISO

GO:0046513 "ceramide biosynthetic process" evidence=ISO

UNIPROTKB|Q5R9T5 SPTLC1 "Serine palmitoyltransferase 1" [Pongo abelii (taxid:9601)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 187/431 (43%), Positives = 267/431 (61%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTII-SGKEVV 112
             K+YK  +R  LT KE +EL +EW PE L+P + ++       + S    H I+ +GKE +
Sbjct:    42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPLVPKDHPALNYNIVSGPPSHKIVVNGKECI 101

Query:   113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
             NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++
Sbjct:   102 NFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEA 161

Query:   173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL 232
             I+YSYG +T+ SAIP + K+GD++  D    + IQ GL  SRS +  FKHNDM  L   L
Sbjct:   162 IIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLL 221

Query:   233 -ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              E+   D K  +K R   R+IVVE +Y N+G I PL EL++LK KY+ R+FL+ES SFGV
Sbjct:   222 KEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGV 281

Query:   289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 348
             LG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F    
Sbjct:   282 LGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASL 341

Query:   349 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                     I A++++EENP +   LK+    +   L  I GL +   P SP   L LE+S
Sbjct:   342 PPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQGISGLKVVGEPLSPAFHLQLEES 401

Query:   409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 468
             TGS + D++LL++I D  +               +KC  P  IR+ V+   +E +L +A 
Sbjct:   402 TGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELDRAA 461

Query:   469 ESLKRISAVVL 479
              ++K ++  VL
Sbjct:   462 STIKEVAQAVL 472

GO:0035339 "SPOTS complex" evidence=ISS

UNIPROTKB|Q60HD1 SPTLC1 "Serine palmitoyltransferase 1" [Macaca fascicularis (taxid:9541)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 189/433 (43%), Positives = 271/433 (62%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTII-SGKEVV 112
             K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +
Sbjct:    42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKIVVNGKECI 101

Query:   113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
             NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++
Sbjct:   102 NFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEA 161

Query:   173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL 232
             I+YSYG +T+ SAIP + K+GD++  D    + IQ GL  SRS +  FKHNDM  L   L
Sbjct:   162 IIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLL 221

Query:   233 -ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              E+   D K  +K R   R+IVVE +Y N+G I PL EL++LK KY+ R+FL+ES SFGV
Sbjct:   222 KEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGV 281

Query:   289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 348
             LG  GRG+TEH G+ +D ID+++A M +ALA+ GGFC G + V+DHQRLS  GY F    
Sbjct:   282 LGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASL 341

Query:   349 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                     I A++++EENP +   LK+    +   L  I GL +     SP   L LE+S
Sbjct:   342 PPLLAAAAIEALNIMEENPGIFAVLKEKCRQIHKALQGISGLKVVGESLSPAFHLQLEES 401

Query:   409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML--DKCRLPVGIRLFVSAAHSEADLVK 466
             TGS + D++LL++I D  +  D    +T  R +   +KC  P  IR+ V+   +  +L +
Sbjct:   402 TGSREQDVRLLQEIVDQCM--DRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTAEELER 459

Query:   467 ACESLKRISAVVL 479
             A  ++K ++  VL
Sbjct:   460 AASTIKEVAQAVL 472

GO:0035339 "SPOTS complex" evidence=ISS

UNIPROTKB|F1RN05 SPTLC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 185/432 (42%), Positives = 274/432 (63%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTII-SGKEVV 112
             K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +
Sbjct:    30 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVSKDHPALNYNIVSGPPSHNIVVNGKECI 89

Query:   113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
             NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++
Sbjct:    90 NFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEA 149

Query:   173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL 232
             I+YSYG +T+ SAIP + K+GD++  D+   + IQ GL  SRS +  F+HNDM+ L   L
Sbjct:   150 IIYSYGFATIASAIPAYSKRGDIVFVDKAACFAIQKGLQASRSDIKLFEHNDMEDLERLL 209

Query:   233 -ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              E+   D K  +K R   R+IVVE +Y N+G I PL EL++LK KY+ R+FL+ES SFGV
Sbjct:   210 KEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGV 269

Query:   289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 348
             LG  GRG+TEH G+ +D ID+++A M ++LA+ GGFC G + V+DHQRLS  GY F    
Sbjct:   270 LGEHGRGVTEHFGINIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLSGQGYCFSASL 329

Query:   349 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                     I A++++EENP +   LK+    +   L  I GL +A    SP   L LE+S
Sbjct:   330 PPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHKALQGISGLKVAGESISPAFHLQLEES 389

Query:   409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV-GIRLFVSAAHSEADLVKA 467
             TGS   D++LL++I    + + G+ +  ++    ++  LP   IR+ V+   +E +L KA
Sbjct:   390 TGSRDKDVKLLQEIVTGCM-DRGIALTQARYLEKEEKNLPPPSIRVVVTVEQTEEELDKA 448

Query:   468 CESLKRISAVVL 479
               ++  ++ +VL
Sbjct:   449 ASTINEVAQIVL 460

GO:0046512 "sphingosine biosynthetic process" evidence=IEA

GO:0046511 "sphinganine biosynthetic process" evidence=IEA

GO:0035339 "SPOTS complex" evidence=IEA

GO:0006686 "sphingomyelin biosynthetic process" evidence=IEA

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q3MHG1 SPTLC1 "Serine palmitoyltransferase 1" [Bos taurus (taxid:9913)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 185/433 (42%), Positives = 272/433 (62%)

Query:    55 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTII-SGKEVV 112
             K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +
Sbjct:    42 KTYKLQERSDLTLKEKEELIEEWQPEPLVPPVSKDHPALNYNIVSGPPSHNIVVNGKECI 101

Query:   113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
             NFAS N+LGL+ + +L  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++
Sbjct:   102 NFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEA 161

Query:   173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL 232
             I+YSYG +T+ SAIP + K+GD++  D+   + IQ GL  SRS +  F HNDMD L   L
Sbjct:   162 IIYSYGFATIASAIPAYSKRGDIVFVDKAACFAIQKGLQASRSDIKVFNHNDMDDLERLL 221

Query:   233 -ERVTADNKRAKKLR---RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              E+   D K  +K R   R+I+VE +Y N+G + PL EL++LK KY+ R+FL+ES SFGV
Sbjct:   222 KEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYKYKARIFLEESLSFGV 281

Query:   289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXX 348
             LG  GRG+TEH G+ +D ID+++A M ++LA+ GGFC G + V+DHQRLS  GY F    
Sbjct:   282 LGEHGRGVTEHFGISIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLSGQGYCFSASL 341

Query:   349 XXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                     I A++++EENP +   LK+    +   L  I GL +     SP + L LE++
Sbjct:   342 PPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHKALQGIPGLKVVGESISPALHLQLEET 401

Query:   409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML--DKCRLPVGIRLFVSAAHSEADLVK 466
             TG  + D++LL++I    + + G+  +T  R +   +K   P  IR+ V+   +E DL K
Sbjct:   402 TGCRERDVKLLQEIVTQCM-DRGI-ALTQARYLEKEEKYLPPPSIRVVVTVEQTEEDLEK 459

Query:   467 ACESLKRISAVVL 479
             A  ++  ++  VL
Sbjct:   460 AASTISEVAQTVL 472

GO:0035339 "SPOTS complex" evidence=ISS

GO:0046512 "sphingosine biosynthetic process" evidence=IEA

GO:0046511 "sphinganine biosynthetic process" evidence=IEA

GO:0006686 "sphingomyelin biosynthetic process" evidence=IEA

GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10P01	LCB1A_ORYSJ	2, ., 3, ., 1, ., 5, 0	0.7110	0.9958	0.9917	no	no
Q94IB8	LCB1_ARATH	2, ., 3, ., 1, ., 5, 0	0.7766	0.9917	0.9937	yes	no
Q55FL5	SPTC1_DICDI	2, ., 3, ., 1, ., 5, 0	0.4342	0.9213	0.9290	yes	no
O54695	SPTC1_CRIGR	2, ., 3, ., 1, ., 5, 0	0.4547	0.9089	0.9281	yes	no
O59682	LCB1_SCHPO	2, ., 3, ., 1, ., 5, 0	0.3658	0.9109	0.8644	yes	no
Q5R9T5	SPTC1_PONAB	2, ., 3, ., 1, ., 5, 0	0.4543	0.9171	0.9365	yes	no
P25045	LCB1_YEAST	2, ., 3, ., 1, ., 5, 0	0.3352	0.9606	0.8315	yes	no
O35704	SPTC1_MOUSE	2, ., 3, ., 1, ., 5, 0	0.4659	0.9047	0.9238	yes	no
Q3MHG1	SPTC1_BOVIN	2, ., 3, ., 1, ., 5, 0	0.4478	0.9130	0.9323	yes	no
O15269	SPTC1_HUMAN	2, ., 3, ., 1, ., 5, 0	0.4547	0.9089	0.9281	yes	no
Q7G4P2	LCB1C_ORYSJ	2, ., 3, ., 1, ., 5, 0	0.7096	0.9627	0.9647	no	no
Q6K8E7	LCB1B_ORYSJ	2, ., 3, ., 1, ., 5, 0	0.7311	0.9627	0.9667	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.921
3rd Layer	2.3.1.50	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	483
PLN02822	481	PLN02822, PLN02822, serine palmitoyltransferase	0.0
PLN03227	392	PLN03227, PLN03227, serine palmitoyltransferase-li	1e-113
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	1e-105
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	1e-93
PRK06939	397	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym	2e-79
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	2e-78
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	2e-72
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	3e-70
TIGR01822	393	TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co	5e-64
PLN02483	489	PLN02483, PLN02483, serine palmitoyltransferase	8e-50
TIGR01821	402	TIGR01821, 5aminolev_synth, 5-aminolevulinic acid	2e-49
PRK09064	407	PRK09064, PRK09064, 5-aminolevulinate synthase; Va	3e-46
PRK13393	406	PRK13393, PRK13393, 5-aminolevulinate synthase; Pr	1e-39
PRK13392	410	PRK13392, PRK13392, 5-aminolevulinate synthase; Pr	8e-37
PRK07179	407	PRK07179, PRK07179, hypothetical protein; Provisio	1e-32
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-29
PRK07505	402	PRK07505, PRK07505, hypothetical protein; Provisio	5e-18
PRK05937	370	PRK05937, PRK05937, 8-amino-7-oxononanoate synthas	7e-18
PLN02955	476	PLN02955, PLN02955, 8-amino-7-oxononanoate synthas	7e-18
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	7e-09
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	5e-08
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	3e-05
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	7e-04
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	8e-04
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	0.003

>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase

 Score =  921 bits (2383), Expect = 0.0
 Identities = 394/481 (81%), Positives = 433/481 (90%)

Query: 1   MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
           MA  +LN VN  L RV + L++P A AVVFGVHI GHL VE LL+VVI+FLLSQKSYKPP
Sbjct: 1   MALNVLNLVNAALERVTMLLEAPLARAVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
           KRPLT+KEIDELCDEW PE LIPPI EEMR EPPVLESAAGPHTII+GK+VVNFASANYL
Sbjct: 61  KRPLTEKEIDELCDEWTPEPLIPPITEEMRPEPPVLESAAGPHTIINGKDVVNFASANYL 120

Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
           GLIG+EK+ ESCTSALEKYGVGSCGPRGFYGTIDVHLDCE +IAKFLGTPDSILYSYGLS
Sbjct: 121 GLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS 180

Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
           T+FS IP FCKKGD+IVADEGVHWGIQNGLYLSRST+VYFKHNDM+SLRNTLE++TA+NK
Sbjct: 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENK 240

Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
           R KKLRRYIVVEA+YQNSGQIAPLDE++RLKEKYRFRV LDESNSFGVLG+SGRGL+EH 
Sbjct: 241 RKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHF 300

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GVP++KIDI+TAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360

Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
           DVLE+NP ++ KLK+N A+L  GLSDI GLSI SN  SPIVFL LEKSTGS K DL LLE
Sbjct: 361 DVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLE 420

Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
            IAD  LKED V VV SKRS LDKCRLPVGIRLFVSA H+E+D++KA ESLKR++A VL+
Sbjct: 421 HIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480

Query: 481 D 481
            
Sbjct: 481 K 481

Length = 481

>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional

 Score =  339 bits (872), Expect = e-113
 Identities = 161/385 (41%), Positives = 228/385 (59%), Gaps = 18/385 (4%)

Query: 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171
           +NFA+ ++L       L ++   +L  YG GSCGPRGFYGTID HL+ E  +A+FLGT  
Sbjct: 1   LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES 60

Query: 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNT 231
           +ILYS G ST  S +  F K+GDL+V D GV+  +  G+ LSR+ V +F+HNDM  LR  
Sbjct: 61  AILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRV 120

Query: 232 LERVTADNKRAKKL----RRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG 287
           LE+V A +   K+     RR++VVE +Y+N+G +APL EL+ LKE++ +R+ LDES SFG
Sbjct: 121 LEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFG 180

Query: 288 VLGRSGRGLTEHCGV-PVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA 346
            LG+SGRG  EH G+ P+   +IVT ++ +A  + GG   GS  VVDHQRLS SGY FSA
Sbjct: 181 TLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA 240

Query: 347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL--SDI-------HGLSIASNPE 397
           S PP+LA A  TA       P L+ +L  + A L + L  S         + L I S+P 
Sbjct: 241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPI 300

Query: 398 SPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLF 454
           SPI++L L     + + D   +L+ IA  +L E GV VV++   +    +   P  +R+ 
Sbjct: 301 SPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVV 359

Query: 455 VSAAHSEADLVKACESLKRISAVVL 479
            +A+H+  D+ K    L      +L
Sbjct: 360 ANASHTREDIDKLLTVLGEAVEAIL 384

Length = 392

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score =  318 bits (816), Expect = e-105
 Identities = 138/388 (35%), Positives = 218/388 (56%), Gaps = 31/388 (7%)

Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
             L+   G      G++V+NF S +YLGL  H +L+E+  +A+ +YGVG+ G R   GT 
Sbjct: 24  RALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTS 83

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
           D+H++ E  +A FLG   ++L+S G       +    KKGDLI +DE  H  I +G+ LS
Sbjct: 84  DLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS 143

Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
           R+ V  FKHND+D L   LE      +     R+ IV E V+   G IAPL EL+ L EK
Sbjct: 144 RAEVRRFKHNDLDHLEALLEE----ARENGARRKLIVTEGVFSMDGDIAPLPELVELAEK 199

Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           Y   +++DE+++ GVLG +GRGL EH G+  +++DI+   +G AL + GG+  GSA ++D
Sbjct: 200 YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID 259

Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
           + R  +  ++FS +LPP +A+AA+ A+ +LEE P+   +L++  A  R+ L    GL + 
Sbjct: 260 YLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK-ALGLVLL 318

Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCR 446
            + ESPI+ +IL     +++    LL         E+G++V       V    + L    
Sbjct: 319 PS-ESPIIPVILGDEERALEASRALL---------EEGIYVSAIRPPTVPKGTARL---- 364

Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
                R+ ++AAH+E D+ +  E+L  +
Sbjct: 365 -----RITLTAAHTEEDIDRLAEALSEV 387

Length = 388

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score =  287 bits (737), Expect = 1e-93
 Identities = 132/372 (35%), Positives = 204/372 (54%), Gaps = 30/372 (8%)

Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
           K+V+NF S +YLGL  H +++E+   AL+KYGVG+ G R   GT D+H + E  +A+F G
Sbjct: 1   KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60

Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
              ++++S G +     +     KGDLI++D   H  I +G+ LS +    FKHNDM+ L
Sbjct: 61  KEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDL 120

Query: 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
              L          KKL   IV E VY   G IAPL EL+ L +KY   +F+DE++S GV
Sbjct: 121 EKLLREARRPYG--KKL---IVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGV 175

Query: 289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASL 348
            G  GRG+ E  G+  D +DI+   +G A    GG+  GS  ++D+ R  + G++FS SL
Sbjct: 176 YGPHGRGVEEFGGLT-DDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSL 234

Query: 349 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
           PP +A+AA+ A++VL+  P+   +L++N   LR GL ++ G  +  +P   I  LI +  
Sbjct: 235 PPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDP 293

Query: 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG------IRLFVSAAHSEA 462
             ++          +D AL E G++V           R P        +R+ +SAAH++ 
Sbjct: 294 AKAVA--------FSD-ALLERGIYVQA--------IRYPTVPRGTARLRISLSAAHTKE 336

Query: 463 DLVKACESLKRI 474
           D+ +  E+LK +
Sbjct: 337 DIDRLLEALKEV 348

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

 Score =  252 bits (646), Expect = 2e-79
 Identities = 130/388 (33%), Positives = 205/388 (52%), Gaps = 32/388 (8%)

Query: 95  VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+ S  G   T+  GKEV+NF + NYLGL  H +L+ +  +AL+ +G G    R   GT 
Sbjct: 27  VITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQ 86

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
           D+H + E ++AKFLGT D+ILYS               K D I++D   H  I +G+ L 
Sbjct: 87  DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLC 146

Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
           ++    + +NDM  L   L+       R     + I  + V+   G IAPL E+  L +K
Sbjct: 147 KAKRYRYANNDMADLEAQLKEAKEAGAR----HKLIATDGVFSMDGDIAPLPEICDLADK 202

Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVV 332
           Y   V +D+S++ G +G +GRG  EH GV +D++DI+T  +G AL    GG+  G   V+
Sbjct: 203 YDALVMVDDSHAVGFVGENGRGTVEHFGV-MDRVDIITGTLGKALGGASGGYTAGRKEVI 261

Query: 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 392
           D  R  S  Y+FS SL P + +A+I  +++LEE+ +L  +L +N    R G++   G ++
Sbjct: 262 DWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-GFTL 320

Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLDKCR 446
               E PI+ ++L         D +L ++ AD  L E+GV+V      V  K     + R
Sbjct: 321 G-PGEHPIIPVML--------GDAKLAQEFAD-RLLEEGVYVIGFSFPVVPK----GQAR 366

Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
               IR  +SAAH++  L +A ++ +++
Sbjct: 367 ----IRTQMSAAHTKEQLDRAIDAFEKV 390

Length = 397

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score =  248 bits (636), Expect = 2e-78
 Identities = 122/387 (31%), Positives = 200/387 (51%), Gaps = 35/387 (9%)

Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
             L+   GP  +  G+ ++NF+S +YLGL  H +++++     E+YG GS   R   G  
Sbjct: 1   RPLDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNS 60

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
            +H + E  +A++ GT  ++L+S G       I     KGDLI++D   H  + +G  LS
Sbjct: 61  PLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLS 120

Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + V  ++HND++ L   LE      K   + R+ IV + V+   G IAPL +L+ L E+
Sbjct: 121 GARVRRYRHNDVEHLERLLE------KNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER 174

Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           Y   + +D+++  GVLG  GRG  EH G+  + +DI    +  AL + G +  GS  ++D
Sbjct: 175 YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALID 234

Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
           +    +   +FS +LPP +A+AA+ A+++++E P    KL    A LR GL    G ++ 
Sbjct: 235 YLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEA-LGFTL- 292

Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCRLP 448
               +PIV +I+    G   + L L E      L++ G+FV      T          +P
Sbjct: 293 MPSCTPIVPVII----GDNASALALAE-----ELQQQGIFVGAIRPPT----------VP 333

Query: 449 VG---IRLFVSAAHSEADLVKACESLK 472
            G   +RL +SAAH+  D+ +  E+LK
Sbjct: 334 AGTSRLRLTLSAAHTPGDIDRLAEALK 360

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score =  233 bits (598), Expect = 2e-72
 Identities = 121/391 (30%), Positives = 192/391 (49%), Gaps = 40/391 (10%)

Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
              E  AG   ++ G+ ++NFAS +YLGL  H +L+ +   A  +YG GS G R   G  
Sbjct: 24  RPREGGAGRWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNS 83

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H   E  +A++ G   ++L+S G +   + +     KGDLIV+D+  H  + +G  LS
Sbjct: 84  PAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS 143

Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
           R+ V  + HND+D+L   L +  A        R  IV E+V+   G +APL EL+ L  +
Sbjct: 144 RARVRRYPHNDVDALEALLAKWRAG-------RALIVTESVFSMDGDLAPLAELVALARR 196

Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   + +DE++  GVLG  GRGL    G+  +   I+   +G AL + G    GS  ++D
Sbjct: 197 HGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLID 256

Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
           +    +  ++F+ +LPP  A+AA  A+ +L   P+   +L    A LR GL    G  + 
Sbjct: 257 YLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA-LGFQL- 314

Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCR 446
            + +S I  LI+    G  +  L L       AL+E G +V       V           
Sbjct: 315 MDSQSAIQPLIV----GDNERALALAA-----ALQEQGFWVGAIRPPTV----------- 354

Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
            P G   +R+ ++AAH+EAD+ +  E+L   
Sbjct: 355 -PAGTSRLRITLTAAHTEADIDRLLEALAEA 384

Length = 385

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score =  228 bits (583), Expect = 3e-70
 Identities = 116/388 (29%), Positives = 206/388 (53%), Gaps = 30/388 (7%)

Query: 92  EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
              VLESA GP   ++GKEV+N +S NYLG   H +L E+   A+++YGVG+   R   G
Sbjct: 16  SIRVLESAQGPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAG 75

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
           T+ +H + E ++AKF  T  ++++  G +T    +    +KGD++++DE  H  I +GL 
Sbjct: 76  TLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLR 135

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
           L+++T   +KH DMD L   L    +  K      + IV + V+   G +APL E++ L 
Sbjct: 136 LTKATKKIYKHADMDDLDRVLRENPSYGK------KLIVTDGVFSMDGDVAPLPEIVELA 189

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
           E+Y    ++D+++  GV+G +GRG   H G+  DK+DI    +  A+   GG+  G   +
Sbjct: 190 ERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKEL 248

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
           +++ +  +  ++FS + PP + +A   A+D L+ +P+L+ +L  NT   + GL  + G  
Sbjct: 249 IEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-GYD 307

Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
                E+PI  +++         D +  ++ +   L ++G+F       T  R      R
Sbjct: 308 T-GGSETPITPVVI--------GDEKAAQEFSR-RLFDEGIFAQSIVFPTVPR---GTAR 354

Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
               IR   +A H++ DL +A ++ +++
Sbjct: 355 ----IRNIPTAEHTKDDLDQALDAYEKV 378

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase

 Score =  211 bits (540), Expect = 5e-64
 Identities = 134/396 (33%), Positives = 198/396 (50%), Gaps = 48/396 (12%)

Query: 95  VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           ++ S  G    +  G+EV+NF + NYLGL  H  L+++   AL+++G G    R   GT 
Sbjct: 23  IITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQ 82

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKG----------DLIVADEGVH 203
           D+H + EA+IA FLGT D+ILY+           CF   G          D I++D   H
Sbjct: 83  DIHKELEAKIAAFLGTEDTILYA----------SCFDANGGLFETLLGAEDAIISDALNH 132

Query: 204 WGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP 263
             I +G+ L ++    + +NDM  L   L+   A   R     R I  + V+   G IAP
Sbjct: 133 ASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGAR----HRLIATDGVFSMDGVIAP 188

Query: 264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG 322
           LDE+  L +KY   V +DE ++ G LG +GRG  E CGV + ++DI+T  +G AL    G
Sbjct: 189 LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASG 247

Query: 323 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382
           GF T    VV+  R  S  Y+FS SLPP +  A+I  +++LE + +L  +L  NT   R 
Sbjct: 248 GFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRE 307

Query: 383 GLS----DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438
            +     DI     A +P  P+           M  D  L +  A   L+E G++V    
Sbjct: 308 RMEAAGFDIKP---ADHPIIPV-----------MLYDAVLAQRFARRLLEE-GIYVTGFF 352

Query: 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
             ++ K +    IR+ +SAAH+E  L +A E+  RI
Sbjct: 353 YPVVPKGQ--ARIRVQISAAHTEEQLDRAVEAFTRI 386

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393

>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase

 Score =  176 bits (449), Expect = 8e-50
 Identities = 104/381 (27%), Positives = 190/381 (49%), Gaps = 32/381 (8%)

Query: 113 NFASANYLGLIGHEKLLESCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
           N  S NYLG    +   E CT     +L+KY   +C  R   GT  +H + E  +A+F+G
Sbjct: 104 NLGSYNYLGFAAAD---EYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG 160

Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
            P +I++  G +T  + IP    KG LI++D   H  I NG   S +T+  F+HN    L
Sbjct: 161 KPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220

Query: 229 RNTLERVTADNKRAKKLRRY----IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
              L    A+  + +  R +    ++VE +Y   G++  L E++ + +KY+  V+LDE++
Sbjct: 221 EEVLREQIAEG-QPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAH 279

Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
           S G +G++GRG+ E  GV    +DI+      +  + GG+  GS  ++ + + +   +++
Sbjct: 280 SIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLY 339

Query: 345 SASLPPYLASAAITAIDVL--EENPDL----ITKLKKNTAILRTGLSDIHGLSIASNPES 398
           + S+ P      I+AI V+  E+  +     + ++++N+   R+ L  + G  +  + +S
Sbjct: 340 ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDS 398

Query: 399 PIVFLILEKSTGSMKNDLQLLEDIADWALKED-GVFVVTSKRSMLDKCRLPVGIRLFVSA 457
           P++ ++L             +   +   LK++  V VV    + L   R     R+ +SA
Sbjct: 399 PVMPIMLYNPAK--------IPAFSRECLKQNVAVVVVGFPATPLLLAR----ARICISA 446

Query: 458 AHSEADLVKACESLKRISAVV 478
           +HS  DL+KA E +  +  +V
Sbjct: 447 SHSREDLIKALEVISEVGDLV 467

Length = 489

>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase

 Score =  173 bits (441), Expect = 2e-49
 Identities = 98/334 (29%), Positives = 171/334 (51%), Gaps = 19/334 (5%)

Query: 103 HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEAR 162
           H     K+V  + S +YLG+  H ++L++    L+KYG G+ G R   GT   H++ EA 
Sbjct: 39  HRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAE 98

Query: 163 IAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYF 220
           +A   G   +++++ G     + +    K   G +I +DE  H  +  G+  S +    F
Sbjct: 99  LADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIF 158

Query: 221 KHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280
           +HND+  L   L+   + +    K+   I  E+VY   G IAP++E+  L +KY    +L
Sbjct: 159 RHNDVAHLEKLLQ---SVDPNRPKI---IAFESVYSMDGDIAPIEEICDLADKYGALTYL 212

Query: 281 DESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSS 340
           DE ++ G+ G  G G+ E  G+ + +IDI+   +  A    GG+   S +++D  R  + 
Sbjct: 213 DEVHAVGLYGPRGGGIAERDGL-MHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAP 271

Query: 341 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI 400
           G++F+ SLPP +A+ A  +I  L+E+ DL    ++N   L+  L  + G+ +  NP S I
Sbjct: 272 GFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIPVIPNP-SHI 329

Query: 401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
           V +I+         D  L + ++D  L + G++V
Sbjct: 330 VPVII--------GDAALCKKVSDLLLNKHGIYV 355

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402

>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated

 Score =  165 bits (420), Expect = 3e-46
 Identities = 103/335 (30%), Positives = 172/335 (51%), Gaps = 29/335 (8%)

Query: 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166
             +EV  + S +YLG+  H K++E+   AL++ G G+ G R   GT   H++ E  +A  
Sbjct: 44  GEREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADL 103

Query: 167 LGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
            G   +++++ G       LST+   IP       +I +DE  H  +  G+  SR     
Sbjct: 104 HGKEAALVFTSGYVSNDATLSTLAKLIP-----DCVIFSDELNHASMIEGIRRSRCEKHI 158

Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
           F+HND+  L    E + A +    KL   I  E+VY   G IAP+ E+  L +KY    +
Sbjct: 159 FRHNDVAHLE---ELLAAADPDRPKL---IAFESVYSMDGDIAPIAEICDLADKYNALTY 212

Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
           LDE ++ G+ G  G G+ E  G+ +D+IDI+   +  A    GG+  GSA +VD  R  +
Sbjct: 213 LDEVHAVGMYGPRGGGIAERDGL-MDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYA 271

Query: 340 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
            G++F+ SLPP +A+AA+ +I  L+E+ +   + ++  A L+  L    G+ +  N  S 
Sbjct: 272 PGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIPVMPNE-SH 329

Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
           IV +++         D +  +  +D  L+E G++V
Sbjct: 330 IVPVMV--------GDPEKCKKASDMLLEEHGIYV 356

Length = 407

>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional

 Score =  147 bits (373), Expect = 1e-39
 Identities = 109/352 (30%), Positives = 170/352 (48%), Gaps = 35/352 (9%)

Query: 96  LESAAG--PHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF 149
           LE  AG  P     G    +EV  + S +YLG+  H  +L +   AL+  G G+ G R  
Sbjct: 26  LERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNI 85

Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGV 202
            GT   H+  EA +A   G   ++L++ G       LST+ S +P     G +I++DE  
Sbjct: 86  SGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLP-----GCVILSDELN 140

Query: 203 HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA 262
           H  +  G+  SR+    F+HND   L   L  +        KL   +  E+VY   G IA
Sbjct: 141 HASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPH---RPKL---VAFESVYSMDGDIA 194

Query: 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG 322
           P+ E+  + EK+    +LDE ++ G+ G  G G+ E  G+  D++ I+   +  A    G
Sbjct: 195 PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVMG 253

Query: 323 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382
           G+ TGSA + D  R  +SG++F+ SLPP +A+ A+ ++  L+ +     + +   A LR 
Sbjct: 254 GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRA 313

Query: 383 GLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
            L D  G+    NP S IV +        M  D  L + I+D  L   G++V
Sbjct: 314 RL-DKAGIPHLPNP-SHIVPV--------MVGDPVLCKQISDELLDRYGIYV 355

Length = 406

>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional

 Score =  139 bits (353), Expect = 8e-37
 Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 23/344 (6%)

Query: 97  ESAAGPHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT 152
           E+   P     G    + V  + S +YLG+  H  ++ +   AL++YG G+ G R   GT
Sbjct: 30  EAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGT 89

Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGL 210
              H+  E  +A   G   ++L++ G  +  +A+    K   G +I++D   H  +  G+
Sbjct: 90  SHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGI 149

Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
             S +    F+HND+  L   L  V  D  R K     I  E+VY   G IAP++ +  L
Sbjct: 150 RRSGAEKQVFRHNDLADLEEQLASVDPD--RPK----LIAFESVYSMDGDIAPIEAICDL 203

Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 330
            ++Y    ++DE ++ G+ G  G G+ E  G+ +D+ID++   +  A    GG+   SA 
Sbjct: 204 ADRYNALTYVDEVHAVGLYGARGGGIAERDGL-MDRIDMIQGTLAKAFGCLGGYIAASAD 262

Query: 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL 390
           ++D  R  + G++F+ +LPP +A+ A  AI  L+ +       +   A L+  L+   G+
Sbjct: 263 LIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GI 321

Query: 391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
            +  +P S IV +        M  D  L + I+D  + E G+++
Sbjct: 322 PVMPSP-SHIVPV--------MVGDPTLCKAISDRLMSEHGIYI 356

Length = 410

>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional

 Score =  128 bits (323), Expect = 1e-32
 Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 49/380 (12%)

Query: 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK 165
             G + +   S +YL L GH  ++++  +AL++ G        F          E ++A 
Sbjct: 51  TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA 110

Query: 166 FLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
           F G    +L   G +     +         +  D   H  +  G+  + +    F+HND+
Sbjct: 111 FTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDV 170

Query: 226 DSLRNTLERVTADNKRAKKLRRY----IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
           D LR             +++ R+    IVV++VY  +G IAPL +++ + E++   + +D
Sbjct: 171 DHLR-------------RQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD 217

Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
           ES+S G  G  G GL    G+   ++  +TA++  A A   G  T    + ++    S  
Sbjct: 218 ESHSLGTHGPQGAGLVAELGL-TSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYP 276

Query: 342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV 401
            +FS++L P+  +     ++V+E   D   +L  N   LR GLS++ G +I S  ES I+
Sbjct: 277 AIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYNIRS--ESQII 333

Query: 402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVF------VVTSK-RSMLDKCRLPVGIRLF 454
            L     TGS +N  ++L D    AL+E  VF        T K R++         IRL 
Sbjct: 334 AL----ETGSERN-TEVLRD----ALEERNVFGAVFCAPATPKNRNL---------IRLS 375

Query: 455 VSAAHSEADL---VKACESL 471
           ++A  + +DL   ++ C   
Sbjct: 376 LNADLTASDLDRVLEVCREA 395

Length = 407

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  118 bits (298), Expect = 1e-29
 Identities = 76/379 (20%), Positives = 143/379 (37%), Gaps = 38/379 (10%)

Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
            + +N  S  YLG       L +   A +     + G R  YG  D   +    +AKFLG
Sbjct: 1   TDKINLGSNEYLGD---SGTLPAVAKAEKD--ALAGGTRNLYGPTDGLPELREALAKFLG 55

Query: 169 TP--------DSILYSYGLSTMFSAIP-CFCK-KGDLIVADEGVHWGIQNGLYLSRSTVV 218
                      ++++  G      A+        GD I+     +        L+   VV
Sbjct: 56  RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115

Query: 219 YFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDEL---IRLKEKYR 275
            +     +      + + A  K A +  + ++  + +  +G +A L+EL   + L +++ 
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175

Query: 276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV 332
             + +DE+ +  V G S   +     +      +V  +   A    G   G+  G+A V+
Sbjct: 176 ILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVI 234

Query: 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 392
              R  +  +  S  L    A+A    + V  E  ++  ++K+    LR GL    GLS+
Sbjct: 235 SQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSV 293

Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 452
               ++    L         +  L L + +    L+E GV+V             P  +R
Sbjct: 294 LP-SQAGFFLLTG----LDPEAALALAQVL----LEEVGVYVTPGS-----SFGGPGWLR 339

Query: 453 LFVSAAHSEADLVKACESL 471
           + V A  +E +L +  E++
Sbjct: 340 ITV-AGGTEEELEELLEAI 357

Length = 357

>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional

 Score = 85.4 bits (212), Expect = 5e-18
 Identities = 92/396 (23%), Positives = 156/396 (39%), Gaps = 45/396 (11%)

Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGT 152
            V E      T+  G   VNF S +YLGL  H  ++E    AL++ G       R    +
Sbjct: 31  TVGEREGILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRS 90

Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK------KGDLIVADEGVHWGI 206
             +  D E  +++  G    + ++   +     +P              +V D+  H  +
Sbjct: 91  -QILKDLEEALSELFG-ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASL 148

Query: 207 QN--GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264
               G+    + V    HND+D+L +  +     NK         V + VY   G IAP+
Sbjct: 149 NILKGICADETEVETIDHNDLDALEDICKT----NKTV-----AYVADGVYSMGG-IAPV 198

Query: 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGG 323
            EL+RL+EKY   +++D+++   + G++G G         +++  I+ A++G A    GG
Sbjct: 199 KELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGG 258

Query: 324 FCT-GSARVVDHQRLSSSGYVFSASL--PPYLASAAITAIDVLEENPDLITKLKKNTAIL 380
               G A  ++     +    FS SL      A  A   I + EE   L  KL+ N A  
Sbjct: 259 VIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA-- 316

Query: 381 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA--LKEDGVFVVTSK 438
              L D    +  S    PI  + +              +     A  L + G +     
Sbjct: 317 ---LFDSLIPTEQSGSFLPIRLIYIGDE-----------DTAIKAAKQLLDRGFYTSPVF 362

Query: 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
             ++ K R   G+R+   A+H+  ++ + C  LK I
Sbjct: 363 FPVVAKGR--AGLRIMFRASHTNDEIKRLCSLLKEI 396

Length = 402

>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 141 VGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC----KKGDLI 196
           +G  G R   G   +  D E +IA F G P++ +   G    + A    C       D +
Sbjct: 43  LGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG----YMANLGLCAHLSSVTDYV 98

Query: 197 VADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256
           + DE VH  +   L +       F+HND+D L + LE   +  +R+   R +I V +VY 
Sbjct: 99  LWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLE---SCRQRSFG-RIFIFVCSVYS 154

Query: 257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH 316
             G +APL+++I L +KY   + +DE+++ G+ G  G+G     G   +    V      
Sbjct: 155 FKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG--YENFYAVLVTYSK 212

Query: 317 ALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 363
           AL + G     S+ V     L+S    +S  LPP+L  +   A D L
Sbjct: 213 ALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL 259

Length = 370

>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase

 Score = 85.5 bits (211), Expect = 7e-18
 Identities = 100/422 (23%), Positives = 180/422 (42%), Gaps = 66/422 (15%)

Query: 75  EWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTS 134
           +W+ +  IP   EE+     + E   G       K+++ F+  +YLGL  H  +  +  +
Sbjct: 75  KWLHD--IPSNGEEIFSGDALAEERKG-----RFKKLLLFSGNDYLGLSSHPTISNAAAN 127

Query: 135 ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD 194
           A ++YG+G  G     G    H   E+ +A      D ++   G +   +A+        
Sbjct: 128 AAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVAS 187

Query: 195 LIVA------DEGV--------HWGIQNGLYLSR----STVVYFKHNDMDSLRNTLERVT 236
           L+ A      +E V        H  I +G+ L+       V  ++H DM  L + L    
Sbjct: 188 LLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCK 247

Query: 237 ADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL 296
                    R+ +V ++++   G  AP++EL +L++KY F + +D+++   V G +G G+
Sbjct: 248 MK-------RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGV 300

Query: 297 TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG--YVFSASLPPYLAS 354
            E      D +D+    +  A    GGF   S +    Q + S G  ++FS ++P  +A+
Sbjct: 301 AEEFNCEAD-VDLCVGTLSKAAGCHGGFIACSKKW--KQLIQSRGRSFIFSTAIPVPMAA 357

Query: 355 AAITAIDVLEENPDLITKLKKNTAILR--TGLSDIHGLSIASNPESPIVFLILEKSTGSM 412
           AA  A+ V  +      +  +  AI         + G+ I+    SPI+ L++     ++
Sbjct: 358 AAYAAVVVARK------EKWRRKAIWERVKEFKALSGVDIS----SPIISLVVGNQEKAL 407

Query: 413 KNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSEADLVKACE 469
           K    LL+            F V + R      + CRL    R+ +SAAH+  D+ K   
Sbjct: 408 KASRYLLKS----------GFHVMAIRPPTVPPNSCRL----RVTLSAAHTTEDVKKLIT 453

Query: 470 SL 471
           +L
Sbjct: 454 AL 455

Length = 476

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 63/285 (22%)

Query: 215 STVVYFKHNDMDSLRNTLE----RVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDE 266
              +   +ND+++L    E     + A           ++VE V  N G + P    L+ 
Sbjct: 177 KHTLVLPYNDLEALEEAFEEYGDDIAA-----------VIVEPVAGNMGVVPPEPGFLEG 225

Query: 267 LIRLKEKYRFRVFLDES-NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGF- 324
           L  L E++   +  DE    F V   +  G   + GV   + D+ T  +G  +   GG  
Sbjct: 226 LRELTEEHGALLIFDEVITGFRV---ALGGAQGYYGV---EPDLTT--LGKIIG--GGLP 275

Query: 325 ---CTGSARVVDHQRLSSSGYVFSA-SLP--PYLASAAITAIDVLEENPDLITKLKKNTA 378
                G A +++   L+  G V+ A +L   P   +A +  ++ L     +  +L     
Sbjct: 276 IGAFGGRAEIMEQ--LAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGE 333

Query: 379 ILRTGLSDI---HGL-----SIASNPESPIVFLILEKSTGS--MKNDLQLLEDIADWALK 428
            L  GL      HG+      + S     I F        +   ++D++         L 
Sbjct: 334 RLAEGLRAAAERHGIPLTVNRVGSMFG--IFFTEEGVRNYADAKRSDVERFAKFFHHLLN 391

Query: 429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473
             GV++  S+               F+S AH+E D+ +  E+   
Sbjct: 392 R-GVYLAPSQFEA-----------GFLSTAHTEEDIDRTLEAADE 424

Length = 432

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 60/252 (23%)

Query: 249 IVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV---LGRSGRGL-TEHC 300
           ++VE +    G I P    L  L  L  K+   +  DE     V    GR+G+    EH 
Sbjct: 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE-----VQTGFGRTGKMFAFEHF 249

Query: 301 GVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSS--GYVFSASLPPYLAS 354
           GV     DIVT  +G  L   GG       G   ++D         G  F  +  P   +
Sbjct: 250 GVE---PDIVT--LGKGLG--GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGN--PLACA 300

Query: 355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------------GLSIASNPESPIVF 402
           AA+  ++VLEE   L+    +    LR  L ++             GL I          
Sbjct: 301 AALAVLEVLEE-EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIG--------- 350

Query: 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 462
           + L K   +   D +L   I   A  E G+ +  S  ++         IRL      +E 
Sbjct: 351 IELVKDRATKPPDKELAAKIIK-AALERGLLLRPSGGNV---------IRLLPPLIITEE 400

Query: 463 DLVKACESLKRI 474
           ++ +  ++L   
Sbjct: 401 EIDEGLDALDEA 412

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 58/275 (21%)

Query: 223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRV 278
           ND+++L    E      + A      ++VE V  N G + P    L  L  L E+Y   +
Sbjct: 180 NDLEALEEVFEE--YGEEIAG-----VIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLL 232

Query: 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDH 334
             DE  +   +   G    E+ GV   + D+ T  +G  +   GG       G   +++ 
Sbjct: 233 IFDEVMTGFRVALGGA--QEYFGV---EPDLTT--LGKIIG--GGLPVGAFGGRREIMER 283

Query: 335 QRLSSSGYVFSA---SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---H 388
             L+  G V+ A   S  P   +A +  + +L+E   + T+L +    L  GLS++    
Sbjct: 284 --LAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDT 340

Query: 389 GLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447
           G+    +   S       E+           + + AD A K D          MLDK   
Sbjct: 341 GIPHTVNRVGSMFSLFFTEEE----------VTNYAD-AKKSDTELFAKFFHEMLDK--- 386

Query: 448 PVGIRL--------FVSAAHSEADLVKACESLKRI 474
             G+ L        F+SAAH+E D+    E+ + +
Sbjct: 387 --GVFLPPSQFEACFLSAAHTEEDIENTIEAAEEV 419

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)

Query: 217 VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-APLDELIRLKE--- 272
             Y  +ND++SL+  ++  TA           ++VE +    G   A  + L  L+E   
Sbjct: 152 FSYAPYNDIESLKKAIDDETAA----------VIVEPIQGEGGVNPASAEFLKALREICK 201

Query: 273 KYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
                +  DE  + G+ GR+G+    EH G+   + DI+T A G       G       V
Sbjct: 202 DKDALLIFDEVQT-GI-GRTGKFFAYEHYGI---EPDIITLAKGLGGGVPIGATLAKEEV 256

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
            +       G  F  +  P   +AA+  ++V+E+   L+  +K+     +  L ++
Sbjct: 257 AEAFTPGDHGSTFGGN--PLACAAALAVLEVIEK-ERLLENVKEKGDYFKERLEEL 309

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 191 KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRR--- 247
             GD ++ D   H       Y   + +   K   +         +        K +    
Sbjct: 39  GPGDEVIVDANGHGSR----YWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVA 94

Query: 248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307
            IV+     + G + PL E+ ++ ++Y   + +D +++ G              +P    
Sbjct: 95  LIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGG-----ASPAPGVL-IPEGGA 148

Query: 308 DIVTAAMGHALATEGG 323
           D+VT ++   L  EGG
Sbjct: 149 DVVTFSLHKNLGGEGG 164

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 76/371 (20%), Positives = 130/371 (35%), Gaps = 94/371 (25%)

Query: 160 EAR--IAKFLG--TPDSILY----SYGLSTMFSAIPCFCKKGDLIVADEGVH------WG 205
            AR  +A+FL   + D I++    +  L+ +   +    K GD IV  +  H      W 
Sbjct: 70  AAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPW- 128

Query: 206 IQNGLYLSRST---VVYFKHNDMDSLR-NTLERVTADNKRAKKLRRYIVVEAVYQNSGQI 261
                 L++ T   V     +D   L  + LE++     +       + +  V   +G +
Sbjct: 129 ----QELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKL------VALSHVSNVTGTV 178

Query: 262 APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI-VTAAMGHA--L 318
            P+ E+  L  ++   V +D + + G           H  + V ++     A  GH   L
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAG-----------HLPIDVQELGCDFLAFSGHKWLL 227

Query: 319 ATEG-GFCTGSARVVDHQRLSSSG-----YV--------------FSASLPPYL-ASAAI 357
              G G       +++       G     YV              F A  P    A    
Sbjct: 228 GPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLA 287

Query: 358 TAIDVLEEN-PDLITK-LKKNTAILRTGLSDIHGLSIASNPE----SPIVFLILEKSTGS 411
            A+D L E   + I    ++ T  L  GLS++ G+ I   P+      + F +       
Sbjct: 288 AALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHP-- 345

Query: 412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA--------HSEAD 463
                    D+A   L E G+ V    R+    C  P+   L V A         ++E D
Sbjct: 346 --------HDVAT-LLDEKGIAV----RAGHH-CAQPLHRLLGVDATIRASLHLYNTEED 391

Query: 464 LVKACESLKRI 474
           + +  E+LK+ 
Sbjct: 392 VDRLLEALKKA 402

Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	483
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	100.0
PLN02822	481	serine palmitoyltransferase	100.0
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	100.0
PLN02955	476	8-amino-7-oxononanoate synthase	100.0
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	100.0
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	100.0
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	100.0
PLN02483	489	serine palmitoyltransferase	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
PRK09064	407	5-aminolevulinate synthase; Validated	100.0
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	100.0
PRK13392	410	5-aminolevulinate synthase; Provisional	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
PRK07179	407	hypothetical protein; Provisional	100.0
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	100.0
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07678	451	aminotransferase; Validated	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PLN00144	382	acetylornithine transaminase	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	100.0
PRK13034	416	serine hydroxymethyltransferase; Reviewed	100.0
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.97
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.97
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.97
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.96
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.96
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.96
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.95
PRK06108	382	aspartate aminotransferase; Provisional	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.95
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.95
PLN02721	353	threonine aldolase	99.95
PRK05764	393	aspartate aminotransferase; Provisional	99.95
PLN00175	413	aminotransferase family protein; Provisional	99.95
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.95
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.95
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.95
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.94
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.94
PRK09082	386	methionine aminotransferase; Validated	99.94
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
PRK06207	405	aspartate aminotransferase; Provisional	99.94
PRK07324	373	transaminase; Validated	99.94
PRK07682	378	hypothetical protein; Validated	99.94
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.94
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.94
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.94
PRK06290	410	aspartate aminotransferase; Provisional	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.94
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.94
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.94
PRK02948	381	cysteine desulfurase; Provisional	99.94
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.94
PRK07681	399	aspartate aminotransferase; Provisional	99.93
PRK06348	384	aspartate aminotransferase; Provisional	99.93
PRK10534	333	L-threonine aldolase; Provisional	99.93
PRK08361	391	aspartate aminotransferase; Provisional	99.93
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.93
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.93
PRK08912	387	hypothetical protein; Provisional	99.93
PRK12414	384	putative aminotransferase; Provisional	99.93
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.93
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.93
PRK08068	389	transaminase; Reviewed	99.93
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.93
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.93
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.93
PRK07777	387	aminotransferase; Validated	99.93
PRK09148	405	aminotransferase; Validated	99.93
PRK08960	387	hypothetical protein; Provisional	99.93
PRK07683	387	aminotransferase A; Validated	99.93
PRK08175	395	aminotransferase; Validated	99.93
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.93
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.93
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.93
PRK05942	394	aspartate aminotransferase; Provisional	99.93
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.93
PLN02187	462	rooty/superroot1	99.93
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.92
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.92
PRK06107	402	aspartate aminotransferase; Provisional	99.92
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.92
PRK06225	380	aspartate aminotransferase; Provisional	99.92
PRK08636	403	aspartate aminotransferase; Provisional	99.92
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.92
PLN02656	409	tyrosine transaminase	99.92
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.92
PRK08363	398	alanine aminotransferase; Validated	99.92
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.92
PTZ00377	481	alanine aminotransferase; Provisional	99.92
PTZ00433	412	tyrosine aminotransferase; Provisional	99.92
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.92
PRK07568	397	aspartate aminotransferase; Provisional	99.92
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.92
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.92
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.92
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.92
PRK07550	386	hypothetical protein; Provisional	99.92
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.92
PRK09265	404	aminotransferase AlaT; Validated	99.92
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.91
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.91
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.91
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.91
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.91
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.91
PRK07337	388	aminotransferase; Validated	99.91
PRK06234	400	methionine gamma-lyase; Provisional	99.91
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.91
PRK06855	433	aminotransferase; Validated	99.91
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.91
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.91
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.91
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.91
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.91
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.91
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.91
PRK03321	352	putative aminotransferase; Provisional	99.91
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.91
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.91
PRK06767	386	methionine gamma-lyase; Provisional	99.91
PLN02409	401	serine--glyoxylate aminotransaminase	99.9
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.9
PRK14012	404	cysteine desulfurase; Provisional	99.9
PLN02672	1082	methionine S-methyltransferase	99.9
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.9
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.9
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.9
PLN02242	418	methionine gamma-lyase	99.9
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.9
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.9
PRK09105	370	putative aminotransferase; Provisional	99.9
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.9
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.89
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.89
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.89
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.89
PRK05839	374	hypothetical protein; Provisional	99.89
PLN02651	364	cysteine desulfurase	99.89
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.89
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.89
PRK05968	389	hypothetical protein; Provisional	99.89
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.89
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.89
PRK06836	394	aspartate aminotransferase; Provisional	99.89
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.89
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.89
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.89
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.89
PRK08249	398	cystathionine gamma-synthase; Provisional	99.88
PRK06460	376	hypothetical protein; Provisional	99.88
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.88
PLN02231	534	alanine transaminase	99.88
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.88
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.88
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.88
PRK08574	385	cystathionine gamma-synthase; Provisional	99.88
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.88
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.88
PRK07503	403	methionine gamma-lyase; Provisional	99.88
PTZ00376	404	aspartate aminotransferase; Provisional	99.88
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.87
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.87
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.87
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.87
PRK07908	349	hypothetical protein; Provisional	99.87
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.87
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.87
PLN02509	464	cystathionine beta-lyase	99.87
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	99.87
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.87
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.86
PRK02769	380	histidine decarboxylase; Provisional	99.86
PLN02397	423	aspartate transaminase	99.86
PRK08354	311	putative aminotransferase; Provisional	99.86
PLN02880	490	tyrosine decarboxylase	99.86
PRK07811	388	cystathionine gamma-synthase; Provisional	99.86
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.86
PRK08114	395	cystathionine beta-lyase; Provisional	99.86
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.85
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.85
PLN02590	539	probable tyrosine decarboxylase	99.85
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.85
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.85
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.85
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.85
PLN03032	374	serine decarboxylase; Provisional	99.85
PLN02271	586	serine hydroxymethyltransferase	99.85
PRK08776	405	cystathionine gamma-synthase; Provisional	99.85
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.84
PRK07050	394	cystathionine beta-lyase; Provisional	99.84
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.84
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.84
PRK07049	427	methionine gamma-lyase; Validated	99.84
PRK09028	394	cystathionine beta-lyase; Provisional	99.84
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK08861	388	cystathionine gamma-synthase; Provisional	99.84
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.83
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.83
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.83
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.83
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.83
PRK05939	397	hypothetical protein; Provisional	99.83
PRK08637	388	hypothetical protein; Provisional	99.82
PRK08045	386	cystathionine gamma-synthase; Provisional	99.82
PLN02724	805	Molybdenum cofactor sulfurase	99.82
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.82
PRK09275	527	aspartate aminotransferase; Provisional	99.82
PRK08064	390	cystathionine beta-lyase; Provisional	99.82
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
PRK07671	377	cystathionine beta-lyase; Provisional	99.81
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.81
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.81
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.81
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
PLN02368	407	alanine transaminase	99.81
PRK07582	366	cystathionine gamma-lyase; Validated	99.8
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.8
PRK05967	395	cystathionine beta-lyase; Provisional	99.8
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.8
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.8
PLN02263	470	serine decarboxylase	99.8
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.8
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.8
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.79
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.78
PRK03080	378	phosphoserine aminotransferase; Provisional	99.78
PRK04311	464	selenocysteine synthase; Provisional	99.78
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.78
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.77
PRK15029	755	arginine decarboxylase; Provisional	99.77
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.76
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.76
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.75
PRK13237	460	tyrosine phenol-lyase; Provisional	99.75
PRK06434	384	cystathionine gamma-lyase; Validated	99.75
PRK12566	954	glycine dehydrogenase; Provisional	99.74
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.74
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.74
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.73
PRK05367	954	glycine dehydrogenase; Provisional	99.72
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.71
PRK15400	714	lysine decarboxylase CadA; Provisional	99.69
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.68
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.68
PRK13578	720	ornithine decarboxylase; Provisional	99.68
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.68
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.67
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.67
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.67
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.67
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.66
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.64
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.64
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.64
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.56
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.55
PLN02452	365	phosphoserine transaminase	99.55
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.52
PRK05367	954	glycine dehydrogenase; Provisional	99.49
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.48
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.47
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.4
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.39
PRK12462	364	phosphoserine aminotransferase; Provisional	99.39
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.38
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.31
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.28
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.23
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.2
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.18
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.18
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.11
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.09
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.09
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.08
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.02
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.02
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.01
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.92
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.85
PRK12566	954	glycine dehydrogenase; Provisional	98.78
COG4100	416	Cystathionine beta-lyase family protein involved i	98.62
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.47
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.34
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.04
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.42
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.27
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.24
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.19
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.09
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	95.42
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	86.41
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	85.37
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	81.44

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-92  Score=663.01  Aligned_cols=443  Identities=54%  Similarity=0.914  Sum_probs=420.9

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhhcCCCCCCccccccc-ccCCCccccCCCCeEEECCeeEEEe
Q 011567           36 GHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEM-RCEPPVLESAAGPHTIISGKEVVNF  114 (483)
Q Consensus        36 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~g~~~~~~G~~~id~  114 (483)
                      +|+++|++|+++++|++++|+|+.+..+||++|+|+|+++|+|+||+|++++++ ...++++++..++++++||++|+||
T Consensus        20 ~~~~iE~lLi~~~i~~~~rk~~~~~~~~lt~~eideLiedw~PEPLV~~~~~~~~~~~~~v~e~~~~~~~~i~G~~~~N~   99 (467)
T KOG1358|consen   20 LHTIIETLLIVLVIILLLRKSYKIPVRPLTEQEIDELIEDWEPEPLVPPVPEDHPVLNTPVLESVMLPHVTIDGKDVLNF   99 (467)
T ss_pred             HHHHHHHHHHHHhhheeeeccCCCcccCCCHHHHHHHHhcCCCCCCCCCCcccccccCCcccccccCCceEecCceeecc
Confidence            799999999999999999999999888999999999999999999999999765 4678899999999999999999999


Q ss_pred             ecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCc
Q 011567          115 ASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD  194 (483)
Q Consensus       115 ~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gd  194 (483)
                      +|+||||+..++++++.+...+++||+|+||||+||||.|+|.++|++||+|+|+|++++|+.|++|+.+++++|+++||
T Consensus       100 aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGD  179 (467)
T KOG1358|consen  100 ASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGD  179 (467)
T ss_pred             cchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhcc---CccEEEEEecccCCCCCccChHHHHHHH
Q 011567          195 LIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAK---KLRRYIVVEAVYQNSGQIAPLDELIRLK  271 (483)
Q Consensus       195 iI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~---~~~~~iv~e~v~~~~G~i~~L~~l~~l~  271 (483)
                      +|++|+.+++++++|++++++++.+|+||||++||+++.+...++.|.+   .++++|++|++|.|+|+++||++|++++
T Consensus       180 Ii~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk  259 (467)
T KOG1358|consen  180 IIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLK  259 (467)
T ss_pred             EEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHH
Confidence            9999999999999999999999999999999999999987765554433   4599999999999999999999999999


Q ss_pred             HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecCCCcHH
Q 011567          272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPY  351 (483)
Q Consensus       272 ~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~  351 (483)
                      .||++++|+||++++|++|++|||+++|+|+++.++|++++||..++++.||||+|+..+++|+|.++.+|+||+++||+
T Consensus       260 ~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~  339 (467)
T KOG1358|consen  260 NKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIADHQRLSGSGYCFSASLPPY  339 (467)
T ss_pred             hhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccCceeecceeeEeeeeccccceeeeccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDG  431 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~G  431 (483)
                      .+.+|..++++++.++++.+.+++....++..|+...++.+.+++.||++++.+..+.++.+.+...++++++.|+.+ |
T Consensus       340 la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~  418 (467)
T KOG1358|consen  340 LAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-G  418 (467)
T ss_pred             hhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-c
Confidence            999999999999999999999999999999999988789999999999999999998888888889999999999988 8


Q ss_pred             EEEEeeccc-ccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          432 VFVVTSKRS-MLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       432 v~v~~~~~~-~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ++++...+. ..+++..||+||||+++.+|++|++++++.|++...+++
T Consensus       419 ~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~~  467 (467)
T KOG1358|consen  419 VLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAVL  467 (467)
T ss_pred             ceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhhC
Confidence            999888764 566777889999999999999999999999999887653

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=4.3e-86  Score=682.03  Aligned_cols=481  Identities=82%  Similarity=1.266  Sum_probs=439.4

Q ss_pred             ChhhHHHHHHhHHHHHHHHhcCCCCcceEEEEEeehHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhhcCCCC
Q 011567            1 MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPES   80 (483)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~~~~~~   80 (483)
                      |++++.++++..++||..+++.|.++|||||.+..+|+++|++|++|++|++++|+|++++.+||++|+|+||+||+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~   80 (481)
T PLN02822          1 MALNVLNLVNAALERVTMLLEAPLARAVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPPKRPLTEKEIDELCDEWTPEP   80 (481)
T ss_pred             CchhHHHHHHHHHHHHHHHhcccccceeEeecCCCchhHHHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHHHHhcCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999998777999999999999999999


Q ss_pred             CCcccccccccCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHH
Q 011567           81 LIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE  160 (483)
Q Consensus        81 ~~~~~~~~~~~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~  160 (483)
                      |+|+.++.+....+++++++|++++++|++||||++++|+|+.+||++++++.+++++||+|+|+||++||+.+.+.+||
T Consensus        81 l~~~~~~~~~~~~~~~~~~~G~~i~~~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Le  160 (481)
T PLN02822         81 LIPPITEEMRPEPPVLESAAGPHTIINGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCE  160 (481)
T ss_pred             CCCCCchhccccCCceecCCCCeEEECCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHH
Confidence            99998877655677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhh
Q 011567          161 ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK  240 (483)
Q Consensus       161 ~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~  240 (483)
                      ++||+++|.+++++|++|+.++.++++++++|+|+|+++..+|++++.++.+++.++++++|||+++++..+++...+.+
T Consensus       161 e~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~  240 (481)
T PLN02822        161 TKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENK  240 (481)
T ss_pred             HHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987654322


Q ss_pred             hccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC
Q 011567          241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT  320 (483)
Q Consensus       241 ~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~  320 (483)
                      +.+.++++|++|++++++|.+.||++|+++|++||++||+||+|++|++|++|+|+++|+++.+.++||+++||||++|+
T Consensus       241 ~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~  320 (481)
T PLN02822        241 RKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT  320 (481)
T ss_pred             ccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh
Confidence            12234589999999999999999999999999999999999999999999999999999999767789999999999999


Q ss_pred             CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCE
Q 011567          321 EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI  400 (483)
Q Consensus       321 ~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i  400 (483)
                      .|||++++++++++++....+++|++++||+.+++++++|+.+++.++++++++++++++++.|++.+|+++..++.+|+
T Consensus       321 ~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi  400 (481)
T PLN02822        321 EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPI  400 (481)
T ss_pred             CCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCE
Confidence            99999999999999998889999999999999999999999887767899999999999999999877888877778999


Q ss_pred             EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       401 ~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +++.+++..+....+....+++++++++++||++.+..++..++...++.+|+++++.+|++||++++++|++++.+++.
T Consensus       401 ~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~  480 (481)
T PLN02822        401 VFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK  480 (481)
T ss_pred             EEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999643222222445577899998867799999987776655544567999999999999999999999999999875


Q ss_pred             c
Q 011567          481 D  481 (483)
Q Consensus       481 ~  481 (483)
                      +
T Consensus       481 ~  481 (481)
T PLN02822        481 K  481 (481)
T ss_pred             C
Confidence            3

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=100.00  E-value=9.8e-68  Score=519.45  Aligned_cols=362  Identities=38%  Similarity=0.660  Sum_probs=334.9

Q ss_pred             cccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEe
Q 011567           96 LESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY  175 (483)
Q Consensus        96 i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~  175 (483)
                      +.+..+..+..+|++++||+||||||++.||++++++.+++++||.|+|++|.++|+.+.|.+||++||+|+|.|++++|
T Consensus        26 ~~~~~~~~~~~~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f  105 (388)
T COG0156          26 LDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLF  105 (388)
T ss_pred             ccccCCcceecCCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            44444666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      +||+.||.+++.++++++|+|+.|+..|.|+++|+++++++++.|+|||+++||+.|++....   .+ ++++|++|++|
T Consensus       106 ~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~HnD~~~Le~~l~~~~~~---~~-~~~~IvtegVf  181 (388)
T COG0156         106 SSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEAREN---GA-RRKLIVTEGVF  181 (388)
T ss_pred             cccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecCCCHHHHHHHHHhhhcc---CC-CceEEEEeccc
Confidence            999999999999999999999999999999999999999999999999999999999885422   12 47999999999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQ  335 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~  335 (483)
                      +|+|+++||++|++||+|||++|++||+|+.|++|++|+|+++++|+.+.++||+++||+|+||+.|||++++..+++++
T Consensus       182 SMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L  261 (388)
T COG0156         182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYL  261 (388)
T ss_pred             cCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +..+.+|+||+++||..++++.++++.+++.++.+++++++..++++.++.. ++.+. +..+||+++.+.        +
T Consensus       262 ~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~-~s~s~I~pv~~g--------d  331 (388)
T COG0156         262 RNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL-GLVLL-PSESPIIPVILG--------D  331 (388)
T ss_pred             HHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCeeeeEeC--------C
Confidence            9999999999999999999999999999998899999999999999777664 77664 458999999985        4


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..+.++...++++ ||++.+..+|++++..  ++||+++++.||++||+++++++.++
T Consensus       332 ~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gt--arlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         332 EERALEASRALLEE-GIYVSAIRPPTVPKGT--ARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             HHHHHHHHHHHHHC-CeeEeeecCCCCCCCc--ceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            45677888887776 9999999999986654  66999999999999999999998864

>PLN02955 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=3.7e-59  Score=468.67  Aligned_cols=346  Identities=23%  Similarity=0.377  Sum_probs=314.1

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      .+|+++||+|+||||+..||++++++.+++++||+|+|++|.++|+.+.|.+||++||+|+|.|++++|+||+.||.+++
T Consensus       100 ~~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i  179 (476)
T PLN02955        100 RFKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAM  179 (476)
T ss_pred             CCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh--------------ccCCcEEEEcCCchhHHHhHhhhc----CCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEE
Q 011567          187 PCF--------------CKKGDLIVADEGVHWGIQNGLYLS----RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       187 ~~~--------------~~~gdiI~~~~~~h~s~~~g~~~s----~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      +++              .+++|.|+.|..+|.|++.|++++    +.++..|+|||+++|+++|++...       .+++
T Consensus       180 ~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~-------~~~~  252 (476)
T PLN02955        180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCKM-------KRKV  252 (476)
T ss_pred             HHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCCHHHHHHHHHhCCC-------CceE
Confidence            887              367889999999999999999998    578899999999999999987543       2689


Q ss_pred             EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeecc
Q 011567          249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGS  328 (483)
Q Consensus       249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~  328 (483)
                      |++|++|++.|++.||++|+++|++||++||+||+|++|++|++|+|.++++|+. .++||+++||+|++|+.|||++++
T Consensus       253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~GGfi~gs  331 (476)
T PLN02955        253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHGGFIACS  331 (476)
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccCceeecH
Confidence            9999999999999999999999999999999999999999999999999999997 678999999999999999999999


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      ++++++++..+.+++|++++||..+++++++++.+..++..+++++++.++|++.+    |+++    .+||+.+.+.  
T Consensus       332 ~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~----G~~~----~sPI~pI~ig--  401 (476)
T PLN02955        332 KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS----GVDI----SSPIISLVVG--  401 (476)
T ss_pred             HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc----CCCC----CCCEEEEEeC--
Confidence            99999999999999999999999999999999999877788999999999999842    5543    5899999984  


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                            ++....++++++++ +||++.+..||+++...  .+|||++++.||++||++++++|.++...+.
T Consensus       402 ------~~~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~--~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~  463 (476)
T PLN02955        402 ------NQEKALKASRYLLK-SGFHVMAIRPPTVPPNS--CRLRVTLSAAHTTEDVKKLITALSSCLDFDN  463 (476)
T ss_pred             ------CHHHHHHHHHHHHH-CCCEEEEECCCCCCCCC--ceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence                  34456677887665 59999999999984432  4599999999999999999999998876543

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-56  Score=405.19  Aligned_cols=361  Identities=32%  Similarity=0.542  Sum_probs=331.4

Q ss_pred             CCccccCCCCeEEECC--eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC
Q 011567           93 PPVLESAAGPHTIISG--KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP  170 (483)
Q Consensus        93 ~~~i~~~~g~~~~~~G--~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e  170 (483)
                      ..++.+.+|+.+.++|  |++|||+.|||||++.||+|.+|..+++++||.|..+.|.++|+.+.|..||.+||+|.+.|
T Consensus        49 erVi~s~q~p~i~v~G~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rE  128 (417)
T KOG1359|consen   49 ERVITSRQGPTIQVKGSDKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRE  128 (417)
T ss_pred             eeEEeecccceEEEeccccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCC
Confidence            5678899999999887  58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++++|.+|+.||..++.++..+.|-|+.|+..|.|+.+|+++..    .+.|-|+-++|..+.+..+.      ++++|+
T Consensus       129 D~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLck----ry~h~dv~~l~~~l~~a~k~------r~klv~  198 (417)
T KOG1359|consen  129 DTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK----RYRHVDVFDLEHCLISACKM------RLKLVV  198 (417)
T ss_pred             ceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHh----hhccchhHHHHHHHHHhhhh------eEEEEE
Confidence            99999999999999999999999999999999999999999876    67788999999888765443      589999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~  329 (483)
                      ++++|+++|++.||++|.+|++|||+++++||+|+-|.+|.||+|..|.+|+. .++||+.+|++|++| ..|||..|++
T Consensus       199 TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm-~~vdiinsTLgKAlGga~GGyttgp~  277 (417)
T KOG1359|consen  199 TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVM-GDVDIINSTLGKALGGASGGYTTGPK  277 (417)
T ss_pred             ecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCC-CcceehhhhhhhhhcCCCCCCccCCh
Confidence            99999999999999999999999999999999999999999999999999986 789999999999998 6799999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      .+++.++..+.+|.||.++||.....+.++++.+-...+.+.+.+.+.+++++.+.. .|+.+.+. ..||.++.+.   
T Consensus       278 ~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~-aGftIsg~-~hPI~pv~lG---  352 (417)
T KOG1359|consen  278 PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEA-AGFTISGA-SHPICPVMLG---  352 (417)
T ss_pred             hHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-cCceecCC-CCCccceecc---
Confidence            999999999999999999999999999999998877777899999999999999876 59998865 6899999884   


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                           +.+++.++++++|+. |+++....||.+++..  ..||+.+++.||+||||++++++.++.+.
T Consensus       353 -----da~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gk--ariRVqiSAaHt~edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  353 -----DARLASKMADELLKR-GIYVIGFSYPVVPKGK--ARIRVQISAAHTEEDIDRLIEAFSEVGRF  412 (417)
T ss_pred             -----cHHHHHHHHHHHHhc-CceEEeecCCcCCCCc--eEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence                 556777899998875 9999999999885442  34999999999999999999999988754

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=5.3e-53  Score=396.31  Aligned_cols=351  Identities=26%  Similarity=0.460  Sum_probs=326.1

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~  188 (483)
                      +++--+|||+|||++.||+|.+|+.+++++||.|++|.|.+.|+...|.+||+.||++.+.+.+++|+|++-||.+.+-.
T Consensus       171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLft  250 (570)
T KOG1360|consen  171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFT  250 (570)
T ss_pred             CceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          189 FCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       189 ~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      +.+  +|-+|+.|+..|.|++.|++-++.+-..|+|||+++|+++|++....      ..++|..|.+++++|.++||++
T Consensus       251 Lak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHND~~hL~~lL~~~~~s------vPKivAFEtVhSM~Gavcplee  324 (570)
T KOG1360|consen  251 LAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKS------VPKIVAFETVHSMDGAVCPLEE  324 (570)
T ss_pred             HHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccCCHHHHHHHHHhCCCC------CCceEEEeeeeccCCCcCCHHH
Confidence            765  78999999999999999999999999999999999999999986554      5789999999999999999999


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecC
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA  346 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~  346 (483)
                      |.++++|||.+-++||+|..|.+|++|.|..|+-|+- ..+||+.||++|+||..|||++++..++|.+|....+|+|++
T Consensus       325 lcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm-~kvDiIsGTLgKafGcVGGYIAat~~LvDmiRSyAaGFIFTT  403 (570)
T KOG1360|consen  325 LCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVM-HKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTT  403 (570)
T ss_pred             HHHHHHHhCceeeeehhhhhccccCCCCCccccCCcc-hhhhhcccchhhhcccccceehhhhhHHHHHHHhcCceEEec
Confidence            9999999999999999999999999999999999985 789999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          347 SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       347 ~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                      ++||+.++.|+++++++...  ..++..-+++.+++++.|.++ |+++.+. .+.|+++++.        +..+..++++
T Consensus       404 SLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~-pSHIiPv~vg--------da~l~~~~sd  473 (570)
T KOG1360|consen  404 SLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPN-PSHIIPVRVG--------DAALAKQASD  473 (570)
T ss_pred             CCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCcccCC-Ccceeeeecc--------CHHHHHHHHH
Confidence            99999999999999999754  578888899999999999997 9999865 7899999985        3445667888


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .++.++||++....||++....  ..|||.|+..||++.++.+++.+..++.++
T Consensus       474 ~Li~~h~iYvQaINyPTV~rG~--E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  474 ILISKHNIYVQAINYPTVARGT--ERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             HHHHhcCeEEEeccCCcccccc--eeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999985543  459999999999999999999999998876

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=100.00  E-value=5.8e-51  Score=411.96  Aligned_cols=368  Identities=42%  Similarity=0.701  Sum_probs=309.2

Q ss_pred             EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhcc
Q 011567          112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK  191 (483)
Q Consensus       112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~  191 (483)
                      |||+|+||||+..||++++++.+++++||+|+|++|.+||+.+.+.+||+++|+++|.++++++++|+.|+.+++.++++
T Consensus         1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~   80 (392)
T PLN03227          1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK   80 (392)
T ss_pred             CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhh---h-ccCccEEEEEecccCCCCCccChHHH
Q 011567          192 KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK---R-AKKLRRYIVVEAVYQNSGQIAPLDEL  267 (483)
Q Consensus       192 ~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~---~-~~~~~~~iv~e~v~~~~G~i~~L~~l  267 (483)
                      +||.|++++..|.++..++.+++.++++++|+|++++++.++.......   + ...++++|++|++++++|.+.|+++|
T Consensus        81 ~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i  160 (392)
T PLN03227         81 RGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKEL  160 (392)
T ss_pred             CCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHH
Confidence            9999999999999999999999999999999999999988876543210   0 11247899999999999999999999


Q ss_pred             HHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecC
Q 011567          268 IRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA  346 (483)
Q Consensus       268 ~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~  346 (483)
                      +++|++||+++|+||+|++|.+|++|+|..+++|+.| .++||++.|++|++|+.||++++++++++.++....+++|++
T Consensus       161 ~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~  240 (392)
T PLN03227        161 VALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA  240 (392)
T ss_pred             HHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccccC
Confidence            9999999999999999999999999999999999975 678999999999999999999999999998887778889999


Q ss_pred             CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce----------eecCCCCCEEEEEecCCCCCc-hhh
Q 011567          347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS----------IASNPESPIVFLILEKSTGSM-KND  415 (483)
Q Consensus       347 ~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~----------i~~~~~~~i~~l~l~~~~~~~-~~~  415 (483)
                      ++||+.++++.++++.+.+.+++++++++++++|++.|++. +++          +.....+|++.+.+.+..... ..+
T Consensus       241 ~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~  319 (392)
T PLN03227        241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDE  319 (392)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhh
Confidence            88999888888888765556679999999999999999752 332          122346889999985421100 001


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeeccccc--ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSML--DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~--~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      .....++++.+++ +|+++.+......  ....+|..||+++++.||+|||++++++|++++++++-|
T Consensus       320 ~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~~~  386 (392)
T PLN03227        320 TLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAILCK  386 (392)
T ss_pred             hhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            1234577877665 5998865321110  011134569999999999999999999999999887643

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=100.00  E-value=1.2e-49  Score=405.84  Aligned_cols=353  Identities=28%  Similarity=0.500  Sum_probs=308.2

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      +|++++||+|+||||++.||++++|+.+++++||.+++++|..+|+.+.+.+|+++||+++|.++++++++|++|+..++
T Consensus        43 ~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai  122 (402)
T TIGR01821        43 GAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATL  122 (402)
T ss_pred             CCeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          187 PCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       187 ~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      +.+.+  ++++|+.+..+|.++..++..++.++..++|+|+++++++++.....      .+++|++|++++++|.+.|+
T Consensus       123 ~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------~~~~v~~e~~~~~~G~~~~l  196 (402)
T TIGR01821       123 ATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPN------RPKIIAFESVYSMDGDIAPI  196 (402)
T ss_pred             HHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECCCCHHHHHHHHHhccCC------CCeEEEEcCCCCCCCCccCH
Confidence            88765  78999999999999999999999988889999999999998754321      36899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      ++|+++|++||+++|+||+|++|++|++|.|+.+++++. +++|++++|++|++|..|||+++++++++.++....++.|
T Consensus       197 ~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~  275 (402)
T TIGR01821       197 EEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLM-HRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIF  275 (402)
T ss_pred             HHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCC-CCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCcee
Confidence            999999999999999999999999999888887777764 4569999999999999999999999999999877777888


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                      +++.+|..++++.++++.+++.+.+.++++++.+++++.|+++ |+++.. +.++++.+.++.        .....++++
T Consensus       276 t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~i~~i~~~~--------~~~a~~~~~  345 (402)
T TIGR01821       276 TTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIPVIP-NPSHIVPVIIGD--------AALCKKVSD  345 (402)
T ss_pred             cCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEeCC--------HHHHHHHHH
Confidence            8889999999999999998876667778889999999999886 777654 367888877632        123456777


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+++++||++.+..+|.++..  ...|||++++.+|++|+++++++|+++++++
T Consensus       346 ~L~~~~Gi~v~~~~~p~~~~g--~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       346 LLLNKHGIYVQPINYPTVPRG--TERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             HHHhcCCEEEEeECCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            766667999998877765322  1459999999999999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02483 serine palmitoyltransferase

Probab=100.00  E-value=1e-49  Score=412.34  Aligned_cols=361  Identities=27%  Similarity=0.479  Sum_probs=311.6

Q ss_pred             CCeeEEEeecCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhh
Q 011567          107 SGKEVVNFASANYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA  185 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~a  185 (483)
                      +++++|||+|+||||+.. ++...+++.+++++||+++|++|..||+.+.+.++|+++|+++|.++++++++|+.++..+
T Consensus        98 ~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~  177 (489)
T PLN02483         98 KTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTI  177 (489)
T ss_pred             CCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence            468999999999999974 6788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhh-hhh--ccCccEEEEEecccCCCCCcc
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTAD-NKR--AKKLRRYIVVEAVYQNSGQIA  262 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~-~~~--~~~~~~~iv~e~v~~~~G~i~  262 (483)
                      ++++.++||.|++++.+|.++..+++.+|.+++.++|+|+++|++.+++.... .++  .|.++.+|++|++++++|.+.
T Consensus       178 i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~  257 (489)
T PLN02483        178 IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC  257 (489)
T ss_pred             HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999988753211 011  122356899999999999999


Q ss_pred             ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCce
Q 011567          263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGY  342 (483)
Q Consensus       263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~  342 (483)
                      ++++|+++|++||++||+||+|++|.+|++|+|..+++++.+.++||+++|+||++|+.|||++++++++++++....++
T Consensus       258 ~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li~~l~~~~~~~  337 (489)
T PLN02483        258 KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAH  337 (489)
T ss_pred             CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999998877777


Q ss_pred             eecCCCcHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          343 VFSASLPPYLASAAITAIDVLEEN------PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       343 ~fs~~~~p~~~aaa~~al~~l~~~------~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                      .|+.+++|..++++.++++.+...      .+.+++++++.+++++.|+++ |+.+.++.++|++++.+..+        
T Consensus       338 ~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~--------  408 (489)
T PLN02483        338 LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNP--------  408 (489)
T ss_pred             cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCH--------
Confidence            788777888888888889877522      246788999999999999987 88877666788988887321        


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ....++++.+++ +||.+.+..++..+..  .+.+|+++++.+|++||++++++|+++++.+.
T Consensus       409 ~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~--~~~vRi~isa~~t~edId~~l~~L~~~~~~~~  468 (489)
T PLN02483        409 AKIPAFSRECLK-QNVAVVVVGFPATPLL--LARARICISASHSREDLIKALEVISEVGDLVG  468 (489)
T ss_pred             HHHHHHHHHHHH-CCcEEeeeCCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            234467877776 5999997666543211  24599999999999999999999999887654

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=2.9e-49  Score=403.31  Aligned_cols=353  Identities=28%  Similarity=0.471  Sum_probs=306.3

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      +|++++||+|++|||+..||+|++++.+++++||.++++++.++|+.+.+.+||++||+++|.+.+++++||++|+..++
T Consensus        43 ~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai  122 (406)
T PRK13393         43 GPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAAL  122 (406)
T ss_pred             CCccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence            35899999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             hhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          187 PCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       187 ~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      +++.+  ++|+|+++..+|.++..+++.++.++..++|+|++++++.++....+      ++++|++|++++++|.+.|+
T Consensus       123 ~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------~~~~v~~~~v~~~~G~~~~l  196 (406)
T PRK13393        123 STLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPH------RPKLVAFESVYSMDGDIAPI  196 (406)
T ss_pred             HHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHhccCC------CCEEEEEcCCCCCCCchhCH
Confidence            98765  78999999999999999999999999899999999999988754221      36899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      ++|.++|++||+++|+||+|+.|.+|++|.|+.+++++. +++||+++|++|++|..|||+++++++++.++....+|.|
T Consensus       197 ~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~-~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~~  275 (406)
T PRK13393        197 AEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLA-DRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIF  275 (406)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCC-CCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCcee
Confidence            999999999999999999999998999999888888876 4568999999999999999999999999998877777888


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                      +.+.+|..++++.++++.+++....+++++++.+++++.|+++ ++++. ++.++++.+.+.+        .....++.+
T Consensus       276 t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~~--------~~~~~~l~~  345 (406)
T PRK13393        276 TTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVGD--------PVLCKQISD  345 (406)
T ss_pred             cCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeCC--------HHHHHHHHH
Confidence            8888999999999999988765445677889999999999875 77655 3478888876632        123456777


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+++++||++.+..+|.++..  ...||+++++.+|++|+++++++|++++.++
T Consensus       346 ~L~~~~Gi~v~~~~~p~~p~g--~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        346 ELLDRYGIYVQPINYPTVPRG--TERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             HHHHhCCEEEEeECCCCCCCC--CceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            766656999998877655322  1359999999999999999999999987653

>PRK09064 5-aminolevulinate synthase; Validated

Probab=100.00  E-value=1.1e-48  Score=399.55  Aligned_cols=352  Identities=29%  Similarity=0.497  Sum_probs=305.9

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      |++++||+|+||||+..||++.+++.+++++++.+++++|..+|+.+.+.+|+++||+++|.++++++++|++|+..++.
T Consensus        45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~  124 (407)
T PRK09064         45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLS  124 (407)
T ss_pred             CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            58999999999999998999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChH
Q 011567          188 CFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLD  265 (483)
Q Consensus       188 ~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~  265 (483)
                      .+.+  ++++|+.+...|.++..++...+.++..++|+|+++|+++++....+      ++++|+++++++++|.+.|++
T Consensus       125 ~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~------~~~~v~~~~v~s~~G~~~~l~  198 (407)
T PRK09064        125 TLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPD------RPKLIAFESVYSMDGDIAPIA  198 (407)
T ss_pred             HHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECCCCHHHHHHHHHhccCC------CCeEEEEeCCCCCCccccCHH
Confidence            7754  78899999999999999999999998899999999999998754211      368999999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeec
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFS  345 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs  345 (483)
                      +|+++|++||++||+||+|+.|.+|++|.|+.++.++. +++|++++||||++|+.|||+++++++++.++....++.|+
T Consensus       199 ~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t  277 (407)
T PRK09064        199 EICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLM-DRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFT  277 (407)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCC-CCCeEEEEecchhhhccCceEecCHHHHHHHHHhCcccccc
Confidence            99999999999999999999888899998887777764 45699999999999999999999999999888776778888


Q ss_pred             CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      ++.+|..++++.++++.+++.+..+++++++++++++.|+++ |+++.. +.++++.+.+++        .....++.+.
T Consensus       278 ~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~--------~~~~~~l~~~  347 (407)
T PRK09064        278 TSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGD--------PEKCKKASDM  347 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCC--------HHHHHHHHHH
Confidence            888999999999999999876666788999999999999886 777654 467888877632        1234567777


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +++++||++.+..+|.++..  ...|||++++.+|++|+++++++|+++++++
T Consensus       348 L~~~~gi~v~~~~~p~~~~~--~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        348 LLEEHGIYVQPINYPTVPRG--TERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             HHHhCCEEEeeECCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            76667999998776654211  1359999999999999999999999988764

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-50  Score=384.58  Aligned_cols=356  Identities=30%  Similarity=0.494  Sum_probs=313.6

Q ss_pred             eEEEeecCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567          110 EVVNFASANYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       110 ~~id~~s~~~lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~  188 (483)
                      ++||++|+||||+.. +-.-.+++.+.+++||...|+++...|+.+.|.++|+..|+|+|.+++++|+.|+.+|...+++
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~  216 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPS  216 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcce
Confidence            799999999999974 4566788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhh-hhh--ccCccEEEEEecccCCCCCccChH
Q 011567          189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTAD-NKR--AKKLRRYIVVEAVYQNSGQIAPLD  265 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~-~~~--~~~~~~~iv~e~v~~~~G~i~~L~  265 (483)
                      +.+++..|+.|+..|.++..|++++|++++.|+||||++||++|++.-.. .++  .|-+..+|++|+++++.|.++.|+
T Consensus       217 l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp  296 (519)
T KOG1357|consen  217 LLGKGSLIISDELNHASLITGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLP  296 (519)
T ss_pred             eecCCcceeeccccchheeccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccH
Confidence            99999999999999999999999999999999999999999999875433 222  233567899999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeec
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFS  345 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs  345 (483)
                      +++++|+||+++|++||+||.|.+|++|+|.+++++++|.++||+++++.|++|+.|||++|+++++++++..+...+|.
T Consensus       297 ~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~GGyiagsk~lid~lrt~s~~~~ya  376 (519)
T KOG1357|consen  297 EVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYA  376 (519)
T ss_pred             HHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccccceecCcHHHHhhhccCCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 011567          346 ASLPPYLASAAITAIDVLEEN------PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL  419 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~------~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~  419 (483)
                      ++++|..++..+.+++.+...      .+..+++.+|..+++..|++. |+-+.++.++|++++.+-.+..        .
T Consensus       377 t~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k--------~  447 (519)
T KOG1357|consen  377 TSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAK--------I  447 (519)
T ss_pred             ccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCccc--------c
Confidence            999999999999999988742      368899999999999999885 9999999999999988754321        2


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+.+.||++ ++.+....+|..+-  .....|+|.++.||.|+++++++.+.+.-..
T Consensus       448 ~~f~r~~l~~-nigvVvvgfPatpl--~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~  502 (519)
T KOG1357|consen  448 VAFSREMLER-NIGVVVVGFPATPL--LESRARFCLSASHTKEDLDRALEVIDRVGDE  502 (519)
T ss_pred             cHHHHHHHhc-CceEEEEeCCCchH--HHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence            2455566664 67776666653100  0134899999999999999999999877543

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=1.8e-46  Score=383.38  Aligned_cols=353  Identities=26%  Similarity=0.470  Sum_probs=304.2

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      +|+++++|+|+||+|+..||.+++++.+++++++.++++++.+||+.+.+.+|+++||+++|.++++++++|++|+..++
T Consensus        44 ~~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i  123 (410)
T PRK13392         44 GPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAAL  123 (410)
T ss_pred             CCceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             hhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          187 PCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       187 ~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      ..+..  ++++|+.+..+|+++..++...|.++..++++|++++++.+++...+      ++++|+++++++++|.+.|+
T Consensus       124 ~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------~t~~v~i~~~~n~tG~~~~l  197 (410)
T PRK13392        124 STLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPD------RPKLIAFESVYSMDGDIAPI  197 (410)
T ss_pred             HHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhccCC------CCEEEEEeCCCCCCcccccH
Confidence            87754  78999999999999999999999998889999999999888754321      47899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      ++|.++|++||+++|+||+|+.|.+|++|+|+.++.++. +++|++++|++|++|..|||+++++++++.++....+|.|
T Consensus       198 ~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~  276 (410)
T PRK13392        198 EAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLM-DRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIF  276 (410)
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCC-CCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhc
Confidence            999999999999999999999888888888877666654 4568999999999999999999999999988877777888


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                      +.+.||..++++.++|+.++......++++++.+++++.|+++ |+++. ++.++++.+.++.        .....++++
T Consensus       277 s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~--------~~~~~~~~~  346 (410)
T PRK13392        277 TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGD--------PTLCKAISD  346 (410)
T ss_pred             cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC--------HHHHHHHHH
Confidence            8888899899999999988766667788899999999999886 87765 3467887776632        123456787


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++++++||++.+..++.++..  ...||+++++.+|++|+++++++|+++.+++
T Consensus       347 ~L~~~~GI~v~~~~~p~~~~~--~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        347 RLMSEHGIYIQPINYPTVPRG--TERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             HHHHhCCEEEeeeCCCCCCCC--CceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            776667999998777654321  1359999999999999999999999987653

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-47  Score=364.31  Aligned_cols=343  Identities=22%  Similarity=0.325  Sum_probs=285.4

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.++| .+||+||||.++   +.||| .||.+++++++|+++....|   +.+  +.+...+|.++|++..+
T Consensus        25 ~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH-~hP~iv~al~~Q~~kl~h~s---n~~--~~~~~~~la~~L~~~s~   98 (404)
T COG4992          25 PVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGH-CHPALVEALKEQAEKLWHVS---NLF--YNEPQAELAEKLVELSP   98 (404)
T ss_pred             ceeEEeccccEEECCCCCEeeeeccceeeeccCC-CCHHHHHHHHHHHHHhhhcc---ccc--CChHHHHHHHHHHhhCc
Confidence            4678999999999 899999999998   89999 89999999999999964422   223  45788999999999997


Q ss_pred             -CCCEEEecccHHHHHhhhhh---hcc---CCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHHHH
Q 011567          169 -TPDSILYSYGLSTMFSAIPC---FCK---KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDSLR  229 (483)
Q Consensus       169 -~e~~i~~~sG~~a~~~ai~~---~~~---~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~Le  229 (483)
                       .+.++++|||+|||++|++.   +++   +.++|.+.+++|+.+...+.+++-            .+..+++||+++++
T Consensus        99 ~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~  178 (404)
T COG4992          99 FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALE  178 (404)
T ss_pred             cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHH
Confidence             88888999999999999864   444   668999999999988877766553            34678899999999


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCC
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPV  304 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~  304 (483)
                      +.+.+          .+++|++||++..+|.+.|    |+++++||++||++||+||+|++  +||||+.++ +|+|+.|
T Consensus       179 ~ai~~----------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG--~GRTGk~fA~e~~gV~P  246 (404)
T COG4992         179 AAIDE----------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG--LGRTGKLFAYEHYGVEP  246 (404)
T ss_pred             HHhcc----------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccC--CCccchHHHHHHhCCCC
Confidence            99977          2899999999999998887    99999999999999999999997  899999775 9999999


Q ss_pred             CceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          305 DKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       305 ~~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                         ||+  +++|+||  |||    ++.++.+.+.+....|+.+|++  ||++|+++.++++.+.++ ++.++.++.+++|
T Consensus       247 ---DI~--tlaK~Lg--GG~PigA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~e-~ll~~v~~~g~~~  316 (404)
T COG4992         247 ---DIL--TLAKALG--GGFPIGAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLEE-GLLENVREKGEYL  316 (404)
T ss_pred             ---CEE--Eeecccc--CCccceeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcch-hHHHHHHHHHHHH
Confidence               898  7999998  554    4556777777888888888876  899999999999999874 5999999999999


Q ss_pred             HHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC
Q 011567          381 RTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA  457 (483)
Q Consensus       381 ~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~  457 (483)
                      ++.|.++. .+++.  ..+.+.++.+.+..+.        .+.+++..+. +.|+++.+...         .-||+.|++
T Consensus       317 ~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~-~~gvL~~~a~~---------~ViR~~PpL  378 (404)
T COG4992         317 LQRLRELKRRYPLVKEVRGRGLMIGIELKEPY--------RARDIVRALR-EEGVLVLPAGP---------NVIRFLPPL  378 (404)
T ss_pred             HHHHHHHhhcCCceeeeecceeEEEEEecCcc--------cHHHHHHHHH-HCCeEEecCCC---------CeEEecCCc
Confidence            99998863 33322  2456888999885431        2446777655 46999876543         239999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          458 AHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      .+|++|++++++++++++.....+
T Consensus       379 ~i~~eei~~~~~~l~~~l~~~~~~  402 (404)
T COG4992         379 VITEEEIDEALDALERALAAASAR  402 (404)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999876543

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=100.00  E-value=3.1e-44  Score=365.41  Aligned_cols=369  Identities=34%  Similarity=0.560  Sum_probs=310.8

Q ss_pred             CCCccccCCCCeEEE-CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC
Q 011567           92 EPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP  170 (483)
Q Consensus        92 ~~~~i~~~~g~~~~~-~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e  170 (483)
                      .+.++.++.|.+++. +|+++|||++++|||+..+|++++++.++++++|.++++++.+.|+.+.+.++|+.+|+++|.+
T Consensus        20 ~~~~~~~~~~~~~~~~~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~   99 (393)
T TIGR01822        20 SERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTE   99 (393)
T ss_pred             cccccccCCCceEEecCCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC
Confidence            366788899999996 9999999999999999889999999999999999999999988898899999999999999999


Q ss_pred             CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +++++++|++|+..++.++.++||.|+++...|.++..++.+.+.+...+.++|+++|++.+++....    +.++++|+
T Consensus       100 ~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~----~~~~~~v~  175 (393)
T TIGR01822       100 DTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAA----GARHRLIA  175 (393)
T ss_pred             cEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhhc----CCCceEEE
Confidence            99999999999999999999999999999999999999999888888888899999999988764211    11378999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~  329 (483)
                      ++++++++|.+.|+++|+++|++||++||+||+|++|.+|.+|++..+..++. .++|++++|+||+++ ..|||+++++
T Consensus       176 ~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~  254 (393)
T TIGR01822       176 TDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARK  254 (393)
T ss_pred             EeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCH
Confidence            99999999999999999999999999999999999998888887776666665 367999999999996 5689999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      ++++.++.....+.|+++.++..++++.++++.++..++.+++++++.+++++.|++. |+.+.. +.++++.+.+.+  
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~~~~--  330 (393)
T TIGR01822       255 EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA-GFDIKP-ADHPIIPVMLYD--  330 (393)
T ss_pred             HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCC--
Confidence            9999887766677888777888777888888887655678899999999999999875 777653 356777776532  


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                            .....++++.+++ +||.+....++..+..  ...+|++++..+|++||++++++|+++++++
T Consensus       331 ------~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~--~~~iRis~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       331 ------AVLAQRFARRLLE-EGIYVTGFFYPVVPKG--QARIRVQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             ------HHHHHHHHHHHHH-CCeeEeeeCCCCCCCC--CceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                  1234567777665 4999985544432211  1349999999999999999999999987653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-44  Score=355.38  Aligned_cols=359  Identities=21%  Similarity=0.287  Sum_probs=286.4

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| +|||+||||.++   ..+|| +||+|++|+.+|+++... .+.   .+.+.+...++.++|.+.
T Consensus        37 ~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH-~hP~Vv~Av~~q~~~~~h-~~~---~~~~~e~~v~~ae~L~~~  111 (447)
T COG0160          37 RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGH-NHPRVVEAVKRQLAKLNH-THT---RDLYYEPYVELAEKLTAL  111 (447)
T ss_pred             cCcceEEecccCEEEeCCCCEEEEcccCcchhccCC-CCHHHHHHHHHHHHHhhc-ccC---CcccchhHHHHHHHHHHh
Confidence            568899999999999 899999999996   57899 899999999999998642 222   222348889999999999


Q ss_pred             hCC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCC----
Q 011567          167 LGT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHN----  223 (483)
Q Consensus       167 ~g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~----  223 (483)
                      ++.   ..+++.+||++||++|++   .+++|..+|.++..||+.+..++.+++..             ++.+++.    
T Consensus       112 ~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr  191 (447)
T COG0160         112 APGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYR  191 (447)
T ss_pred             CCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCcccc
Confidence            874   345566999999999974   57899999999999999999998887643             2333322    


Q ss_pred             C-------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccc
Q 011567          224 D-------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSF  286 (483)
Q Consensus       224 d-------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~  286 (483)
                      +             .+.+|+.+....    ..+...+++++||+++.+|.+.|    |++++++|+|||+++|+||+|++
T Consensus       192 ~p~~~~~~~~~~~~~~~~e~~i~~~~----~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG  267 (447)
T COG0160         192 CPFGIGGEECGDDALEYIERALFDLE----VGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG  267 (447)
T ss_pred             CcccCchhhhhHHHHHHHHHHHHhhc----CCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            1             122333332221    23456999999999999999887    99999999999999999999987


Q ss_pred             ccccCCCCccc-cccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH
Q 011567          287 GVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       287 g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                        +|+||+.++ ||+|+.|   ||+  ||+|++|.  +-|.+++++++++ .....++++|.+  ||++|++++++|+.+
T Consensus       268 --~GRTG~~fa~E~~gv~P---Div--t~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~G--Npva~Aaa~AvL~vi  337 (447)
T COG0160         268 --FGRTGKMFAFEHFGVEP---DIV--TLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGG--NPVACAAALAVLDVI  337 (447)
T ss_pred             --CCccccchhhhhcCCCC---CEE--EecccccCCCceeEEeccHHhcc-cCCcccCCCCCc--CHHHHHHHHHHHHHH
Confidence              789998775 9999988   898  79999983  1255789999999 556666666655  899999999999999


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCC-CceeecC--CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec-c
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIH-GLSIASN--PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK-R  439 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i~~~--~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~-~  439 (483)
                      +++ .+.++..+.++++++.|.++. .+++.++  +.+.++.+.+..+..+.+.+.....+++++|+++ |+++.... +
T Consensus       338 e~e-~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~G~~  415 (447)
T COG0160         338 EEE-NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTCGPH  415 (447)
T ss_pred             HHc-cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEeccCCC
Confidence            876 599999999999999998753 3545444  3467899988766555556677888999998875 87775443 2


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .        +-|||.|+..+|++++|+++++|+++++++
T Consensus       416 ~--------nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         416 G--------NVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             C--------cEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            2        339999999999999999999999998865

>PRK07179 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=361.62  Aligned_cols=348  Identities=26%  Similarity=0.384  Sum_probs=294.8

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      .|+.++||++++|||+..||++++++.++++++|.+.++++.+.+..+.+.+||++||+++|.++++++++|++|+..++
T Consensus        52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l  131 (407)
T PRK07179         52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLL  131 (407)
T ss_pred             CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH
Confidence            46678999999999999999999999999999988777666677666789999999999999999999999999999999


Q ss_pred             hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          187 PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       187 ~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      +++.++||.|+++...|.++..++...+.++..++++|+++|++.+++.         ++++|+++++++++|.+.|+++
T Consensus       132 ~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---------~~~lV~v~~v~n~tG~i~pl~~  202 (407)
T PRK07179        132 QTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIERH---------GPGIIVVDSVYSTTGTIAPLAD  202 (407)
T ss_pred             HHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhc---------CCeEEEECCCCCCCCccccHHH
Confidence            9999999999999999999999999999999999999999999988642         2578999999999999999999


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecC
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA  346 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~  346 (483)
                      |+++|++||+++|+||+|++|.+|++|+|+.+++++. ..+|++++|++|++|+.+|++++++++++.++....++.|++
T Consensus       203 I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~~~  281 (407)
T PRK07179        203 IVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSS  281 (407)
T ss_pred             HHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeeeCC
Confidence            9999999999999999999999999998888778875 467999999999999889999999999888876665667887


Q ss_pred             CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       347 ~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                      +.++..++++.++++.+.+.++.+++++++.+++++.|.++ |+++.  ..++++.+.+..        ......+.+. 
T Consensus       282 t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~~~~i~~l~~~~--------~~~~~~~~~~-  349 (407)
T PRK07179        282 TLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYNIR--SESQIIALETGS--------ERNTEVLRDA-  349 (407)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCEEEEEeCC--------HHHHHHHHHH-
Confidence            77788777788889888776678899999999999999987 87765  357888887632        1123345554 


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      |.++||++....++....  .+..|||+++..+|++|+++++++|++++.+.
T Consensus       350 L~~~GI~~~~~~~p~~~~--~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        350 LEERNVFGAVFCAPATPK--NRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             HHHCCceEeeecCCCCCC--CCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            455699865443333211  12459999999999999999999999987763

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=100.00  E-value=6.7e-42  Score=347.29  Aligned_cols=366  Identities=30%  Similarity=0.577  Sum_probs=304.3

Q ss_pred             CCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567           92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD  171 (483)
Q Consensus        92 ~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~  171 (483)
                      .+.++.+++|.+++++|+++|||++++++|+..+|.+.+++.+++++++...++++.+.|..+...++++++++++|.++
T Consensus        16 ~~~~~~~~~g~~~~~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~   95 (385)
T TIGR01825        16 SIRVLESAQGPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEA   95 (385)
T ss_pred             cccccccCCCceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCc
Confidence            46779999999999999999999999999998999999999999998876666666677888999999999999999988


Q ss_pred             EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++++|++++..++.++.++||.|+++.++|.++..++.+.+.++..+++.|++++++.+++....      ++++|++
T Consensus        96 ~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~------~~~~v~~  169 (385)
T TIGR01825        96 ALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRVLRENPSY------GKKLIVT  169 (385)
T ss_pred             EEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhccC------CCeEEEE
Confidence            9999999999999999999999999999999999998988889988888889999999888653321      3788999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV  331 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~  331 (483)
                      +++++++|.+.|+++|.++|++||+++|+||+|+.|+++++|.+...++++. .++|++++|+||++|..|||+++++++
T Consensus       170 ~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~gG~~~~~~~~  248 (385)
T TIGR01825       170 DGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKEL  248 (385)
T ss_pred             ecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCCCEEecCHHH
Confidence            9999999999999999999999999999999999888887676666667776 467899999999999889999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      ++.+......+.+++..+|..++++.++++.+.+..+..++++++++++.+.|+++ |+++.. +.++++.+.+..    
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~----  322 (385)
T TIGR01825       249 IEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGD----  322 (385)
T ss_pred             HHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECC----
Confidence            99887655556666556778788888889877655568888999999999999886 777653 356777766531    


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                          .....++++.++++ ||.+....++..+..  ...||++++..+|++|++++++++++++++
T Consensus       323 ----~~~~~~~~~~L~~~-gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       323 ----EKAAQEFSRRLFDE-GIFAQSIVFPTVPRG--TARIRNIPTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             ----HHHHHHHHHHHHHC-CcEEcccCCCCCCCC--CceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                11234677777665 999865444322111  134999999999999999999999998865

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.5e-42  Score=336.05  Aligned_cols=353  Identities=20%  Similarity=0.307  Sum_probs=286.1

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|+|+| +||++||||+.+   .-||| .||.|.+|+.+++++ |..      |..+++...++++.|++.+
T Consensus        35 ~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH-~~p~V~~Av~~~l~~-G~~------fg~Pte~Ei~~Aell~~~~  106 (432)
T COG0001          35 YPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGH-AHPAVVEAVQEQLER-GLS------FGAPTELEVELAELLIERV  106 (432)
T ss_pred             CCeeEEeccCCeEEeCCCCEeeehhccCcccccCC-CCHHHHHHHHHHHHh-cCC------CCCCCHHHHHHHHHHHHhc
Confidence            68999999999999 899999999987   67999 899999999999998 442      2234578899999999999


Q ss_pred             CC-CCEEEecccHHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhc-------------C------CeEEEecCCC
Q 011567          168 GT-PDSILYSYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLS-------------R------STVVYFKHND  224 (483)
Q Consensus       168 g~-e~~i~~~sG~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s-------------~------~~v~~~~~~d  224 (483)
                      +. |..-++|||++|+++|+   |++++|.+||.++..||++.-..+.-.             |      ..+..+++||
T Consensus       107 p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND  186 (432)
T COG0001         107 PSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYND  186 (432)
T ss_pred             CcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCC
Confidence            97 77778899999999996   578999999999999998754333211             1      2457889999


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                      ++.+++++++..++       +++|++||+.+|.|.+.|    |++|++||++||++||.||+.++++.+.  .|.+++|
T Consensus       187 ~~al~~~~~~~g~~-------IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~--gGaq~~~  257 (432)
T COG0001         187 LEALEEAFEEYGDD-------IAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL--GGAQGYY  257 (432)
T ss_pred             HHHHHHHHHHcCCc-------EEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC--ccccccc
Confidence            99999999987654       999999999999999988    8999999999999999999999888764  6788999


Q ss_pred             CCCCCceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeec-CCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFS-ASLPPYLASAAITAIDVLEENPDLITKLKK  375 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs-~~~~p~~~aaa~~al~~l~~~~~~~~~l~~  375 (483)
                      |+.|   |+.  +++|.+|  ||+    ..|++++++++...+..|.-+ .+.||++++|+.++++.+.+.+...+++.+
T Consensus       258 gi~P---Dlt--tlGKiIG--GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~  330 (432)
T COG0001         258 GVEP---DLT--TLGKIIG--GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDA  330 (432)
T ss_pred             CcCc---chh--hhhhhhc--CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9999   887  8999998  654    578999999876655333222 257999999999999999876568999999


Q ss_pred             HHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCC-c----hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567          376 NTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGS-M----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL  447 (483)
Q Consensus       376 ~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~-~----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~  447 (483)
                      +++.|++.|++.   .+++......+.++.+.+...... .    ..+.+...++...+|+ +||++.+..+..      
T Consensus       331 ~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~-~GV~l~ps~~ea------  403 (432)
T COG0001         331 LGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLN-RGVYLAPSQFEA------  403 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHh-CCcccCCccccc------
Confidence            999999998764   266665555677888877653211 1    1123346667776665 599999876532      


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                           ..++..||++|||+.+++++++++++..
T Consensus       404 -----~flS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         404 -----GFLSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             -----eeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence                 5577889999999999999999887653

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=100.00  E-value=8.3e-42  Score=344.04  Aligned_cols=340  Identities=23%  Similarity=0.331  Sum_probs=280.7

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhc-------CCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKY-------GVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLST  181 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-------g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a  181 (483)
                      .+++||+|+||||+..+|++.+++.+++++|       |.|++|+|.++|+.+.+.++|++||+++|.++++++++|+.|
T Consensus         4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a   83 (370)
T PRK05937          4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA   83 (370)
T ss_pred             CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence            3689999999999999999999999999999       699999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      +...+..+.+++|+|+.+..+|.+++.+++........++|+|+++|++.++.....    +.++++|+++++++++|.+
T Consensus        84 ~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~v~v~~v~s~~G~i  159 (370)
T PRK05937         84 NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQR----SFGRIFIFVCSVYSFKGTL  159 (370)
T ss_pred             HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhhcc----CCCcEEEEEecCCCCCCCc
Confidence            988888888899999999999999999998766666778999999999999764321    1236788899999999999


Q ss_pred             cChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCc
Q 011567          262 APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       262 ~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~  341 (483)
                      .|+++|.++|++||+++++||+|+.|.+|.+|+|+...++..  +.++++.|++|++|+.|+.+++.+++.+.+.....+
T Consensus       160 ~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~--~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~~~~~  237 (370)
T PRK05937        160 APLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPP  237 (370)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC--CCcEEEEechhhhhcCceEEEcCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999998877666653  234556799999998888788888877776655668


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      +.|+++.+|..++++.++++.+.+. ...+++++++.+++++.|... +       .+++..+.++..         ...
T Consensus       238 ~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~-~-------~~~~~~i~~~~~---------~~~  300 (370)
T PRK05937        238 LRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA-A-------PGCVQPIFLPGI---------SEQ  300 (370)
T ss_pred             CeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-C-------CCCEEEEEeCCh---------hHH
Confidence            8898888888888888999988654 346788888889998887542 1       123344555321         123


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+.+. |.++||++....++.      .+.||++++..+|++||++++++|+++++++
T Consensus       301 ~~~~~-L~~~gi~v~~~~~~~------~~~iRis~~~~~t~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        301 ELYSK-LVETGIRVGVVCFPT------GPFLRVNLHAFNTEDEVDILVSVLATYLEKY  351 (370)
T ss_pred             HHHHH-HHHCCeeEEeeCCCC------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            45554 556699987654432      2459999999999999999999999998765

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=100.00  E-value=1.4e-41  Score=344.98  Aligned_cols=365  Identities=31%  Similarity=0.496  Sum_probs=303.1

Q ss_pred             ccCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567           90 RCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT  169 (483)
Q Consensus        90 ~~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~  169 (483)
                      +...+++++++|.+++.+|++||||.+++++|+.++|++++++.+++++|+.+.+.++.++|..+...++++.++++++.
T Consensus        20 ~~~~~~~~~~~g~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~   99 (385)
T PRK05958         20 YRSLRPREGGAGRWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA   99 (385)
T ss_pred             CccccccccCCCceeEeCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC
Confidence            34568899999999999999999999998889878899999999999999887777777788888999999999999998


Q ss_pred             CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       170 e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++.+++++|++++..++++++++||.|+++.++|.++..++.+.+.+++.++.+|++++++.++....       +++++
T Consensus       100 ~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~-------~~~lv  172 (385)
T PRK05958        100 ERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLAKWRA-------GRALI  172 (385)
T ss_pred             CcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhccC-------CCeEE
Confidence            89999999999998888999999999999999999999999999999999999999999998865321       36788


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccH
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSA  329 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~  329 (483)
                      +++++++++|.+.|+++|+++|++||+++|+||+|+.|.++.+|.+...++++...+.+++++|++|++|+.||++++++
T Consensus       173 i~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~  252 (385)
T PRK05958        173 VTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSE  252 (385)
T ss_pred             EEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCCcEEEcCH
Confidence            99999999999999999999999999999999999988887766665554455433346888999999998899999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      ++++.++.....+.++.+.+|..++++.++++.++..+++.+++.++.+++.+.|+++ ++++.. +.++++++.+++  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~--  328 (385)
T PRK05958        253 TLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL-GFQLMD-SQSAIQPLIVGD--  328 (385)
T ss_pred             HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEeCC--
Confidence            9988876555566676777888888888999888655568899999999999999886 676553 467788887732  


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                            .....++.+.+++ +||.+.+...+..+..  +..+|++++..+|++|+++++++|+++
T Consensus       329 ------~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~--~~~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        329 ------NERALALAAALQE-QGFWVGAIRPPTVPAG--TSRLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             ------HHHHHHHHHHHHH-CCceEecccCCCCCCC--CceEEEEecCCCCHHHHHHHHHHHHhc
Confidence                  1234467777654 5999987543322111  235999999999999999999999875

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=2.7e-42  Score=350.33  Aligned_cols=344  Identities=18%  Similarity=0.269  Sum_probs=273.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      .|.++++++|.++| .||++||||+++   ++||| +||+|.+|+.+++++. ..+.      ..+.+.+.+|+++|+++
T Consensus        17 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~la~~L~~~   89 (397)
T TIGR03246        17 APFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGN------GYTNEPVLRLAKKLVDA   89 (397)
T ss_pred             CCceEEEeecCEEEeCCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccC------ccCCHHHHHHHHHHHhh
Confidence            36778999999999 799999999995   89999 7999999999999984 2221      12467889999999999


Q ss_pred             hCCCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCH
Q 011567          167 LGTPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDM  225 (483)
Q Consensus       167 ~g~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~  225 (483)
                      ++.+.+++++||++|++.|++..         ++|.++|.++..||+++..++.+++.            .+..++|||+
T Consensus        90 ~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  169 (397)
T TIGR03246        90 TFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDL  169 (397)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCH
Confidence            98888899999999999998865         36788999999999998877776653            3457889999


Q ss_pred             HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-ccc
Q 011567          226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHC  300 (483)
Q Consensus       226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~  300 (483)
                      +++++.+.+          ++++|++||+++++|.+.|    |++|+++|++||+++|+||+|++  +|++|+++. +++
T Consensus       170 ~~l~~~l~~----------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG--~Gr~G~~~a~~~~  237 (397)
T TIGR03246       170 AAAKALISD----------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTG--VGRTGELYAYMHY  237 (397)
T ss_pred             HHHHHHhcc----------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhc--CCccccchhhhhc
Confidence            999988842          3789999999999887653    99999999999999999999954  488888754 788


Q ss_pred             CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA  378 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~  378 (483)
                      ++.|   |++  |++|++|.  +.|++++++++++.++...++.+|+  .+|+.++++.++|+.+++ +++.++++++++
T Consensus       238 gv~p---Di~--t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~--~~p~~~aaa~a~l~~~~~-~~l~~~~~~~~~  309 (397)
T TIGR03246       238 GVTP---DIL--TSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYG--GNPLACAVAGKVLDLVNT-PELLAGVKQRHD  309 (397)
T ss_pred             CCCC---CEE--EeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCC--CCHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence            9877   887  89999971  1145666999999886554555554  588999999999998865 458999999999


Q ss_pred             HHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          379 ILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       379 ~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      ++++.|+++. .+.+.  ..+.+.++.+.+.+.      .......++..+++ +|+++.+..         ++.||++|
T Consensus       310 ~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~------~~~~~~~~~~~l~~-~Gv~~~~~g---------~~~lR~~p  373 (397)
T TIGR03246       310 LFVDGLEKINARYNVFSEIRGKGLLIGAVLTEA------YQGKAKQFVNAAAE-EGVIALIAG---------PNVVRFAP  373 (397)
T ss_pred             HHHHHHHHHHhcCCCeEeeecCceEEEEEEcCc------hhhHHHHHHHHHHH-CCeEEeecC---------CCEEEEeC
Confidence            9999998752 12222  233566777776431      11234567777665 599987532         13499999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++.+|++||++++++|++++.++
T Consensus       374 ~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       374 SLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=3e-42  Score=356.00  Aligned_cols=358  Identities=17%  Similarity=0.201  Sum_probs=270.0

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      +.|+++++++|.|+| +|||+||||.++   +++|| +||+|.+|+.+++++++..+.   ...++++.+.+|+++|++.
T Consensus        70 ~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh-~hp~v~~Av~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~  145 (504)
T PLN02760         70 LEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGG-SEPRLVAAATEQLNKLPFYHS---FWNRTTKPSLDLAKELLEM  145 (504)
T ss_pred             CCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCC-CCHHHHHHHHHHHhhccceec---ccccCcHHHHHHHHHHHhh
Confidence            357889999999999 899999999995   89999 899999999999998654321   1234678899999999998


Q ss_pred             hC-C--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCeEE------------EecC
Q 011567          167 LG-T--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRSTVV------------YFKH  222 (483)
Q Consensus       167 ~g-~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~------------~~~~  222 (483)
                      +. .  +.+++++||++|+++|++..         ++|.++|.++..||+++..++.+++.+..            ..+.
T Consensus       146 ~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~  225 (504)
T PLN02760        146 FTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDC  225 (504)
T ss_pred             cCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCC
Confidence            63 2  35677799999999998865         24678999999999999888877764221            1111


Q ss_pred             C----------C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEE
Q 011567          223 N----------D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFL  280 (483)
Q Consensus       223 ~----------d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~  280 (483)
                      +          +        .++||+++.+..      +..+++|++||+++++|.+.|    |++|+++|++||++||+
T Consensus       226 p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~------~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~  299 (504)
T PLN02760        226 PHYWRFHLPGETEEEFSTRLADNLENLILKEG------PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIA  299 (504)
T ss_pred             CcccccCCCCCcHHHHHHHHHHHHHHHHHhcC------CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            0          1        134565554221      235899999999999999988    99999999999999999


Q ss_pred             eCccc-cccccCCCCccccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCc
Q 011567          281 DESNS-FGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLP  349 (483)
Q Consensus       281 DEa~s-~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~  349 (483)
                      ||+++ +|++|.  .+.++++|+.|   ||+  +++|++|.   +.|.+++++++++.+...       .++++|+  .|
T Consensus       300 DEV~TGfGRtG~--~~a~e~~gv~P---Div--tlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~--gn  370 (504)
T PLN02760        300 DEVICAFGRLGT--MFGCDKYNIKP---DLV--SLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYS--GH  370 (504)
T ss_pred             cchhhCCcccch--hhHHHhcCCCC---cEE--EecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCC--CC
Confidence            99995 555553  23358899988   887  79999972   234467889999987532       2444555  48


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCc---hhhHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSM---KNDLQLLEDIAD  424 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~  424 (483)
                      |+.|++++++|++++++ ++.+++++++++|++.|+++...++..  ...+.++.+.+.++....   ..+......+..
T Consensus       371 Pl~~Aaala~Le~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~  449 (504)
T PLN02760        371 PVSCAVALEALKIYKER-NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGA  449 (504)
T ss_pred             HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHH
Confidence            99999999999999875 589999999999999998763333222  345678888875432211   112334566777


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .+++ +||++.+..          ..+|++|++.+|++|||++++++++++.++.
T Consensus       450 ~~~~-~Gvl~~~~g----------~~lrl~Ppl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        450 ECKK-RGMLVRVAG----------DNIMMSPPLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             HHHh-CCcEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7665 599987532          2389999999999999999999999987763

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=349.93  Aligned_cols=358  Identities=18%  Similarity=0.201  Sum_probs=266.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+++++++++.++   +.+.++++.+.+|+++|++++
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~~---~~~~~~~~~~~~lae~L~~~~  111 (460)
T PRK12403         36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYYN---MFFHTTHPAVIELSELLFSLL  111 (460)
T ss_pred             CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCee---cccccCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999887   56999 89999999999999976532   223456788999999999999


Q ss_pred             C--CCCEEEecccHHHHHhhhhhhc------c-CC--cEEEEcCCchhHHHhHhhhcCCe-----------EEEecCC--
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCFC------K-KG--DLIVADEGVHWGIQNGLYLSRST-----------VVYFKHN--  223 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~~------~-~g--diI~~~~~~h~s~~~g~~~s~~~-----------v~~~~~~--  223 (483)
                      +  .+.+++++||++|+++|++...      + ++  .+|.....||+++..++.+++..           +..++..  
T Consensus       112 p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~  191 (460)
T PRK12403        112 PGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYW  191 (460)
T ss_pred             CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcc
Confidence            7  4678888999999999987653      3 22  34456788999999888877643           1112111  


Q ss_pred             -----C----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcc
Q 011567          224 -----D----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESN  284 (483)
Q Consensus       224 -----d----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~  284 (483)
                           +          +++|++.+.+..      +..+++|++||+++++|.+.|    |++|+++|++||++||+||++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~le~~~~~~~------~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~  265 (460)
T PRK12403        192 YANGGELTPAEFGRRAALQLEEKILELG------AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI  265 (460)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHHhC------CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence                 1          244555443322      125899999999999999887    999999999999999999999


Q ss_pred             ccccccCCCCccc-cccCCCCCceeEEEcccccccc----CCCceeeccHHHHHHHHhcCCceee--cCCCcHHHHHHHH
Q 011567          285 SFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQRLSSSGYVF--SASLPPYLASAAI  357 (483)
Q Consensus       285 s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg----~~GG~i~~~~~~~~~~~~~~~~~~f--s~~~~p~~~aaa~  357 (483)
                      ++  +|++|+++. +++|+.|   ||+  +++|++|    +.|| +++++++++.+......+.+  +.+.||+.|++++
T Consensus       266 tG--fGRtG~~~a~e~~gv~P---Div--~~gK~lggG~~Piga-~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaal  337 (460)
T PRK12403        266 GG--FGRTGEWFAHEHFGFEP---DTL--SIAKGLTSGYVPMGG-LVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAI  337 (460)
T ss_pred             cC--CCcCchhhhhhhcCCCC---CeE--EEcccccccccceEE-EEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHH
Confidence            74  678888766 8999988   898  6999998    2223 45788898887643322222  3347999999999


Q ss_pred             HHHHHHhcCcHHHHHHH-HHHHHHHHhhccC-CCceee--cCCCCCEEEEEecCCCCCch---hhHHHHHHHHHHHHHhC
Q 011567          358 TAIDVLEENPDLITKLK-KNTAILRTGLSDI-HGLSIA--SNPESPIVFLILEKSTGSMK---NDLQLLEDIADWALKED  430 (483)
Q Consensus       358 ~al~~l~~~~~~~~~l~-~~~~~l~~~L~~~-~~~~i~--~~~~~~i~~l~l~~~~~~~~---~~~~~~~~i~~~~l~~~  430 (483)
                      ++|+++++++ +.++++ ++.++|++.|+++ ..+++.  ....+.++.+.+..+.....   ........+...+++ +
T Consensus       338 a~L~~i~~~~-l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  415 (460)
T PRK12403        338 ANLKALRDEG-VVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFE-E  415 (460)
T ss_pred             HHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHh-C
Confidence            9999998754 889996 8999999988754 123322  23567788888853321111   111234445565565 5


Q ss_pred             CEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          431 GVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       431 Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      |+++.+..          ..+|++|+..+|++|++++++++++++.++.
T Consensus       416 Gll~~~~~----------~~~~l~Ppl~it~~eid~~~~~l~~al~~~~  454 (460)
T PRK12403        416 GVIIRSTL----------GRMIMAPALVAGRAEIDELVDKTRIAVDRTA  454 (460)
T ss_pred             CEEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99997431          2289999999999999999999999998874

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=5.5e-41  Score=337.34  Aligned_cols=358  Identities=32%  Similarity=0.549  Sum_probs=299.1

Q ss_pred             cccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEe
Q 011567           96 LESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY  175 (483)
Q Consensus        96 i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~  175 (483)
                      +++++|.++..+|+++|||++++++|+..+|++.+++.+++++|+.+.++++..+|..+...++++.++++++.++.+++
T Consensus         3 ~~~~~~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~   82 (360)
T TIGR00858         3 LDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLF   82 (360)
T ss_pred             cccCCCCeEEECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            57889999999999999999999999878899999999999998887777777788888899999999999999999999


Q ss_pred             cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ++|++++..++++++++||.|+++.++|.+...++...+.+++.++..|+++|++.+++....      ++++|++++++
T Consensus        83 ~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~------~~~~v~~~~~~  156 (360)
T TIGR00858        83 SSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGE------RRKLIVTDGVF  156 (360)
T ss_pred             CchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHcccC------CCeEEEEeCCc
Confidence            999999888888899999999999999999999999999999888889999999988653211      36899999999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQ  335 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~  335 (483)
                      +++|.+.|+++|+++|++||+++|+||+|+.|.++..+.+...++++.+++.||+++|++|++|+.|||+++++++++.+
T Consensus       157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~gG~~~~~~~~~~~~  236 (360)
T TIGR00858       157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYL  236 (360)
T ss_pred             cCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccCcEEEcCHHHHHHH
Confidence            99999999999999999999999999999988877666666667777667789999999999999899999999998887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      ......+.++++.++..++++.++++.+...++..++++++.+++.+.|+++ ++.+. ++.++++++.++.        
T Consensus       237 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~--------  306 (360)
T TIGR00858       237 INRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGD--------  306 (360)
T ss_pred             HHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCC--------
Confidence            6555555666666788888888899877665568899999999999999886 66655 3467888888742        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      .....++++.+++ +||++.+...+....  .+..+|++++..+|++|+++++++|+
T Consensus       307 ~~~~~~~~~~l~~-~gI~v~~~~~~~~~~--~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       307 NASALALAEELQQ-QGIFVGAIRPPTVPA--GTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             HHHHHHHHHHHHH-CCeeEeeeCCCCCCC--CCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            1124467776654 599998765432211  12359999999999999999998874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.7e-41  Score=334.40  Aligned_cols=355  Identities=19%  Similarity=0.278  Sum_probs=274.6

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.+|++++|.|++ .|||+|||..|+   +.+|| ++|+|.+|+.+|+++...-.  +  ...+..+..+|+++|+++.+
T Consensus        27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~--~--~~~t~~Pa~~LA~~L~~~aP  101 (449)
T COG0161          27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVM--F--GGFTHEPAIELAEKLAELAP  101 (449)
T ss_pred             ceeeeecceeEEEeCCCCEEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchh--h--cccCCchHHHHHHHHHHhCC
Confidence            7889999999999 799999999998   88999 89999999999999843311  1  12234559999999999998


Q ss_pred             ---CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe-E------------EEe--c
Q 011567          169 ---TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST-V------------VYF--K  221 (483)
Q Consensus       169 ---~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~-v------------~~~--~  221 (483)
                         .+.+++.+||++|++.|++...         +|..+|....+||+.+..++++.+.. .            ...  +
T Consensus       102 ~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P  181 (449)
T COG0161         102 EGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAP  181 (449)
T ss_pred             CCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCC
Confidence               4566666999999999987532         34458889999999999888877621 1            011  1


Q ss_pred             C----C-----C------HHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CCCccC----hHHHHHHHHHcCcEEEEe
Q 011567          222 H----N-----D------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAP----LDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       222 ~----~-----d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G~i~~----L~~l~~l~~k~~~~li~D  281 (483)
                      +    +     +      .+.||+++.++.+      .+++++|+||+.+. +|.+.|    |++++++|+|||++||+|
T Consensus       182 ~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~------~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~D  255 (449)
T COG0161         182 YAYRRGFFGEGDEEFAEAADELEALILEHGP------ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIAD  255 (449)
T ss_pred             cccccCCCCCChHHHHHHHHHHHHHHHhcCc------ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEee
Confidence            1    1     1      3456666666553      36999999999888 777776    999999999999999999


Q ss_pred             CccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhc-----CCceeecCCCcH
Q 011567          282 ESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLS-----SSGYVFSASLPP  350 (483)
Q Consensus       282 Ea~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~-----~~~~~fs~~~~p  350 (483)
                      |+.++  +||||..+ ++|+|+.|   ||+  +++|+++  |||     ++.++++.+.+...     .++++|++  ||
T Consensus       256 EV~tG--FGRTG~~FA~e~~gi~P---Di~--~~aKGLT--~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsg--hP  324 (449)
T COG0161         256 EVATG--FGRTGKMFACEHAGIVP---DIL--CLAKGLT--GGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSG--NP  324 (449)
T ss_pred             cceeC--CCcCchhhhhhhcCCCC---Cee--eeccccc--ccchhhHhHhhhHHHHHHHhcccCCeeccCCcccc--CH
Confidence            99875  67778766 59999999   898  7999998  666     35678888776543     46666665  99


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc-CCCceeecC--CCCCEEEEEecCCCCCchh-hHHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD-IHGLSIASN--PESPIVFLILEKSTGSMKN-DLQLLEDIADWA  426 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~--~~~~i~~l~l~~~~~~~~~-~~~~~~~i~~~~  426 (483)
                      ++||+|+++|+++++++ ++++.++...+|.++|++ +.+.+.+++  ..+.+..+.+..+...... +.+...++.+.+
T Consensus       325 lacAaAla~L~i~e~e~-l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~  403 (449)
T COG0161         325 LACAAALANLDILEEED-LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAA  403 (449)
T ss_pred             HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHH
Confidence            99999999999998765 999999999999999987 544444433  4566777777554332211 234455677765


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ++ +|+++++...          .+-++|++.+|++||+++++++++++.+....
T Consensus       404 ~e-~Gl~iRp~g~----------~i~~~PPliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         404 LE-RGLLIRPLGD----------VIYLMPPLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             HH-CCeEEeecCC----------EEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            55 5999998732          27799999999999999999999999887653

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=100.00  E-value=4.5e-40  Score=335.29  Aligned_cols=367  Identities=34%  Similarity=0.581  Sum_probs=300.8

Q ss_pred             CccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE
Q 011567           94 PVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS  172 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~  172 (483)
                      ..+++++|.+++ .+|+++|||++++++|+..+|.+.+++.+++++++.+.++++.+.|+.+...++++.+++++|.++.
T Consensus        26 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~  105 (397)
T PRK06939         26 RVITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDA  105 (397)
T ss_pred             ccccCCCCceEEecCCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcE
Confidence            457889999999 5999999999999999988999999999999988777777777889999999999999999999899


Q ss_pred             EEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       173 i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++++|++++..+++++.++||.|++++++|.++..++...+.+++.++++|++++++.+++....    ..++++|+++
T Consensus       106 i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~----~~~~~~v~~~  181 (397)
T PRK06939        106 ILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEA----GARHKLIATD  181 (397)
T ss_pred             EEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhcc----CCCCeEEEEe
Confidence            999999999999999999999999999999999999999999999889889999999888653211    1136888999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARV  331 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~  331 (483)
                      ++++++|.+.++++|+++|++||+++|+||+|++|.++.+|.+..+.+++. .++|++++|+||++ |..|||+++++++
T Consensus       182 ~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~g~r~G~v~~~~~~  260 (397)
T PRK06939        182 GVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEV  260 (397)
T ss_pred             cCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHHHhCccCceEEEeCHHH
Confidence            999999999999999999999999999999998777766555555556664 35689999999999 6778999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      ++.++.....+.++++.++..++++.++++.+.+..+++++++++.+++.+.|+++ ++++.. +.++++.+.+..    
T Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~----  334 (397)
T PRK06939        261 IDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGD----  334 (397)
T ss_pred             HHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECC----
Confidence            99887765566666666777778888888887655578899999999999999876 666543 356666555421    


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                          .....++++.++++ ||.+.+..++..+..  ...||++++..+|++|+++++++|++++++.
T Consensus       335 ----~~~~~~~~~~L~~~-gI~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        335 ----AKLAQEFADRLLEE-GVYVIGFSFPVVPKG--QARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             ----HHHHHHHHHHHHHC-CceEeeeCCCCCCCC--CceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                11245678876665 999886544322111  2459999999999999999999999988764

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-40  Score=335.68  Aligned_cols=360  Identities=22%  Similarity=0.376  Sum_probs=276.9

Q ss_pred             ccCCCccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           90 RCEPPVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        90 ~~~~~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .+.++.+++++|.++| .||++||||++++++|+.+||+|.+|+.++++++| .++++++..+ ..+.+.+++++|++++
T Consensus        26 ~~~~~~~~~~~G~~~~d~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~  104 (402)
T PRK07505         26 GLNGLTVGEREGILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELF  104 (402)
T ss_pred             ccccceeeccCCccEEecCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHh
Confidence            3445778999999999 79999999999999994489999999999999988 4555555433 4678999999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhc------cCCcEEEEcCCchhHHHh--HhhhcCCeEEEecCCCHHHHHHHHHHhhhhh
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFC------KKGDLIVADEGVHWGIQN--GLYLSRSTVVYFKHNDMDSLRNTLERVTADN  239 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~------~~gdiI~~~~~~h~s~~~--g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~  239 (483)
                      |. +++++++|++|+..+++...      +++++|+.+..+|+++..  +....+.+++.++++|+++|++.++..    
T Consensus       105 ~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~----  179 (402)
T PRK07505        105 GA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHNDLDALEDICKTN----  179 (402)
T ss_pred             CC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcC----
Confidence            98 89999999999998886532      466789999999998742  333445788899999999999877431    


Q ss_pred             hhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccc
Q 011567          240 KRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHAL  318 (483)
Q Consensus       240 ~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~l  318 (483)
                           ++.++++||++ ++|.+.|+++|.++|++||++||+||+|+++.+|++|.+.. +++++...+.+++++|++|++
T Consensus       180 -----~~~~vl~~p~~-~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~  253 (402)
T PRK07505        180 -----KTVAYVADGVY-SMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF  253 (402)
T ss_pred             -----CCEEEEEeccc-ccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhh
Confidence                 36788888876 55899999999999999999999999998877888888764 677762134467788999999


Q ss_pred             cCCCceee-ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          319 ATEGGFCT-GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       319 g~~GG~i~-~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                      |+.||+++ +++++++.++....+++|+++.++..++++.++++.+.++  .+..++++++.+.+...+...    +. .
T Consensus       254 ~~~Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~-g  328 (402)
T PRK07505        254 GASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE----QS-G  328 (402)
T ss_pred             hccCeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc----CC-C
Confidence            98889976 5788999888878889999888889999999999866533  345566666655544332211    11 2


Q ss_pred             CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ...++..+.+.+        .....++.+.+++ +||++.+..++.++..  +..|||++++.+|++|+++++++|++++
T Consensus       329 ~~~~i~~~~~~~--------~~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~--~~~lRi~~~~~~t~eei~~~~~~l~~~l  397 (402)
T PRK07505        329 SFLPIRLIYIGD--------EDTAIKAAKQLLD-RGFYTSPVFFPVVAKG--RAGLRIMFRASHTNDEIKRLCSLLKEIL  397 (402)
T ss_pred             CCCCEEEEEeCC--------HHHHHHHHHHHHH-CCCeEeeecCCCCCCC--CceEEEecCccCCHHHHHHHHHHHHHHH
Confidence            234444444421        1234567777664 5999988765543211  1359999999999999999999999987


Q ss_pred             HH
Q 011567          476 AV  477 (483)
Q Consensus       476 ~~  477 (483)
                      ++
T Consensus       398 ~~  399 (402)
T PRK07505        398 DE  399 (402)
T ss_pred             Hh
Confidence            65

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-40  Score=341.26  Aligned_cols=358  Identities=18%  Similarity=0.264  Sum_probs=272.3

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-  167 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-  167 (483)
                      |.++++++|.++| +|||+||||.++   +.||| +||+|.+|+.+++++++.++.+..    +.+.+.+|+++|++++ 
T Consensus        26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~~~~----~~~~~~~la~~L~~~~~  100 (433)
T PRK08117         26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGH-RHPKVVQAIKEQADKLMHGPSGVI----YYESILKLAEELAEITP  100 (433)
T ss_pred             CceEEeeeeeEEEeCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCcccccc----CCHHHHHHHHHHHHhCC
Confidence            3678999999999 899999999997   68999 899999999999998765432221    4578999999999998 


Q ss_pred             CCCCEEEe-cccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecC--------
Q 011567          168 GTPDSILY-SYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKH--------  222 (483)
Q Consensus       168 g~e~~i~~-~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~--------  222 (483)
                      +..+.++| +||++|++.|++.   +++|.++|.++..||+.+..++.+++..             +..++.        
T Consensus       101 ~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (433)
T PRK08117        101 GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPK  180 (433)
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccc
Confidence            43445544 9999999999875   6788899999999999988776554321             111111        


Q ss_pred             ---------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccc
Q 011567          223 ---------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVL  289 (483)
Q Consensus       223 ---------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~l  289 (483)
                               +|++++++++++...     +..+++|++||+++++|.+.|    |++|+++|++||++||+||+|+ | +
T Consensus       181 ~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~  253 (433)
T PRK08117        181 GEDPEVCFLECLRDLESLFKHQVT-----PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-F  253 (433)
T ss_pred             cCchhHHHHHHHHHHHHHHHhccC-----CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-c
Confidence                     245667776654211     124899999999999999988    9999999999999999999999 4 7


Q ss_pred             cCCCCccc-cccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC
Q 011567          290 GRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       290 g~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~  366 (483)
                      |++|+++. +++|+.|   |++  |++|++|.  +.|++++++++++.+....++++|  +.||+.++++.++|+.+++.
T Consensus       254 gr~G~~~~~~~~gv~p---Di~--t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~--~~np~~~aaa~a~L~~l~~~  326 (433)
T PRK08117        254 GRTGEWFAAQTFGVVP---DIM--TIAKGIASGLPLSAVVASKELMEQWPLGSHGTTF--GGNPVACAAALATLEVIKEE  326 (433)
T ss_pred             CccccchhHhhcCCCC---CEe--ehhhhccCCCcceeEEEcHHHHhhccCCCCCCCC--CcCHHHHHHHHHHHHHHHhc
Confidence            88888765 7889887   776  89999983  236678899999887654444455  45899999999999999764


Q ss_pred             cHHHHHHHHHHHHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567          367 PDLITKLKKNTAILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD  443 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~  443 (483)
                       +++++++++++++++.|.++. .+++  .....+.++.+.+.++..  ..+......+...+++ +||++.+....   
T Consensus       327 -~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~--~~~~~~~~~~~~~l~~-~Gv~~~~~g~~---  399 (433)
T PRK08117        327 -KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDG--EPDGDAVEKILDKCLE-KGLLFYLCGNA---  399 (433)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCC--CcchHHHHHHHHHHHH-CCCEEeecCCC---
Confidence             589999999999999987752 1222  123345677777754321  1122345567776655 59988653211   


Q ss_pred             cCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          444 KCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       444 ~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                          ...||++|++.+|++||++++++|+++++++..
T Consensus       400 ----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        400 ----GNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             ----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence                234999999999999999999999999988754

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=336.25  Aligned_cols=342  Identities=17%  Similarity=0.210  Sum_probs=263.9

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.++| .|||+||||+++   +++|| +||+|.+|+.+++++...++   ..  ...++..+|+++|++..+
T Consensus        19 ~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh-~~p~v~~a~~~q~~~~~~~~---~~--~~~~~~~~la~~l~~~~~   92 (395)
T PRK03715         19 DIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGH-CNPGMVEALAAQAEKLINPS---PA--FYNEPMAKLAGLLTQHSC   92 (395)
T ss_pred             CceEEeeecCEEEECCCCEEEECCcChhhccCCC-CCHHHHHHHHHHHHhccccc---cc--ccCHHHHHHHHHHhhccC
Confidence            5678999999999 799999999984   88999 68999999999998854321   11  134667788888887766


Q ss_pred             CCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHHHH
Q 011567          169 TPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDSL  228 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~~L  228 (483)
                      .+++++++||++|++.|++...        +|.++|.++..+|+++..++.+++..            +...+++|++++
T Consensus        93 ~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l  172 (395)
T PRK03715         93 FDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASV  172 (395)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHH
Confidence            7788889999999999987764        56789999999999999988877643            122346788888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCC
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVP  303 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~  303 (483)
                      ++.+++          .+++|++||+++++|.+.|    +++|+++|++||+++|+||+++ | +|++|+++. +++++.
T Consensus       173 ~~~l~~----------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~~a~~~~gv~  240 (395)
T PRK03715        173 EKLITD----------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTLFAYELSGIE  240 (395)
T ss_pred             HHHcCC----------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcchhhHhhcCCC
Confidence            877742          3789999999999999887    9999999999999999999999 4 799999875 889998


Q ss_pred             CCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                      |   ||+  +++|++|.  +.|.+++++++... ....++.+|  +.+|+.+++++++|+++++ +++.++++++.++|+
T Consensus       241 P---Di~--t~gK~lg~G~p~~av~~~~~i~~~-~~~~~~~T~--~g~pl~~aaala~L~~l~~-~~l~~~~~~~g~~l~  311 (395)
T PRK03715        241 P---DIM--TLGKGIGGGVPLAALLAKAEVAVF-EAGDQGGTY--NGNPLMTAVGVAVISQLLA-PGFLEGVRARGEYLK  311 (395)
T ss_pred             C---cee--eehhhhhCCcceEEEEEccccccc-cCCCcCCCC--CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence            7   886  79999983  23556777777532 222223344  4589999999999999986 468999999999999


Q ss_pred             HhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC
Q 011567          382 TGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA  458 (483)
Q Consensus       382 ~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~  458 (483)
                      +.|+++.   ++.-. ...++++.+.+.++      ......+.+.+.+ ++|+++.....         +.||++|++.
T Consensus       312 ~~L~~l~~~~~i~~v-rG~Glm~~i~l~~~------~~~~~~~~~~~~~-~~Gi~~~~~~~---------~~lR~~p~l~  374 (395)
T PRK03715        312 EKLLELSEERGLEGE-RGEGLLRALLLGKD------IGPQIVEKARDMQ-PDGLLLNAPRP---------NLLRFMPALN  374 (395)
T ss_pred             HHHHHHhhcCCcCeE-EcceeEEEEEecCc------hHHHHHHHHHhcc-CCCEEEeecCC---------CEEEEeCCcc
Confidence            9997641   33212 34688999988531      1112223333322 23999864422         4499999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 011567          459 HSEADLVKACESLKRISAVV  478 (483)
Q Consensus       459 ~t~edi~~~~~~l~~~~~~~  478 (483)
                      +|++||++++++|+++++++
T Consensus       375 ~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        375 VTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             cCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=6.2e-40  Score=335.82  Aligned_cols=354  Identities=16%  Similarity=0.187  Sum_probs=272.7

Q ss_pred             CCCccccCCC-CeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           92 EPPVLESAAG-PHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        92 ~~~~i~~~~g-~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      .|.++.+++| .|+| .||++||||.++   ..+|| +||+|.+|+.+|+++....+   +  +...+...+|+++|++.
T Consensus        63 ~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~~---~--~~~~~~~~~lae~L~~~  136 (459)
T PRK11522         63 YGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLHS---Q--ELLDPLRAMLAKTLAAL  136 (459)
T ss_pred             CCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCcccc---c--ccCCHHHHHHHHHHHHh
Confidence            3578899999 9999 899999999998   67999 89999999999999854322   2  23467889999999998


Q ss_pred             hCC--CCEEEecccHHHHHhhhhh---hcc---CCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567          167 LGT--PDSILYSYGLSTMFSAIPC---FCK---KGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD  226 (483)
Q Consensus       167 ~g~--e~~i~~~sG~~a~~~ai~~---~~~---~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~  226 (483)
                      ++.  +.+++.+||++|++.|++.   +++   |.++|.+...||+.+...+.+++..            +..++++|.+
T Consensus       137 ~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~  216 (459)
T PRK11522        137 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIE  216 (459)
T ss_pred             CCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHH
Confidence            763  4567779999999999764   443   5578999999999887766655422            3456778999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~  301 (483)
                      ++++.+++...    .+..+++|++||+++++|.+.|    |++++++|++||+++|+||++++  +|++|+++ ++++|
T Consensus       217 ~l~~~l~~~~~----~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~g  290 (459)
T PRK11522        217 AMRTALSECKK----TGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTG--MGRTGKMFACEHEN  290 (459)
T ss_pred             HHHHHHHHhhc----cCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceec--CCccchhhhhhccC
Confidence            99998865421    1224899999999999999888    99999999999999999999974  68888874 58999


Q ss_pred             CCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA  378 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~  378 (483)
                      +.|   ||+  +++|++|.   +-|.+++++++++.+......+..+.+.||+.|++++++|+.++++ ++.++++++++
T Consensus       291 v~P---Div--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~-~l~~~~~~~g~  364 (459)
T PRK11522        291 VQP---DIL--CLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ-NLPAQAEQKGD  364 (459)
T ss_pred             CCC---CEE--EechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence            988   887  89999982   1233456788888764321112222245999999999999999875 58999999999


Q ss_pred             HHHHhhccCC-Cce-e--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          379 ILRTGLSDIH-GLS-I--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       379 ~l~~~L~~~~-~~~-i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      +|++.|+++. .++ +  .....+.++.+.+.++        .....+...+++ +||++.+....       ...||++
T Consensus       365 ~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~--------~~~~~i~~~l~~-~Gvl~~~~~~~-------~~~lr~~  428 (459)
T PRK11522        365 YLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--------EIGYNFASEMFR-QRVLVAGTLNN-------AKTIRIE  428 (459)
T ss_pred             HHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc--------hHHHHHHHHHHH-CCeEEEecCCC-------CCEEEEE
Confidence            9999998752 232 1  1234678888888532        234567777665 59999754210       2349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      |++.+|++||++++++++++++++-
T Consensus       429 Ppl~~t~~~id~~l~~l~~~l~~~~  453 (459)
T PRK11522        429 PPLTLTIEQCEQVLKAARKALAAMR  453 (459)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=6.8e-40  Score=333.10  Aligned_cols=375  Identities=17%  Similarity=0.226  Sum_probs=279.9

Q ss_pred             HHHhhcCCCCCCccccccc--ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCC
Q 011567           71 ELCDEWVPESLIPPIIEEM--RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSC  144 (483)
Q Consensus        71 ~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~  144 (483)
                      +...++.|-..........  .+.|+++.+++|.++| .||++|||+.++   ..+|| +||+|.+|+.+++++...   
T Consensus        12 ~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~---   87 (433)
T PRK00615         12 SEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGH-SHPKICDAIQQGAERGTS---   87 (433)
T ss_pred             HHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCCC---
Confidence            3344566665543333221  1357889999999999 899999999987   57899 899999999999987321   


Q ss_pred             CCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHH---HhHhhhcC--
Q 011567          145 GPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGI---QNGLYLSR--  214 (483)
Q Consensus       145 ~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~---~~g~~~s~--  214 (483)
                          +..+++...+|.++|++.++.  +.+.+++||++|++.|++   .+++|..+|.+..+||+..   ..++.+++  
T Consensus        88 ----~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~  163 (433)
T PRK00615         88 ----YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETS  163 (433)
T ss_pred             ----CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCC
Confidence                123457789999999999864  466677999999999975   4668888999999999965   43333321  


Q ss_pred             --------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCc
Q 011567          215 --------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRF  276 (483)
Q Consensus       215 --------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~  276 (483)
                                    .....++|||++++++.+++...       ..++|++||++++.|.+.|    |++|+++|++||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~  236 (433)
T PRK00615        164 LDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGH-------RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGS  236 (433)
T ss_pred             cCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCC-------ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence                          12345688999999999875432       4889999999999999888    6799999999999


Q ss_pred             EEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee-cCCCcHHHH
Q 011567          277 RVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLA  353 (483)
Q Consensus       277 ~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f-s~~~~p~~~  353 (483)
                      ++|+||++++.+.|.  .|..+++|+.|   ||+  +|+|++|.  ++|++++++++++.++..+..+.+ +.+.||+.|
T Consensus       237 llI~DEv~tG~R~G~--~ga~~~~gv~P---Di~--~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~  309 (433)
T PRK00615        237 LSIMDEVVTGFRVAQ--GGAAAIYHVKP---DIT--VYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAM  309 (433)
T ss_pred             EEEEEcccccccccH--hHHHHhcCCCC---CeE--EEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHH
Confidence            999999997434442  56678899987   887  69999972  467889999999988643322222 235799999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHHHH
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIADW  425 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~i~~~  425 (483)
                      ++++++|+++++++ ++++++++.++|++.|+++   .++++.....+.++.+.+.+...+     ...+......+...
T Consensus       310 aa~la~L~~i~~~~-~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
T PRK00615        310 AAGKASINLCREQG-FYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQS  388 (433)
T ss_pred             HHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHH
Confidence            99999999998754 7999999999998777653   245443222577888887543211     00123445677777


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +++ +||++.+..++.           ..++..||++|||+++++++++++++++
T Consensus       389 l~~-~Gv~~~~~~~~~-----------~~ls~~ht~~did~~~~a~~~~~~~~~~  431 (433)
T PRK00615        389 AFS-KGVYLSPSPFEA-----------SFLSSAHSMENLDYAQNVLIDSLEKVFS  431 (433)
T ss_pred             HHH-CCeeecCccccc-----------cceecCCCHHHHHHHHHHHHHHHHHHhc
Confidence            665 599998765432           2578889999999999999999998864

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=1.2e-39  Score=334.69  Aligned_cols=359  Identities=17%  Similarity=0.178  Sum_probs=269.2

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .|||+||||.++   ..+|| +||+|.+|+.+++++.+..+..+.   .+++...+|+++|++.+
T Consensus        30 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~~~~---~~~~~~~~lae~L~~~~  105 (460)
T PRK06105         30 GPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGF-SEQRLVEAAARQMKKLPFYHTFSH---KSHGPVIDLAEKLVAMA  105 (460)
T ss_pred             CCceEEeeeEEEEEECCCCEEEEcchhHHhccCCC-CCHHHHHHHHHHHHhCCCeecccc---cCCHHHHHHHHHHHHhC
Confidence            47789999999999 899999999987   78999 899999999999998653222111   24678899999999998


Q ss_pred             CC--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCC
Q 011567          168 GT--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHND  224 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d  224 (483)
                      +.  +.+++.+||++|++.|++..         ++|.++|.++..||+.+..++.+++..            +..+++.+
T Consensus       106 p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~  185 (460)
T PRK06105        106 PVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPH  185 (460)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCc
Confidence            64  45667799999999998763         356778999999999987776655422            11122211


Q ss_pred             ------------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          225 ------------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       225 ------------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                                        .+++|+++....      +..+++|++||+++++|.+.|    |++|+++|++||+++|+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~------~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DE  259 (460)
T PRK06105        186 YYRFGLPGESEEAFATRLANELEALILAEG------PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADE  259 (460)
T ss_pred             ccccccCCCChHHHHHHHHHHHHHHHHHcC------CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEec
Confidence                              245666664322      125899999999999998877    9999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCC-----ceeecCCCcHHHH
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSS-----GYVFSASLPPYLA  353 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~-----~~~fs~~~~p~~~  353 (483)
                      ++++  +|++|+++ .+++++.|   ||+  +++|++|.   +.|.+++++++++.+.....     .+.++.+.||+.|
T Consensus       260 v~tG--~GRtG~~f~~~~~~v~P---Di~--~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~  332 (460)
T PRK06105        260 VICG--FGRTGNMFGCETFGIKP---DIL--VMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAA  332 (460)
T ss_pred             cccC--CCcCchhhhHHhcCCCC---Cee--eeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHH
Confidence            9964  45556654 47899988   888  79999973   35667889999988754211     1234446799999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHH
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALK  428 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l~  428 (483)
                      +++.++|++++++ ++.+++++++++|++.|+++..+++.  ....+.+..+.+..+....   .........+...+++
T Consensus       333 aaa~a~L~~i~~~-~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~  411 (460)
T PRK06105        333 AVALENLAIIEER-DLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHE  411 (460)
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH
Confidence            9999999999875 58999999999999999876433322  2345778888774322111   1112234567776654


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                       +||++.+..          ..+|++|+..+|++|||+++++++++++++.
T Consensus       412 -~Gvl~~~~g----------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  451 (460)
T PRK06105        412 -HGVISRAMG----------DTLAFCPPLIITAAQVDEMVDRFGRALDDVA  451 (460)
T ss_pred             -CCeEEEecC----------CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence             699997531          2399999999999999999999999998764

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=9.9e-40  Score=335.33  Aligned_cols=358  Identities=19%  Similarity=0.220  Sum_probs=265.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+|+++....+ +  .+...++...+|.++|++.+
T Consensus        28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~-~--~~~~~~~~~~~lae~L~~~~  103 (459)
T PRK05965         28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGY-GQESIVEAAAEQMRELPYAT-G--YFHFGSEPAIRLAAKLAERA  103 (459)
T ss_pred             CCceEEeeeEeEEEECCCCEEEECcccHHhccCCC-CCHHHHHHHHHHHHhcCCcc-c--ccccCCHHHHHHHHHHHhhC
Confidence            46789999999999 899999999987   68899 89999999999999853311 1  11124577889999999998


Q ss_pred             C--CCCEEEecccHHHHHhhhhh---h------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe--cC
Q 011567          168 G--TPDSILYSYGLSTMFSAIPC---F------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYF--KH  222 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~---~------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~--~~  222 (483)
                      +  .+.+++.+||++|++.|++.   +      ++|..+|.++.+||+.+..++.+++..            +..+  ++
T Consensus       104 p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~  183 (459)
T PRK05965        104 PGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPY  183 (459)
T ss_pred             CCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCc
Confidence            5  34566669999999999864   3      235678999999999876655554321            1111  11


Q ss_pred             -------CCH--------HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          223 -------NDM--------DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       223 -------~d~--------~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                             +|.        +++++.+++..      +.++++|++||+++.+|.+.|    |++|+++|++||++||+||+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~------~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV  257 (459)
T PRK05965        184 PYRNPVGDDPQAIIAASVAALRAKVAELG------ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEV  257 (459)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHhcC------CCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence                   232        45666665432      125899999999999888776    99999999999999999999


Q ss_pred             cccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCc-----eeeccHHHHHHHHhc-------CCceeecCCCcH
Q 011567          284 NSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGG-----FCTGSARVVDHQRLS-------SSGYVFSASLPP  350 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG-----~i~~~~~~~~~~~~~-------~~~~~fs~~~~p  350 (483)
                      +++  +|++|.++ .+++|+.|   ||+  +++|+++  ||     .+++++++++.+...       .++++|  +.||
T Consensus       258 ~tG--fGRtG~~~a~~~~gv~P---Div--~~gKgl~--gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~--~gnp  326 (459)
T PRK05965        258 ITG--FGRTGPLFACEAEGVVP---DLM--TVAKGLT--SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTY--SAHP  326 (459)
T ss_pred             hcc--CccCchhhhHhhcCCCC---CeE--Eechhhc--cCCcceeEEEEcHHHHHHHhccccccccccccCCC--CCCH
Confidence            985  56677655 58999988   898  7999998  55     357889999877532       233344  4699


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCc---hhhHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSM---KNDLQLLEDIADW  425 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~  425 (483)
                      +.|++++++|++++++ ++.+++++++++|++.|+++..+++..  ...+.++.+.+..+....   ..+......+...
T Consensus       327 l~~Aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~  405 (459)
T PRK05965        327 VSAAVGLEVLRLYHEG-GLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDR  405 (459)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHH
Confidence            9999999999999875 489999999999999998764333322  345777888774322111   1112345567777


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +++ +|+++.+...         ..||++|++.+|++||+++++++++++.++...
T Consensus       406 ~~~-~Gll~~~~g~---------~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~  451 (459)
T PRK05965        406 AYA-NGLVFRAFGD---------GVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD  451 (459)
T ss_pred             HHh-CCeEEEecCC---------cEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence            665 5999875321         228999999999999999999999999887543

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=9.5e-40  Score=332.03  Aligned_cols=337  Identities=20%  Similarity=0.246  Sum_probs=267.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .|||+||||.++   ..+|| +||+|.+|+.+++++++..+   +.+  +.+.+.+|+++|+++.
T Consensus        22 ~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~   95 (396)
T PRK04073         22 LPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGH-RHPKIIQALKDQADKVTLTS---RAF--HSDQLGPWYEKVAKLT   95 (396)
T ss_pred             CCceEEeeeecEEEECCCCEEEEcCCCHHhccCCC-CCHHHHHHHHHHHhhccccc---ccc--CCHHHHHHHHHHHhcC
Confidence            46788999999999 899999999987   57999 89999999999999976532   212  4578899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhh-----------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCC
Q 011567          168 GTPDSILYSYGLSTMFSAIPCF-----------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHND  224 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~-----------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d  224 (483)
                      +.+.+++++||++|++.|++..           +++.++|.++..+|+.+..++.+++..            +..++++|
T Consensus        96 ~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (396)
T PRK04073         96 GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGD  175 (396)
T ss_pred             CCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCC
Confidence            9888899999999999998865           356679999999999988777766532            35678889


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~  299 (483)
                      ++++++.+..          ++++|++||+++++|.+.|    |++|+++|++||+++|+||+|++  +|++|.++. ++
T Consensus       176 ~~~l~~~i~~----------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~  243 (396)
T PRK04073        176 LEALKAAITP----------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG--LGRTGKLFACDW  243 (396)
T ss_pred             HHHHHHhccc----------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhC--CCcCcHHHHhhh
Confidence            9888877642          3789999999999999877    89999999999999999999984  577776544 56


Q ss_pred             cCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      +++.|   |++  ++||++|..|   |++++++++++.+.......+|+  .||+.++++.++|+.+++. ++.++.+++
T Consensus       244 ~~~~p---di~--~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aaL~~~~~~-~l~~~~~~~  315 (396)
T PRK04073        244 DNVTP---DMY--ILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFG--GNPLACAVSIAALEVLEEE-KLPERSLEL  315 (396)
T ss_pred             cCCCC---CEE--EecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCC--CCHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            77766   777  6899998543   78899999999876544444444  5899999999999988654 478889999


Q ss_pred             HHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          377 TAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       377 ~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      ++++.+.|+++ +.+..  ..+.++++.+.+..          ...++++++++ +||++.+..         +..|||+
T Consensus       316 ~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~----------~~~~~~~~l~~-~Gv~~~~~~---------~~~iRi~  374 (396)
T PRK04073        316 GEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNE----------PARPYCEALKE-EGLLCKETH---------ETVIRFA  374 (396)
T ss_pred             HHHHHHHHHhh-cCCcccceecceEEEEEEecc----------hHHHHHHHHHH-CCeEEecCC---------CCEEEEE
Confidence            99999999876 32211  12356777777631          12456776555 599987531         1349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~  475 (483)
                      |++.+|++|+++++++|++++
T Consensus       375 p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        375 PPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             CCcccCHHHHHHHHHHHHHHh
Confidence            999999999999999998875

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-39  Score=333.66  Aligned_cols=364  Identities=14%  Similarity=0.208  Sum_probs=270.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .|||+||||.++   ..+|| +||+|.+|+.+++++....+.    .+..++...+|+++|++.+
T Consensus        24 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~lae~L~~~~   98 (445)
T PRK08593         24 YPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGH-APPRVVEAIKAQADKFIHYTP----AYMYHEPLVRLAKKLCELA   98 (445)
T ss_pred             CCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccCccc----cccCCHHHHHHHHHHHHhC
Confidence            36789999999999 899999999986   56999 899999999999998543211    1224688899999999998


Q ss_pred             CC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCC-----
Q 011567          168 GT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHN-----  223 (483)
Q Consensus       168 g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~-----  223 (483)
                      +.   +.+.+.+||++|++.|++   .+++|.++|.++..||+.+..++.+++..             +..++++     
T Consensus        99 p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~  178 (445)
T PRK08593         99 PGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRG  178 (445)
T ss_pred             CCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccc
Confidence            63   345555999999999986   46788899999999999988777665421             2223322     


Q ss_pred             -----CHHHHHHHHHHhhhhhhh--ccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCC
Q 011567          224 -----DMDSLRNTLERVTADNKR--AKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRS  292 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~--~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~  292 (483)
                           +.+.+++.++.......+  .+..+++|++||+++++|.+.|    |++|+++|++||++||+||++++  +|++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg--~Grt  256 (445)
T PRK08593        179 MYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQG--LGRT  256 (445)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcC
Confidence                 222233222221110000  1125899999999999998876    99999999999999999999964  5677


Q ss_pred             CCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHH
Q 011567          293 GRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL  369 (483)
Q Consensus       293 G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~  369 (483)
                      |+++ .+++|+.|   |++  +++|++|.  ++|++++++++++.+...  .+.|+.+.||+.++++.++|+.++++ ++
T Consensus       257 G~~~a~~~~gv~p---Di~--t~gK~l~~G~p~gav~~~~~i~~~~~~~--~~~~T~~~~pl~~aaa~a~l~~l~~~-~l  328 (445)
T PRK08593        257 GKWSSISHFNITP---DLM--SFGKSLAGGMPMSAIVGRKEIMESLEAP--AHLFTTGANPVSCAAALATIDMIEDE-SL  328 (445)
T ss_pred             chHHHHHhcCCCC---CEe--eecccccCCcccEEEEEcHHHHhhhccC--CCCCCCCCCHHHHHHHHHHHHHHHhc-cH
Confidence            7764 58899988   887  79999973  357788999999988533  33445567999999999999999875 58


Q ss_pred             HHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567          370 ITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR  446 (483)
Q Consensus       370 ~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~  446 (483)
                      .++++++.++|++.|+++. .+++.  ....+.++.+.+..+......+......++..+++ +||++.+...       
T Consensus       329 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~-------  400 (445)
T PRK08593        329 LQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAVAG-------  400 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEeccCC-------
Confidence            9999999999999997642 22222  23456677777643221111233455677877665 5999865321       


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                        +.||++|++.+|++||++++++++++++++..
T Consensus       401 --~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        401 --NVLRFQPPLVITYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             --CEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence              34999999999999999999999999988654

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=1.2e-39  Score=331.90  Aligned_cols=348  Identities=17%  Similarity=0.221  Sum_probs=270.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ++||| +||+|.+|+.+++.++....  .   ..+++.+.+|+++|++++
T Consensus        21 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~--~---~~~~~~~~~la~~l~~~~   94 (406)
T PRK12381         21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGH-AHPALREALNEQASKFWHTG--N---GYTNEPVLRLAKKLIDAT   94 (406)
T ss_pred             CCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCC-CCHHHHHHHHHHHhhccccc--C---ccCCHHHHHHHHHHHhhC
Confidence            35678999999999 899999999995   89999 69999999999998752211  1   124577899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMD  226 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~  226 (483)
                      +.+.+++++||++|++.|++..         .++.++|.++..||+.+..++.+++.            .+..+++||++
T Consensus        95 ~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  174 (406)
T PRK12381         95 FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN  174 (406)
T ss_pred             CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence            8888888899999999998764         25677899999999998877776653            24567889999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      ++++.+.+          ++++|++||+++++|.+.|    +++|+++|++||++||+||+|++  +|++|.++. ++++
T Consensus       175 ~l~~~l~~----------~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG--~gr~G~~~~~~~~~  242 (406)
T PRK12381        175 SASALIDD----------QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTG--VGRTGELYAYMHYG  242 (406)
T ss_pred             HHHHhccC----------CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhC--CCCCcchhhhHhhC
Confidence            99987742          3789999999999886643    89999999999999999999964  477777654 6788


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.|   |++  |++|++|+  +-|++++++++++.+....++.+|  +.+|+.++++.++|+.+++ ++++++++++.++
T Consensus       243 v~p---Di~--t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~--~~~pl~~aaa~a~l~~l~~-~~~~~~~~~~~~~  314 (406)
T PRK12381        243 VTP---DVL--TTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTY--GGNPLASAVAGKVLELINT-PEMLNGVKQRHDW  314 (406)
T ss_pred             CCC---CEE--EehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCC--CCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHH
Confidence            877   775  89999972  125668889999887654444444  4589999999999999865 4589999999999


Q ss_pred             HHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +++.|+++. .+.+.  ....+.++.+.+.++      .......+...++ ++||++.+..         ++.||++|+
T Consensus       315 l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~------~~~~~~~~~~~l~-~~Gv~v~~~g---------~~~lRl~p~  378 (406)
T PRK12381        315 FVERLNTINARYGLFSEIRGLGLLIGCVLNAE------YAGKAKQISQEAA-KAGVMVLIAG---------PNVVRFAPA  378 (406)
T ss_pred             HHHHHHHHHhhCCCEEEEecCeEEEEEEecCc------hhhHHHHHHHHHH-HCCcEEeeCC---------CCEEEEeCC
Confidence            999998752 22222  223466777776431      1123446666655 4699986532         234999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          457 AAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +.+|++||++++++|+++++++..+
T Consensus       379 ~~~t~~~i~~~~~~l~~~l~~~~~~  403 (406)
T PRK12381        379 LNISEEEITTGLDRFARACERFVSR  403 (406)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999886543

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=334.68  Aligned_cols=357  Identities=16%  Similarity=0.183  Sum_probs=264.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+|+++.......   ...+++...+|+++|++.+
T Consensus        32 ~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh-~~p~v~~Av~~q~~~~~~~~~~---~~~~~~~~~~lAe~L~~~~  107 (461)
T PRK07482         32 PGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGY-GRTEVAEAIAEQAKELAYYHTY---VGHGTEASITLSKRIIDRA  107 (461)
T ss_pred             CCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCC-CCHHHHHHHHHHHHhcCccccc---cccCCHHHHHHHHHHHHhC
Confidence            36789999999999 899999999997   68999 8999999999999985321111   1124678899999999988


Q ss_pred             C--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe--cC
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYF--KH  222 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~--~~  222 (483)
                      +  .+.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++..            +..+  ++
T Consensus       108 p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~  187 (461)
T PRK07482        108 PAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPH  187 (461)
T ss_pred             CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCc
Confidence            5  456777799999999998754         236678889999999876666554421            1111  11


Q ss_pred             --C--------------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          223 --N--------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       223 --~--------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                        +              +.+.|++.+....      +..+++|++||+++++|.+.|    |++|+++|++||++||+||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DE  261 (461)
T PRK07482        188 YYRRADAGMSEEQFSAYCADELEELILAEG------PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADE  261 (461)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhcC------CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEec
Confidence              1              2355666664321      225899999999999888866    8999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhc-------CCceeecCCCc
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLS-------SSGYVFSASLP  349 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~-------~~~~~fs~~~~  349 (483)
                      ++++  +|++|+++ .+++|+.|   ||+  +++|+++  |||     +++++++++.+...       .++++|  +.|
T Consensus       262 V~tG--fGRtG~~~a~~~~gv~P---Div--~~gKgl~--gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~--~gn  330 (461)
T PRK07482        262 VVTG--FGRLGSMFGSDHYGIEP---DLI--TVAKGLT--SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTY--SGH  330 (461)
T ss_pred             cccC--CCcCcchhhHHhcCCCC---CEE--EEccccc--cCccccceeeecHHHHHHHhcccccCCccccCCCC--CcC
Confidence            9985  56677665 58999998   898  6999997  443     46788888877532       133344  469


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC-CCcee--ecCCCCCEEEEEecCCCCC---chhhHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI-HGLSI--ASNPESPIVFLILEKSTGS---MKNDLQLLEDIA  423 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~-~~~~i--~~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~  423 (483)
                      |+.|+++.++|+.++++ ++.++++++.++|++.|+++ ..+++  .....+.++.+.+..+...   .+.......+++
T Consensus       331 pl~~Aaa~a~L~~~~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~  409 (461)
T PRK07482        331 PICAAAALANLDILERE-NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVS  409 (461)
T ss_pred             HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHH
Confidence            99999999999999875 48999999999999999754 12222  2235677888888532211   111122356777


Q ss_pred             HHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          424 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       424 ~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ..+++ +|+++.+...        ...+|+.|++.+|++||++++++++++++++.
T Consensus       410 ~~~~~-~Gvl~~~~~~--------~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~  456 (461)
T PRK07482        410 AAALE-RGVIARAMPH--------GDILGFAPPLVLTRAEADEIVAIAKDAVDEVL  456 (461)
T ss_pred             HHHHH-CCcEEecCCC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            77765 5998854211        13499999999999999999999999998764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=1.3e-39  Score=331.15  Aligned_cols=349  Identities=16%  Similarity=0.168  Sum_probs=266.7

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      ++++.++.|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+++....+   +  +..++...+++++|++.++
T Consensus        58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~~---~--~~~~~~~~~lAe~L~~~~p  131 (442)
T TIGR03372        58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLHS---Q--ELLDPLRALLAKTLAALTP  131 (442)
T ss_pred             eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCcc---c--ccCCHHHHHHHHHHHHhCC
Confidence            3445777889999 899999999987   67899 89999999999999864321   1  2346788999999999986


Q ss_pred             C--CCEEEecccHHHHHhhhhh---hc---cCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHHH
Q 011567          169 T--PDSILYSYGLSTMFSAIPC---FC---KKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDSL  228 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~~---~~---~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~L  228 (483)
                      .  +.+++++||++|++.|++.   ++   ++.++|.++..||+.+...+.+++.            .+..++++|.+.+
T Consensus       132 ~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~  211 (442)
T TIGR03372       132 GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAM  211 (442)
T ss_pred             CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHH
Confidence            4  3456669999999999764   33   5667899999999988777766442            2355677899888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCC
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVP  303 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~  303 (483)
                      ++.+++...    .+..+++|++||+++++|.+.|    |++++++|++||+++|+||++++  +|++|+++ .+++|+.
T Consensus       212 ~~~l~~~~~----~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~gv~  285 (442)
T TIGR03372       212 LKALNECKK----TGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTG--MGRTGKMFACEHEGVQ  285 (442)
T ss_pred             HHHHHHHhc----CCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccC--CCccccchhhhhcCCC
Confidence            888865321    1235899999999999999888    99999999999999999999974  68888875 5889998


Q ss_pred             CCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      |   ||+  +|+|++|.   +.|.+++++++++.+......+..+.+.||+.|++++++|+.+++++ +.++.++++++|
T Consensus       286 P---Div--t~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~-l~~~~~~~G~~l  359 (442)
T TIGR03372       286 P---DIL--CLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKN-LPAQAAIKGDFL  359 (442)
T ss_pred             C---Cee--eehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence            8   887  69999982   23445678899888742211121222459999999999999998754 889999999999


Q ss_pred             HHhhccCC-Cce---eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          381 RTGLSDIH-GLS---IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       381 ~~~L~~~~-~~~---i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      ++.|+++. .++   ......+.++.+.+.++        .....++..+++ +||++....+.       +..|||+|+
T Consensus       360 ~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~--------~~~~~i~~~l~~-~Gvl~~~~~~~-------~~~lr~~Pp  423 (442)
T TIGR03372       360 LDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN--------EIGYAFAKELFQ-QNILVAGTLNN-------AKSIRIEPP  423 (442)
T ss_pred             HHHHHHHHHhCCCceEEEecceEEEEEEeCCh--------HHHHHHHHHHHH-CCcEEeecCCC-------CCEEEEECC
Confidence            99987652 122   11235688888888432        234567777665 59999754321       134999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRIS  475 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+|++|+|++++++++++
T Consensus       424 l~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       424 LTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             cccCHHHHHHHHHHHHHhC
Confidence            9999999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-40  Score=305.74  Aligned_cols=365  Identities=24%  Similarity=0.323  Sum_probs=294.9

Q ss_pred             CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHh
Q 011567           63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEK  138 (483)
Q Consensus        63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~  138 (483)
                      .++.+++.++-.++....++|-        |.++++++|.++| ..||+|+||.+.   -.-|| +||.|.+++.+|.++
T Consensus        20 ~~aS~~~~~~E~k~~ahnyhpL--------pvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGh-chpki~~aLqeq~~k   90 (427)
T KOG1402|consen   20 TTASQQIMERENKYGAHNYHPL--------PVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGH-CHPKIIKALQEQADK   90 (427)
T ss_pred             ccchhhhhchhhhcccccCCcC--------ceEEEecCCcEEECCCccchhhhhhhhhhcccCC-CCHHHHHHHHHHHhH
Confidence            6777777777777776666643        6779999999999 899999999986   45688 899999999999998


Q ss_pred             cCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc------c-----CCcEEEEcCCchhHHH
Q 011567          139 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC------K-----KGDLIVADEGVHWGIQ  207 (483)
Q Consensus       139 ~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~------~-----~gdiI~~~~~~h~s~~  207 (483)
                      ...   .+|.||  .++..++++.+++++|.+..+-+++|.+|+++|++...      |     +..++.+...+|+.+.
T Consensus        91 Ltl---ssrafY--nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~  165 (427)
T KOG1402|consen   91 LTL---SSRAFY--NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTL  165 (427)
T ss_pred             hhh---hhHHHh--hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCcee
Confidence            543   455665  47889999999999999999999999999999976543      1     2346677888998888


Q ss_pred             hHhhhcCCe-------------EEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHH
Q 011567          208 NGLYLSRST-------------VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRL  270 (483)
Q Consensus       208 ~g~~~s~~~-------------v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l  270 (483)
                      .++.+++..             +..++++|.++|+..|++  .       ..+.+++||+++..|.+.|    |++.++|
T Consensus       166 ~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~--~-------~vaaFivEPIQGEaGVvvP~~GYL~~vreL  236 (427)
T KOG1402|consen  166 GAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS--P-------NVAAFIVEPIQGEAGVVVPPPGYLKKVREL  236 (427)
T ss_pred             eeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC--C-------CeeEEEeeccccccceEeCCchhHHHHHHH
Confidence            777766533             567788999999999976  2       4889999999999999988    9999999


Q ss_pred             HHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhcCCceee
Q 011567          271 KEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       271 ~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~~~~~~f  344 (483)
                      |.||++++|.||+|++  +|+||+.++ +|-++.|   |++  -++|+|+  ||+     ++++++++..+....++.+|
T Consensus       237 Ctkynvl~I~DEvQTG--l~RTGk~la~d~env~P---Div--ilgKalS--GG~~Pvsavl~~~~im~~~~pgeHgsTy  307 (427)
T KOG1402|consen  237 CTKYNVLLIADEVQTG--LARTGKLLACDYENVRP---DIV--ILGKALS--GGVYPVSAVLADDDIMLNIKPGEHGSTY  307 (427)
T ss_pred             HHhhcEEEEehhhhhc--ccccCcEEEeehhhcCC---CeE--EEecccc--CCeeeeEEEEecHHHHhccCCCcccccc
Confidence            9999999999999997  899999876 8888888   888  4999998  776     47889999998888888888


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Cc---eeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH-GL---SIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~---~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      ++  ||+.|+++.++|+++.++ ++.++...++..|+.+|.+++ .+   --...+.+.+..+.+.....    ....+.
T Consensus       308 gg--NpLg~~vaiAalevi~ee-kL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~----~~~~aw  380 (427)
T KOG1402|consen  308 GG--NPLGCAVAIAALEVIVEE-KLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT----SGQDAW  380 (427)
T ss_pred             CC--ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc----cchhHH
Confidence            76  899999999999999885 599999999999999998874 22   11123466677777643221    223455


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      +++-. ++++|++..+...         .-||+.|+..++++|+++.+++|.+++.
T Consensus       381 ~~cl~-lk~~g~LAkptH~---------~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  381 DVCLA-LKENGLLAKPTHG---------NIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             HHHHc-ccccccccCCCCC---------CeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            66653 5667888766432         2299999999999999999999998763

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=1.6e-39  Score=332.88  Aligned_cols=375  Identities=18%  Similarity=0.227  Sum_probs=273.5

Q ss_pred             HHHHHHhhcCCCCCCccccccc--ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567           68 EIDELCDEWVPESLIPPIIEEM--RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      ++.+...+..|-..........  .+.|.++++++|.|+| +||++||||.++   ..+|| +||+|.+++.+++++...
T Consensus        55 ~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh-~~p~v~~av~~ql~~~~~  133 (474)
T PLN02482         55 EIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGH-ADDEVLAALAETMKKGTS  133 (474)
T ss_pred             HHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCC-CCHHHHHHHHHHHhhCCC
Confidence            3444444555555432222111  1347789999999999 899999999986   67999 899999999999997421


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhhC-CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHh--Hhh----
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFLG-TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQN--GLY----  211 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~g-~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~--g~~----  211 (483)
                             +....+...+|.++|++.++ .+.+.+++||++|++.|++   ++++|.++|.+...||+....  ...    
T Consensus       134 -------~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~  206 (474)
T PLN02482        134 -------FGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGV  206 (474)
T ss_pred             -------CCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCc
Confidence                   22245778899999999886 4566677999999999975   567898999999999985421  110    


Q ss_pred             -------hcC------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHc
Q 011567          212 -------LSR------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKY  274 (483)
Q Consensus       212 -------~s~------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~  274 (483)
                             ..+      ..+..+++||+++|++.+++...       .+++|++||+++++|.+.|    |++|+++|++|
T Consensus       207 ~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~-------~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~  279 (474)
T PLN02482        207 ATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKG-------EIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN  279 (474)
T ss_pred             cccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCC-------ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence                   001      13567899999999999875433       4899999999999999887    78999999999


Q ss_pred             CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCcee-ecCCCcHH
Q 011567          275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPPY  351 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p~  351 (483)
                      |++||+||++++.+.|.  .|..+++|+.|   |++  +|+|++|.  +-|.+++++++++.+...+..+. .+.+.+|+
T Consensus       280 g~lLI~DEV~tGfR~g~--~ga~~~~gv~P---Di~--t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl  352 (474)
T PLN02482        280 GALLVFDEVMTGFRIAY--GGAQEYFGITP---DLT--TLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPL  352 (474)
T ss_pred             CCEEEEeccccCeecCc--chHhHHhCCCC---CEE--EecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHH
Confidence            99999999997554442  45568899987   886  79999982  11334789999998864322222 12246899


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCC-----CchhhHHHHHHHH
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTG-----SMKNDLQLLEDIA  423 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~-----~~~~~~~~~~~i~  423 (483)
                      .+++++++|+++++. ++++++.++.++|+++|.++.   ++++.......++.+.+..+..     ....+......+.
T Consensus       353 ~~aAala~L~~l~~~-~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~  431 (474)
T PLN02482        353 AMTAGIHTLKRLQQP-GTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFH  431 (474)
T ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHH
Confidence            999999999999764 589999999999999997751   3444322234477776643210     0111333456777


Q ss_pred             HHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          424 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       424 ~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..|++ +||++.+..++.          + .+++.||++|||++++++++++++
T Consensus       432 ~~l~~-~Gv~~~~~~~~~----------~-~psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        432 RGMLE-EGVYLAPSQFEA----------G-FTSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             HHHHH-CCeEEeccCCCC----------C-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence            77765 599998754421          1 378999999999999999999865

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=2.3e-39  Score=331.78  Aligned_cols=351  Identities=15%  Similarity=0.190  Sum_probs=266.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   ..+|| +||+|.+|+.+|+++......    ...+++...+|.++|++.+
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~lAe~L~~~~  110 (453)
T PRK06943         36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGH-ANPRINAALKDQLDTLEHAML----AGCTHEPAIELAERLAALT  110 (453)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCC-CCHHHHHHHHHHHHhcCCccc----cccCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999997   67999 899999999999998643221    1124578889999999998


Q ss_pred             CC--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC-
Q 011567          168 GT--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN-  223 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~-  223 (483)
                      +.  +.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++..            +..++.. 
T Consensus       111 p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~  190 (453)
T PRK06943        111 GGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPD  190 (453)
T ss_pred             CCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCC
Confidence            74  45667799999999998764         346779999999999887766665422            1112211 


Q ss_pred             ----------------CHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          224 ----------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       224 ----------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                                      |+++++++++...       ..+++|++||+ ++++|.+.|    |++|+++|++||++||+||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DE  263 (453)
T PRK06943        191 ARGARPGETAADVAARALADVRRLFAERA-------GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADE  263 (453)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHhCC-------CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeec
Confidence                            2355666665322       25999999994 888888766    9999999999999999999


Q ss_pred             ccccccccCCCCccc-cccCCCCCceeEEEccccccccCCCc-----eeeccHHHHHHHHhc------CCceeecCCCcH
Q 011567          283 SNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGG-----FCTGSARVVDHQRLS------SSGYVFSASLPP  350 (483)
Q Consensus       283 a~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~GG-----~i~~~~~~~~~~~~~------~~~~~fs~~~~p  350 (483)
                      ++++  +|++|+++. +++|+.|   ||+  +++|+++  ||     .+++++++++.+...      .++.+|  +.||
T Consensus       264 V~TG--~GRtG~~fa~~~~gv~P---Div--t~gKgl~--gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~--~gnp  332 (453)
T PRK06943        264 IAVG--CGRTGTFFACEQAGVWP---DFL--CLSKGIS--GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY--TGNP  332 (453)
T ss_pred             hhhC--CCCCcchhHHHhCCCCC---CeE--eeehhhc--cCcccceEEEEcHHHHHhhcccCccCCccCCCCC--CCCH
Confidence            9975  577776654 8899998   898  7999998  44     357889998877532      123333  4599


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                      +.|++++++|+++++++ +.++++++.++|++.|+++...+..  ....+.++.+.+..+.   +.......++...+++
T Consensus       333 l~~aaa~a~L~~i~~~~-l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~~~~  408 (453)
T PRK06943        333 LACRAALATLDLFAEDD-VLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEAALE  408 (453)
T ss_pred             HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHHHHH
Confidence            99999999999998754 8999999999999999775322221  2346778888875321   1122335567777665


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                       +||++.+..          ..+|++|+..+|++|||+++++++++++++..
T Consensus       409 -~Gll~~~~g----------~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  449 (453)
T PRK06943        409 -RELLLRPIG----------TTVYLMPPYVLDDDEIAWLAERTRATLDATLA  449 (453)
T ss_pred             -CCcEEEecC----------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence             599986532          22899999999999999999999999988753

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=331.66  Aligned_cols=355  Identities=17%  Similarity=0.229  Sum_probs=267.2

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      +.|.++++++|.|+| +|||+||||.++   ..+|| +||+|.+|+.+++++.....  +   ...++...+|.++|+++
T Consensus        34 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~--~---~~~~~~~~~lae~L~~~  107 (451)
T PRK06062         34 INPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGH-QHPKVVAAIQEQAARLCTVA--P---AHANDARSEAARLIAER  107 (451)
T ss_pred             CCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCC-CCHHHHHHHHHHHHhcCCcC--C---ccCCHHHHHHHHHHHHh
Confidence            357889999999999 899999999997   67999 89999999999999853211  1   12467889999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCeE-----------EEe--c------C
Q 011567          167 LG--TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRSTV-----------VYF--K------H  222 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v-----------~~~--~------~  222 (483)
                      ++  .+.+++.+||++|++.|++   .+++|..+|.+...||+.+..++.+++...           ..+  +      .
T Consensus       108 ~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  187 (451)
T PRK06062        108 APGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEF  187 (451)
T ss_pred             CCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCcccccc
Confidence            86  3566677999999999975   467888899999999999877776654211           111  1      1


Q ss_pred             ---CC-------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          223 ---ND-------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       223 ---~d-------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                         +|       +++|+++++...      +.++++|++||+++++|.+.|    |++|+++|++||++||+||++++  
T Consensus       188 ~~~~~~~~~~~~~~~le~~l~~~~------~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tG--  259 (451)
T PRK06062        188 HATTEEEECERALAHLERVIELEG------PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAG--  259 (451)
T ss_pred             CCCChHHHHHHHHHHHHHHHHhcC------CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccC--
Confidence               23       456666664321      125899999999999999988    99999999999999999999985  


Q ss_pred             ccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc--CCceeecCCCcHHHHHHHHHHHHH
Q 011567          289 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDV  362 (483)
Q Consensus       289 lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~--~~~~~fs~~~~p~~~aaa~~al~~  362 (483)
                      +|++|+++ .+++|+.|   ||+  +++|++|.   +-|.+++++++++.+...  .++++|+  .+|+.|++++++|++
T Consensus       260 fGRtG~~~a~~~~gv~P---Di~--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~--gnpl~~Aaa~a~L~~  332 (451)
T PRK06062        260 FGRTGKWFAIEHFGVVP---DLI--TFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYS--GHPLACAAAVATINA  332 (451)
T ss_pred             CCcCcHHHHHHhcCCCC---Cee--eechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCC--CCHHHHHHHHHHHHH
Confidence            68888775 58999988   887  79999982   123456778899988643  2444554  489999999999999


Q ss_pred             HhcCcHHHHHHHHHH-HHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCc------hhhHHHHHHHHHHHHHhCCE
Q 011567          363 LEENPDLITKLKKNT-AILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSM------KNDLQLLEDIADWALKEDGV  432 (483)
Q Consensus       363 l~~~~~~~~~l~~~~-~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~------~~~~~~~~~i~~~~l~~~Gv  432 (483)
                      +++++ +.+++++++ +++++.|+++. .+++  .....+.++.+.+..+....      .........+...+++ +||
T Consensus       333 l~~~~-l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv  410 (451)
T PRK06062        333 MEEEG-IVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKE-RGL  410 (451)
T ss_pred             HHhcC-HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHH-CCc
Confidence            98765 889999998 58888887652 2222  12345778888875321110      0012235567776665 599


Q ss_pred             EEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          433 FVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       433 ~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++.+..          ..+|++|++.+|++|||+++++++++++++
T Consensus       411 l~~~~~----------~~lrl~ppl~~t~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        411 LPFVNG----------NRIHVVPPCTVTEDEVREGLAILDAALAVA  446 (451)
T ss_pred             EEeecC----------CEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence            976421          339999999999999999999999999765

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4e-39  Score=330.92  Aligned_cols=384  Identities=18%  Similarity=0.204  Sum_probs=278.4

Q ss_pred             CCCCCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHH
Q 011567           60 PKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSA  135 (483)
Q Consensus        60 ~~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~  135 (483)
                      .+..++.+++.+.-++..+.|+... .......|.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q   84 (460)
T PRK06916          7 DKPSYTYEELSEKNKAYVWHPFTQM-KDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGH-QVPELDEAIREQ   84 (460)
T ss_pred             CCCCCChHHHHHHHhhccccccccc-cccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCC-CCHHHHHHHHHH
Confidence            3446777776655444333232211 11111347889999999999 899999999986   57899 899999999999


Q ss_pred             HHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchh
Q 011567          136 LEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHW  204 (483)
Q Consensus       136 l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~  204 (483)
                      +++....+.    +..+++...+|+++|+++++.  +.+++.+||++|++.|++..         ++|..+|.+...||+
T Consensus        85 l~~l~~~~~----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG  160 (460)
T PRK06916         85 LNKIAHSTL----LGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHG  160 (460)
T ss_pred             HHhCCCccc----cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCc
Confidence            998543221    122457789999999999864  46667799999999998643         346679999999999


Q ss_pred             HHHhHhhhcCCe------------EEEecCC-----------------CHHHHHHHHHHhhhhhhhccCccEEEEEec-c
Q 011567          205 GIQNGLYLSRST------------VVYFKHN-----------------DMDSLRNTLERVTADNKRAKKLRRYIVVEA-V  254 (483)
Q Consensus       205 s~~~g~~~s~~~------------v~~~~~~-----------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v  254 (483)
                      .+..++.+++..            +..++..                 +.+.+++.++...       ..+++|++|| +
T Consensus       161 ~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~iAAvi~EP~i  233 (460)
T PRK06916        161 DTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKH-------EEIAAIIVEPLV  233 (460)
T ss_pred             ccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCC-------CcEEEEEEeccc
Confidence            888777766522            1112111                 2344555554322       3589999999 6


Q ss_pred             cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----
Q 011567          255 YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----  324 (483)
Q Consensus       255 ~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----  324 (483)
                      ++.+|.+.|    |++|+++|++||++||+||++++  +|++|.++ .+++|+.|   ||+  +++|+++  |||     
T Consensus       234 qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG--~GRtG~~~a~~~~gv~P---Div--~~gK~l~--gG~~Pi~a  304 (460)
T PRK06916        234 QGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATG--FGRTGKMFACEHENVTP---DIM--TAGKGLT--GGYLPIAI  304 (460)
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhC--CCcCchhhHHHhcCCCC---Cee--eeehhhh--cCccccce
Confidence            988888765    99999999999999999999975  57777765 48899988   888  7999998  554     


Q ss_pred             eeccHHHHHHHHhc-------CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cC
Q 011567          325 CTGSARVVDHQRLS-------SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SN  395 (483)
Q Consensus       325 i~~~~~~~~~~~~~-------~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~  395 (483)
                      +++++++++.+...       .++.+|  +.||+.|+++.++|+.+++. ++.++++++.++|++.|+++...++.  ..
T Consensus       305 v~~~~ei~~~~~~~~~~~~~~~~~~T~--~gnpl~~aaa~a~l~~l~~~-~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr  381 (460)
T PRK06916        305 TVTTDEIYNAFYGDYEEQKTFFHGHSY--TGNPLGCAVALANLELYEKT-NLIEQVARKTEYVATQLEDLFALKHVGDIR  381 (460)
T ss_pred             eeecHHHHHHhhccccccCccccCCCC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhcCCCeEEee
Confidence            57888998876421       123344  45999999999999999875 48999999999999999876433322  23


Q ss_pred             CCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSM---KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ..+.++.+.+..+....   ..+......+...+++ +||++.+..          ..+|+.|++.+|++||++++++++
T Consensus       382 G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~g----------~~l~~~Ppl~it~~~id~~~~~l~  450 (460)
T PRK06916        382 QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRE-LGMLTRPLG----------NTIVFMPPLASTIDELDEMLRILY  450 (460)
T ss_pred             cCCceeeEEeecccccccCCCchhhHHHHHHHHHHH-CCeEEEecC----------CEEEEeCCcccCHHHHHHHHHHHH
Confidence            45778888775432211   1122234567777665 599997542          238999999999999999999999


Q ss_pred             HHHHHHH
Q 011567          473 RISAVVL  479 (483)
Q Consensus       473 ~~~~~~~  479 (483)
                      ++++++-
T Consensus       451 ~~l~~~~  457 (460)
T PRK06916        451 KAISDVT  457 (460)
T ss_pred             HHHHhhc
Confidence            9998754

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=7.5e-39  Score=327.13  Aligned_cols=375  Identities=18%  Similarity=0.260  Sum_probs=275.0

Q ss_pred             HHHHHHhhcCCCCCCccccccc---ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcC
Q 011567           68 EIDELCDEWVPESLIPPIIEEM---RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYG  140 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~~---~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g  140 (483)
                      +.-+...++.|-+.........   .+.|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+++..
T Consensus         8 ~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~   86 (428)
T PRK12389          8 ALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGH-AHPHITKAITEAAENGV   86 (428)
T ss_pred             HHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCC
Confidence            4444455566665433222111   1346789999999999 899999999887   56999 89999999999999742


Q ss_pred             CCCCCCCCcccChHHHHHHHHHHHhhhC-CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcC--
Q 011567          141 VGSCGPRGFYGTIDVHLDCEARIAKFLG-TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSR--  214 (483)
Q Consensus       141 ~g~~~~~~~~g~~~~~~~l~~~La~~~g-~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~--  214 (483)
                      .       +..+++...++.++|++.++ .+.+.+.+||++|++.|++   .+++|..+|.+...||+.+...+..++  
T Consensus        87 ~-------~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~  159 (428)
T PRK12389         87 L-------YGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSG  159 (428)
T ss_pred             c-------cCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCc
Confidence            2       12245778999999999875 4566677999999999975   456888899999999997765554432  


Q ss_pred             -----------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHH
Q 011567          215 -----------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEK  273 (483)
Q Consensus       215 -----------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k  273 (483)
                                       ..+..+++||++.+++.+++...       .+++|++||+++++|.+.|    |++|+++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~  232 (428)
T PRK12389        160 PSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD-------EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHE  232 (428)
T ss_pred             ccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCC-------cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence                             13456788999999998875433       4899999999999999888    9999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee-cCCCcH
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPP  350 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f-s~~~~p  350 (483)
                      ||++||+||++++++++.  .|..+++|+.|   ||+  +++|++|.  +-|.+++++++++.+...+..+.+ +.+.||
T Consensus       233 ~g~llI~DEV~tG~Rt~~--~~a~~~~gv~P---Div--t~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnp  305 (428)
T PRK12389        233 AGALVIYDEVITAFRFMY--GGAQDLLGVEP---DLT--ALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNP  305 (428)
T ss_pred             cCCEEEEEccccccccCc--chhhHHhCCCC---Cee--eechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCH
Confidence            999999999998754432  34567899988   887  89999972  113357889999987532222233 225799


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSM-----KNDLQLLEDI  422 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~-----~~~~~~~~~i  422 (483)
                      +.|++++++|+.++++ ++.++++++.++|++.|+++.   ++.........++.+.+.......     ..+......+
T Consensus       306 l~~Aaala~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~  384 (428)
T PRK12389        306 ASMAAGIACLEVLQQE-GVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKF  384 (428)
T ss_pred             HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHH
Confidence            9999999999999875 489999999999999997641   322221112337777764321110     0122345667


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ...+++ +||++.+..++           .+.+++.+|++||+++++++++++++
T Consensus       385 ~~~l~~-~Gv~~~~~~~~-----------~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        385 FKLMLN-QGINLAPSKYE-----------AWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             HHHHHH-CCcEeecCCCC-----------CeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            776665 59999764322           14578899999999999999999865

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.1e-38  Score=327.25  Aligned_cols=351  Identities=14%  Similarity=0.156  Sum_probs=261.9

Q ss_pred             CccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567           94 PVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT  169 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~  169 (483)
                      ..+++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+|++++...++.    .-+++...+|.++|++.++.
T Consensus        48 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~l~~~~~~----~~~~~~~~~lae~L~~~~p~  122 (472)
T PRK08742         48 VPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGH-AEPRIGAAIAAQAGELEQVMLA----GFTHEPAVQLAEQLLAIAPR  122 (472)
T ss_pred             eeEEecccCEEEeCCCCEEEEcCccHHhccCCC-CCHHHHHHHHHHHHhCCCcccc----ccCCHHHHHHHHHHHHhCCC
Confidence            468999999999 899999999997   67999 8999999999999976543221    12357788999999998853


Q ss_pred             -------CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEec
Q 011567          170 -------PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFK  221 (483)
Q Consensus       170 -------e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~  221 (483)
                             +.+++.+||++|++.|++..         ++|..+|.+..+||+.+..++.+++..            +..++
T Consensus       123 ~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~  202 (472)
T PRK08742        123 QDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAP  202 (472)
T ss_pred             cccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeC
Confidence                   45666799999999998653         346779999999999988777765432            11222


Q ss_pred             CCC-----------------HHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCccC----hHHHHHHHHHcCcEEE
Q 011567          222 HND-----------------MDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIAP----LDELIRLKEKYRFRVF  279 (483)
Q Consensus       222 ~~d-----------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~~----L~~l~~l~~k~~~~li  279 (483)
                      .++                 .+.+++.++..       +..+++|++|| +++.+|.+.|    |++++++|++||++||
T Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI  275 (472)
T PRK08742        203 SPDAYLAEPGQSAEDYALQAADALQALFEQS-------PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLI  275 (472)
T ss_pred             CCCccccccCCCHHHHHHHHHHHHHHHHHhC-------CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            221                 34445555422       23589999999 5888887665    9999999999999999


Q ss_pred             EeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCc-----eeeccHHHHHHHHhc------CCceeecCC
Q 011567          280 LDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGG-----FCTGSARVVDHQRLS------SSGYVFSAS  347 (483)
Q Consensus       280 ~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG-----~i~~~~~~~~~~~~~------~~~~~fs~~  347 (483)
                      +||++++  +|++|.++ .+++|+.|   ||+  +++|++|  ||     .+++++++++.+...      .++.+|  +
T Consensus       276 ~DEV~TG--fGRtG~~~a~e~~gv~P---Div--~~gKgl~--gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~--~  344 (472)
T PRK08742        276 ADEIATG--FGRTGTLFACEQAGVMP---DLL--CLSKGLT--GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSY--T  344 (472)
T ss_pred             EechhhC--CCCCccchHHHhcCCCC---CEE--EEccccc--CCCCCcceeeccHHHHHHhhccCccCccCcCCCC--C
Confidence            9999975  56677655 58899988   898  7999997  44     357788998876421      123334  4


Q ss_pred             CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHH
Q 011567          348 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDI  422 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i  422 (483)
                      .+|+.|+++.++|++++++ ++.++.++++++|++.++.+..+++.  ....+.++.+.+..+....   ..+.....++
T Consensus       345 gnpl~~Aaa~a~L~~i~~~-~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~  423 (472)
T PRK08742        345 GNPLACAAALATLDIFADD-DVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHA  423 (472)
T ss_pred             ccHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHH
Confidence            5999999999999999875 48899999999998777655333322  2346778888875432211   1122334567


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ...+++ +||++.+..          ..|||.|++.+|++||++++++|+++++++.
T Consensus       424 ~~~~~~-~Gll~~~~g----------~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        424 YRAALA-RGVVLRPLG----------DVLYWMPPYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             HHHHHH-CCeEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            777765 599997532          2399999999999999999999999998865

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=1.5e-39  Score=330.56  Aligned_cols=342  Identities=16%  Similarity=0.198  Sum_probs=261.6

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.++| .|||+||||.++   +.+|| +||+|.+|+++|+++......    ...+++...+|.++|++.++
T Consensus        26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~----~~~~~~~~~~la~~L~~~~p  100 (428)
T PRK07986         26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF----GGITHPPAIELCRKLVAMTP  100 (428)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCC-CCHHHHHHHHHHHhhcCCccc----cccCCHHHHHHHHHHHhhCC
Confidence            3568999999999 899999999997   68999 899999999999998543211    11245788999999999986


Q ss_pred             C--CCEEEecccHHHHHhhhhhh--------ccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEE------
Q 011567          169 T--PDSILYSYGLSTMFSAIPCF--------CKKGDLIVADEGVHWGIQNGLYLSRST-------------VVY------  219 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~~~--------~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~------  219 (483)
                      .  +.+++.+||++|++.|++..        ++|.++|.+..+||+.+..++.+++..             +..      
T Consensus       101 ~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~  180 (428)
T PRK07986        101 QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQS  180 (428)
T ss_pred             CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCc
Confidence            4  45666699999999998643        346789999999999876666554311             111      


Q ss_pred             -----ecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccc
Q 011567          220 -----FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVL  289 (483)
Q Consensus       220 -----~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~l  289 (483)
                           +.+||++++++.++....       .+++|++||+ +..+|.+.|    |++|+++|++||++||+||++++  +
T Consensus       181 ~~~~~~~~~d~~~l~~~l~~~~~-------~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG--~  251 (428)
T PRK07986        181 RFDGEWDERDIAPFARLMAAHRH-------EIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATG--F  251 (428)
T ss_pred             ccchhhHHHHHHHHHHHHHhCCC-------cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--C
Confidence                 124677788887764322       4899999997 566565443    99999999999999999999954  5


Q ss_pred             cCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhcC-----CceeecCCCcHHHHHHHHH
Q 011567          290 GRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLSS-----SGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       290 g~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~~-----~~~~fs~~~~p~~~aaa~~  358 (483)
                      |++|+++ .+++|+.|   ||+  +++|+++  |||     +++++++++.++...     ++.+|+  .||+.|+++.+
T Consensus       252 GrtG~~fa~~~~gv~P---Di~--t~gK~l~--gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~--g~p~~~aaa~a  322 (428)
T PRK07986        252 GRTGKLFACEHAGIAP---DIL--CLGKALT--GGTMTLSATLTTREVAETISNGEAGCFMHGPTFM--GNPLACAVANA  322 (428)
T ss_pred             ccCCCeeeecccCCCC---CEE--Eechhhh--CCcccCcchhchHHHHHHhhcCCCCccccCCCCC--cCHHHHHHHHH
Confidence            8888875 48899988   888  6999997  665     367889999886532     344444  58999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe
Q 011567          359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT  436 (483)
Q Consensus       359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~  436 (483)
                      +|++++++ +++++++++.++|++.|+++..++..+  ...+.++.+.+..+.        ....+...+++ +|+++.+
T Consensus       323 ~L~~i~~~-~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~-~Gl~~~~  392 (428)
T PRK07986        323 SLSLLESG-DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVE-QGVWIRP  392 (428)
T ss_pred             HHHHHHhC-CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHH-CCcEEEe
Confidence            99999875 479999999999999998763333222  245778888875331        13356666555 5999875


Q ss_pred             ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          437 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       437 ~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..          ..||++|++.+|++||++++++|++++.+
T Consensus       393 ~g----------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        393 FG----------KLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             cC----------CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            42          23999999999999999999999999854

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.1e-39  Score=327.02  Aligned_cols=345  Identities=17%  Similarity=0.232  Sum_probs=262.6

Q ss_pred             CccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-
Q 011567           94 PVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-  168 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-  168 (483)
                      .++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++......    ..-+++...+|.++|++.++ 
T Consensus        28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~----~~~~~~~~~~lae~L~~~~p~  102 (429)
T PRK06173         28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGY-NHPRLNAAATNQLAKMSHIMF----GGFTHEPAVELAQKLLEILPP  102 (429)
T ss_pred             ceEEeceeeEEEcCCCCEEEEccchHHhccCCC-CCHHHHHHHHHHHHhcCCccc----cccCCHHHHHHHHHHHhhCCC
Confidence            358999999999 899999999986   68899 899999999999998643111    11246788999999999985 


Q ss_pred             -CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCC--
Q 011567          169 -TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHN--  223 (483)
Q Consensus       169 -~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~--  223 (483)
                       .+.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++..             +..++..  
T Consensus       103 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~  182 (429)
T PRK06173        103 SLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI  182 (429)
T ss_pred             CcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc
Confidence             456777799999999997653         246678999999999877666554311             1112211  


Q ss_pred             ---------CHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccc
Q 011567          224 ---------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVL  289 (483)
Q Consensus       224 ---------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~l  289 (483)
                               +.+.|++.++...       .++++|++||+ ++.+|.+.|    |++|+++|++||++||+||+++ | +
T Consensus       183 ~~~~~~~~~~l~~l~~~i~~~~-------~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-G-~  253 (429)
T PRK06173        183 KFGEEWNDEAIEPLQDLLEQKG-------DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIAT-G-F  253 (429)
T ss_pred             ccchhHHHHHHHHHHHHHHhCC-------CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhc-C-C
Confidence                     2445666665322       25899999997 888887755    9999999999999999999995 4 6


Q ss_pred             cCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhc-CCceee--cCCCcHHHHHHHHHHH
Q 011567          290 GRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLS-SSGYVF--SASLPPYLASAAITAI  360 (483)
Q Consensus       290 g~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~-~~~~~f--s~~~~p~~~aaa~~al  360 (483)
                      |++|+++ .+++|+.|   ||+  +++|+++  |||     +++++++++.+... ...+.+  +.+.||+.|++++++|
T Consensus       254 GrtG~~~a~~~~gv~P---Div--~~gK~l~--gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l  326 (429)
T PRK06173        254 GRTGKLFALEHAGVVP---DIM--CIGKALT--GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI  326 (429)
T ss_pred             CcCCcchHHHhcCCCC---CEE--Eeehhhh--CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHH
Confidence            9999986 58899987   888  5999997  665     46788888887532 112222  2246899999999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       361 ~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      +++++++ ++++++++.++|++.|+++.+++...  ...++++.+.+.++.        ....+++.+++ +||++.+..
T Consensus       327 ~~i~~~~-~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e-~Gi~v~~~g  396 (429)
T PRK06173        327 RLLLESP-WQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVE-HGIWVRPFG  396 (429)
T ss_pred             HHHHhCC-HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHH-CCeEEEecC
Confidence            9998764 79999999999999998653444332  246889999885421        13456776555 599997642


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                                ..||+.|++.+|++|+++++++|++++.++-
T Consensus       397 ----------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~  427 (429)
T PRK06173        397 ----------KLVYIMPPFIISPDELSQLTSGLLRVLKQEY  427 (429)
T ss_pred             ----------CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence                      2399999999999999999999999998764

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=7.5e-39  Score=328.44  Aligned_cols=360  Identities=14%  Similarity=0.163  Sum_probs=261.7

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++++....+   .  ....+...+|+++|+++++
T Consensus        30 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~---~--~~~~~~~~~lae~l~~~~~  103 (451)
T PRK07678         30 TMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGY-GRKELAEAAYEQLKTLSYFP---L--TQSHEPAIKLAEKLNEWLG  103 (451)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCC-CCHHHHHHHHHHHHhcCccc---c--ccCCHHHHHHHHHHHHhCC
Confidence            6789999999999 899999999987   67999 89999999999999854321   1  1234677899999999987


Q ss_pred             CCC-EEEecccHHHHHhhhhh---hc------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC---
Q 011567          169 TPD-SILYSYGLSTMFSAIPC---FC------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN---  223 (483)
Q Consensus       169 ~e~-~i~~~sG~~a~~~ai~~---~~------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~---  223 (483)
                      ... +++.+||++|++.|++.   ++      +|..+|.+...||+.+..++.+++..            +..++.+   
T Consensus       104 ~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (451)
T PRK07678        104 GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCY  183 (451)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccc
Confidence            654 45559999999999765   33      35678899999999887777655421            1112111   


Q ss_pred             -----------CH---HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccc
Q 011567          224 -----------DM---DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNS  285 (483)
Q Consensus       224 -----------d~---~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s  285 (483)
                                 |.   +.++++++..      .+..+++|++||+++++|.+.|    |++++++|++||++||+||+++
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t  257 (451)
T PRK07678        184 RMPGIESEDIYDLECVKEIDRVMTWE------LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVIC  257 (451)
T ss_pred             cccccCChHHHHHHHHHHHHHHHHhc------CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh
Confidence                       11   1244445421      1235999999999999888876    9999999999999999999996


Q ss_pred             cccccCCCCc-cccccCCCCCceeEEEccccccccCCCc-----eeeccHHHHHHHHhcCC----ceeecCCCcHHHHHH
Q 011567          286 FGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEGG-----FCTGSARVVDHQRLSSS----GYVFSASLPPYLASA  355 (483)
Q Consensus       286 ~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~GG-----~i~~~~~~~~~~~~~~~----~~~fs~~~~p~~~aa  355 (483)
                      +  +|++|++ ..+++|+.|   ||+  +++|++|  ||     .+++++++++.+.....    .+..+.+.||+.|++
T Consensus       258 G--fGRtG~~~~~~~~gv~P---Div--t~gK~lg--gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aa  328 (451)
T PRK07678        258 G--FGRTGKAFGFMNYGVKP---DII--TMAKGIT--SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACAL  328 (451)
T ss_pred             c--CCcCchhHHHHhcCCCC---CEE--Eeecccc--cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHH
Confidence            5  4566654 357899988   898  7999998  44     35788999988754211    122233569999999


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC-CCce--eecCCCCCEEEEEecCCCCCc-hhhHHHHHHHHHHHHHhCC
Q 011567          356 AITAIDVLEENPDLITKLKKNTAILRTGLSDI-HGLS--IASNPESPIVFLILEKSTGSM-KNDLQLLEDIADWALKEDG  431 (483)
Q Consensus       356 a~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~-~~~~--i~~~~~~~i~~l~l~~~~~~~-~~~~~~~~~i~~~~l~~~G  431 (483)
                      +.++|++++++ ++.+++++++++|++.|+++ ..++  ......+.++.+.+..+.... ..+.....+++..+++ +|
T Consensus       329 a~a~l~~l~~~-~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~G  406 (451)
T PRK07678        329 ALKNLEIMENE-NLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE-KG  406 (451)
T ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CC
Confidence            99999999875 48999999999999988643 2222  222356788888885322111 1123456677877665 59


Q ss_pred             EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      |++.+.. +.+...  ...||++|+..+|++|||+++++++++++++
T Consensus       407 v~~~~~g-~~v~~~--~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        407 LIIGKNG-DTVAGY--NNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             cEEeecC-ccccCC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            9986532 211100  1349999999999999999999999998754

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=9.7e-39  Score=325.29  Aligned_cols=344  Identities=23%  Similarity=0.296  Sum_probs=269.3

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |+++.+++|.+++ .||++||||+|+   ..+|| .||+|.+|+.+++++++.++   +.+  +++.+.+++++|++++|
T Consensus        20 ~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~   93 (401)
T TIGR01885        20 PVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGH-CHPKIVKALTEQAQKLTLSS---RAF--YNDVFGEFAEYVTKLFG   93 (401)
T ss_pred             CceEEeeecCEEEeCCCCEEEEcccCHhhccCCC-CCHHHHHHHHHHHHhccccc---ccc--CCHHHHHHHHHHHhhcC
Confidence            5677899999999 799999999996   34677 79999999999999876433   222  46889999999999999


Q ss_pred             CCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCH
Q 011567          169 TPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDM  225 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~  225 (483)
                      .+.+++++||++|++.|++...           ++..++..+..+|+++..++.+++            ..+..++|+|+
T Consensus        94 ~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (401)
T TIGR01885        94 YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNL  173 (401)
T ss_pred             CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCH
Confidence            8889999999999999988741           233455667778988888887764            23567899999


Q ss_pred             HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-ccc
Q 011567          226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHC  300 (483)
Q Consensus       226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~  300 (483)
                      ++||+.+++...       ..++|++||+++++|.+.|    |++|+++|++||+++|+||+|++  +|++|+++. +++
T Consensus       174 ~~le~~l~~~~~-------~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g--~g~~G~~~~~~~~  244 (401)
T TIGR01885       174 EALEEALEDHGP-------NVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG--LGRTGKLLCVDHE  244 (401)
T ss_pred             HHHHHHHHhcCC-------CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchhhHHhhc
Confidence            999998865432       3789999999999999988    99999999999999999999963  788888764 567


Q ss_pred             CCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      ++.|   |++  +++|+++..+   |++++++++++.++.....++|+  .+|..++++.++|+.++++ .+.+++++++
T Consensus       245 ~~~~---di~--~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~--~~p~~~~aa~a~L~~i~~~-~l~~~~~~~~  316 (401)
T TIGR01885       245 NVKP---DIV--LLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYG--GNPLACAVAVAALEVLEEE-KLAENAEKLG  316 (401)
T ss_pred             CCCC---CEE--EeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCC--CCHHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence            7766   777  5889997321   45788999998886544444554  4799999999999999764 4788999999


Q ss_pred             HHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          378 AILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       378 ~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      +++++.|+++ +.++.  ..+.+++..+.+..+..     .....+++..+. ++||++.+..         +..+||++
T Consensus       317 ~~~~~~L~~l-~~~~~~~~~g~g~~~~i~~~~~~~-----~~~~~~l~~~l~-~~Gv~v~~~~---------~~~lRi~p  380 (401)
T TIGR01885       317 EIFRDQLKKL-PKPIITEVRGRGLLNAIVIDESKT-----GRTAWDLCLKLK-EKGLLAKPTH---------GNIIRLAP  380 (401)
T ss_pred             HHHHHHHHhc-cCCceeEEeecCeeEEEEeccCcc-----hhHHHHHHHHHH-hCCEEEEecC---------CCEEEEeC
Confidence            9999999887 33332  13467788777743210     123457787765 4699997642         23499999


Q ss_pred             cCCCCHHHHHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l~~~~  475 (483)
                      +..+|++||++++++|++++
T Consensus       381 ~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       381 PLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             CccCCHHHHHHHHHHHHHHh
Confidence            99999999999999998875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.1e-38  Score=327.69  Aligned_cols=352  Identities=13%  Similarity=0.136  Sum_probs=264.8

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      +.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++....+.    +..+++...+|.++|++.++
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~~~~~----~~~~~~~~~~lae~L~~~~p  104 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGH-ANPRINQRIKDQVDQLEHVIL----AGFSHEPVIELSERLVKITP  104 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCC-CCHHHHHHHHHHHHhcCCccc----cccCCHHHHHHHHHHHHhCC
Confidence            3578999999999 899999999987   57899 899999999999998543221    11245788999999999885


Q ss_pred             --CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC--
Q 011567          169 --TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN--  223 (483)
Q Consensus       169 --~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~--  223 (483)
                        .+.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++..            +..++..  
T Consensus       105 ~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~  184 (466)
T PRK07030        105 PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDC  184 (466)
T ss_pred             CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCc
Confidence              356667799999999998754         346679999999999887777665532            1112211  


Q ss_pred             ---------------CHHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          224 ---------------DMDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       224 ---------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                                     +.+++++.+.+..       ..+++|++|| +++.+|.+.|    |++|+++|++||++||+||+
T Consensus       185 ~~~~~~~~~~~~~~~~l~~le~~~~~~~-------~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV  257 (466)
T PRK07030        185 YLRPEGMSWEEHSRRMFAHMEQTLAEHH-------DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEI  257 (466)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHhCC-------CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence                           2345566665322       2589999999 6888888766    89999999999999999999


Q ss_pred             cccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCc-----eeeccHHHHHHHHhc-------CCceeecCCCcH
Q 011567          284 NSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGG-----FCTGSARVVDHQRLS-------SSGYVFSASLPP  350 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG-----~i~~~~~~~~~~~~~-------~~~~~fs~~~~p  350 (483)
                      +++  +|++|+++ .+++|+.|   ||+  +++|+++  ||     .+++++++++.+...       .++.+|  +.||
T Consensus       258 ~TG--fGRtG~~~a~~~~gv~P---Div--~~gKgl~--gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~--~gnp  326 (466)
T PRK07030        258 AVG--FGRTGTMFACEQAGIRP---DFL--CLSKALT--GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY--TGNP  326 (466)
T ss_pred             hhC--cCccccchHHHhcCCCC---CEE--eeehhcc--CCcccceEEEecHHHHHHHhcccccccccccCCCC--CCCH
Confidence            875  56677655 48999998   898  7999998  55     357889998877421       123334  4599


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADW  425 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~  425 (483)
                      +.|+++.++|+++++++ +.++.++++++|++.|+++...+..  ....+.++.+.+..+....   ..+.....++...
T Consensus       327 la~aaa~a~L~~i~~~~-l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~  405 (466)
T PRK07030        327 LACAAALATLDIFEQDN-VIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQH  405 (466)
T ss_pred             HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHH
Confidence            99999999999998754 8999999999999999876333322  1345778888774322111   1122234567777


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +++ +|+++.+..          ..+|+.|++.+|++||++++++++++++++.
T Consensus       406 ~~~-~Gvl~~~~g----------~~i~~~Ppl~it~~eid~~~~~l~~al~~~~  448 (466)
T PRK07030        406 ALE-RGALLRPLG----------SVVYFLPPYVITPEQIDFLAEVASEGIDIAT  448 (466)
T ss_pred             HHH-CCeEEEecC----------CEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            665 599997532          2389999999999999999999999998873

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.1e-39  Score=329.16  Aligned_cols=356  Identities=19%  Similarity=0.249  Sum_probs=265.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      .|+++++++|.++| .||++||||+++  ..+|| +||+|.+|+.+|++++..++  ++   ..++...+|+++|+++++
T Consensus        54 ~~~~i~~a~G~~l~D~dG~~ylD~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~--~~---~~~~~~~~lae~L~~~~p  127 (459)
T PRK06082         54 CLDVLASAEGIYIEDVDGKKYMDFHGNNVHQLGY-GHPHVIEKVKEQMAKLPFSP--RR---FTNETAIECAEKLTEIAG  127 (459)
T ss_pred             CCceEEeeeeeEEEECCCCEEEEcccHhhcccCC-CCHHHHHHHHHHHHhCCCcc--Cc---cCCHHHHHHHHHHHHhCC
Confidence            36789999999999 799999999865  45899 89999999999999865432  11   235888999999999986


Q ss_pred             C--CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCCeE------------EEec--------CC
Q 011567          169 T--PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRSTV------------VYFK--------HN  223 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~~v------------~~~~--------~~  223 (483)
                      .  +.+++.+||++|++.|++.   +++|..+|.+...||+.+..++.+++...            ..++        .+
T Consensus       128 ~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (459)
T PRK06082        128 GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFP  207 (459)
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccC
Confidence            4  4566669999999999754   56788899999999999887777665321            1111        22


Q ss_pred             C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC
Q 011567          224 D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS  292 (483)
Q Consensus       224 d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~  292 (483)
                      +        ++++++.+++.        ..+++|++||++++++.+.|   |++|+++|++||++||+||++++  +|++
T Consensus       208 ~~~~~~~~~~~~l~~~i~~~--------~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG--~GRt  277 (459)
T PRK06082        208 DADGSDVHYADYLEYVIEKE--------GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNG--MGRT  277 (459)
T ss_pred             ChhHHHHHHHHHHHHHHhcC--------CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcc
Confidence            2        23455555431        14899999999988555566   99999999999999999999985  6888


Q ss_pred             CCccc-cccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcH
Q 011567          293 GRGLT-EHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPD  368 (483)
Q Consensus       293 G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~  368 (483)
                      |+++. +++|+.|   ||+  +++|++|..   -|.+++++++.+... ....+ ++.+.||+.|+++.++|++++++ +
T Consensus       278 G~~fa~e~~gv~P---Div--~~gKgl~gG~~P~~av~~~~~i~~~~~-~~~~~-~T~~gnpl~~aaa~a~L~~l~~~-~  349 (459)
T PRK06082        278 GEWFTHQAYGIEP---DIL--CIGKGLGGGLVPIAAMITKDKYNTAAQ-ISLGH-YTHEKSPLGCAAALATIEVIEQE-G  349 (459)
T ss_pred             chhhHhHhhCCCC---CEE--EecccccCCCCcceEEEEcHHHHhhcc-CCCCC-CCCCcCHHHHHHHHHHHHHHHhc-C
Confidence            88765 8999988   888  699999821   133566777765432 11122 45567999999999999999775 4


Q ss_pred             HHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC
Q 011567          369 LITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC  445 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~  445 (483)
                      +.+++++++++|++.|+++. .+++.  ....+.++.+.+..+......+......+...+++ +||++.+...      
T Consensus       350 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~------  422 (459)
T PRK06082        350 LLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVSQG------  422 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEecCC------
Confidence            89999999999999998752 23222  23467788888854322111222345567777765 5999875321      


Q ss_pred             CCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          446 RLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       446 ~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                         ..||++|+..+|++||+++++++++++.++.++
T Consensus       423 ---~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~  455 (459)
T PRK06082        423 ---NVIQLSPPLIITREELTQALAILEEAIAKICQD  455 (459)
T ss_pred             ---CEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence               339999999999999999999999999887554

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.1e-39  Score=327.49  Aligned_cols=352  Identities=18%  Similarity=0.212  Sum_probs=261.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+++....+.    +...++...++.++|++++
T Consensus        28 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~----~~~~~~~~~~la~~l~~~~  102 (442)
T PRK13360         28 APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGH-GRPEIVEAVRAQAGELDYAPA----FQMGHPKAFELANRIAEIA  102 (442)
T ss_pred             CCceEEeeeeeEEEeCCCCEEEECchhHHHhccCC-CCHHHHHHHHHHHHhCCCccc----CCcCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999987   67999 899999999999998643221    1224577889999999998


Q ss_pred             C--CCCEEEecccHHHHHhhhhh---hc------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC-
Q 011567          168 G--TPDSILYSYGLSTMFSAIPC---FC------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN-  223 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~---~~------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~-  223 (483)
                      +  .+.+.+.+||++|++.|++.   ++      +|..+|.+...||+.+..++.+++..            +..+++. 
T Consensus       103 p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~  182 (442)
T PRK13360        103 PGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTL  182 (442)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCc
Confidence            5  45677779999999999764   32      35678899999999877666555421            1122222 


Q ss_pred             C-----------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          224 D-----------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       224 d-----------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                      +                 .++||++++...      +..+++|++||+++++|.+.|    |++|+++|++||++||+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~------~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DE  256 (442)
T PRK13360        183 DLARNAFSKGQPEHGAELADELERLVTLHD------ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDE  256 (442)
T ss_pred             hhhccccCCChHHHHHHHHHHHHHHHHhcC------CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            1                 346666665322      125899999999999999988    9999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHH
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPY  351 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~  351 (483)
                      ++++  +|++|+++ .+++|+.|   ||+  +++|+++.   +-|.+++++++++.+...       .++++|+  .+|+
T Consensus       257 v~tG--~GrtG~~~a~~~~gv~P---Div--t~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~--g~pl  327 (442)
T PRK13360        257 VITG--FGRLGAPFAAQYFGVTP---DLL--TCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYS--GHPL  327 (442)
T ss_pred             hhhC--CCCCccchhhhhcCCCC---cee--eeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCC--CCHH
Confidence            9963  46666655 58899988   887  89999972   123466788998876532       1334444  5999


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE  429 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~  429 (483)
                      .|+++.++|+++++.+ +.++++++.+++++.|+++..++...  ...+.+..+.+......   +...+.++...+++ 
T Consensus       328 ~~aaa~a~L~~l~~~~-l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~---~~~~~~~~~~~l~~-  402 (442)
T PRK13360        328 ACAAALATLDLYEREG-LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGK---PGKRAYEVFLKCFE-  402 (442)
T ss_pred             HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCC---cchhHHHHHHHHHH-
Confidence            9999999999998764 89999999999999998753332221  22344555665432111   11234567776665 


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +||++....          ..|||+|++.+|++|||+++++++++++++
T Consensus       403 ~Gvl~~~~~----------~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        403 KGLMIRYTG----------DILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CCcEEEecC----------CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence            599986532          239999999999999999999999999775

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=326.91  Aligned_cols=363  Identities=19%  Similarity=0.230  Sum_probs=264.6

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++++....+.   ....+++...+++++|++.+
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~~   99 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGH-NREEVKEAIVRQLDELEYYST---FDGTTHPRAIELSYELIDMF   99 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhccceec---ccccCCHHHHHHHHHHHHhc
Confidence            47789999999999 899999999986   67999 899999999999998543211   01124678899999999998


Q ss_pred             C---CCCEEEecccHHHHHhhhhh---hc------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe---
Q 011567          168 G---TPDSILYSYGLSTMFSAIPC---FC------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYF---  220 (483)
Q Consensus       168 g---~e~~i~~~sG~~a~~~ai~~---~~------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~---  220 (483)
                      +   .+.+++.+||++|++.|++.   ++      +|..+|.+..+||+.+..++.+++..            +..+   
T Consensus       100 ~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~  179 (449)
T PRK07481        100 APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETP  179 (449)
T ss_pred             CCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCC
Confidence            4   34566779999999999864   32      46679999999999877666554321            1111   


Q ss_pred             -----cCC--CHHHHHHHHHH-hhhhhh-hccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccc
Q 011567          221 -----KHN--DMDSLRNTLER-VTADNK-RAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       221 -----~~~--d~~~Le~~l~~-~~~~~~-~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                           +.|  |.+.+++.+.+ ...... ..+..+++|++||+++++|.+.|    |++|+++|++||++||+||++++ 
T Consensus       180 ~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tG-  258 (449)
T PRK07481        180 WLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTG-  258 (449)
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhC-
Confidence                 123  55554433211 110000 12236999999999999898776    99999999999999999999985 


Q ss_pred             cccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHHHHHHH
Q 011567          288 VLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPYLASAA  356 (483)
Q Consensus       288 ~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~~~aaa  356 (483)
                       +|++|.++ .+++|+.|   ||+  +++|+++.   +-|.+++++++++.+...       .++.+|  +.||+.|+++
T Consensus       259 -fGRtG~~~a~~~~gv~P---Div--~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~--~gnpl~~aaa  330 (449)
T PRK07481        259 -FGRTGSWFGSRGWGVKP---DIM--CLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTY--SGHPVACAAA  330 (449)
T ss_pred             -cCcCchhhHhhhcCCCC---CEE--EEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCC--CCCHHHHHHH
Confidence             57777655 57899988   898  79999972   123467888998887532       123334  4599999999


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHHHhC
Q 011567          357 ITAIDVLEENPDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWALKED  430 (483)
Q Consensus       357 ~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l~~~  430 (483)
                      .++|++++++ ++.++++++.++|++.|+++. .+++.  ....+.++.+.+..+....   +........+...+++ +
T Consensus       331 ~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  408 (449)
T PRK07481        331 LATLDIVVRE-DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARE-N  408 (449)
T ss_pred             HHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHh-C
Confidence            9999999874 589999999999999997753 23322  2345778888875322111   1112345567777665 5


Q ss_pred             CEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          431 GVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       431 Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ||++.+..          ..+|++|+..+|++|||+++++++++++++.
T Consensus       409 Gvl~~~~g----------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        409 GVLVRPSG----------TKIILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             CeEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            99987542          2289999999999999999999999998753

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-38  Score=324.91  Aligned_cols=360  Identities=16%  Similarity=0.185  Sum_probs=264.4

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |+++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++....+.    +....+...+++++|++.++
T Consensus        35 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~q~~~~~~~~~----~~~~~~~~~~la~~l~~~~p  109 (460)
T PRK06541         35 VPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGH-GRAELAEAAAKQAGTLAFFPL----WSYAHPPAIELAERLAALAP  109 (460)
T ss_pred             CceEEeCcccEEEeCCCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhCcCccc----cccCCHHHHHHHHHHHHhCC
Confidence            6789999999999 899999999997   67999 899999999999998643221    12245788999999999875


Q ss_pred             C--CCEEEecccHHHHHhhhhhh------c---cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEec----
Q 011567          169 T--PDSILYSYGLSTMFSAIPCF------C---KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFK----  221 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~~~------~---~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~----  221 (483)
                      .  +.+++++||++|++.|++..      +   +|.++|.+...||+.+..++.+++..            +..++    
T Consensus       110 ~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~  189 (460)
T PRK06541        110 GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNF  189 (460)
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcc
Confidence            3  56677799999999997642      2   36678999999999988777665422            11122    


Q ss_pred             -----C-CCH--------HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          222 -----H-NDM--------DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       222 -----~-~d~--------~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                           + +|.        +.+++.++...      +.++++|++||+++++|.+.|    |++|+++|++||++||+||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV  263 (460)
T PRK06541        190 YRAPELGDDPEAFGRWAADRIEEAIEFEG------PDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEV  263 (460)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHhcC------CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence                 1 222        44555554321      235899999999999999988    99999999999999999999


Q ss_pred             cccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCc--eeecCCCcHHHHHHHH
Q 011567          284 NSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSG--YVFSASLPPYLASAAI  357 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~--~~fs~~~~p~~~aaa~  357 (483)
                      +++  +|++|+++ .+++|+.|   ||+  +++|+++.   +-|.+++++++++.+......  +.++.+.||+.+++++
T Consensus       264 ~tG--fGR~G~~~a~~~~gv~P---Div--t~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaal  336 (460)
T PRK06541        264 ICA--FGRLGEMFGCERFGYVP---DII--TCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVAL  336 (460)
T ss_pred             hhC--CCcCchhhhhhhcCCCC---CEE--EecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHH
Confidence            953  34555554 57899987   887  69999982   234567788888877543212  2234457999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hh---hHHHHHHHHHHHHHh
Q 011567          358 TAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KN---DLQLLEDIADWALKE  429 (483)
Q Consensus       358 ~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~---~~~~~~~i~~~~l~~  429 (483)
                      ++++.+++. ++.+++++++++|++.|+++..+++.  ....+.++.+.+..+....   ..   +......+...+++ 
T Consensus       337 a~l~~l~~~-~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  414 (460)
T PRK06541        337 ANLDIFERE-GLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFE-  414 (460)
T ss_pred             HHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHh-
Confidence            999998765 48899999999999999886433332  2356788888875321110   00   11112356666665 


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +||++.+....       ...||++|++.+|++|||++++++++++.++.
T Consensus       415 ~Gi~~~~~~~g-------~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        415 AGLYCRADDRG-------DPVVQLAPPLISGQEEFDEIEQILRSVLTEAW  457 (460)
T ss_pred             CCeEEEecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            59999763110       13399999999999999999999999998764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=1.1e-38  Score=324.91  Aligned_cols=346  Identities=19%  Similarity=0.238  Sum_probs=270.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++.+++|.+++ .||++||||+++   ++||| +||++.+++.++++++...  +   ...+.+.+.+++++|+++.
T Consensus        22 ~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~--~---~~~~~~~~~~l~~~l~~~~   95 (403)
T PRK05093         22 AEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHI--S---NVFTNEPALRLAKKLIDAT   95 (403)
T ss_pred             CCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcc--c---CccCCHHHHHHHHHHHhhC
Confidence            46788999999999 899999999997   89999 9999999999999885321  1   1234577889999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhc------------CCeEEEecCCCHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLS------------RSTVVYFKHNDMD  226 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s------------~~~v~~~~~~d~~  226 (483)
                      +.+.+++++||++|++.|++..         .++.++|.++..+|+++..++.++            ..++..+++||++
T Consensus        96 ~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  175 (403)
T PRK05093         96 FAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLA  175 (403)
T ss_pred             CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHH
Confidence            8888899999999999998754         357789999999999877554432            2346778999999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      ++++.+.+          .+++|++||+++++|.+.|    +++|+++|++||+++|+||+|++  +|++|++.. ++++
T Consensus       176 ~l~~~l~~----------~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g--~g~~g~~~~~~~~~  243 (403)
T PRK05093        176 AVKAVIDD----------HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTG--MGRTGDLFAYMHYG  243 (403)
T ss_pred             HHHHHhcC----------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCCCccchhhhhcC
Confidence            99887742          3789999999999887755    99999999999999999999984  577777554 5778


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.|   |++  |+||++++  +.|++++++++++.+.......+|  +.+|..++++.++|+.+.+ ++..++++++.++
T Consensus       244 ~~p---di~--s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~--~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~  315 (403)
T PRK05093        244 VTP---DIL--TSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTY--GGNPLACAVAEAVFDIINT-PEVLEGVKARRQR  315 (403)
T ss_pred             CCC---CEE--EecccccCCcceEEEEEcHHHHhhcCCCCCCCCC--CCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHH
Confidence            776   665  89999983  237788899999887654444444  4588899999999998865 4578999999999


Q ss_pred             HHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +.+.|+++. .+.+  ..+..+.++++.+.+..      .....+++..+++ +||++.+..         ++.+|++++
T Consensus       316 l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~------~~~~~~~~~~l~~-~Gv~v~~~g---------~~~lRl~~~  379 (403)
T PRK05093        316 FVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY------KGRARDFLNAAAE-EGVMVLVAG---------PDVLRFAPS  379 (403)
T ss_pred             HHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc------hhHHHHHHHHHHH-CCeEEecCC---------CCEEEEeCC
Confidence            999998751 1211  22234667777774311      1234567877766 489987532         134999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ..+|+++|++++++|++++.++.
T Consensus       380 ~~~~~~~i~~~~~~l~~~l~~~~  402 (403)
T PRK05093        380 LVIEEADIDEGLARFEKAVAKVV  402 (403)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999987653

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=2.8e-38  Score=326.19  Aligned_cols=350  Identities=21%  Similarity=0.227  Sum_probs=269.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| +||++||||.++   ..+|| +||+|.+|++++++++..++.   .+  ..+...+|+++|++++
T Consensus        57 ~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh-~~p~v~~ai~~ql~~~~~~~~---~~--~~~~~~~la~~L~~~~  130 (474)
T PLN02624         57 IPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGH-CHPKIIKALTEQAEKLTLSSR---AF--YNDKFPEFAEYLTSMF  130 (474)
T ss_pred             CCceEEeeeeCEEEECCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhcCCccc---cc--CCHHHHHHHHHHHhhc
Confidence            46788999999999 899999999987   46899 899999999999999765432   12  3578899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhcc-----------CCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFCK-----------KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND  224 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~~-----------~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d  224 (483)
                      |.+.+++++||++|++.|++....           +..+|.+...+|+.+...+.+++.            .+..++++|
T Consensus       131 ~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d  210 (474)
T PLN02624        131 GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGD  210 (474)
T ss_pred             CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCC
Confidence            988899999999999999864321           224778888999887766665432            245678899


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~  299 (483)
                      .+.+++.++....       .+++|++||+++++|.+.|    |++|+++|++||+++|+||+|++  +|++|.++. ++
T Consensus       211 ~~~l~~~l~~~~~-------~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG--~GrtG~~~a~~~  281 (474)
T PLN02624        211 LDALEKIFEEDGD-------RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTG--LARTGKMLACDW  281 (474)
T ss_pred             HHHHHHHHHhCCC-------CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--cCcCcchhhHHh
Confidence            9999998865322       4899999999999999888    99999999999999999999984  688887665 56


Q ss_pred             cCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      +++.|   |++  +++|++|..   .|++++++++++.+....++.+|  +.+|+.++++.++|+.+++. ++.+++.++
T Consensus       282 ~~i~p---Div--~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~--~g~pl~~aaa~aaLe~l~~~-~l~~~~~~~  353 (474)
T PLN02624        282 EEVRP---DVV--ILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTF--GGNPLASAVAMAALQVVQDE-KLAERSAKL  353 (474)
T ss_pred             cCCCC---CEE--EecccccCCCCcceeeeecHHHHhHhccCCcCCCC--CCCHHHHHHHHHHHHHHHhc-hHHHHHHHH
Confidence            78776   887  589999832   25677888888876544444444  45899999999999988764 478888889


Q ss_pred             HHHHHHhhccCC-Cce--ee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceE
Q 011567          377 TAILRTGLSDIH-GLS--IA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR  452 (483)
Q Consensus       377 ~~~l~~~L~~~~-~~~--i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lR  452 (483)
                      .+++++.|+++. .++  +. ..+.+.++.+.+..+..    ......++++.++ ++||++.+..         +..||
T Consensus       354 ~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~----~~~~a~~~~~~L~-e~GV~v~p~~---------~~~lR  419 (474)
T PLN02624        354 GQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKL----GPVSAYDVCLKLK-ERGLLAKPTH---------DTIIR  419 (474)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCc----ChHHHHHHHHHHH-hCCeEEecCC---------CCEEE
Confidence            899998887641 121  11 12456677777743210    1123456777654 5699997642         13499


Q ss_pred             EEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          453 LFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       453 i~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      |+|++.+|++||++++++|++++.+-
T Consensus       420 ~~p~l~~t~e~id~~l~~L~~~l~~~  445 (474)
T PLN02624        420 LAPPLSISEDELQECSKALSDVLEHD  445 (474)
T ss_pred             EECCccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-38  Score=325.19  Aligned_cols=357  Identities=16%  Similarity=0.195  Sum_probs=263.1

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| +|||+||||.++   ..+|| +||+|.+|+.+|+++....+..   ...+++...+|.++|++.+
T Consensus        33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~---~~~~~~~~~~lae~L~~~~  108 (466)
T PRK07036         33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGY-GREEMADAIADQARRLPYYTPF---GDMTNAPAAELAAKLAELA  108 (466)
T ss_pred             CCceEEeCceeEEEECCCCEEEECcccHHhhcCCC-CCHHHHHHHHHHHHhCcccccc---cccCCHHHHHHHHHHHHhC
Confidence            47789999999999 899999999987   67999 8999999999999985432211   0124577899999999988


Q ss_pred             CC--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCC
Q 011567          168 GT--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHND  224 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d  224 (483)
                      +.  +.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++..            +..++..+
T Consensus       109 p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~  188 (466)
T PRK07036        109 PGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPN  188 (466)
T ss_pred             CCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCc
Confidence            63  45666699999999998753         236678889999999887666655421            11111111


Q ss_pred             -----------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          225 -----------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       225 -----------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                                       .+.+++.+...      .+..+++|++||+++++|.+.|    |++|+++|++||+++|+||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV  262 (466)
T PRK07036        189 PYRRPAGMSEAAFCDFLVDEFEDKILSL------GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEV  262 (466)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHHc------CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeec
Confidence                             12334434321      2236999999999999998887    99999999999999999999


Q ss_pred             cccccccCCCCcc-cc-ccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHH
Q 011567          284 NSFGVLGRSGRGL-TE-HCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPY  351 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~-~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~  351 (483)
                      +++  +|++|..+ .+ ++|+.|   ||+  +++|++|.   +-|.+++++++++.+...       .++.+|  +.+|+
T Consensus       263 ~tG--fGRtG~~~~~~~~~gv~P---Div--t~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~--~gnpl  333 (466)
T PRK07036        263 VTG--FGRLGHFFASEAVFGIQP---DII--TFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY--SGHPV  333 (466)
T ss_pred             hhC--CCcCchhhhhhhhcCCCC---CEE--EEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCC--CCCHH
Confidence            975  56666533 45 789988   888  79999972   124457889999887532       122334  45999


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHH
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWA  426 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~  426 (483)
                      .|++++++|+++++. ++.+++++++++|++.|+++..+++.  ....+.++.+.+..+....   ..+......+...|
T Consensus       334 ~~aaa~a~Le~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~  412 (466)
T PRK07036        334 ACAAALKNIEIMERE-GLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHC  412 (466)
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHH
Confidence            999999999999765 59999999999999999775433322  2345778888875432211   11233456677776


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ++ +||++.+..          ..+|++|+..+|++|||++++++++++.++.
T Consensus       413 ~~-~Gvl~~~~~----------~~~~l~Ppl~it~~~id~~~~~l~~al~~~~  454 (466)
T PRK07036        413 QE-RGLLVRPLE----------HLCVLSPPLIITRAQIDEIVAILRAAIEETA  454 (466)
T ss_pred             HH-CCcEEeecC----------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            65 599987532          1289999999999999999999999988763

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.6e-38  Score=325.05  Aligned_cols=351  Identities=17%  Similarity=0.207  Sum_probs=266.3

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      +.|+++++++|.|+| .||++||||.++   ..+|| +||++.+|+++++++......    ..-+++...+|+++|++.
T Consensus        23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~----~~~~~~~~~~la~~l~~~   97 (423)
T PRK05964         23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGH-NHPYIDQAIREQLDRLDHVIF----AGFTHEPAERLAQRLVAL   97 (423)
T ss_pred             CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCC-CCHHHHHHHHHHHhhCCCccc----cccCCHHHHHHHHHHHHh
Confidence            357889999999999 899999999987   67999 899999999999998543211    012457788999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcC--------------CeEEEec
Q 011567          167 LG--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSR--------------STVVYFK  221 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~--------------~~v~~~~  221 (483)
                      ++  .+.+++.+||++|++.|++..         ++|..+|.+...||+.+...+.+++              ...+.++
T Consensus        98 ~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~  177 (423)
T PRK05964         98 TPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFP  177 (423)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCC
Confidence            85  456777799999999998753         4677899999999998766655433              2234556


Q ss_pred             CCC-----HHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccC
Q 011567          222 HND-----MDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGR  291 (483)
Q Consensus       222 ~~d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~  291 (483)
                      ++|     .+++++.+++...       .+++|++|| +++.+|...|    |++|+++|++||++||+||+|++  +|+
T Consensus       178 ~~d~~~~~~~~l~~~l~~~~~-------~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg--~gr  248 (423)
T PRK05964        178 PDGYEQATLDALEALLEKHAG-------EIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATG--FGR  248 (423)
T ss_pred             cchhHHHHHHHHHHHHHhCCC-------cEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCc
Confidence            666     6777777764322       488999999 5777787765    99999999999999999999974  577


Q ss_pred             CCCccc-cccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc--CCceeec--CCCcHHHHHHHHHHHHHH
Q 011567          292 SGRGLT-EHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS--SSGYVFS--ASLPPYLASAAITAIDVL  363 (483)
Q Consensus       292 ~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~--~~~~~fs--~~~~p~~~aaa~~al~~l  363 (483)
                      +|.++. +++++.|   |++  +++|+++.   +.|++++++++++.+...  ...+.++  .+.+|+.++++.++++.+
T Consensus       249 ~G~~~a~~~~~v~p---Di~--~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l  323 (423)
T PRK05964        249 TGTLFACEQAGVSP---DIM--CLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLF  323 (423)
T ss_pred             CcchhHHHhcCCCC---Cee--eeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHH
Confidence            787654 7889887   887  78999962   235578899999887532  1122222  246999999999999999


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM  441 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~  441 (483)
                      ++++ +.++++++.+++++.|+++..++...  ...+.++.+.+.+...     ......+...+++ +||++.+..   
T Consensus       324 ~~~~-~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~-~Gv~v~~~~---  393 (423)
T PRK05964        324 EDEP-VLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALE-RGVLLRPLG---  393 (423)
T ss_pred             HhcC-HHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHH-CCeEEEecC---
Confidence            7654 88999999999999998764443221  3456777888753210     1234467776554 699997642   


Q ss_pred             cccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          442 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       442 ~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                             +.||++|+..+|++|||++++++++++++
T Consensus       394 -------~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        394 -------NTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             -------CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence                   23999999999999999999999999876

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-38  Score=326.78  Aligned_cols=360  Identities=18%  Similarity=0.268  Sum_probs=267.7

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+++++... .+.   .....+...+++++|++.+
T Consensus        38 ~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~-~~~---~~~~~~~~~~la~~l~~~~  112 (443)
T PRK06058         38 LPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGN-SAPRVVEAVREQVARFTH-TCF---MVTPYEGYVAVAEQLNRLT  112 (443)
T ss_pred             CCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCC-CCHHHHHHHHHHHHhccC-ccc---cccCCHHHHHHHHHHHHhC
Confidence            47889999999999 899999999997   67999 899999999999998532 111   1234578889999999998


Q ss_pred             CC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEE----ecCCC
Q 011567          168 GT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVY----FKHND  224 (483)
Q Consensus       168 g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~----~~~~d  224 (483)
                      +.   +.+++++||++|++.|++   .+++|..+|.++..||+.+..++.+++.             .+..    ++.++
T Consensus       113 p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (443)
T PRK06058        113 PGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRD  192 (443)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccc
Confidence            63   456777999999999987   6778888999999999998777765431             1111    12223


Q ss_pred             H--------HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCC
Q 011567          225 M--------DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRS  292 (483)
Q Consensus       225 ~--------~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~  292 (483)
                      .        +.+++.++......  .+..+++|++||+++++|.+.|    |++|+++|++||+++|+||++++  +|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tG--fgRt  268 (443)
T PRK06058        193 PKGLATDGEEAAARAITVIEKQV--GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTG--FART  268 (443)
T ss_pred             ccccccchHHHHHHHHHHHHHhh--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcC
Confidence            1        22223332211100  1125899999999999888876    99999999999999999999985  5777


Q ss_pred             CCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHH
Q 011567          293 GRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL  369 (483)
Q Consensus       293 G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~  369 (483)
                      |.++ .+++|+.|   |++  +++|++|.  +-|++++++++++.+....++.+|  +.||+.|+++.++|+.++++ ++
T Consensus       269 G~~fa~~~~gv~P---Div--~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~--~gnpl~~aaa~a~L~~~~~~-~l  340 (443)
T PRK06058        269 GAWFACEHEGIVP---DLI--TTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTY--GGNPVACAAALAAIETIEED-DL  340 (443)
T ss_pred             hhhhHHHhcCCCC---CEE--EEcccccCCCccEEEEEcHHHHhhccCCCCCCCC--CCCHHHHHHHHHHHHHHHHc-CH
Confidence            7654 58899988   888  68999982  124578899999887655444455  45999999999999998765 48


Q ss_pred             HHHHHHHHHHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567          370 ITKLKKNTAILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR  446 (483)
Q Consensus       370 ~~~l~~~~~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~  446 (483)
                      .++++++.++|+++|+++. .+++  ...+.+.++.+.+.++.. ...+......+...+++ +||++.+....      
T Consensus       341 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~-~Gv~~~~~~~~------  412 (443)
T PRK06058        341 VARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGT-TEPDAELTKALAAAAHA-AGVIVLTCGTY------  412 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCC-CCCcHHHHHHHHHHHHH-CCeEEeccCCC------
Confidence            9999999999999998752 2232  124567788888743211 11233445677777665 59999764211      


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          447 LPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       .+.||+.|+..+|++||+++++++++++++
T Consensus       413 -~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        413 -GNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             -CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence             134999999999999999999999999865

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.8e-38  Score=324.77  Aligned_cols=352  Identities=18%  Similarity=0.238  Sum_probs=263.7

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+++++++++....+.    +....+...+|.++|++.+
T Consensus        31 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~----~~~~~~~~~~la~~L~~~~  105 (445)
T PRK09221         31 APRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPA----FQMGHPLAFELAERLAELA  105 (445)
T ss_pred             CCceEEeccccEEEeCCCCEEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCccc----cccCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999987   67999 899999999999998543221    1124577889999999998


Q ss_pred             C--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCC
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHND  224 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d  224 (483)
                      +  .+.+.+.+||++|++.|++...         +|..+|.+...||+.+..++.+++..            +..++..+
T Consensus       106 p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~  185 (445)
T PRK09221        106 PGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTL  185 (445)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCc
Confidence            5  3567777999999999986432         35568889999999877666555421            11122111


Q ss_pred             ------------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          225 ------------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       225 ------------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                                        .++++++++....      ..+++|++||+++++|.+.|    |++|+++|++||++||+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~------~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DE  259 (445)
T PRK09221        186 DLPENAFSKGQPEHGAELADDLERLVALHDA------STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDE  259 (445)
T ss_pred             cccccccCCChHHHHHHHHHHHHHHHHhcCC------CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEee
Confidence                              2456666654321      25899999999999999988    9999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHH
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPY  351 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~  351 (483)
                      ++++  +|++|.++ .+++++.|   ||+  +++|+++.   +.|.+++++++++.+...       .++++|+  .||+
T Consensus       260 V~tG--~GRtG~~~~~~~~gv~P---Di~--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~--~~pl  330 (445)
T PRK09221        260 VITG--FGRLGAAFAAERFGVTP---DII--TFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYS--AHPV  330 (445)
T ss_pred             hhhC--CCcCchhhHHHhcCCCC---CEE--EeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCC--cCHH
Confidence            9974  67778776 58899988   887  79999962   235567888998877531       1334444  5999


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE  429 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~  429 (483)
                      .+++++++|+.++++ ++.++++++.++|++.|+++.+++...  ...+.+..+.+......   ......++.+.+++ 
T Consensus       331 ~~aaa~a~L~~i~~~-~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~---~~~~~~~~~~~~~~-  405 (445)
T PRK09221        331 ACAAGLATLDIYREE-DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGA---PGARGYEAFMKCFE-  405 (445)
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccc---ccchHHHHHHHHHH-
Confidence            999999999999875 489999999999999998764433222  23455666666432110   11224467776665 


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +||++....          ..||++|++.+|++||+++++++++++.++
T Consensus       406 ~Gv~~~~~~----------~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        406 KGLLVRYTG----------DTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             CCeEEeecC----------CEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            599986531          349999999999999999999999998764

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=3.4e-38  Score=323.45  Aligned_cols=358  Identities=15%  Similarity=0.213  Sum_probs=262.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++....+.   .+...++...+|+++|++.+
T Consensus        32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~  107 (456)
T PRK07480         32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGY-GRKELADAAARQMRELPYYNT---FFKTTHPPAIELAAKLAEVA  107 (456)
T ss_pred             CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCC-CCHHHHHHHHHHHHhcCCccc---ccccCCHHHHHHHHHHHHhC
Confidence            36789999999999 899999999987   67999 899999999999998543211   11235688899999999998


Q ss_pred             CC--CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC-
Q 011567          168 GT--PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN-  223 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~-  223 (483)
                      +.  +.+++.+||++|++.|++..         ++|..+|.++..||+.+..++.+++..            +..+++. 
T Consensus       108 p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~  187 (456)
T PRK07480        108 PPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPY  187 (456)
T ss_pred             CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCc
Confidence            63  56777799999999998643         235568889999999887776665422            1111111 


Q ss_pred             --------C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          224 --------D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       224 --------d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                              +        .+.|++.+.+.      .+..+++|++||+++++|.+.|    |++|+++|++||++||+||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV  261 (456)
T PRK07480        188 WFGEGGDMTPEEFGLAAARQLEAKILEL------GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEV  261 (456)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHhc------CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence                    1        13444333221      1235899999999999898777    99999999999999999999


Q ss_pred             cccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHh--c--CCceeecCCCcHHHHHH
Q 011567          284 NSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL--S--SSGYVFSASLPPYLASA  355 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~--~--~~~~~fs~~~~p~~~aa  355 (483)
                      +++  +|++|+++ .+++|+.|   ||+  +++|+++.   +-|.+++++++++.++.  .  .++.+|+  .||+.|++
T Consensus       262 ~tG--fGRtG~~~a~~~~gv~P---Div--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~--gnpl~~Aa  332 (456)
T PRK07480        262 ICG--FGRTGEWFGSQHFGIKP---DLM--TIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYS--GHPVAAAV  332 (456)
T ss_pred             hhC--CCcCcchhhhhhcCCCC---Cee--eeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCC--cCHHHHHH
Confidence            975  57777765 58899988   887  79999972   12345678899888742  1  2334444  58999999


Q ss_pred             HHHHHHHHhcCcHHHHHH-HHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCch---hhHHHHHHHHHHHHHh
Q 011567          356 AITAIDVLEENPDLITKL-KKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMK---NDLQLLEDIADWALKE  429 (483)
Q Consensus       356 a~~al~~l~~~~~~~~~l-~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~---~~~~~~~~i~~~~l~~  429 (483)
                      +.++|++++++ ++.+++ +++.++|++.|+++..+++.  ....+.++.+.+..+.....   ........+...+++ 
T Consensus       333 a~a~L~~l~~~-~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-  410 (456)
T PRK07480        333 ALANLRILRDE-GIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFA-  410 (456)
T ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHH-
Confidence            99999999875 488999 58999999998775333322  23457788888843321110   111223456666665 


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +||++.+..          ..+|++|+..+|++|||++++++++++.++.+
T Consensus       411 ~Gll~~~~~----------~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        411 NGLIMRAVG----------DRMIISPPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             CCcEEeecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            599986521          23999999999999999999999999988643

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-38  Score=325.81  Aligned_cols=359  Identities=18%  Similarity=0.215  Sum_probs=264.3

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAK  165 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~  165 (483)
                      ..|.++++++|.|+| +|||+||||.++   ..+|| +||+|.+|+++|+++.- ...     ...+++...+|.++|++
T Consensus        44 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~-----~~~~~~~~~~la~~L~~  117 (464)
T PRK06938         44 RIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGH-NHPVVIEAIQQVLADELPLHT-----LDLTTPVKDQFVQDLFA  117 (464)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccCCccccccCC-CCHHHHHHHHHHHHhhhcccc-----cccCCHHHHHHHHHHHH
Confidence            347789999999999 899999999987   67999 89999999999997521 111     12245778899999999


Q ss_pred             hhCCC-----CEEEe-cccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCC------------eEEE--ecC
Q 011567          166 FLGTP-----DSILY-SYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVY--FKH  222 (483)
Q Consensus       166 ~~g~e-----~~i~~-~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~--~~~  222 (483)
                      .++.+     ..+++ +||++|++.|++.   +++|..+|.+...||+.+..++.+++.            .+..  +++
T Consensus       118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~  197 (464)
T PRK06938        118 SLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPY  197 (464)
T ss_pred             hCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCc
Confidence            87632     45566 6999999999764   568888999999999988777765432            1122  222


Q ss_pred             C---------------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          223 N---------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       223 ~---------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                      +               +.+.+++.+++...    .+..+++|++||++.++|.+.|    |++++++|++||++||+||+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~----~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV  273 (464)
T PRK06938        198 DYRCPFGLGGEAGVRANLHYLENLLDDPES----GVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEI  273 (464)
T ss_pred             cccccccCchhhHHHHHHHHHHHHHHhhcc----CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            2               14556666643211    1124899999999999888766    99999999999999999999


Q ss_pred             cccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567          284 NSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       284 ~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~  358 (483)
                      +++  +|++|.++ ++++|+.|   ||+  +++|++|  ||+    +++++++ +.+....++.+|  +.||+.|+++++
T Consensus       274 ~tG--fGRtG~~~a~e~~gv~P---Div--~~gKglg--gG~PlsAv~~~~~~-~~~~~~~~~~T~--~gnpla~Aaa~a  341 (464)
T PRK06938        274 QSG--FGRTGKMFAFEHAGIIP---DVV--VLSKAIG--GSLPLAVVVYREWL-DTWQPGAHAGTF--RGNQMAMAAGSA  341 (464)
T ss_pred             ccC--CCcCcHHHHHHhcCCCC---CEE--Eeecccc--CCCceEEEeehhHh-hccCCCCCCCCC--CcCHHHHHHHHH
Confidence            985  57777655 58999998   898  7999997  443    4566664 544333333444  459999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCc------hhhHHHHHHHHHHHHHh
Q 011567          359 AIDVLEENPDLITKLKKNTAILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSM------KNDLQLLEDIADWALKE  429 (483)
Q Consensus       359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~------~~~~~~~~~i~~~~l~~  429 (483)
                      +|++++++ ++.+++++++++|++.|+++. .+++  .....+.++.+.+.++....      ..+......+...|++ 
T Consensus       342 ~L~~l~~~-~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  419 (464)
T PRK06938        342 TLRYIKEH-RLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-  419 (464)
T ss_pred             HHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-
Confidence            99999764 589999999999999997752 2322  22456778888885432111      1122345667777765 


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +|+++.+....       ...||+.|+..+|++|++++++++++++.++..
T Consensus       420 ~Gll~~~~g~~-------~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~  463 (464)
T PRK06938        420 RGLILELGGRH-------GSVVRFLPPLIITAEQIDEVAEIFAEAVAAAVA  463 (464)
T ss_pred             CCeEEeecCCC-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            59998753210       133999999999999999999999999988654

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.6e-38  Score=322.98  Aligned_cols=359  Identities=17%  Similarity=0.229  Sum_probs=268.2

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+++......    .+.+++...+|.++|++.+
T Consensus        35 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~ql~~~~~~~~----~~~~~~~~~~lae~L~~~~  109 (457)
T PRK05639         35 FPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGY-SHPKLVKAVQEQVALIQHSMI----GYTHSERAIRVAEKLAEIS  109 (457)
T ss_pred             CCceEEeeecCEEEeCCCCEEEECCcCHHhhccCC-CCHHHHHHHHHHHHhcccccc----CccCCHHHHHHHHHHHhhC
Confidence            47889999999999 899999999997   67999 899999999999998532111    1223577789999999998


Q ss_pred             CC--CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCCC-----
Q 011567          168 GT--PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHND-----  224 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~d-----  224 (483)
                      +.  +.+.+.+||++|++.|++.   +++|..+|.+...||+.+..++.+++.             .+.++++++     
T Consensus       110 p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  189 (457)
T PRK05639        110 PIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNP  189 (457)
T ss_pred             CCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccc
Confidence            64  4667779999999999754   568888999999999988766665431             133344432     


Q ss_pred             --------HHH--------HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcc
Q 011567          225 --------MDS--------LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESN  284 (483)
Q Consensus       225 --------~~~--------Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~  284 (483)
                              .++        +++.+....    ..+..+++|++||+++.+|.+.|    |++|+++|++||++||+||++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~le~~l~~~~----~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~  265 (457)
T PRK05639        190 WGINGYEEPDELINRFLDYLENYVFSHV----VPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQ  265 (457)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHhh----cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence                    222        222221110    01236999999999999888776    999999999999999999999


Q ss_pred             ccccccCCCCcc-ccccCCCCCceeEEEccccccccC-C-CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHH
Q 011567          285 SFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT-E-GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAID  361 (483)
Q Consensus       285 s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~-~-GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~  361 (483)
                      + | +|++|+++ .+++|+.|   ||+  +++|++|. . -|++++++++++. ...  .+.++.+.||+.|++++++|+
T Consensus       266 t-G-~GrtG~~~a~~~~gv~P---Div--~~gK~l~gG~pi~av~~~~~i~~~-~~~--~~~~T~~g~p~~~aaa~a~l~  335 (457)
T PRK05639        266 T-G-IGRTGKWFASEWFEVKP---DLI--IFGKGVASGMGLSGVIGRKELMDL-TSG--SALLTPAANPVISAAAEATLE  335 (457)
T ss_pred             h-c-cCcCchHHHHHhcCCCC---CEE--EechhhcCCCcceeEEehHHHHhh-cCC--CcccCCCcCHHHHHHHHHHHH
Confidence            8 4 78889875 48899987   898  59999972 1 2567889999883 222  233455679999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHHHhhccC-CCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          362 VLEENPDLITKLKKNTAILRTGLSDI-HGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       362 ~l~~~~~~~~~l~~~~~~l~~~L~~~-~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .++++ ++.++.++++++|++.|+++ .++++.  ....+.++.+.+..+...  .+......+...+++ +|+++.+..
T Consensus       336 ~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~--~~~~~~~~~~~~~~~-~Gv~~~~~g  411 (457)
T PRK05639        336 IIEEE-NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGK--PDPELTGKICWRAFE-LGLILPSYG  411 (457)
T ss_pred             HHHHc-cHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCC--CCHHHHHHHHHHHHh-CCeEEeecC
Confidence            99875 48899999999999999874 233332  245677888877543221  123345677777665 599997542


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ..       ...||+.|++.+|++|+|+++++++++++++..
T Consensus       412 ~~-------~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~  446 (457)
T PRK05639        412 MF-------GNVIRITPPLVITKEIAEKGLEIMERAIKDALA  446 (457)
T ss_pred             CC-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            10       134999999999999999999999999988653

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.8e-38  Score=323.31  Aligned_cols=341  Identities=21%  Similarity=0.323  Sum_probs=269.1

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   ++||+ +||++.+++.+++++++..+.    .| ..+...+|+++|++++
T Consensus        25 ~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~----~~-~~~~~~~la~~l~~~~   98 (398)
T PRK03244         25 PPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVSN----LF-ATEPQIALAERLVELL   98 (398)
T ss_pred             CCceEEEeeecEEEECCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCccC----cc-CCHHHHHHHHHHHHhC
Confidence            35778999999999 899999999995   89999 799999999999999765321    23 2456689999999998


Q ss_pred             CCC---CEEEecccHHHHHhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHHHHHH
Q 011567          168 GTP---DSILYSYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMDSLRN  230 (483)
Q Consensus       168 g~e---~~i~~~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~~Le~  230 (483)
                      |.+   +++++++|++|+..+++...  ++.++|.++..||+....++.+++            ..+..++++|++++++
T Consensus        99 ~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~  178 (398)
T PRK03244         99 GAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAA  178 (398)
T ss_pred             CCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHH
Confidence            853   56677999999999988554  455888888999988776665544            2346677889999988


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCC
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVD  305 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~  305 (483)
                      .+..          .+++|++||+++++|.+.|    +++|+++|++||+++|+||+|++  +|++|+++ .+++++.| 
T Consensus       179 ~~~~----------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~gr~g~~~~~~~~~~~p-  245 (398)
T PRK03244        179 AVDD----------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTG--IGRTGAWFAHQHDGVTP-  245 (398)
T ss_pred             hhcC----------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CcccchHHhhhhhCCCC-
Confidence            7731          3789999999999999988    89999999999999999999984  67888764 36778877 


Q ss_pred             ceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          306 KIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                        |++  |+||++|+  +-|++++++++++.+......++|  +.||+.++++.++|+.+++. +..++++++.++|++.
T Consensus       246 --Di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~  318 (398)
T PRK03244        246 --DVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTF--GGNPVACAAALAVLDTIASE-GLLENAERLGEQLRAG  318 (398)
T ss_pred             --CEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCcCCC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence              776  89999982  236777888888887654445555  45899999999999988754 5889999999999999


Q ss_pred             hccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          384 LSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       384 L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      |+++ ++++.  ....++++++.+..+         ...++.+++++ +||++.+..         ++.||++++..+|+
T Consensus       319 L~~~-~~~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~-~Gv~~~~~~---------~~~iR~~p~~~~t~  378 (398)
T PRK03244        319 IEAL-GHPLVDHVRGRGLLLGIVLTAP---------VAKAVEAAARE-AGFLVNAVA---------PDVIRLAPPLIITD  378 (398)
T ss_pred             HHhc-CCCceeeEeeccEEEEEEEecc---------HHHHHHHHHHH-CCeEEeecC---------CCEEEEECCCcCCH
Confidence            9886 44321  124677888887421         23467777665 599997642         14499999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISAVV  478 (483)
Q Consensus       462 edi~~~~~~l~~~~~~~  478 (483)
                      +||++++++|+++++++
T Consensus       379 ~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        379 AQVDAFVAALPAILDAA  395 (398)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998764

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=9.7e-38  Score=319.47  Aligned_cols=374  Identities=14%  Similarity=0.157  Sum_probs=273.0

Q ss_pred             HHHHHHHhhcCCCCC-CcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567           67 KEIDELCDEWVPESL-IPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        67 ~e~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      +++.+...+..|-.. .........+.|.++++++|.++| +||++||||.++   ..+|| +||+|.+|+.+++++. .
T Consensus        31 ~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh-~~p~i~~Av~~q~~~~-~  108 (453)
T PRK07046         31 RALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGH-SPAPVARALAEQARRG-L  108 (453)
T ss_pred             HHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCC-CCHHHHHHHHHHHHhC-C
Confidence            345555556666654 111111112457889999999999 899999999886   57899 8999999999999973 2


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhh--c---
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYL--S---  213 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~--s---  213 (483)
                      .      +...++...+++++|++.++.+.+.+++||++|++.|++   ++++|..+|.+...||+.....+..  +   
T Consensus       109 ~------~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~  182 (453)
T PRK07046        109 T------TMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRP  182 (453)
T ss_pred             C------CCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCC
Confidence            1      223467889999999999988888888999999999965   5778989999999999863222110  0   


Q ss_pred             -------C------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCc
Q 011567          214 -------R------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRF  276 (483)
Q Consensus       214 -------~------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~  276 (483)
                             +      ..+..+++||.+.+++.+..  .       .+++|++||++++.|.+.|    |++++++|++||+
T Consensus       183 ~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~--~-------~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~  253 (453)
T PRK07046        183 VQRPGLLGQVHDLTATTRVVEFNDLAALEAALAD--G-------DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGT  253 (453)
T ss_pred             CCCCCCCCCCccccCceEeeCCCCHHHHHHHhCC--C-------CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence                   1      23466788999999988842  2       3899999999999998877    8999999999999


Q ss_pred             EEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhc------CC-ceeecCC
Q 011567          277 RVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLS------SS-GYVFSAS  347 (483)
Q Consensus       277 ~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~------~~-~~~fs~~  347 (483)
                      +||+||+++ +++|.  .|..+++|+.|   ||+  +++|++|.  +.|.+++++++++.+...      +. .+..+.+
T Consensus       254 llI~DEV~t-fr~g~--Gg~~~~~gv~P---Di~--t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~  325 (453)
T PRK07046        254 LLVIDETHT-ISSGP--GGYTRAHGLEP---DFL--VVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLS  325 (453)
T ss_pred             EEEEEcccc-CccCC--cchhHHhCCCc---cce--eehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCc
Confidence            999999999 44554  24567889988   898  79999981  124467899999987531      11 1222335


Q ss_pred             CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCC-Cch-----hhHHH
Q 011567          348 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTG-SMK-----NDLQL  418 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~-~~~-----~~~~~  418 (483)
                      .||+.|++++++|+++++. +..++++++.++|++.|+++   .++.......+.++.+.+.+... ...     .+...
T Consensus       326 gnpl~~aa~~a~L~~l~~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~  404 (453)
T PRK07046        326 ANALAMAAMRATLAEVMTE-AAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPEL  404 (453)
T ss_pred             ccHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHH
Confidence            6999999999999999764 48999999999999999753   13332223345566776632211 100     02234


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ...+...+++ +||++.+..          ..++++++  ||++|||+++++++++++++.
T Consensus       405 ~~~~~~~~~~-~Gv~~~~~~----------~~~~~~p~--~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        405 EAALHLYLLN-RGVLITPFH----------NMMLVCPA--TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             HHHHHHHHHH-CCCEEeccc----------CcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence            4566666665 599987531          12677764  999999999999999998764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=8.3e-38  Score=320.81  Aligned_cols=363  Identities=16%  Similarity=0.222  Sum_probs=263.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++.+. ....+ .  ..+.+...+|+++|++.+
T Consensus        40 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~q~~~~-~~~~~-~--~~~~~~~~~lAe~L~~~~  114 (459)
T PRK06931         40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGH-NHPDVLQSIQDVLTSG-LPLHT-L--DLTTPLKDAFSEYLLSLL  114 (459)
T ss_pred             CCceEEeccccEEEeCCCCEEEEcccchhhccCCC-CCHHHHHHHHHHHhhh-ccccc-c--ccCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999997   67999 8999999999999862 11111 1  124578889999999998


Q ss_pred             CCC----CEEEe-cccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC---
Q 011567          168 GTP----DSILY-SYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND---  224 (483)
Q Consensus       168 g~e----~~i~~-~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d---  224 (483)
                      +..    ..+++ +||++|++.|++   .+++|..+|.+...||+.+..++.+++.            .+..++.+|   
T Consensus       115 p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (459)
T PRK06931        115 PGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYR  194 (459)
T ss_pred             CCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCcccc
Confidence            632    34566 899999999975   4678888999999999988777765432            122222222   


Q ss_pred             ----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567          225 ----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG  290 (483)
Q Consensus       225 ----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg  290 (483)
                                .+.+++.+++...+....+.++++|++||+++++|.+.|    |++|+++|++||++||+||++++  +|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tG--fG  272 (459)
T PRK06931        195 CPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAG--FA  272 (459)
T ss_pred             ccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc--CC
Confidence                      233433333322111112345899999999999888766    99999999999999999999985  56


Q ss_pred             CCCCcc-ccccCCCCCceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          291 RSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       291 ~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      ++|.++ .+++|+.|   ||+  +++|++|  ||+    +++++++ +.+....++.+|  +.||+.|++++++|+++++
T Consensus       273 RtG~~~a~~~~gv~P---Div--t~gK~l~--gG~Pi~av~~~~~~-~~~~~~~~~~T~--~gnpla~aaala~L~~l~~  342 (459)
T PRK06931        273 RTGKMFAFEHAGIEP---DII--VMSKAVG--GGLPLAVLGIKKEF-DAWQPGGHTGTF--RGNQLAMATGLTTLKILKE  342 (459)
T ss_pred             cCchHHHhhhcCCCC---CEE--Eeccccc--CCcceeeeeeHHHH-hhccCCCCCCCC--CCCHHHHHHHHHHHHHHHh
Confidence            777655 48999988   898  7999998  443    4455553 555333334444  4599999999999999987


Q ss_pred             CcHHHHHHHHHHHHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCC------chhhHHHHHHHHHHHHHhCCEEEEe
Q 011567          366 NPDLITKLKKNTAILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGS------MKNDLQLLEDIADWALKEDGVFVVT  436 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~------~~~~~~~~~~i~~~~l~~~Gv~v~~  436 (483)
                      . ++.++++++.++|++.|+++. .+++  .....+.++.+.+..+...      ...+......+...+++ +|+++.+
T Consensus       343 ~-~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~  420 (459)
T PRK06931        343 E-NLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLLLER  420 (459)
T ss_pred             C-CHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcEEee
Confidence            5 489999999999999997752 2222  2234677888888543211      11123345667777665 5999875


Q ss_pred             ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          437 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       437 ~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ....       +..+|+.|++.+|++|+++++++++++++++++
T Consensus       421 ~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        421 GGRN-------GNVVRLLPPLLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             cCCC-------CCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            3210       134999999999999999999999999998775

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=3.7e-38  Score=319.93  Aligned_cols=340  Identities=19%  Similarity=0.237  Sum_probs=263.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   +++|| +||++.+|+.+++++....+   .  ..+.+.+.+++++|+++.
T Consensus        13 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~---~--~~~~~~~~~la~~l~~~~   86 (389)
T PRK01278         13 ADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVS---N--LYRIPEQERLAERLVENS   86 (389)
T ss_pred             CCceEEeeecCEEEECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCccc---c--ccCChHHHHHHHHHHhhC
Confidence            46788999999999 899999999995   89999 89999999999999732211   1  125678899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD  226 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~  226 (483)
                      +.+++++++||++|++.++++.         ++|.++|..+..||+.+..++..++..            +..++++|++
T Consensus        87 ~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  166 (389)
T PRK01278         87 FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIE  166 (389)
T ss_pred             CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHH
Confidence            8788888899999999998776         445578899999999887777655432            2346778999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc-C---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA-P---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~-~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      ++++.++.          ++++|++||+++++|... |   +++|+++|++||++||+||+|++  +|++|+++. ++++
T Consensus       167 ~l~~~l~~----------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g--~g~~g~~~~~~~~~  234 (389)
T PRK01278        167 ALKAAITP----------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCG--MGRTGKLFAHEWAG  234 (389)
T ss_pred             HHHHhhCC----------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCCcceeecccC
Confidence            99887743          378999999999888544 3   99999999999999999999984  577777554 6778


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.|   |++  |++|++++  +.|++++++++++.+....++.+|+  .||+.++++.++++.+++. +..++++++.++
T Consensus       235 ~~p---di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~l~~~-~~~~~~~~~~~~  306 (389)
T PRK01278        235 VTP---DIM--AVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYG--GNPLAMAVGNAVLDVILAP-GFLDNVQRMGLY  306 (389)
T ss_pred             CCC---CEE--EEehhccCCcceEEEEEcHHHHhccCCCCCCCCCC--ccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Confidence            876   765  89999973  2477888899988876555555554  5899999999999988653 577888888888


Q ss_pred             HHHhhccCC-Cce-ee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          380 LRTGLSDIH-GLS-IA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       380 l~~~L~~~~-~~~-i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      +++.|+++. ..+ +.  ..+.+.++++.+..          ...+++.+++++ ||++.+..         ...|||++
T Consensus       307 l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~----------~~~~~~~~l~~~-GV~~~p~~---------~~~lR~~p  366 (389)
T PRK01278        307 LKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV----------PNRDLVQALRDE-GLLTVGAG---------DNVVRLLP  366 (389)
T ss_pred             HHHHHHHHHhhCCCceeeEecccEEEEEEEec----------CHHHHHHHHHHC-CeEEeecC---------CCEEEEeC
Confidence            888886541 111 11  12345666666531          134677777765 99987652         13499999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +..+|++++++++++|++++.+
T Consensus       367 ~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        367 PLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             CcccCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=5.7e-38  Score=320.60  Aligned_cols=355  Identities=17%  Similarity=0.212  Sum_probs=263.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++.+....    ...+.+...+|.++|++.+
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~----~~~~~~~~~~lae~l~~~~   95 (425)
T PRK09264         21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGITHG----LDMHTTAKREFLETFEETI   95 (425)
T ss_pred             CCccEEeeecCEEEeCCCCEeeecccchhhccCCC-CCHHHHHHHHHHHHhcccccc----cccCcHHHHHHHHHHHHhh
Confidence            46789999999999 899999999997   67999 899999999999997543221    1123567889999999975


Q ss_pred             C----CC-CEEEe-cccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecC----
Q 011567          168 G----TP-DSILY-SYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKH----  222 (483)
Q Consensus       168 g----~e-~~i~~-~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~----  222 (483)
                      .    .+ ..+++ +||++|++.|++.   +++|..+|.+..+||+.+..++.+++.            .+..+++    
T Consensus        96 ~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~  175 (425)
T PRK09264         96 LKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYF  175 (425)
T ss_pred             cCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCcc
Confidence            2    33 34455 7999999999754   568888999999999988776665431            2333443    


Q ss_pred             ----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          223 ----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       223 ----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                          +|++++++.+++...    .+..+++|++||+++++|.+.+    |++|+++|++||++||+||++++  +|++|+
T Consensus       176 ~~~~~~~~~l~~~l~~~~~----~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--~GrtG~  249 (425)
T PRK09264        176 GGDVDTLAYLEKLLEDSSS----GVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAG--CGRTGT  249 (425)
T ss_pred             ccchhHHHHHHHHHHhccC----CCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhC--CccccH
Confidence                467788888865321    1124899999999999887553    99999999999999999999985  788887


Q ss_pred             cc-ccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHH
Q 011567          295 GL-TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI  370 (483)
Q Consensus       295 g~-~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~  370 (483)
                      ++ .+++++.|   ||+  +++|++|+.|   |++++++++ +.+....++.+|  +.+|+.++++.++++.+.+.+++.
T Consensus       250 ~~~~~~~~v~P---Di~--t~~K~l~~~G~pigav~~~~~i-~~~~~~~~~~T~--~gnp~~~aaa~a~l~~~~~~~~l~  321 (425)
T PRK09264        250 FFSFERAGITP---DIV--TLSKSISGYGLPMALVLIKPEL-DVWKPGEHNGTF--RGNNLAFVTATAALEEYWSDDAFE  321 (425)
T ss_pred             HHHHhhcCCCC---CEE--EeccccCCCccceEEEEEchhh-hccCCCccCCCC--CCCHHHHHHHHHHHHHHHhhhHHH
Confidence            65 47889887   776  7899998544   677788776 343322233344  357999999999994333335689


Q ss_pred             HHHHHHHHHHHHhhccCC-Cce---eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567          371 TKLKKNTAILRTGLSDIH-GLS---IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR  446 (483)
Q Consensus       371 ~~l~~~~~~l~~~L~~~~-~~~---i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~  446 (483)
                      ++++++.+++++.|+++. .++   ......+.++++.+.+        .....+++..+++ +||++.+....      
T Consensus       322 ~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~--------~~~~~~l~~~~~~-~Gv~~~~~~~~------  386 (425)
T PRK09264        322 KEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGD--------GELAGKIAAEAFE-NGLIIETSGPE------  386 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecC--------hHHHHHHHHHHHH-CCCEEeccCCC------
Confidence            999999999999886642 122   1123457788888842        2334567776665 59998764221      


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                       ...||++|+..+|++||++++++|+++++++..+
T Consensus       387 -~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        387 -DEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE  420 (425)
T ss_pred             -CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence             1349999999999999999999999999887654

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=100.00  E-value=1.7e-37  Score=310.79  Aligned_cols=348  Identities=36%  Similarity=0.613  Sum_probs=279.8

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~  188 (483)
                      |+|++|++++|||+..||++.+++++.+++|+.+..+.+...|..+...++++.+++++|.++.+++++|++++..++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~   80 (349)
T cd06454           1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST   80 (349)
T ss_pred             CCceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence            57999999999999889999999999999987655555666678899999999999999999899999999999988999


Q ss_pred             hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567          189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI  268 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~  268 (483)
                      ++++||.|++++++|.++..++...|.+++.++..|.+++++++++...     +.++++|+++++++++|.+.|+++|+
T Consensus        81 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~-----~~~~~~v~~~~~~~~tG~~~~~~~i~  155 (349)
T cd06454          81 LAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARR-----PYGKKLIVTEGVYSMDGDIAPLPELV  155 (349)
T ss_pred             hcCCCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHhhc-----cCCCeEEEEeccccCCCCccCHHHHH
Confidence            9999999999999999999888989999988888899999998876431     12468999999999999999999999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecCCC
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASL  348 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~~~  348 (483)
                      ++|++||+++|+||+|+.|.++..|.+. .++.....+.|++++|++|++++.||++++++++++.++.....+.++++.
T Consensus       156 ~~~~~~~~~livD~a~~~g~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~~~~~~  234 (349)
T cd06454         156 DLAKKYGAILFVDEAHSVGVYGPHGRGV-EEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSL  234 (349)
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCCh-hhhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhhccCCC
Confidence            9999999999999999988776544432 223333456799999999999988999999999988877655555566667


Q ss_pred             cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          349 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       349 ~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                      ++..++++.++++.+.+.....++++++.+++.+.|.++ ++++..++.+.+..+.+.+        .....++.+.+++
T Consensus       235 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~L~~  305 (349)
T cd06454         235 PPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDD--------PAKAVAFSDALLE  305 (349)
T ss_pred             CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCC--------hHHHHHHHHHHHh
Confidence            888888888999887664567889999999999999886 7776654444444443321        1223567776655


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                       +||.+.+..++....  ....+|++++..+|++|+++++++|+++
T Consensus       306 -~gI~~~~~~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         306 -RGIYVQAIRYPTVPR--GTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             -CCceEEEecCCccCC--CCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence             499998754432110  0245999999999999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-37  Score=318.50  Aligned_cols=358  Identities=18%  Similarity=0.218  Sum_probs=268.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+.+....+.    .+.+++...+|.++|++.+
T Consensus        23 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~la~~L~~~~   97 (443)
T PRK08360         23 YPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGH-NNPRVVKAIKEQTDKLIHYTP----IYGFPVEPLLLAEKLIEIA   97 (443)
T ss_pred             CCceEEecceeEEEECCCCEEEEccccHhhcccCC-CCHHHHHHHHHHHHhccCccc----cccCcHHHHHHHHHHHHhC
Confidence            37789999999999 899999999997   67999 899999999999998533211    2334677899999999998


Q ss_pred             CC--CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC------
Q 011567          168 GT--PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND------  224 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d------  224 (483)
                      +.  +.+++.+||++|+++|++   .+++|..+|.+...||+....++.+++.            .+..+++++      
T Consensus        98 p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (443)
T PRK08360         98 PGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPF  177 (443)
T ss_pred             CCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccc
Confidence            64  456666999999999975   4678888999999999987666655442            122222222      


Q ss_pred             -----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccc
Q 011567          225 -----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVL  289 (483)
Q Consensus       225 -----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~l  289 (483)
                                 .+.+++.++...     .+.++++|++||+++++|.+.|    +++|+++|++||+++|+||+|++  +
T Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~  250 (443)
T PRK08360        178 GKEPGSCKMECVEYIKEKFEGEV-----YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSG--L  250 (443)
T ss_pred             cCchhhhHHHHHHHHHHHHHhcc-----CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--C
Confidence                       233444443311     1125899999999999998776    89999999999999999999985  6


Q ss_pred             cCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC
Q 011567          290 GRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       290 g~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~  366 (483)
                      |++|+++ .+++++.|   |++  ++||++|+  +.|++++++++++.+....  +.++.+.+|+.++++.++|+.+++.
T Consensus       251 gr~G~~~a~~~~~~~p---Dii--tlsK~l~~G~pigav~~~~~i~~~~~~~~--~~~T~~~~p~~~aaa~a~l~~l~~~  323 (443)
T PRK08360        251 GRTGKWFAIEHFGVEP---DII--TLGKPLGGGLPISATIGRAEIMDSLPPLA--HAFTLSGNPVASAAALAVIEEIEEK  323 (443)
T ss_pred             CcCccchhhhhcCCCC---CEE--EecccccCCceeEEEEEcHHHHhhhcCCC--CCCCCCcCHHHHHHHHHHHHHHHHc
Confidence            7777765 46788877   776  78999983  2478899999999886443  3445556899999999999999765


Q ss_pred             cHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567          367 PDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD  443 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~  443 (483)
                       ++.++++++.++|++.|+++. .+++.  ..+.+.++.+.+.++......+......+...+++ +|+++.+...    
T Consensus       324 -~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~----  397 (443)
T PRK08360        324 -NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFFSG----  397 (443)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeecCC----
Confidence             489999999999999987641 22222  23467788888754322111223345577777665 5999865321    


Q ss_pred             cCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          444 KCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       444 ~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                           ..+|++|++.+|++||++++++++++++++-
T Consensus       398 -----~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~  428 (443)
T PRK08360        398 -----NVLRIQPPLTIEKEVLDEGLDILEEAIEDVE  428 (443)
T ss_pred             -----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 3499999999999999999999999998753

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-37  Score=318.23  Aligned_cols=354  Identities=21%  Similarity=0.282  Sum_probs=264.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++++....+..    ...++...+|+++|++.+
T Consensus        36 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~----~~~~~~~~~lAe~L~~~~  110 (441)
T PRK05769         36 YPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGH-AHPKVVKAVKEQAEKFLHYSLT----DFYYEPAVELAERLVEIA  110 (441)
T ss_pred             CCeeEEecceEEEEeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhccCccCc----ccCCHHHHHHHHHHHHhC
Confidence            47789999999999 899999999997   67999 8999999999999985432111    113567889999999988


Q ss_pred             C---CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecC------
Q 011567          168 G---TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKH------  222 (483)
Q Consensus       168 g---~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~------  222 (483)
                      +   .+.+++.+||++|++.|++   .+++|..+|.+..+||+.+...+.+++.             .+..+++      
T Consensus       111 p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (441)
T PRK05769        111 PGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRN  190 (441)
T ss_pred             CCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccc
Confidence            6   3566667999999999975   4678888999999999988776665432             1222222      


Q ss_pred             --C--CH--------HHHHH-HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccc
Q 011567          223 --N--DM--------DSLRN-TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNS  285 (483)
Q Consensus       223 --~--d~--------~~Le~-~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s  285 (483)
                        +  |.        +.+|+ +++...     .+..+++|++||+++++|.+.|    |++|+++|++||+++|+||+++
T Consensus       191 ~~~~~~~~~~~~~~~~~le~~~~~~~~-----~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t  265 (441)
T PRK05769        191 PWGIENPEECGNAVLDFIEDYLFKKLV-----PPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT  265 (441)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHhhcc-----CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence              1  22        22333 222100     1235899999999999999988    9999999999999999999998


Q ss_pred             cccccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH
Q 011567          286 FGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV  362 (483)
Q Consensus       286 ~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~  362 (483)
                      +  +|++|+++ .+++|+.|   |++  +++|++|.  +.|++++++++++.. ...++.+|+  .+|+.++++.++|++
T Consensus       266 G--~gr~G~~~a~~~~gv~p---Div--t~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~--g~p~~~aaa~a~L~~  335 (441)
T PRK05769        266 G--MGRTGKMFAIEHFGVEP---DII--TLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFG--GNPVAAAAALATLEE  335 (441)
T ss_pred             C--CCcccceehhhccCCCC---CEE--EEcccccCCcccEEEEEehhhhhcC-CCCCCCCCC--cCHHHHHHHHHHHHH
Confidence            4  67888775 47889887   887  69999973  246788888887543 233444554  489999999999999


Q ss_pred             HhcCcHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          363 LEENPDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       363 l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      +++  ++.+++++++++|++.|+++. .+++.  ....+.++.+.+.++.  .+.+......+...+++ +||++.+...
T Consensus       336 l~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~-~Gil~~~~~~  410 (441)
T PRK05769        336 LEE--GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFK-RGLLLLGAGK  410 (441)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHh-CCcEEecCCC
Confidence            987  689999999999999997652 13322  2345678888874332  11123345667777665 5999865321


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                               ..||++|+..+|++|||++++++++++.+++
T Consensus       411 ---------~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  441 (441)
T PRK05769        411 ---------SAIRIIPPLIITEEEADIGLEILEEAIKELL  441 (441)
T ss_pred             ---------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence                     3499999999999999999999999998753

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=9.4e-38  Score=319.34  Aligned_cols=352  Identities=20%  Similarity=0.291  Sum_probs=269.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   .++|| +||+|.+++.+++++ +.+      .+...+...+|+++|++.+
T Consensus        32 ~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~-~~~------~~~~~~~~~~la~~L~~~~  103 (426)
T PRK00062         32 TPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAEK-GLS------FGAPTELEVELAELVIELV  103 (426)
T ss_pred             CCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHHh-CCc------CCCCCHHHHHHHHHHHHhC
Confidence            35678999999999 899999999997   68999 899999999999988 331      2334577889999999987


Q ss_pred             -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhc-------------C------CeEEEecCCC
Q 011567          168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS-------------R------STVVYFKHND  224 (483)
Q Consensus       168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s-------------~------~~v~~~~~~d  224 (483)
                       +.+++++++||++|++.|++.   ++++.++|.++..||+.+......+             +      .....++|+|
T Consensus       104 ~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  183 (426)
T PRK00062        104 PSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYND  183 (426)
T ss_pred             CCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCC
Confidence             456777779999999999876   5677889999999998763322221             1      1245678899


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                      ++++++.++....       .+++|++||+++++|.+.|    |++|+++|++||+++|+||+|++.+.|  +.+..+++
T Consensus       184 ~~~l~~~i~~~~~-------~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g--~~~~~~~~  254 (426)
T PRK00062        184 LEAVEELFEEYGD-------EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA--LGGAQGYY  254 (426)
T ss_pred             HHHHHHHHHhCCC-------cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC--CccHHHHh
Confidence            9999998865322       4899999999999999998    999999999999999999999854443  24556788


Q ss_pred             CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      ++.|   |++  +++|++++  +.|++++++++++.++..+..+.+++ +.+|..++++.++|+.++++ ++.++++++.
T Consensus       255 ~~~p---Di~--~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~-~~~~~~~~~~  328 (426)
T PRK00062        255 GVTP---DLT--TLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP-GFYEELEALT  328 (426)
T ss_pred             CCCc---chH--hhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc-hHHHHHHHHH
Confidence            8877   765  89999973  24667889999998864443445443 67899999999999999765 5899999999


Q ss_pred             HHHHHhhccC---CCceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          378 AILRTGLSDI---HGLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       378 ~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      +++++.|+++   .++.....+.+.++.+.+.++...     ...+......+...+++ +||++.+..++         
T Consensus       329 ~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~~~~---------  398 (426)
T PRK00062        329 KRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPSQFE---------  398 (426)
T ss_pred             HHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecCCcC---------
Confidence            9999988753   144333345788888888543111     01123345577877665 59999775433         


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+++  ++.+|++||++++++++++++++
T Consensus       399 ~~~~--~~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        399 AGFV--SAAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             ceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence            2555  47899999999999999998754

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-37  Score=316.44  Aligned_cols=357  Identities=17%  Similarity=0.206  Sum_probs=266.0

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |+++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++++....+.    .....+...++.++|++.++
T Consensus        23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~----~~~~~~~~~~la~~l~~~~p   97 (425)
T PRK07495         23 QIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGH-RHPRVIAAVKAQLDRFTHTCH----QVVPYENYVRLAERLNALVP   97 (425)
T ss_pred             CeeEEeeeecEEEeCCCCEEEEccccHHhhccCC-CCHHHHHHHHHHHhhccCccc----CccCCHHHHHHHHHHHHhCC
Confidence            6789999999999 899999999997   67999 899999999999998542111    12245778899999999986


Q ss_pred             C---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCCC-----
Q 011567          169 T---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHND-----  224 (483)
Q Consensus       169 ~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~d-----  224 (483)
                      .   +.+++.+||++|++.|++   .+++|..+|.+...||+.+..++.+++.             .+..++.++     
T Consensus        98 ~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  177 (425)
T PRK07495         98 GDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGV  177 (425)
T ss_pred             CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccc
Confidence            3   456666999999999976   4568888999999999987766655432             122333332     


Q ss_pred             -----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567          225 -----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       225 -----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g  295 (483)
                           .+++++.+++..     .+...++|++||+++++|.+.|    +++|+++|++||+++|+||++++  +|++|.+
T Consensus       178 ~~~~~~~~l~~~~~~~~-----~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~  250 (425)
T PRK07495        178 SVEQSLAALDKLFKADV-----DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTG--FARTGKL  250 (425)
T ss_pred             cHHHHHHHHHHHHHhcc-----CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhc--CCcCCCc
Confidence                 334455554210     1125899999999999886644    89999999999999999999984  6778865


Q ss_pred             c-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHH
Q 011567          296 L-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITK  372 (483)
Q Consensus       296 ~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~  372 (483)
                      + .+++++.|   ||+  ||+|++++  +.|++++++++++.+.......+|  +.||+.++++.++++++++. ++.++
T Consensus       251 ~a~~~~gv~p---Di~--tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~--~~~pl~~aaa~a~l~~l~~~-~l~~~  322 (425)
T PRK07495        251 FAMEHHEVAA---DLT--TMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTY--GGNPLGIAAAHAVLDVIEEE-DLCER  322 (425)
T ss_pred             eeecccCCCC---CEE--eehhhhcCCccceEEEEcHHHHhccCCCCcCCCC--CCCHHHHHHHHHHHHHHHhc-hHHHH
Confidence            4 57788877   886  89999972  246688899999887654444444  56899999999999999764 58999


Q ss_pred             HHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          373 LKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       373 l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      +++++++|++.|+++. .++..  ....+.++++.+.++.. ...+......+...+++ +|+++......       .+
T Consensus       323 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~-~~~~~~~~~~~~~~~~~-~Gvl~~~~g~~-------~~  393 (425)
T PRK07495        323 ANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADS-GLPSAEFANRVRLKALE-KGLILLTCGVH-------GN  393 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCC-CCccHHHHHHHHHHHHH-CCeEEeecCCC-------CC
Confidence            9999999999987652 12221  12457788888854321 11223345567776665 59998653210       13


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .|||.|++.+|++|+|+++++|+++++++
T Consensus       394 ~~r~~Ppl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        394 VIRFLAPITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             EEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999875

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=9.9e-38  Score=318.21  Aligned_cols=341  Identities=21%  Similarity=0.256  Sum_probs=265.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| +||++||||.++   ..+|| +||+|.+++.+++++++.++.   .+  ..+.+.+|+++|++++
T Consensus        23 ~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh-~~~~i~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~l~~~~   96 (401)
T PRK00854         23 LDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGH-CHPKILAAMVEQAGRLTLTSR---AF--RNDQLAPLYEELAALT   96 (401)
T ss_pred             CCceEEeeeeCEEEECCCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccccc---cc--CCHHHHHHHHHHHhhC
Confidence            35678999999999 799999999886   56899 899999999999999765332   22  2468899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCC
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHND  224 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d  224 (483)
                      |.+.+++++||++|++.|++++.           ++.++|.++..+|+++...+.+++            ..+..++++|
T Consensus        97 ~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  176 (401)
T PRK00854         97 GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGD  176 (401)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCC
Confidence            99999999999999999998773           345789999999998765543221            2456788999


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~  299 (483)
                      ++++++.+.+          ++++|++|++++++|.+.|    |++|+++|++||+++|+||+|+ | +|++|.++. ++
T Consensus       177 ~~~le~~i~~----------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g-~g~~g~~~~~~~  244 (401)
T PRK00854        177 AEALEAAITP----------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G-LGRTGKLLAEEH  244 (401)
T ss_pred             HHHHHHHhCC----------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCchHhHHhh
Confidence            9999987742          3789999999999999987    9999999999999999999998 3 577776554 46


Q ss_pred             cCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      +++.|   |+++  ++|+++.   ++|++++++++++.++....+.+|+  .+|+.++++.++|+.+++. ++.++++++
T Consensus       245 ~g~~~---D~~~--~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aa~~a~L~~l~~~-~~~~~~~~~  316 (401)
T PRK00854        245 EGIEA---DVTL--IGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFG--GNPLACAVARAALKVLTEE-GMIENAAEM  316 (401)
T ss_pred             cCCCC---CEEE--ecccccCCccCeEEEEEcHHHHhcccCCCCCCCCC--cCHHHHHHHHHHHHHHHHc-CHHHHHHHH
Confidence            77766   7774  6799962   2456889999998876544444554  4899999999999988764 478999999


Q ss_pred             HHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          377 TAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       377 ~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      ++++.+.|+++ +....  ..+.+.++.+.+..+.       ....++++.+++ +||++.+..         +..||++
T Consensus       317 ~~~l~~~L~~~-~~~~~~~~~g~g~~~~i~~~~~~-------~~~~~~~~~L~~-~GV~v~~~~---------~~~lR~~  378 (401)
T PRK00854        317 GAYFLEGLRSI-RSNIVREVRGRGLMLAVELEPEA-------GGARQYCEALKE-RGLLAKDTH---------DHTIRLA  378 (401)
T ss_pred             HHHHHHHHHhh-ccCceEEEeccceEEEEEEecCc-------hhHHHHHHHHHH-CCeEEecCC---------CCEEEEe
Confidence            99999999876 32211  1345667766653211       123467777665 599986421         1349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++..+|++||++++++|++++.
T Consensus       379 p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        379 PPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             CCcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-38  Score=320.23  Aligned_cols=365  Identities=18%  Similarity=0.211  Sum_probs=265.9

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+++++++++......+   . .+++...+|+++|++.+
T Consensus        12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~av~~ql~~~~~~~~~---~-~~~~~~~~lae~L~~~~   86 (443)
T PRK07483         12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGH-SHPRVIAAIHAQIDRLAYAHTS---F-FTTEPAEALADRLVAAA   86 (443)
T ss_pred             CCceEEeceEEEEEeCCCCEEEEcCccHhhhccCC-CCHHHHHHHHHHHHhccCcccc---c-cCCHHHHHHHHHHHHhC
Confidence            47889999999999 899999999996   77999 8999999999999985321111   1 24577889999999987


Q ss_pred             C--CCCEEEecccHHHHHhhhhh---h------ccCCcEEEEcCCchhHHHhHhhhcCCeE------------EEe----
Q 011567          168 G--TPDSILYSYGLSTMFSAIPC---F------CKKGDLIVADEGVHWGIQNGLYLSRSTV------------VYF----  220 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~---~------~~~gdiI~~~~~~h~s~~~g~~~s~~~v------------~~~----  220 (483)
                      +  .+.+++.+||++|++.|++.   +      ++|..+|.+...||+.+..++.+++...            ..+    
T Consensus        87 p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~  166 (443)
T PRK07483         87 PAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY  166 (443)
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc
Confidence            5  35667779999999999764   3      3466789999999999877776654211            111    


Q ss_pred             cCCCH--------------HHHHHHHHHhhhhhhhccCccEEEEEecccC-CCCCccC----hHHHHHHHHHcCcEEEEe
Q 011567          221 KHNDM--------------DSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSGQIAP----LDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       221 ~~~d~--------------~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G~i~~----L~~l~~l~~k~~~~li~D  281 (483)
                      .+++.              +++++.+....      +..+++|++||+++ .+|.+.|    |++|+++|++||++||+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~D  240 (443)
T PRK07483        167 AYREQRAGESDEAYGQRLADELEAKILELG------PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILD  240 (443)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhcC------CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEe
Confidence            12222              34454443221      22589999999997 4677666    999999999999999999


Q ss_pred             CccccccccCCCCccc-cccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcC----CceeecCCCcHHHH
Q 011567          282 ESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS----SGYVFSASLPPYLA  353 (483)
Q Consensus       282 Ea~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~----~~~~fs~~~~p~~~  353 (483)
                      |++++  +|++|.+++ +++|+.|   ||+  +++|+++.   +-|.+++++++++.+....    ++.+|  +.||+.|
T Consensus       241 EV~tG--fGRtG~~~a~~~~gv~P---Div--~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~--~gnpl~~  311 (443)
T PRK07483        241 EVMCG--MGRTGTLFACEEDGVAP---DLV--TIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTY--LGHATAC  311 (443)
T ss_pred             cceeC--cccCcHHHHHhhcCCCC---Cee--eehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCC--CCCHHHH
Confidence            99985  577787664 8899988   898  79999971   1233578889988775432    33344  4599999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC-CCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHH
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDI-HGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWAL  427 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~-~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l  427 (483)
                      +++.++|++++++ ++.++++++.++|++.|+++ ..+++.  ....+.++.+.+..+....   +.+......+...++
T Consensus       312 aaa~a~l~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (443)
T PRK07483        312 AAALAVQRVIAED-GLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM  390 (443)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH
Confidence            9999999999875 48999999999999999763 233322  2356778888875432111   112233456777766


Q ss_pred             HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      + +|+++.+........  ....|||+|++.+|++|||++++++++++.+++.
T Consensus       391 ~-~Gll~~~~~~~~~~~--~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        391 A-RGLMVYPMGGTIDGV--RGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             H-CCcEEEecCccccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6 599997642110000  0134999999999999999999999999988754

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=2.9e-37  Score=316.47  Aligned_cols=365  Identities=16%  Similarity=0.191  Sum_probs=262.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+|+++....+.    .+...+...+|+++|++++
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~----~~~~~~~~~~lae~L~~~~   95 (442)
T TIGR00709        21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGH-NHPNMKQKILDYLQSGLPLHT----LDLTTPLKDAFIEALLNII   95 (442)
T ss_pred             CCceEEeccccEEEeCCCCEEEEccccHhhhcCCC-CCHHHHHHHHHHHHhccCccc----cccCcHHHHHHHHHHHHhC
Confidence            36789999999999 899999999997   67999 899999999999997321111    1224578889999999998


Q ss_pred             CC----CCEEEe-cccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC---
Q 011567          168 GT----PDSILY-SYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND---  224 (483)
Q Consensus       168 g~----e~~i~~-~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d---  224 (483)
                      +.    ...+++ +||++|++.|++   .+++|..+|.+...||+.+...+.+++.            .+..+++++   
T Consensus        96 p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (442)
T TIGR00709        96 PKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYR  175 (442)
T ss_pred             CCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCcccc
Confidence            63    245565 899999999976   4578888999999999998777766541            122223222   


Q ss_pred             ----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567          225 ----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG  290 (483)
Q Consensus       225 ----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg  290 (483)
                                .+.+.+.+++.-....+.+..+++|++||+++++|.+.|    |++|+++|++||++||+||++++  +|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG--fG  253 (442)
T TIGR00709       176 CPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAG--FG  253 (442)
T ss_pred             ccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CC
Confidence                      122222222211100112235899999999999887754    99999999999999999999985  56


Q ss_pred             CCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCc
Q 011567          291 RSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENP  367 (483)
Q Consensus       291 ~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~  367 (483)
                      ++|.++ .+++|+.|   ||+  +++|++|.  +-|.++++++ ++.+....++.+|  +.||+.|+++.++|+.++++ 
T Consensus       254 RtG~~~a~~~~gv~P---Div--~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~--~gnpla~aaa~a~L~~i~~~-  324 (442)
T TIGR00709       254 RSGTMFAFEHAGIEP---DFV--VMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTF--RGNQLAMVTGTEALNYWKDD-  324 (442)
T ss_pred             CCCchhHHHHcCCCC---cEE--EEcccccCCcccEEEEEchH-HhccCCCcCCCCC--CcCHHHHHHHHHHHHHHHhc-
Confidence            677655 47899988   898  59999983  1144666777 4544322233334  46999999999999998764 


Q ss_pred             HHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCC------chhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          368 DLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGS------MKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       368 ~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~------~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      ++.+++++++++|++.|+++. .+++.  ....+.++.+.+.++...      ...+......+...+++ +|+++.+..
T Consensus       325 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~  403 (442)
T TIGR00709       325 NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETGG  403 (442)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeecC
Confidence            489999999999999998652 23322  235677888888543211      11122345667776665 599987532


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ..       ...||+.|+..+|++|++++++++++++.+++.
T Consensus       404 ~~-------~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~  438 (442)
T TIGR00709       404 RE-------GEVFRLLCPITIDQEECEEGISRFKQAVEEALA  438 (442)
T ss_pred             CC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            11       134999999999999999999999999988754

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=8.5e-38  Score=316.16  Aligned_cols=338  Identities=18%  Similarity=0.248  Sum_probs=263.6

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| +||++||||+++.   +||| +||+|.+|+.++++++...  + .  ....+...++++.+++..
T Consensus        11 ~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~--~-~--~~~~~~~~~la~~l~~~~   84 (377)
T PRK02936         11 FPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHV--S-N--LFTNSLQEEVASLLAENS   84 (377)
T ss_pred             CCceEEEeecCEEEeCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccc--c-c--ccCCHHHHHHHHHHHhcC
Confidence            35678999999999 8999999999985   9999 9999999999999985321  1 1  224577888888888887


Q ss_pred             CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHHHHHHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDSLRNTL  232 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~Le~~l  232 (483)
                      +.+.+++++||++|+..|++.   +++++++|..+..+|+++..++.+++.            .+..++++|++++++.+
T Consensus        85 ~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~  164 (377)
T PRK02936         85 AGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM  164 (377)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhc
Confidence            777788889999999999885   357778999999999998887776553            23567889999998877


Q ss_pred             HHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCce
Q 011567          233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKI  307 (483)
Q Consensus       233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~  307 (483)
                      ..          ++++|++|++++++|...+    |++|+++|++||+++|+||+|++  +|++|+++. +++++.|   
T Consensus       165 ~~----------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g--~g~~g~~~~~~~~~~~~---  229 (377)
T PRK02936        165 NE----------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTG--IGRTGTLFAYEQFGLDP---  229 (377)
T ss_pred             cC----------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCchhhHHHhhCCCC---
Confidence            42          3789999999998877654    99999999999999999999974  677777653 6678776   


Q ss_pred             eEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          308 DIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       308 Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      |++  |+||++++  ++|++++++++++.+.......+|  +.||+.++++.++++.+... +.+++++++.+++++.|+
T Consensus       230 di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~L~  304 (377)
T PRK02936        230 DIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTF--GGNPLAMAAAKEVLQVIKQP-SFLEEVQEKGEYFLQKLQ  304 (377)
T ss_pred             cEE--EEcccccCCCccEEEEEcHHHHhhccCCCCCCCC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence            765  79999983  358899999999987654333344  46899999999999988543 478889999999999887


Q ss_pred             cC-CCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHH
Q 011567          386 DI-HGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA  462 (483)
Q Consensus       386 ~~-~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~e  462 (483)
                      +. ++++...  .+.+.++++.+.+.          ...+...+ .++||++.+..         .+.||++++..+|++
T Consensus       305 ~~~~~~~~~~~v~~~g~~~~i~~~~~----------~~~~~~~l-~~~gv~v~~~g---------~~~lRi~p~~~~~~~  364 (377)
T PRK02936        305 EELEHLECVKNIRGKGLMIGIECTEE----------VAPVIEQL-REEGLLVLSAG---------PNVIRLLPPLVVTKE  364 (377)
T ss_pred             HHHhhCCcEEeEeecceEEEEEecch----------HHHHHHHH-HHCCeEEecCC---------CCEEEEECCcccCHH
Confidence            63 2333221  23567788877421          33566654 45699987642         134999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          463 DLVKACESLKRIS  475 (483)
Q Consensus       463 di~~~~~~l~~~~  475 (483)
                      ++++++++|++++
T Consensus       365 ~i~~~i~~l~~~~  377 (377)
T PRK02936        365 ELDQAVYLLKKVL  377 (377)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=1.7e-37  Score=315.68  Aligned_cols=350  Identities=17%  Similarity=0.205  Sum_probs=260.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+++++++.+....    ...+.+...+|.++|++.+
T Consensus        17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~----~~~~~~~~~~lae~l~~~~   91 (412)
T TIGR02407        17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGH-NNPKLKQALIDYLADDGIIHS----LDMATEAKREFLETFNEII   91 (412)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcccchhhccCCC-CCHHHHHHHHHHHhhccceec----cccCcHHHHHHHHHHHHhc
Confidence            46789999999999 899999999987   67999 899999999999997544221    1123577789999999974


Q ss_pred             --C--CC-CEEEe-cccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecC----
Q 011567          168 --G--TP-DSILY-SYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKH----  222 (483)
Q Consensus       168 --g--~e-~~i~~-~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~----  222 (483)
                        +  .. ..+++ +||++|++.|++.   +++|..+|.+..+||+.+..++.+++.            .+..++.    
T Consensus        92 ~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~  171 (412)
T TIGR02407        92 LKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYL  171 (412)
T ss_pred             cCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCcc
Confidence              2  22 35565 8999999999764   567888999999999998877766542            1233343    


Q ss_pred             ----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          223 ----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       223 ----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                          ++++.+++.+++...    .+..+++|++||+++++|.+.|    |++|+++|++||++||+||++++  +|++|.
T Consensus       172 ~~~~~~~~~l~~~~~~~~~----~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--~GRtG~  245 (412)
T TIGR02407       172 GGDVDTIAYFEKLLEDSSS----GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAG--CGRTGT  245 (412)
T ss_pred             ccchhHHHHHHHHHHhccC----CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccch
Confidence                346667777754321    1124789999999999888654    99999999999999999999984  678887


Q ss_pred             ccc-cccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-HhcCcHH
Q 011567          295 GLT-EHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LEENPDL  369 (483)
Q Consensus       295 g~~-~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~~~~~~  369 (483)
                      ++. +++++.|   ||+  +++|++|+.|   |++++++++ +.+....++.+|  +.+|+.++++.++++. +++ +++
T Consensus       246 ~~a~~~~~v~P---Di~--~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~--~gnpl~~aaa~a~l~~~i~~-~~l  316 (412)
T TIGR02407       246 FFSFEPAGIEP---DIV--CLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTF--RGNNLAFVTATAALEYYWSD-DAF  316 (412)
T ss_pred             hHHhcccCCCC---CEE--EechhccCCccceeEEEEchhh-hccCCCccCCCC--CccHHHHHHHHHHHHHHhcc-cHH
Confidence            654 7889988   887  6899998533   667777776 544322333344  4589999999999996 554 568


Q ss_pred             HHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC
Q 011567          370 ITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC  445 (483)
Q Consensus       370 ~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~  445 (483)
                      .++++++.++++++|+.+    +++.......+.++++.+.+        .....++...+++ +||++.+....     
T Consensus       317 ~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~--------~~~~~~~~~~~~~-~Gv~v~~~~~~-----  382 (412)
T TIGR02407       317 EKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGD--------GDLAGKIAKAAFE-NGLIIETSGPN-----  382 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecC--------hHHHHHHHHHHHH-CCCEEeccCCC-----
Confidence            899999999999888653    22223334567888888843        1234567776665 59999754211     


Q ss_pred             CCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          446 RLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       446 ~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                        .+.||++|+..+|++|++++++++++++++
T Consensus       383 --~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       383 --DEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             --CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence              134999999999999999999999998753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=316.76  Aligned_cols=366  Identities=16%  Similarity=0.176  Sum_probs=266.5

Q ss_pred             CccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567           94 PVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT  169 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~  169 (483)
                      |++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+|+++......    ....++...+|.++|++.++.
T Consensus        15 p~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~lae~L~~~~p~   89 (447)
T PRK06917         15 PVISHGKGVYLYDQNGNKYFDGSSGAVTAGIGH-GVKEIADAIKEQAEEVSFVYR----SQFTSEPAEKLAKKLSDLSPG   89 (447)
T ss_pred             CeEEeeeeeEEEeCCCCEEEECchhHHhccCCC-CCHHHHHHHHHHHhhCcCccc----cccCCHHHHHHHHHHHHhCCC
Confidence            368999999999 899999999987   67999 899999999999998532211    111357788999999999864


Q ss_pred             --CCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCeE------------EEe--c---
Q 011567          170 --PDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRSTV------------VYF--K---  221 (483)
Q Consensus       170 --e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~v------------~~~--~---  221 (483)
                        +.+++.+||++|++.|++..         ++|..+|.+...||+.+..++.+++...            ..+  +   
T Consensus        90 ~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~  169 (447)
T PRK06917         90 DLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCY  169 (447)
T ss_pred             CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccc
Confidence              34566699999999998765         4567789999999998877766554211            111  1   


Q ss_pred             ---C---------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CCCccC----hHHHHHHHHHcCcEEEEeCcc
Q 011567          222 ---H---------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAP----LDELIRLKEKYRFRVFLDESN  284 (483)
Q Consensus       222 ---~---------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G~i~~----L~~l~~l~~k~~~~li~DEa~  284 (483)
                         .         +|.+.+++.+++...      ..+++|++||++++ +|.+.|    |++|+++|++||+++|+||++
T Consensus       170 ~~~~~~~~~~~~~~~~~~le~~i~~~~~------~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~  243 (447)
T PRK06917        170 RCPVQKVYPTCQLACATELETAIERIGA------EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVM  243 (447)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHhcCC------CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechh
Confidence               0         123455555554321      25899999999985 455555    899999999999999999999


Q ss_pred             ccccccCCCCccc-cccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCcee--ecCCCcHHHHHHHHH
Q 011567          285 SFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYV--FSASLPPYLASAAIT  358 (483)
Q Consensus       285 s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~--fs~~~~p~~~aaa~~  358 (483)
                      ++  +|++|.++. +++++.|   ||+  +++|++|.   +.|.+++++++++.+......+.  .+.+.||+.++++++
T Consensus       244 tG--fGRtG~~~a~~~~gv~P---Di~--~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a  316 (447)
T PRK06917        244 TG--LGRTGAMFAMEHWGVEP---DIM--TLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALA  316 (447)
T ss_pred             hC--cCcccchhhHHhcCCCC---CEE--EeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHH
Confidence            84  678888764 8899988   887  79999972   23556788999988764322211  123469999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCC---chhhHHHHHHHHHHHHHhCCE
Q 011567          359 AIDVLEENPDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGS---MKNDLQLLEDIADWALKEDGV  432 (483)
Q Consensus       359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~~l~~~Gv  432 (483)
                      +|+.+++. ++.++++++.++|++.|+++. .+++.  ....+.++.+.+..+...   ...+......+...+++ +||
T Consensus       317 ~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv  394 (447)
T PRK06917        317 VLEYMEKH-NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGL  394 (447)
T ss_pred             HHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCc
Confidence            99999765 489999999999999998753 23222  234677888887432211   11122446677777666 599


Q ss_pred             EEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          433 FVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       433 ~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ++.+........  ....+|++|+..+|++|||+++++++++++++..+
T Consensus       395 l~~~~~~~~~g~--~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~  441 (447)
T PRK06917        395 LLYPAVAGQDGK--EGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQK  441 (447)
T ss_pred             EEEecccccCCC--CCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            997642110000  01349999999999999999999999999988654

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=4e-37  Score=315.23  Aligned_cols=355  Identities=22%  Similarity=0.259  Sum_probs=270.3

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|+++++++|.++| .||++||||+++   +.+|| +||+|.+++.+++.+....   +.. +++.+.+.++++.|+++
T Consensus        17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~-~~~~~~~~~l~~~l~~~   91 (413)
T cd00610          17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGH-NHPEVVEALKEQLAKLTHF---SLG-FFYNEPAVELAELLLAL   91 (413)
T ss_pred             CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCC-CCHHHHHHHHHHHHhCcCc---cCc-ccCCHHHHHHHHHHHHh
Confidence            357889999999999 799999999995   46888 8999999999999764221   111 14678999999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCC------
Q 011567          167 LG--TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHN------  223 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~------  223 (483)
                      +|  .+++++++||++|+..+++.+   +++.++|+.+..+|++...++..++.            ++..++++      
T Consensus        92 ~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (413)
T cd00610          92 TPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPP  171 (413)
T ss_pred             CCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccch
Confidence            99  677888899999999998865   56677888899999988877776643            36678888      


Q ss_pred             -----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          224 -----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                           |+++|++.+++...       ++++|+++|+++++|.+.|    +++|+++|++||+++|+||+|++  +|++|.
T Consensus       172 ~~~~~d~~~l~~~l~~~~~-------~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g--~g~~g~  242 (413)
T cd00610         172 AELADDLEALEEALEEHPE-------EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG--FGRTGK  242 (413)
T ss_pred             hhHHHHHHHHHHHHhcCCC-------CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCcc
Confidence                 78888887765322       4789999999999999887    99999999999999999999985  455665


Q ss_pred             cc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHH
Q 011567          295 GL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLIT  371 (483)
Q Consensus       295 g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~  371 (483)
                      +. .+++++.|   |++  |+||+++.  +.|++++++++++.+......+.++.+.+|+.++++.++++.+++ +++.+
T Consensus       243 ~~~~~~~~~~~---d~~--t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~-~~~~~  316 (413)
T cd00610         243 MFAFEHFGVEP---DIV--TLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE-EGLLE  316 (413)
T ss_pred             hhhHhhcCCCC---CeE--EEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-ccHHH
Confidence            53 46677766   765  89999984  236778899999886212222233445689999999999999876 45889


Q ss_pred             HHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCC
Q 011567          372 KLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP  448 (483)
Q Consensus       372 ~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~  448 (483)
                      +++++.+++++.|+++.   +......+.++++++.+.+.......+......+++.+++ +||++.+..         +
T Consensus       317 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~---------~  386 (413)
T cd00610         317 NAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSG---------G  386 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecC---------C
Confidence            99999999999987652   2222223467888888854321111122345567776555 599998753         1


Q ss_pred             CceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          449 VGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       449 ~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+|++++..+|++|++++++++++++
T Consensus       387 ~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         387 NVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            349999999999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=5e-37  Score=313.06  Aligned_cols=349  Identities=22%  Similarity=0.273  Sum_probs=270.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++.+++|.++| .||++||||+++   ..+|| .||+|.+++.+++++++..+   +.+  ..+.+.++++.+++++
T Consensus        13 ~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~   86 (400)
T PTZ00125         13 LPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGH-CHPKILAALINQAQKLTLTS---RAF--YNDVLGLAEKYITDLF   86 (400)
T ss_pred             CCccEEeeecCEEEeCCCCEEEEcccCHhhccCCc-CCHHHHHHHHHHHHhccccc---ccc--cCHHHHHHHHHHHhCC
Confidence            36678999999999 799999999986   45788 89999999999999876533   222  2468899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND  224 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d  224 (483)
                      +.+.+++++||++|++.+++...           ++.++|.++..+|+.+..++..++.            .+..++++|
T Consensus        87 ~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  166 (400)
T PTZ00125         87 GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYND  166 (400)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCC
Confidence            99889999999999999998663           3456889999999998887765542            235677889


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~  299 (483)
                      +++||+.++.  .       .+++|++||+++++|.+.|    +++|+++|++||+++|+||+|++  +|++|+++. ++
T Consensus       167 ~~~le~~l~~--~-------~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g--~g~~G~~~~~~~  235 (400)
T PTZ00125        167 VEALEKLLQD--P-------NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHDH  235 (400)
T ss_pred             HHHHHHHhCC--C-------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhhHHHh
Confidence            9999988851  1       3789999999999999988    99999999999999999999974  577776543 45


Q ss_pred             cCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      +++.|   |++  +++|+++..   -|++++++++++.+.......+|  +.+|+.++++.++++.+++. .+.++++++
T Consensus       236 ~~~~p---d~~--~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~~~l~~i~~~-~~~~~~~~~  307 (400)
T PTZ00125        236 EGVKP---DIV--LLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTY--GGNPLACAVAVEALEVLKEE-KLAENAQRL  307 (400)
T ss_pred             cCCCC---CEE--EEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCC--CcCHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            67766   777  588999742   26788999999887654333344  35889999999999988754 377888888


Q ss_pred             HHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEE
Q 011567          377 TAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL  453 (483)
Q Consensus       377 ~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi  453 (483)
                      .+++++.|+++.   ++.....+.+.+..+.+..+.      .....++++.+++ +||++.+..         +..|||
T Consensus       308 ~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~------~~~~~~~~~~l~~-~Gv~v~~~~---------~~~lRi  371 (400)
T PTZ00125        308 GEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSD------GVNAWDLCLKLKE-NGLLAKPTH---------DNIIRF  371 (400)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCc------chHHHHHHHHHHH-CCeEEeecC---------CCEEEE
Confidence            898888887641   221111345677777774321      1234567777664 599997642         134999


Q ss_pred             EccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          454 FVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       454 ~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +++..+|++++++++++|+++++++-.+
T Consensus       372 ~~~~~~~~~~i~~~l~~l~~~l~~~~~~  399 (400)
T PTZ00125        372 APPLVITKEQLDQALEIIKKVLKSFDSN  399 (400)
T ss_pred             ECCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999887443

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-36  Score=310.47  Aligned_cols=355  Identities=18%  Similarity=0.220  Sum_probs=264.1

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.+++++.....  .  .....+...++.++|+++++
T Consensus        23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~--~--~~~~~~~~~~la~~l~~~~p   97 (421)
T PRK06777         23 DFYAERAENATLWDVEGREYIDFAAGIAVLNTGH-RHPKVVAAVRQQLDQFTHTA--Y--QIVPYASYVTLAERINALAP   97 (421)
T ss_pred             CeeEEeeecCEEEeCCCCEEEEcccCHHhhccCC-CCHHHHHHHHHHHhhccccc--c--cccCChHHHHHHHHHHHhCC
Confidence            6789999999999 899999999987   67999 89999999999999853211  1  11245677899999999876


Q ss_pred             ---CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCC------
Q 011567          169 ---TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHN------  223 (483)
Q Consensus       169 ---~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~------  223 (483)
                         .+.+++++||++|++.|++   .+++|..+|.+...||+.+..++.+++..             +..++++      
T Consensus        98 ~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  177 (421)
T PRK06777         98 IDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGV  177 (421)
T ss_pred             CCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCc
Confidence               3567788999999999975   46788889999999999988777665421             1111222      


Q ss_pred             ----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567          224 ----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       224 ----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g  295 (483)
                          +++++++.+++..     .+..+++|++||+++++|.. .|   |++|+++|++||++||+||+|++  +|++|.+
T Consensus       178 ~~~~~~~~l~~~~~~~~-----~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg--~gr~g~~  250 (421)
T PRK06777        178 SVEEALSSVERLFKADI-----APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTG--FARTGKL  250 (421)
T ss_pred             CHHHHHHHHHHHHHhcc-----CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CccCCch
Confidence                2455666665311     12248999999999998864 44   99999999999999999999984  5777765


Q ss_pred             c-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHH
Q 011567          296 L-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITK  372 (483)
Q Consensus       296 ~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~  372 (483)
                      + .+++++.|   |++  +++|++++  +.|++++++++++.+.......+|  +.||+.++++.++|+.+++ +++.++
T Consensus       251 ~~~~~~~~~p---Div--~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~--~~~p~~~aaa~a~L~~~~~-~~l~~~  322 (421)
T PRK06777        251 FAMEYYDVKP---DLI--TMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTY--AGNPLAVAAALAVLDVIAE-EKLCQR  322 (421)
T ss_pred             hhhhhcCCCC---CEE--eeehhhcCCCceEEEEEcHHHHhccCCCCCCCCC--CcCHHHHHHHHHHHHHHHh-ccHHHH
Confidence            4 47888877   776  79999982  126688899999887654444444  4599999999999998876 468999


Q ss_pred             HHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          373 LKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       373 l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      ++++.+++++.|+++.   +......+.+.++.+.+..+... ..+......+...+++ +||++.+....       .+
T Consensus       323 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~-~Gv~i~~~~~~-------g~  393 (421)
T PRK06777        323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTG-KPSPEFTRQYQRQALE-EGLLLLSCGVH-------GN  393 (421)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccC-CccHHHHHHHHHHHHh-CCeEEeecCCC-------CC
Confidence            9999999999998751   11112245677777766432111 1123345566666555 69999765321       13


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+||+|++.+|++++++++++|++++.
T Consensus       394 ~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        394 VIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            499999999999999999999998864

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=9.3e-37  Score=309.07  Aligned_cols=349  Identities=19%  Similarity=0.234  Sum_probs=265.7

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| +|||+||||.++   ..+|| +||+|.+|+.+|+++... . ++ .+  ..+...+|.++|++..
T Consensus        22 ~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~-~-~~-~~--~~~~~~~la~~L~~~~   95 (408)
T PRK04612         22 RQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGH-NDPDLVAALTEQAGKLWH-T-SN-VF--YSAPPLKLAEELVTAS   95 (408)
T ss_pred             CCceEEEeeeCEEEECCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhccc-c-cc-cc--CCHHHHHHHHHHHhhC
Confidence            46778999999999 899999999987   67999 899999999999997422 1 11 11  3467789999999987


Q ss_pred             CC-CCEEEecccHHHHHhhhhhhc------c----CCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCC
Q 011567          168 GT-PDSILYSYGLSTMFSAIPCFC------K----KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHND  224 (483)
Q Consensus       168 g~-e~~i~~~sG~~a~~~ai~~~~------~----~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d  224 (483)
                      +. +.+++.+||++|++.|++...      +    |..+|.+..+||+.+..++..++.            .+..++++|
T Consensus        96 ~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d  175 (408)
T PRK04612         96 RFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFND  175 (408)
T ss_pred             CCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCC
Confidence            54 456666999999999986532      2    345888999999988777665432            234567788


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~  299 (483)
                      .+.+++.++.  .       ++++|++||+++++|.+.|    +++|+++|++||+++|+||+|++  +|++|.++. ++
T Consensus       176 ~~~l~~~~~~--~-------~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~a~~~  244 (408)
T PRK04612        176 VEALEAAMAG--G-------DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCG--MGRTGTLFAHWQ  244 (408)
T ss_pred             HHHHHHhhCC--C-------CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCCchhhhhh
Confidence            9999887742  1       4899999999998777765    89999999999999999999984  677776543 45


Q ss_pred             cCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      +++.|   |++  |++|++|+  +-|++++++++++.+....++.+|+  .+|+.++++.++|+.+++. ++.++++++.
T Consensus       245 ~~~~p---di~--t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~--~~p~~~aaa~a~L~~~~~~-~l~~~~~~~g  316 (408)
T PRK04612        245 EQVTP---DIV--TLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFG--GNPLAAAVARVALRKLASP-QIAANVARQS  316 (408)
T ss_pred             cCCCC---CEE--EEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCC--CCHHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence            56665   776  89999982  1255677788888876555555554  5899999999999999864 6999999999


Q ss_pred             HHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          378 AILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       378 ~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      +++++.|+++. .+++.  ..+.+.++.+.+...      ......++++.++ ++|+++.+..         +..||+.
T Consensus       317 ~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~------~~~~a~~i~~~l~-~~Gvlv~~~g---------~~~lRl~  380 (408)
T PRK04612        317 AALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPA------HAGQAGAILDLAA-EHGLLLLQAG---------PDVLRFV  380 (408)
T ss_pred             HHHHHHHHHHHhhCCCeeeeeccceEEEEEecCc------hhhHHHHHHHHHH-HCCeEEeeCC---------CCEEEEc
Confidence            99999998752 22222  234677888887421      1123456677655 4699986532         1349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          455 VSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      |+..+|++||+++++++++++.++.+.
T Consensus       381 Ppl~it~eeid~~l~~l~~~l~~~~~~  407 (408)
T PRK04612        381 PALNLTDAELADGLARLRLALADYVAQ  407 (408)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999887654

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=2.4e-37  Score=314.42  Aligned_cols=349  Identities=16%  Similarity=0.185  Sum_probs=258.6

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .||++||||.++   ..+|| +||+|.+|+.++++++.....    ...+++...+|.++|++.+
T Consensus        22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~----~~~~~~~~~~lae~L~~~~   96 (422)
T PRK05630         22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGH-GHPRLKAAAHKQIDTMSHVMF----GGLTHEPAIKLTRKLLNLT   96 (422)
T ss_pred             CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCC-CCHHHHHHHHHHHHhCCCccc----CCcCCHHHHHHHHHHHhhC
Confidence            46789999999999 899999999987   67999 899999999999998643111    1124577899999999998


Q ss_pred             C--CCCEEEecccHHHHHhhhhhh---c------cCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCC
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCF---C------KKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHN  223 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~---~------~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~  223 (483)
                      +  .+.+++.+||++|++.|++..   +      +|..+|.+...||+.+..++.+++..             ...++.+
T Consensus        97 p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~  176 (422)
T PRK05630         97 DNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP  176 (422)
T ss_pred             CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC
Confidence            5  456777799999999998653   2      35678999999999887776654421             1111111


Q ss_pred             -----CHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          224 -----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                           +.++++..++......   ..++++|++||+ ++.+|.+.|    +++|+++|++||++||+||++++  +|++|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~---~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG--~GrtG  251 (422)
T PRK05630        177 PVRGSSPQEISEYLRSLELLI---DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATG--FGRTG  251 (422)
T ss_pred             cccCCChHHHHHHHHHHHHHH---hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeC--CCcCc
Confidence                 1222322222211100   014899999996 888787665    89999999999999999999964  48888


Q ss_pred             Cccc-cccCCCCCceeEEEcccccccc---CCCceeeccHHHHHHHHhc------CCceeecCCCcHHHHHHHHHHHHHH
Q 011567          294 RGLT-EHCGVPVDKIDIVTAAMGHALA---TEGGFCTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       294 ~g~~-~~~~v~~~~~Di~~~s~~K~lg---~~GG~i~~~~~~~~~~~~~------~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      +++. +++|+.|   ||+  +++|+++   .++|++++++++++.+...      .++.+|  +.||+.|+++.++|+++
T Consensus       252 ~~~a~~~~gv~P---Di~--t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~--~g~Pla~aaa~aaL~~l  324 (422)
T PRK05630        252 ELFATLAAGVTP---DIM--CVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTF--MANPLACAVAHASLEII  324 (422)
T ss_pred             hhhHHHhcCCCC---Cee--eeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCC--cCCHHHHHHHHHHHHHH
Confidence            8765 7899988   898  8999995   2456678899999887532      123344  46999999999999999


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM  441 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~  441 (483)
                      +++ +..++++++.++|++.|+.+...+..+  ...+.++.+.+..+.        ....+...+++ +|+++.+..   
T Consensus       325 ~~~-~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~-~Gl~~~~~g---  391 (422)
T PRK05630        325 ETG-MWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVD-HGVWLRPFG---  391 (422)
T ss_pred             HhC-cHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHH-CCeEEEecC---
Confidence            875 478899999999999887653322221  346888999885321        12356666665 599987532   


Q ss_pred             cccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          442 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       442 ~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                             ..+|+.|++.+|++|+|++++++++++++
T Consensus       392 -------~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        392 -------RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             -------CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence                   23899999999999999999999998854

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=7e-37  Score=339.73  Aligned_cols=359  Identities=19%  Similarity=0.219  Sum_probs=269.8

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      ..|+++++++|.|++ .|||+||||.++ ..+|| +||+|.+|+.+|+.+....   ++ +  ..+.+.+|+++|+++++
T Consensus       566 ~~p~~i~~g~G~~l~D~dG~~ylD~~~~~~~lGh-~hp~v~~Ai~~q~~~l~~~---~~-~--~~~~~~elae~L~~~~p  638 (972)
T PRK06149        566 ADPPQIERGWRHHLFDMAGRSYLDMVNNVTVLGH-GHPRLAAAAARQWSLLNTN---SR-F--HYAAVAEFSERLAALAP  638 (972)
T ss_pred             cCCCeEEEeeeeEEEeCCCCEEEECCCCccccCC-CCHHHHHHHHHHHHhcccc---cc-c--cCHHHHHHHHHHHHhCC
Confidence            346789999999999 899999999987 45888 8999999999999875432   12 1  35788999999999984


Q ss_pred             --CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEE----------e
Q 011567          169 --TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVY----------F  220 (483)
Q Consensus       169 --~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~----------~  220 (483)
                        .+.+++++||++|++.|++   ++++|.++|.++..||+.+..+..+++..             +..          +
T Consensus       639 ~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~  718 (972)
T PRK06149        639 DGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRF  718 (972)
T ss_pred             CCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcC
Confidence              5678888999999999987   77899999999999998776554443210             111          2


Q ss_pred             cCCC-----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccC
Q 011567          221 KHND-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGR  291 (483)
Q Consensus       221 ~~~d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~  291 (483)
                      +++|     .+++++.++....    .+..+++|++||+++++|.+.|    |++|+++|++||+++|+||++++  +|+
T Consensus       719 ~~~~~~~~~~~~~~~~l~~~~~----~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tG--fGR  792 (972)
T PRK06149        719 RGADSAADYVRDVVAQLEELDA----SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG--YGR  792 (972)
T ss_pred             CCcccHHHHHHHHHHHHHHHhh----cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhc--CCc
Confidence            2233     3455555543221    2235899999999999999988    99999999999999999999954  355


Q ss_pred             CCC-c-cccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec-CCCcHHHHHHHHHHHHHHhcC
Q 011567          292 SGR-G-LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS-ASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       292 ~G~-g-~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs-~~~~p~~~aaa~~al~~l~~~  366 (483)
                      +|. + ..+++|+.|   ||+  +++|++|.  +.|++++++++++.+...  ++.|+ .+.||+.|++++++|++++++
T Consensus       793 tG~~~~a~e~~gv~P---Div--t~gK~lg~G~Pl~av~~~~~i~~~~~~~--~~~~sT~~gnP~~~aaala~L~~i~~e  865 (972)
T PRK06149        793 LGHYFWGFEQQGVVP---DII--TMAKGMGNGHPLGAVITRREIAEALEAE--GYFFSSTGGSPVSCRIGMAVLDVLREE  865 (972)
T ss_pred             cCccchhhhhcCCCC---CEE--EecccccCCeeeEEEEEcHHHHhhhccC--CcccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            564 2 358899988   898  89999982  235678899999987642  23333 467999999999999999875


Q ss_pred             cHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567          367 PDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD  443 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~  443 (483)
                       ++.+++++++++|++.|+++. .+++.  ..+.+.++.+.+..+......+......++..+++ +||++.+....   
T Consensus       866 -~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~g~~---  940 (972)
T PRK06149        866 -KLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPTGDH---  940 (972)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeecCCC---
Confidence             489999999999999997752 12322  23467788888743222222233446678887666 59999764321   


Q ss_pred             cCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          444 KCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       444 ~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                          ...|||.|+..+|++|++++++++++++.+.
T Consensus       941 ----~~vl~~~Ppl~it~~~id~~~~~l~~~l~~~  971 (972)
T PRK06149        941 ----LNILKIKPPLCLDRESADFFVDMLDRVLTEG  971 (972)
T ss_pred             ----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhh
Confidence                1239999999999999999999999998754

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=5.9e-37  Score=308.82  Aligned_cols=339  Identities=20%  Similarity=0.242  Sum_probs=261.2

Q ss_pred             cccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567           96 LESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD  171 (483)
Q Consensus        96 i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~  171 (483)
                      +++++|.|+| .|||+||||.++   ..+|| +||++.+|+.+++++....+     ....++...+|.++|++..+.+.
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~   74 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGH-GDPDWVKAVAEQAGTLAHVS-----NVYHTIPQVELAKRLVASSFADR   74 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCC-CCHHHHHHHHHHHHhcCCcc-----ccccCHHHHHHHHHHHhcCCCCe
Confidence            4689999999 899999999987   57999 89999999999999853321     11235778899999999887777


Q ss_pred             EEEecccHHHHHhhhhhh---cc-------------CCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCC
Q 011567          172 SILYSYGLSTMFSAIPCF---CK-------------KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHN  223 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~---~~-------------~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~  223 (483)
                      +++.+||++|++.|++..   ++             +.++|.+...||+.+...+.+++.            .+..+++|
T Consensus        75 v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  154 (382)
T PLN00144         75 VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG  154 (382)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC
Confidence            778899999999998643   32             356889999999988777665542            23567788


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-c
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-E  298 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~  298 (483)
                      |++.|++.++.  .       ..++|++||+++++|.+.+    +++|+++|++||+++|+||++++  +|++|.++. +
T Consensus       155 d~~~l~~~~~~--~-------~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg--~gr~g~~~~~~  223 (382)
T PLN00144        155 NLEAARKLIQK--G-------KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG--LGRTGYLWAHE  223 (382)
T ss_pred             CHHHHHHhcCC--C-------CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchHhhhh
Confidence            99999987742  1       3789999999888666554    89999999999999999999985  677776544 5


Q ss_pred             ccCCCCCceeEEEcccccccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          299 HCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      ++++.|   |++  ||+|+++  .+.|++++++++++.+....+..+|  +.+|+.++++.++|+++++ +++.++++++
T Consensus       224 ~~~~~P---Di~--t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~--~~~pl~~aaa~a~l~~i~~-~~~~~~~~~~  295 (382)
T PLN00144        224 AYGVEP---DIM--TLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTF--AGGPLVCNAALAVLDKISK-PGFLASVAKK  295 (382)
T ss_pred             hcCCCC---CEE--EecccccCCcceEEEEEcHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHHHHhh-chHHHHHHHH
Confidence            789887   765  8999996  3347788999999887654444444  4589999999999999976 4588899999


Q ss_pred             HHHHHHhhccC-CCcee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEE
Q 011567          377 TAILRTGLSDI-HGLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL  453 (483)
Q Consensus       377 ~~~l~~~L~~~-~~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi  453 (483)
                      ++++++.|.++ ..++.  .....+.++++.+..+          ...+...+++ +||++.+...        .+.||+
T Consensus       296 g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~~----------~~~~~~~~~~-~Gv~i~~~~~--------~~~lrl  356 (382)
T PLN00144        296 GEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVP----------AGPLVDACRD-SGLLVLTAGK--------GDVVRL  356 (382)
T ss_pred             HHHHHHHHHHHHhhCCCceeeecCceEEEEEecCc----------cHHHHHHHHH-CCeEEeecCC--------CCEEEE
Confidence            99888877653 22221  1124678888888211          2356776655 6999976521        145999


Q ss_pred             EccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          454 FVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       454 ~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +|+..+|++|+++++++|++++.++
T Consensus       357 ~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        357 VPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             eCCCccCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998653

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=5.5e-37  Score=312.80  Aligned_cols=344  Identities=17%  Similarity=0.209  Sum_probs=257.4

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      ++.+++++|.++| .||++||||+++   .+||| +||++.+++.+++++++....+    +-+.+...++.++|++.++
T Consensus        28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~  102 (427)
T TIGR00508        28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGY-NHPRLNAAAQKQIDKMSHVMFG----GFTHKPAIELCQKLVKMTP  102 (427)
T ss_pred             CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCC-CCHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHhhCC
Confidence            4568999999999 799999999997   58999 8999999999999986542211    1135678899999999986


Q ss_pred             C--CCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe---------------EEEe--
Q 011567          169 T--PDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST---------------VVYF--  220 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~---------------v~~~--  220 (483)
                      .  +.+++.+||++|++.|++...         +|.++|.+...||+.+...+.+++..               ...+  
T Consensus       103 ~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~  182 (427)
T TIGR00508       103 NALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQ  182 (427)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCC
Confidence            4  466777999999999987432         36679999999998876555543321               0111  


Q ss_pred             -------cCCCHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          221 -------KHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       221 -------~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                             .++|++++++++++...       .+++|++||+ ++.+|...|    |++|+++|++||++||+||+++ | 
T Consensus       183 ~~~~~~~~~~~~~~l~~~l~~~~~-------~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G-  253 (427)
T TIGR00508       183 NRFDEEWNEEAITPLAKLMELHSD-------EIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIAT-G-  253 (427)
T ss_pred             ccccchhHHHHHHHHHHHHHhcCC-------cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-
Confidence                   12256677777764322       4899999998 555555443    9999999999999999999995 4 


Q ss_pred             ccCCCCcc-ccccCCCCCceeEEEccccccccCCCce-----eeccHHHHHHHHhcC-Cceee--cCCCcHHHHHHHHHH
Q 011567          289 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF-----CTGSARVVDHQRLSS-SGYVF--SASLPPYLASAAITA  359 (483)
Q Consensus       289 lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~~-~~~~f--s~~~~p~~~aaa~~a  359 (483)
                      +|++|+++ .+++++.|   ||+  +++|+++  ||+     +++++++++.++... ..+.+  +...||+.++++.++
T Consensus       254 ~Gr~G~~~~~~~~~v~p---Di~--~~gK~l~--gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~  326 (427)
T TIGR00508       254 FGRTGKLFACEHAGVVP---DIL--CVGKALT--GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEAS  326 (427)
T ss_pred             CCcCCccchhhhcCCCC---CEE--Eechhhh--cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHH
Confidence            68888875 57899987   887  5999996  664     467788888886432 11112  224689999999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee
Q 011567          360 IDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS  437 (483)
Q Consensus       360 l~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~  437 (483)
                      |+++++.+ ..++++++.++|++.|+++...+..  ....++++.+.+.++.        ....+..++++ +||++.+.
T Consensus       327 l~~l~~~~-~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~-~Gv~~~~~  396 (427)
T TIGR00508       327 LAILLEGE-WQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFVE-QGVWIRPF  396 (427)
T ss_pred             HHHHHhCC-HHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHHH-CCeEEEec
Confidence            99998754 7899999999999999876322211  1345888888885321        12456776665 59999754


Q ss_pred             cccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          438 KRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       438 ~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .          ..+|++|+..+|++|||++++++++++++
T Consensus       397 ~----------~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       397 G----------KLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             C----------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            2          23899999999999999999999998864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-37  Score=291.94  Aligned_cols=353  Identities=16%  Similarity=0.108  Sum_probs=265.1

Q ss_pred             ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh
Q 011567           90 RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK  165 (483)
Q Consensus        90 ~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~  165 (483)
                      +..|++|.+++|.|++ .+||+|||+.++   ..+|| +||+|.+++.+|+.+.-..+.    .| ..++..++++.|+.
T Consensus        30 ~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGH-chP~v~~a~~kQl~~l~H~t~----~~-~~~pi~~~Ae~L~s  103 (442)
T KOG1404|consen   30 YKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGH-CHPDVVAAAVKQLKKLYHTTS----GY-LNPPIHDLAEALVS  103 (442)
T ss_pred             ccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCC-CChHHHHHHHHhhhhhEEeec----cc-cCCcHHHHHHHHHH
Confidence            4568999999999999 799999999998   67999 999999999999977432221    12 34566788888888


Q ss_pred             hhCCC--CEEEecccHHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEec--C----------------
Q 011567          166 FLGTP--DSILYSYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK--H----------------  222 (483)
Q Consensus       166 ~~g~e--~~i~~~sG~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~--~----------------  222 (483)
                      .+...  .+++.|||++||+.|+   +.+++.-|+|....+||+.....+.+++.....++  .                
T Consensus       104 ~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~  183 (442)
T KOG1404|consen  104 KLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRG  183 (442)
T ss_pred             hCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccc
Confidence            88644  4555599999999985   56789999999999999998877776664332211  0                


Q ss_pred             ---CC---------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccc
Q 011567          223 ---ND---------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSF  286 (483)
Q Consensus       223 ---~d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~  286 (483)
                         ++         .+++++.+...      .+.++++++.|++++.+|.+.+    |+++.++|+|+|.++|.||++++
T Consensus       184 ~~~~~~~~e~~d~~a~~l~d~i~~~------~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtG  257 (442)
T KOG1404|consen  184 IFGGSNEEEASDRYAKELEDLILYD------GPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTG  257 (442)
T ss_pred             cCCCCchhhhHHHHHHHHHHHHHhc------CCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhc
Confidence               01         12333343332      3446999999999999888876    99999999999999999999975


Q ss_pred             ccccCCCC-ccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH
Q 011567          287 GVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       287 g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                        +||+|. +-+|++|+-|   ||+  ||+|++|.  +-|.++.++++.+.+..... +-++.+.+|++|++++++|+++
T Consensus       258 --fGRtG~~wgfe~h~v~P---DIv--TmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~-~fnTyggnP~a~avg~aVL~Vi  329 (442)
T KOG1404|consen  258 --FGRTGHMWGFESHGVVP---DIV--TMAKGIGNGFPLGAVVTTPEIADVLNQKSS-HFNTYGGNPVACAVGLAVLKVI  329 (442)
T ss_pred             --cccccccccccccCCCc---cHH--HHHhhccCCCcceeeecCHHHHHHHHhccc-cccccCCCchhHHHHHHHHHHH
Confidence              566664 3358899988   888  99999982  12456788999998876652 3334455999999999999999


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCC-CceeecC--CCCCEEEEEecCCC-CCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIH-GLSIASN--PESPIVFLILEKST-GSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~-~~~i~~~--~~~~i~~l~l~~~~-~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      +++ +++++..+.+.+|+++|.++. +.++.++  +.+.++.+.+-+.. ............+.++|.+ .|+++..+..
T Consensus       330 kee-~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke-~Gvlvg~g~i  407 (442)
T KOG1404|consen  330 KEE-NLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKE-LGVLVGKGGI  407 (442)
T ss_pred             HHH-hHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHH-hCeeeecccc
Confidence            875 599999999999999998763 4666554  45678888875543 2222233345566777665 5999965543


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      ..       .-+||.|+.++|++|+|.+++..
T Consensus       408 ~G-------~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  408 HG-------NVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             cc-------eEEEecCCeeccHHHHHHHHHHH
Confidence            21       23999999999999998887765

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=6e-37  Score=313.38  Aligned_cols=347  Identities=16%  Similarity=0.185  Sum_probs=251.5

Q ss_pred             CccccCCCCeEE-E-CCeeEEEeecC---CCCCCCCChHHHH--HHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           94 PVLESAAGPHTI-I-SGKEVVNFASA---NYLGLIGHEKLLE--SCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        94 ~~i~~~~g~~~~-~-~G~~~id~~s~---~~lG~~~~p~i~~--a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      .++++++|.|+| + ||++||||.++   ..+|| +||+|.+  ++.+|+.+.......+  ...+.+...++.++|+++
T Consensus        28 ~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~ql~~l~~~~~~~--~~~~~~~~~~la~~l~~~  104 (443)
T PRK08297         28 LDLERSQGSYLVDARTGRRYLDMFTFFASSALGM-NHPALADDPEFRAELGRAALNKPSN--SDVYTVEMARFVDTFARV  104 (443)
T ss_pred             eEEEeccCCEEEECCCCCEeeecccCHhhhcCCC-CChHHhhHHHHHHHHHHhhhhcccc--CCcCCHHHHHHHHHHHhh
Confidence            347899999999 5 89999999997   67999 8999999  9999998743111111  112356778899999998


Q ss_pred             h-C--CCCEEEecccHHHHHhhhhhh----------cc-----CCcEEEEcCCchhHHHhHhhhcCCeE-----------
Q 011567          167 L-G--TPDSILYSYGLSTMFSAIPCF----------CK-----KGDLIVADEGVHWGIQNGLYLSRSTV-----------  217 (483)
Q Consensus       167 ~-g--~e~~i~~~sG~~a~~~ai~~~----------~~-----~gdiI~~~~~~h~s~~~g~~~s~~~v-----------  217 (483)
                      . +  .+.+++.+||++|++.|++..          .+     |..+|.+..+||+.+..++.+++...           
T Consensus       105 ~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~  184 (443)
T PRK08297        105 LGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDW  184 (443)
T ss_pred             cCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCc
Confidence            7 2  356777799999999998764          12     35688999999999887777664211           


Q ss_pred             -------EEecC-------------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHH
Q 011567          218 -------VYFKH-------------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEK  273 (483)
Q Consensus       218 -------~~~~~-------------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k  273 (483)
                             ..++.             +|.+++++++.+.       +..+++|++||+++++|.+.|    |++|+++|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~  257 (443)
T PRK08297        185 PRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERH-------PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDE  257 (443)
T ss_pred             cccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhC-------CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence                   00110             0123334444432       235899999999999998765    9999999999


Q ss_pred             cCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHH-hc-CCcee-ecCCCc
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQR-LS-SSGYV-FSASLP  349 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~-~~-~~~~~-fs~~~~  349 (483)
                      ||++||+||++++  +|++|+++ ++++++.|   ||+  +++|+++ .||++++++ +.+... .. ..+.. .+.+.|
T Consensus       258 ~g~llI~DEV~tG--fGRtG~~~a~~~~gv~P---Div--~~gK~l~-~~a~l~~~~-i~~~~~~~~~~~~~~~~T~~gn  328 (443)
T PRK08297        258 HDALLIFDEVQTG--VGLTGTAWAYQQLGVRP---DIV--AFGKKTQ-VCGIMAGRR-VDEVEDNVFAVSSRINSTWGGN  328 (443)
T ss_pred             cCCEEEEechhhc--cCccchHHHHHhcCCCC---CEE--Eeccccc-ccceecchH-HHHhhhhhccCccccCCCCCcc
Confidence            9999999999985  57788765 48899988   898  6999996 467666653 322211 00 11111 222469


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Cce--e-ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH-GLS--I-ASNPESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~--i-~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      |+.|+++.++|+.+++. ++.++++++++++++.|+++. .++  . ...+.+.++.+.+.+        ......+...
T Consensus       329 pl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~--------~~~~~~~~~~  399 (443)
T PRK08297        329 LVDMVRARRILEVIEED-GLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT--------TADRDEVIRR  399 (443)
T ss_pred             HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC--------HHHHHHHHHH
Confidence            99999999999999865 589999999999999997641 122  1 223467888888842        1234567777


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +++ +||++.+...         ..+|++|++.+|++|||++++++++++.++
T Consensus       400 l~~-~Gvl~~~~~~---------~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        400 LWE-EGVLVLPCGE---------RSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             HHH-CCEEEecCCC---------CeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            664 6999975421         239999999999999999999999998764

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=8.5e-37  Score=339.01  Aligned_cols=361  Identities=18%  Similarity=0.187  Sum_probs=270.0

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      ..|+++++++|.|+| .||++||||.++ ..+|| +||+|.+|+.+|+++....+     . ..++...++.++|++.++
T Consensus       605 ~~p~~i~~g~G~~l~D~dG~~ylD~~~g~~~lGH-~hp~v~~Ai~~q~~~l~~~~-----~-~~~~~~~~lAe~L~~~~p  677 (1013)
T PRK06148        605 SDPIKFVRGWGVWLIDNRGRAYLDCFNNVCHVGH-AHPRVVAAAARQAARLNTNT-----R-YLHDAIVAYAERLTATLP  677 (1013)
T ss_pred             CCCceEEEeeecEEEECCCCEEEEcccChhhcCC-CCHHHHHHHHHHHhhcCCcC-----C-cCCHHHHHHHHHHHHhCC
Confidence            457889999999999 899999999988 67999 89999999999999853321     1 135788999999999986


Q ss_pred             C--CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC------------eE--------EEecCC
Q 011567          169 T--PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS------------TV--------VYFKHN  223 (483)
Q Consensus       169 ~--e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v--------~~~~~~  223 (483)
                      .  +.+++++||++|++.|++   .+++|.++|.++.+||+.+...+.+++.            .+        ...+++
T Consensus       678 ~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  757 (1013)
T PRK06148        678 DGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPER  757 (1013)
T ss_pred             CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCC
Confidence            4  566777999999999975   5678999999999999987765554431            11        111223


Q ss_pred             --CH-------HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567          224 --DM-------DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG  290 (483)
Q Consensus       224 --d~-------~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg  290 (483)
                        |.       +++++.++....    .+..+++|++||+++++|.+.|    |++++++|++||+++|+||++++  +|
T Consensus       758 ~~~~~~~~~~~~~l~~~i~~~~~----~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtG--fG  831 (1013)
T PRK06148        758 WPDAEHGRRFAESVAEQIAAMAA----KGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVG--FG  831 (1013)
T ss_pred             CChhhhHHHHHHHHHHHHHhhhc----cCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccC--CC
Confidence              21       345555533211    1235899999999999998887    99999999999999999999975  46


Q ss_pred             CCCC--ccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC
Q 011567          291 RSGR--GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       291 ~~G~--g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~  366 (483)
                      ++|.  +..+++|+.|   ||+  +++|++|.  +-|.+++++++++.+.... .+..+.+.||+.|++++++|++++++
T Consensus       832 RtG~~~~a~e~~gv~P---Div--t~gK~lggG~Plgav~~~~ei~~~~~~g~-~~~~Tf~gnpla~aaa~a~L~~i~~e  905 (1013)
T PRK06148        832 RVGSHWWAFETQGVVP---DIV--TMGKPIGNGHPMGAVVTTREIADSFDNGM-EYFNTFGGNPVSCAIGLAVLDIIEDE  905 (1013)
T ss_pred             CCCCcchhhhhcCCCc---cee--eecccccCCcceEEEEEcHHHHhhccCCC-ccccCCCCCHHHHHHHHHHHHHHhhc
Confidence            6665  3468899988   898  79999982  1134678899998875431 12233356999999999999999875


Q ss_pred             cHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567          367 PDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD  443 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~  443 (483)
                       ++.+++++++++|+++|+++. .+++.  ....+.++.+.+..+......+......+...|++ +||++.+....   
T Consensus       906 -~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~g~~---  980 (1013)
T PRK06148        906 -DLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE-RGILIGTEGPH---  980 (1013)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh-CCeEEeccCCC---
Confidence             589999999999999997752 22221  23467788888754322222233445677877665 59999754211   


Q ss_pred             cCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          444 KCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       444 ~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                          ...|||.|+..+|++|||++++++++++.++.
T Consensus       981 ----~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148        981 ----DNVLKIRPPLIFSRADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred             ----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence                13499999999999999999999999998764

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=2.8e-37  Score=314.46  Aligned_cols=343  Identities=15%  Similarity=0.118  Sum_probs=246.7

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHH--HHhcCCCCCCCCCcccChHHHHHHHHHHH
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSA--LEKYGVGSCGPRGFYGTIDVHLDCEARIA  164 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~--l~~~g~g~~~~~~~~g~~~~~~~l~~~La  164 (483)
                      +.|..+++++|.|+| .||++||||.++   ..+|| +||+|.+|+.++  ...... ..    .+ ..+...+++++|+
T Consensus        39 ~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh-~~p~i~~Ai~~q~~~~~l~~-~~----~~-~~~~~~~la~~l~  111 (464)
T TIGR00699        39 HFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGY-NNPALLKAAQSPEMATTLIN-RP----AL-GNFPSKDWAKILK  111 (464)
T ss_pred             ccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCC-CCHHHHHHHHHHHHHHhhcc-cc----cC-CcHHHHHHHHHHH
Confidence            447789999999999 899999999997   78999 899999999985  333211 11    11 2345667777765


Q ss_pred             h----hhC--CCCEEEecccHHHHHhhhhhhc----------------------------c--CCcEEEEcCCchhHHHh
Q 011567          165 K----FLG--TPDSILYSYGLSTMFSAIPCFC----------------------------K--KGDLIVADEGVHWGIQN  208 (483)
Q Consensus       165 ~----~~g--~e~~i~~~sG~~a~~~ai~~~~----------------------------~--~gdiI~~~~~~h~s~~~  208 (483)
                      +    +++  .+.+++.+||++|++.|++...                            +  +.++|.+..+||+.+..
T Consensus       112 ~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~  191 (464)
T TIGR00699       112 EGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFG  191 (464)
T ss_pred             HhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHH
Confidence            4    554  3566677999999999987541                            1  22689999999999887


Q ss_pred             HhhhcCCeE-----------EEecC-------------------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          209 GLYLSRSTV-----------VYFKH-------------------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       209 g~~~s~~~v-----------~~~~~-------------------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++.+++...           ..++.                   ++++++++++++...       .+++|++||+++++
T Consensus       192 als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-------~iAAvI~EPv~g~~  264 (464)
T TIGR00699       192 SLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHK-------PVAAIIVEPIQSEG  264 (464)
T ss_pred             HHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCC-------cEEEEEEeCCCCCC
Confidence            777654311           01111                   124456666654322       48999999999999


Q ss_pred             CCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCceeeccHHHHH
Q 011567          259 GQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD  333 (483)
Q Consensus       259 G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~  333 (483)
                      |.+.|    |++|+++|++||++||+||++++  +|++|+++ ++++|+. ..+||+  +++|++|+ ||++++++. +.
T Consensus       265 G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tG--fGrtG~~fa~e~~gv~-~~PDi~--t~gK~lg~-gG~~~~~~~-~~  337 (464)
T TIGR00699       265 GDNHASPDFFRKLRDITKKHNVAFIVDEVQTG--VGATGKFWAHEHWNLD-DPPDMV--TFSKKFQT-AGYFFHDPA-FR  337 (464)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeC--CCCCcchhHHHhcCCC-CCCCEE--Eehhhhcc-CCccccchh-cc
Confidence            99887    99999999999999999999975  47888775 5899996 233897  79999952 466555432 11


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC-Cce-ee----cCCCCCEEEEEecC
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH-GLS-IA----SNPESPIVFLILEK  407 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~-~~~-i~----~~~~~~i~~l~l~~  407 (483)
                      ......++.+|  +.||+.|+++.++|+.++++ ++.++++++.++|++.|+++. .++ +.    +.+.+.++.+.+.+
T Consensus       338 ~~~~~~~~~T~--~gnp~~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~  414 (464)
T TIGR00699       338 PNKPYRQFNTW--MGDPSRALILREIIQEIKRK-DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD  414 (464)
T ss_pred             CCCCcccccCC--CCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC
Confidence            10111122233  46899999999999999865 489999999999999997752 233 21    12567888888731


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                              ......+.+.+++ +|+++....         ...|||+|++.+|++||++++++|++++
T Consensus       415 --------~~~~~~i~~~~~~-~Gvl~~~~g---------~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       415 --------EAKRDKLLKKARN-NGVNIGGCG---------VKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             --------HHHHHHHHHHHHH-CCcEEecCC---------CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                    2234577777766 599987542         1339999999999999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=3.4e-36  Score=306.94  Aligned_cols=355  Identities=17%  Similarity=0.231  Sum_probs=264.1

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.++| +|||+||||.++   ..+|| +||+|.+|+.+++++......    .....+...++.++|++.++
T Consensus        23 ~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~----~~~~~~~~~~la~~l~~~~p   97 (421)
T PRK09792         23 NFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTAY----QIVPYESYVTLAEKINALAP   97 (421)
T ss_pred             CeeEEeccccEEEeCCCCEEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCccc----CccCCHHHHHHHHHHHHhCC
Confidence            5778999999999 899999999987   67999 899999999999998542111    11245777899999999875


Q ss_pred             C---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecC-------
Q 011567          169 T---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKH-------  222 (483)
Q Consensus       169 ~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~-------  222 (483)
                      .   +.+++++||++|++.|++   .+++|..+|.+...||+.+...+.+++.             .+..++.       
T Consensus        98 ~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~  177 (421)
T PRK09792         98 VSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGI  177 (421)
T ss_pred             CCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccc
Confidence            2   567778999999999975   4568888999999999987766665442             1222222       


Q ss_pred             ---CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc-C---hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567          223 ---NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA-P---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       223 ---~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~-~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g  295 (483)
                         ++.+.+++.+++..     .+..+++|++||+++++|... |   +++|+++|++||+++|+||++++  +|++|++
T Consensus       178 ~~~~~~~~l~~~~~~~~-----~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg--~gr~G~~  250 (421)
T PRK09792        178 STQDSLDAIERLFKSDI-----EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSG--FARTGKL  250 (421)
T ss_pred             cHHHHHHHHHHHHHhcc-----CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCCCCch
Confidence               23466676665421     012489999999999988755 5   99999999999999999999985  5777766


Q ss_pred             cc-cccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHH
Q 011567          296 LT-EHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITK  372 (483)
Q Consensus       296 ~~-~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~  372 (483)
                      +. +++++.|   ||+  |++|++++  +-|++++++++++.+....+..+|  +.||+.++++.+++++++++ ++.++
T Consensus       251 ~a~~~~~~~p---Di~--t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~--~gnpl~~aaa~a~l~~l~~~-~~~~~  322 (421)
T PRK09792        251 FAMDHYADKP---DLM--TMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTY--AGNPLAVAAAHAVLNIIDKE-SLCER  322 (421)
T ss_pred             hHHHhcCCCC---cEE--EeehhhcCCCceEEEEEcHHHHhccCCCCcCCCC--CCCHHHHHHHHHHHHHHHhh-hHHHH
Confidence            54 7788776   775  89999972  236688899999887654444444  46899999999999999765 58889


Q ss_pred             HHHHHHHHHHhhccCC-Cce--eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          373 LKKNTAILRTGLSDIH-GLS--IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       373 l~~~~~~l~~~L~~~~-~~~--i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      ++++.+++++.|+.+. .++  ......+.++++.+.+... ...+......+...+++ +||++.+...       .+.
T Consensus       323 ~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~-~~~~~~~~~~l~~~~~~-~Gv~i~~~g~-------~~~  393 (421)
T PRK09792        323 ANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQT-GEPSAAIAQKIQQRALA-QGLLLLTCGA-------YGN  393 (421)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCcc-CCcchHHHHHHHHHHHH-CCcEEeecCC-------CCC
Confidence            9999999988887642 122  2223347888998864311 11122345677877776 5999853211       124


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .||+.|++.+|++|+++++++++++++
T Consensus       394 ~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        394 VIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             EEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            599999999999999999999998874

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=7.8e-36  Score=307.14  Aligned_cols=361  Identities=16%  Similarity=0.239  Sum_probs=261.0

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.|+| .|||+||||.++   ..+|| +||+|.+|+.+++++......  .  ...++...++.++|+++++
T Consensus        37 ~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~--~--~~~~~~~~~la~~L~~~~p  111 (451)
T PRK06918         37 PTFAQSANGALVTDVDGNQYIDFAGAIGTINVGH-SHPKVKEALHKQVDQYIHTGF--N--VMMYEPYIELAEKLAALAP  111 (451)
T ss_pred             CceEEeccccEEEeCCCCEEEEcCCchhhcCCCC-CCHHHHHHHHHHHHhccCccc--c--ccccHHHHHHHHHHHHhCC
Confidence            5789999999999 899999999997   67999 899999999999998532111  1  1235778999999999986


Q ss_pred             C---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecCCC-----
Q 011567          169 T---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKHND-----  224 (483)
Q Consensus       169 ~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~~d-----  224 (483)
                      .   +.+++++||++|++.|++   .+++|..+|.+..+||+.+..++.+++..             +..+++.+     
T Consensus       112 ~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (451)
T PRK06918        112 GSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRP  191 (451)
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCcccccc
Confidence            3   356666999999999975   46788999999999999887777654421             12222211     


Q ss_pred             ------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          225 ------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       225 ------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                                  .+.+++.++...     .+.++++|++||+++++|.+.|    +++|+++|++||++||+||++++  
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg--  264 (451)
T PRK06918        192 EGLTEEQYDDFMIEEFKNFFISEV-----APETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG--  264 (451)
T ss_pred             ccCchHHHHHHHHHHHHHHHHhhc-----CCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--
Confidence                        112333332110     1235899999999999887665    89999999999999999999975  


Q ss_pred             ccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          289 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       289 lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      +|++|..+ .+++++.|   |++  |+||++++  +-|++++++++++.+....+..+|  +.+|+.++++.++++.+++
T Consensus       265 ~gr~g~~~a~~~~~v~p---Di~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~--~g~~l~~aaa~a~l~~i~~  337 (451)
T PRK06918        265 FARTGKYFAIEHFDVVP---DLI--TVSKSLGAGVPISGVIGRKEIMDESAPGELGGTY--AGSPLGCAAALAVLDIIEK  337 (451)
T ss_pred             cCccCceehhHhcCCCC---CEE--eeehhhcCCCccEEEEEcHHHHhccCCCCcCcCC--CcCHHHHHHHHHHHHHHHH
Confidence            45556433 46778776   766  89999982  127788999998887544344444  4589999999999999875


Q ss_pred             CcHHHHHHHHHHHHHHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567          366 NPDLITKLKKNTAILRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                      . ++.++++++++++++.|+++. .+++.  ..+.+.++.+.+..+......+......+...+++ +||++.+....  
T Consensus       338 ~-~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gvlv~~~~~~--  413 (451)
T PRK06918        338 E-NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANK-RGLLLLSAGTY--  413 (451)
T ss_pred             C-CHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHH-CCeEEeecCCC--
Confidence            4 478888888899988887652 23221  12356666666532111111233345667776555 69999775321  


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                           .+.+|++++..+|+++|++++++|+++++++..+
T Consensus       414 -----~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~  447 (451)
T PRK06918        414 -----GNVIRVLMPLVITDEQLEEGLTIIEESLQACYEK  447 (451)
T ss_pred             -----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence                 1349999999999999999999999999887654

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=3.2e-36  Score=308.94  Aligned_cols=375  Identities=20%  Similarity=0.270  Sum_probs=271.6

Q ss_pred             HHHHHHhhcCCCCCCcccccc--cccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567           68 EIDELCDEWVPESLIPPIIEE--MRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~--~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      +.-+...++.|-.........  ..+.|.++++++|.++| .||++||||.++   ..+|| +||+|.+|+++++++. .
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~-~   81 (423)
T TIGR00713         4 NLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGH-AHPRVVEAVKEALERG-T   81 (423)
T ss_pred             HHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhC-C
Confidence            344455666676654332221  12347789999999999 899999999997   56899 8999999999999873 2


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhhCC-CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhc----
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFLGT-PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLS----  213 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~g~-e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s----  213 (483)
                      .      ++...+...+|+++|+++++. +++++++||++|++.|++   .++++..+|.++..||+........+    
T Consensus        82 ~------~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~  155 (423)
T TIGR00713        82 S------YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGA  155 (423)
T ss_pred             c------CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcc
Confidence            1      223456789999999998864 466677999999999976   46678889999999998643222111    


Q ss_pred             ---------------CCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHc
Q 011567          214 ---------------RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKY  274 (483)
Q Consensus       214 ---------------~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~  274 (483)
                                     ......++++|+++|++.+++...       ++++|++||+++++|.+.|    +++|+++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-------~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  228 (423)
T TIGR00713       156 ATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGE-------EIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEY  228 (423)
T ss_pred             cccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCC-------cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHh
Confidence                           113456788999999998875322       4789999999999998877    89999999999


Q ss_pred             CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec-CCCcHH
Q 011567          275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS-ASLPPY  351 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs-~~~~p~  351 (483)
                      |+++|+||+|++.++|.  .+..+++++.|   |++  ||||++++  +.|++++++++++.+......+.++ .+.+|+
T Consensus       229 ~~llI~DEv~~g~r~g~--~~~~~~~~~~p---Di~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~  301 (423)
T TIGR00713       229 GSLLIFDEVMTGFRVAL--GGAQEYFGVEP---DLT--TLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPL  301 (423)
T ss_pred             CCEEEEEccccccccCc--chhHHHhCCCc---chh--hhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHH
Confidence            99999999998655542  34557788877   765  89999983  3588999999999886432222222 257999


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHH
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIA  423 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~i~  423 (483)
                      .++++.++|+.+++.+ ..++++++.+++++.|.++   .++.......+.++.+.+..+...     ...+......++
T Consensus       302 ~~aaa~a~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  380 (423)
T TIGR00713       302 AMAAGLATLKLLDEEG-VYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFF  380 (423)
T ss_pred             HHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHH
Confidence            9999999999987653 7778888888877776532   144432234677888777532110     001223345677


Q ss_pred             HHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          424 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       424 ~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+++ +||++.+..+         +.+|++++  +|++||+++++++++++++
T Consensus       381 ~~l~~-~Gv~v~~~~~---------~~~~l~~~--~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       381 HEMLD-KGVFLPPSQF---------EACFLSAA--HTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             HHHHH-CCeEEecCCc---------cceeeECC--CCHHHHHHHHHHHHHHHhh
Confidence            77775 6999875432         22788765  8999999999999998865

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=5.5e-36  Score=305.97  Aligned_cols=356  Identities=17%  Similarity=0.238  Sum_probs=261.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   ..+|| +||+|.+|+.+++++..... .   .....+...++.++|++++
T Consensus        15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~ql~~~~~~~-~---~~~~~~~~~~la~~l~~~~   89 (420)
T TIGR00700        15 LPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGH-SHPRVVDAVRTQVAEFTHTC-F---MVTPYEGYVALAEKLNRIA   89 (420)
T ss_pred             CCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCC-CCHHHHHHHHHHHHhccCcc-c---cccCChHHHHHHHHHHHhC
Confidence            46789999999999 899999999997   67999 89999999999999854211 1   1123467789999999998


Q ss_pred             CC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCC-----
Q 011567          168 GT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN-----  223 (483)
Q Consensus       168 g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~-----  223 (483)
                      +.   +.+++++||++|++.|++   .+++|..+|.+..+||+.+...+.+++.             .+..++..     
T Consensus        90 p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (420)
T TIGR00700        90 PGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRD  169 (420)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccc
Confidence            52   456777999999999975   4678888999999999988777765432             11112221     


Q ss_pred             -----------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          224 -----------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       224 -----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                                 +++.+++.+....     .+..+++|++||+++++|.+.|    +++|+++|++||++||+||++++  
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg--  242 (420)
T TIGR00700       170 GLLDKQLSTDGELAAARAIFVIDV-----GANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTG--  242 (420)
T ss_pred             cccccchhHHHHHHHHHHHHHhhc-----CCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccC--
Confidence                       1334555543110     1235899999999999998777    99999999999999999999985  


Q ss_pred             ccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          289 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       289 lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      +|++|.++ .+++++.|   |++  ++||++++  +-|++++++++++.+....+..+|+  .+|+.++++.++++.+++
T Consensus       243 ~gr~g~~~a~~~~~~~p---Di~--~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~--~~pl~~aaa~a~l~~l~~  315 (420)
T TIGR00700       243 FARTGAMFACEHEGPEP---DLI--TTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYA--GNPLACAAALAVLAIIES  315 (420)
T ss_pred             CcccchhHHHhhcCCCC---CEE--EeeccccCCcceEEEEecHHHHhhcCCCCcCCCCC--cCHHHHHHHHHHHHHHHh
Confidence            56666543 46788877   776  69999982  2277889999998876544444554  589999999999999876


Q ss_pred             CcHHHHHHHHHHHHHHHhhccCCC-ce--eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567          366 NPDLITKLKKNTAILRTGLSDIHG-LS--IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L~~~~~-~~--i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                      . .+.+++++..+++++.|+++.. ++  ....+.+.++++.+.++. ....+.....++...+++ +||++.+....  
T Consensus       316 ~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f--  390 (420)
T TIGR00700       316 E-GLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPG-TTEPDAGLAERIATAAHA-AGLLLLTCGMF--  390 (420)
T ss_pred             c-cHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCC-CCCccHHHHHHHHHHHHH-CCeEEeccCCC--
Confidence            4 4888888888888888876421 11  112345778888774321 111233445667776554 69999875321  


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                           .+.|||+|+..+|++++++++++|+++++
T Consensus       391 -----~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       391 -----GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             -----CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                 13499999999999999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.6e-36  Score=300.12  Aligned_cols=332  Identities=18%  Similarity=0.266  Sum_probs=251.9

Q ss_pred             ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh
Q 011567           90 RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK  165 (483)
Q Consensus        90 ~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~  165 (483)
                      +..|..+.+++|.++| .||++||||.++   ..+|| +||++.+|+++|+++....  ++ . + .++...+++++|++
T Consensus         4 ~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~--~~-~-~-~~~~~~~la~~l~~   77 (364)
T PRK04013          4 YRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVA--GP-M-F-EHEEKEEMLEELSK   77 (364)
T ss_pred             cCCCccEEEeecCEEEECCCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCc--cC-C-c-CCHHHHHHHHHHHh
Confidence            3457789999999999 899999999987   67999 8999999999999985321  21 1 2 35778999999999


Q ss_pred             hhCCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHHHHHH
Q 011567          166 FLGTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMDSLRN  230 (483)
Q Consensus       166 ~~g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~~Le~  230 (483)
                      +.+.+.+++++||++|++.|++.   +++|..+|.++..||+.....+.+++            ..+..++.+|.+.+++
T Consensus        78 ~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~  157 (364)
T PRK04013         78 WVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKE  157 (364)
T ss_pred             hcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHH
Confidence            99888888889999999999865   45677899999999998766665432            1245567788888887


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCC
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVD  305 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~  305 (483)
                      .+.+          .+++|++||+++++|.+.|    |++|+++|++||+++|+||++++.   ++|.++ .+++++.| 
T Consensus       158 ~i~~----------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~---RtG~~~a~~~~gv~P-  223 (364)
T PRK04013        158 AITK----------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL---RTGKFLAIEHYKVEP-  223 (364)
T ss_pred             HhcC----------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC---CCCchhHHHhcCCCC-
Confidence            7742          3899999999999887665    999999999999999999999853   566654 47899988 


Q ss_pred             ceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                        ||+  +++|++|  ||+    ++.+.++    ....++.+|  +.||+.|+++.++|+.+++++ +.++.++.   +.
T Consensus       224 --Div--~~gK~lg--gG~P~~a~~~~~~~----~~~~~~~T~--~gnp~~~aaa~a~l~~i~~~~-l~~~~~~~---l~  287 (364)
T PRK04013        224 --DIV--TMGKGIG--NGVPVSLTLTNFDV----ERGKHGSTF--GGNPLACKAVAVTLRILRRER-LVEKAGEK---FI  287 (364)
T ss_pred             --CEE--Eeccccc--CCceeEEEEecccc----cCCCcCCCC--CcCHHHHHHHHHHHHHHHhcc-HHHHHHHH---HH
Confidence              888  7999998  443    4455454    112233333  569999999999999998754 77776664   22


Q ss_pred             HhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          382 TGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       382 ~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                       .+.. +.+ ......+.++.+.+..+          ..++...+++ +|+++.+...         +.||+.|+..+|+
T Consensus       288 -~l~~-~~v-~~vRG~Gl~~gve~~~~----------~~~i~~~~~~-~Gll~~~~g~---------~vlr~~Ppl~it~  344 (364)
T PRK04013        288 -EIKG-ERV-VTTRGRGLMIGIVLKKP----------VGKYVEELQN-RGYLVHTAGQ---------RVIRLLPPLIISK  344 (364)
T ss_pred             -Hhcc-Ccc-eeeeeCcEEEEEEeCCc----------HHHHHHHHHh-CCcEEeeCCC---------CEEEEeCCcccCH
Confidence             2322 211 11134577888888421          2356776665 5999865421         2399999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011567          462 ADLVKACESLKRISAVVLR  480 (483)
Q Consensus       462 edi~~~~~~l~~~~~~~~~  480 (483)
                      +|+++++++|++++.+++.
T Consensus       345 ~~i~~~~~~l~~~l~~~~~  363 (364)
T PRK04013        345 DTMEEAKSAIEGVINDILG  363 (364)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=1.4e-35  Score=302.97  Aligned_cols=347  Identities=19%  Similarity=0.255  Sum_probs=245.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.|+| .||++||||.++   ..+|| +||+|.+|+++|+++...       +........++.++|++.+
T Consensus        30 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~-------~~~~~~~~~~la~~l~~~~  101 (431)
T PRK06209         30 APGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGH-AYPPVVEAVREALQDGCN-------FTRPSAIELDAAESFLELI  101 (431)
T ss_pred             CCeEEEeccCCEEEeCCCCEEEEccccccchhcCC-CCHHHHHHHHHHHHhCcC-------CCCCCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999987   67999 899999999999997421       2223445668899999988


Q ss_pred             C-CCCEEEecccHHHHHhhhh---hhccCCcEEEE-cCCchhHH--HhHhh-hc-C------CeEEEecCCCHHHHHHHH
Q 011567          168 G-TPDSILYSYGLSTMFSAIP---CFCKKGDLIVA-DEGVHWGI--QNGLY-LS-R------STVVYFKHNDMDSLRNTL  232 (483)
Q Consensus       168 g-~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~-~~~~h~s~--~~g~~-~s-~------~~v~~~~~~d~~~Le~~l  232 (483)
                      + .+.+.+++||++|++.|++   .+++|..++.+ ...+|+..  ..+.. .+ +      ..+..++|||+++|++++
T Consensus       102 p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l  181 (431)
T PRK06209        102 DGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALF  181 (431)
T ss_pred             CccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHH
Confidence            5 4566777999999999976   45677777776 44555310  00100 11 1      124578899999999998


Q ss_pred             HHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEc
Q 011567          233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTA  312 (483)
Q Consensus       233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~  312 (483)
                      ++...       ++++|++||++++.+...+|++|+++|++||++||+||++++  ++.++.|..+++++.|   ||+  
T Consensus       182 ~~~~~-------~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG--~~~~~~g~~~~~gv~P---Di~--  247 (431)
T PRK06209        182 EDHPG-------RIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITG--FRWHMRGAQKLYGIVP---DLS--  247 (431)
T ss_pred             HhCCC-------CEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccccc--CCcCcchhhHHhCCCc---cee--
Confidence            75332       488999999997744444499999999999999999999964  2445566767789987   886  


Q ss_pred             cccccccC--CCceeeccHHHHHH--HHh--cCCceeecC--CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          313 AMGHALAT--EGGFCTGSARVVDH--QRL--SSSGYVFSA--SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       313 s~~K~lg~--~GG~i~~~~~~~~~--~~~--~~~~~~fs~--~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.  ++|++++++++++.  +..  ....+.+++  +.||+.|++++++|++++++ ++.++++++.++|++.|
T Consensus       248 t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~L  326 (431)
T PRK06209        248 CFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE-DVIERLHEQGAKLAAGV  326 (431)
T ss_pred             eehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Confidence            79999973  56778899999887  321  123343443  45789999999999999876 48999999999999988


Q ss_pred             ccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          385 SDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       385 ~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      +++   .++.......+..+.+.+.........+......+...+++ +|+++.+                ++++..||+
T Consensus       327 ~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~----------------l~is~~ht~  389 (431)
T PRK06209        327 NEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS----------------LVVSYAHGD  389 (431)
T ss_pred             HHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc----------------ccccccCCH
Confidence            653   13221111112222222211000001122233456666655 5997621                345578999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISAVV  478 (483)
Q Consensus       462 edi~~~~~~l~~~~~~~  478 (483)
                      +||+++++++++++.++
T Consensus       390 ~dId~~l~~l~~~l~~~  406 (431)
T PRK06209        390 ADIERTIDAVHGALGVY  406 (431)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999876

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.1e-34  Score=293.40  Aligned_cols=341  Identities=21%  Similarity=0.297  Sum_probs=260.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.++| .||++||||.++   +++|+ +||++.+++.+++++....   +.  .+..+...+++++|+++.
T Consensus        21 ~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~la~~l~~~~   94 (396)
T PRK02627         21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHT---SN--LYYIEPQEELAEKLVELS   94 (396)
T ss_pred             CCceEEeeeeCEEEeCCCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhcccc---cc--ccCCHHHHHHHHHHHhhc
Confidence            36789999999999 899999999995   78999 8899999999999875321   11  124678899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhc---cC-----CcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFC---KK-----GDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDS  227 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~---~~-----gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~  227 (483)
                      |.++++++++|++|+..+++++.   ++     .+++..+..+|+....++..++.            .+..++++|+++
T Consensus        95 ~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  174 (396)
T PRK02627         95 GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEA  174 (396)
T ss_pred             CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHH
Confidence            99888899999999999988543   33     45788889999887666665432            235567889999


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCC
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGV  302 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v  302 (483)
                      +++.+..          ++++|++||+++++|.. .|   +++|+++|++||++||+||+|++  +|++|.+. .+++++
T Consensus       175 l~~~i~~----------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g--~g~~g~~~~~~~~~~  242 (396)
T PRK02627        175 LKAAITD----------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTG--MGRTGKLFAYQHYGI  242 (396)
T ss_pred             HHHhcCC----------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcC--CCccCceeeehhcCC
Confidence            9887732          37899999999888843 33   89999999999999999999984  46666543 356777


Q ss_pred             CCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      .|   |++  ||||++++  +-|++++++++++.+.......+|  +.+|+.++++.++++.+++. +..++++++.+++
T Consensus       243 ~p---di~--t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~~~l~~~~~~-~~~~~~~~~~~~~  314 (396)
T PRK02627        243 EP---DIM--TLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTF--GGNPLACAAALAVIEIIEEE-GLLENAAEVGEYL  314 (396)
T ss_pred             CC---CEE--EEcchhhCCcccEEEEEcHHHHhccCCCCCCCCC--CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence            66   765  79999983  237888999998887543333344  45899999999999988754 4778888888888


Q ss_pred             HHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC
Q 011567          381 RTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA  457 (483)
Q Consensus       381 ~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~  457 (483)
                      ++.|.++. .++.  ...+.+.++++.+..          ...+++..++++ ||++.+...         ..+|++++.
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~-Gv~v~~~~~---------~~lRi~~~~  374 (396)
T PRK02627        315 RAKLRELLEKYPGIKEVRGLGLMIGIELDR----------PAAEIVKKALEK-GLLINVTGD---------NVLRLLPPL  374 (396)
T ss_pred             HHHHHHHHHhCCCeeeeccCcEEEEEEecC----------cHHHHHHHHHHC-CeEEeecCC---------CEEEEECCc
Confidence            88876641 1211  112346677777621          134677777665 999987531         339999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+|++++++++++|++++++.
T Consensus       375 ~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        375 IISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             ccCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998765

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=3.3e-35  Score=300.34  Aligned_cols=340  Identities=16%  Similarity=0.187  Sum_probs=242.8

Q ss_pred             ccccCCCCeEE-E-CCeeEEEeecC---CCCCCCCChHHH--HHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           95 VLESAAGPHTI-I-SGKEVVNFASA---NYLGLIGHEKLL--ESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        95 ~i~~~~g~~~~-~-~G~~~id~~s~---~~lG~~~~p~i~--~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .+++++|.++| . ||++||||.++   ..+|| +||+|.  +|+.+++++.......+.  ....+...++.++|++.+
T Consensus        22 ~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~   98 (431)
T TIGR03251        22 DLDRSRGSVLVDARDGRRYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPSNS--DVYTVAMARFVDTFARVL   98 (431)
T ss_pred             EEEeccCCEEEECCCCCChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccccC--CCCCHHHHHHHHHHHHhc
Confidence            35999999999 5 89999999997   67999 899999  999999987421111111  123466678888888875


Q ss_pred             C---CCCEEEecccHHHHHhhhhhh---c-------c-----CCcEEEEcCCchhHHHhHhhhcCCeEE-----------
Q 011567          168 G---TPDSILYSYGLSTMFSAIPCF---C-------K-----KGDLIVADEGVHWGIQNGLYLSRSTVV-----------  218 (483)
Q Consensus       168 g---~e~~i~~~sG~~a~~~ai~~~---~-------~-----~gdiI~~~~~~h~s~~~g~~~s~~~v~-----------  218 (483)
                      +   .+.+++.+||++|++.|++..   +       +     +..+|.+..+||+.+..++.+++....           
T Consensus        99 ~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~  178 (431)
T TIGR03251        99 GDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWP  178 (431)
T ss_pred             CCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCc
Confidence            2   356677799999999998654   2       1     346888999999998877766553100           


Q ss_pred             -------EecC-------------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHc
Q 011567          219 -------YFKH-------------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKY  274 (483)
Q Consensus       219 -------~~~~-------------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~  274 (483)
                             .++.             ++++++++.++.       .+..+++|++||+++++|.+.|    |++|+++|++|
T Consensus       179 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~  251 (431)
T TIGR03251       179 RIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE-------RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH  251 (431)
T ss_pred             cCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh-------CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc
Confidence                   0011             112233334432       2235899999999999998765    99999999999


Q ss_pred             CcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCCceeeccH--HHHHH-HH-hcCCceeecCCCc
Q 011567          275 RFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSA--RVVDH-QR-LSSSGYVFSASLP  349 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~--~~~~~-~~-~~~~~~~fs~~~~  349 (483)
                      |++||+||++++  +|++|.++ .+++|+.|   ||+  +++|++ +.||++.+++  ++.+. +. ...+..+|  +.+
T Consensus       252 g~llI~DEV~tG--~GrtG~~~a~~~~gv~P---Di~--~~gK~~-~~~g~~~~~~i~~~~~~~~~~~~~~~~T~--~gn  321 (431)
T TIGR03251       252 DALLIFDEVQTG--VGLTGTAWAYQQLGVQP---DIV--AFGKKT-QVCGIMAGRRVDEVADNVFAVPSRLNSTW--GGN  321 (431)
T ss_pred             CCEEEEecchhc--cCccchHHHHHhcCCCC---CEE--EecccC-ccceEEecchHHHhhhhcccCccccCCCC--CCC
Confidence            999999999984  57787765 48899988   898  689998 4467776654  22321 11 11122333  468


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      |+.++++.++|+.+++. .+.++++++.+++++.|+++    +++.....+.+.++.+.+.+        .....++...
T Consensus       322 pl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~--------~~~~~~~~~~  392 (431)
T TIGR03251       322 LVDMVRATRILEIIEEE-RLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS--------TADRDEVIRQ  392 (431)
T ss_pred             HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC--------HHHHHHHHHH
Confidence            99999999999999765 47889999999999888664    11222223457788888732        1234467776


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +++ +||++.+...         ..+|++|+..+|++||+++++++++
T Consensus       393 l~~-~Gvl~~~~g~---------~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       393 LYR-EGVLLLGCGE---------RSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             HHh-CCeEEecCCC---------CeEEEECCccCCHHHHHHHHHHHHh
Confidence            664 6999865421         3399999999999999999999976

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=8e-34  Score=290.62  Aligned_cols=358  Identities=18%  Similarity=0.231  Sum_probs=261.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||.++   ..+|| +||++.+++.+++++++... .+  .+ ..+...++.+.|++..
T Consensus        23 ~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~~~~~~~-~~--~~-~~~~~~~la~~l~~~~   97 (425)
T PRK08088         23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTC-FQ--VL-AYEPYLELCEKMNQKV   97 (425)
T ss_pred             CCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCC-CCHHHHHHHHHHHhhCCCcc-cc--cc-CCHHHHHHHHHHHHhC
Confidence            46789999999999 899999999987   67999 89999999999999865311 11  11 2356679999999988


Q ss_pred             CC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCeE-------------E--Eec--CCC
Q 011567          168 GT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRSTV-------------V--YFK--HND  224 (483)
Q Consensus       168 g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v-------------~--~~~--~~d  224 (483)
                      +.   ++.++.+||++|++.|++   ++++|+++|.++..||+.......+++...             .  .++  .++
T Consensus        98 ~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  177 (425)
T PRK08088         98 PGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG  177 (425)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC
Confidence            64   466777999999998864   567899999999999998877666543210             0  111  121


Q ss_pred             ------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          225 ------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       225 ------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                            +++|+++++...     .+...++|++||++++.|.+.|    +++|+++|++||+++|+||+|++  +|++|.
T Consensus       178 ~~~~~~~~~l~~~l~~~~-----~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g--~g~~g~  250 (425)
T PRK08088        178 VSEDDAIASIERIFKNDA-----APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG--AGRTGT  250 (425)
T ss_pred             ccHHHHHHHHHHHHHhcc-----CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCcc
Confidence                  445666664211     1124899999999999888776    99999999999999999999985  566666


Q ss_pred             cc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHH
Q 011567          295 GL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLIT  371 (483)
Q Consensus       295 g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~  371 (483)
                      +. .+++++.|   |+.  ||||++++  +-|++++++++++.+.......+|  +.+|+.++++.+.|+.++.. ++.+
T Consensus       251 ~~~~~~~~~~p---di~--s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~~a~~~~l~~~~~~-~~~~  322 (425)
T PRK08088        251 LFAMEQMGVAA---DLT--TFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTY--AGNPIACAAALAVLKVFEQE-NLLQ  322 (425)
T ss_pred             hhHHhhcCCCC---CEE--EEeccccCCCcceeeEecHHHHhhcCCCCCCCCC--CcCHHHHHHHHHHHHHHHhc-CHHH
Confidence            54 35677665   654  89999972  226799999999988655444344  46899999999999988654 4788


Q ss_pred             HHHHHHHHHHHhhccCC-Ccee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCC
Q 011567          372 KLKKNTAILRTGLSDIH-GLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP  448 (483)
Q Consensus       372 ~l~~~~~~l~~~L~~~~-~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~  448 (483)
                      ++++..+++++.|.++. .++.  ...+.+.++++.+..+......+.....++...+++ +||++.+....       +
T Consensus       323 ~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~-------~  394 (425)
T PRK08088        323 KANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY-------Y  394 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC-------C
Confidence            88888888888776542 1211  112347788888843221111123446678887766 58887643211       2


Q ss_pred             CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          449 VGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       449 ~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.||++++..+|++||++++++|++++.+
T Consensus       395 ~~iRl~~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        395 NVLRILVPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999865

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-34  Score=270.39  Aligned_cols=347  Identities=22%  Similarity=0.292  Sum_probs=255.2

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++.+|.+++ .+|++||||+++   .-+|| .||++.+++.+++.+.+..+.+    +-+.+ ..++++.|.+.
T Consensus        37 ~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Gh-anpev~ral~~q~~k~~hs~~~----~~t~e-av~l~~~l~~~  110 (433)
T KOG1401|consen   37 RYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGH-ANPEVARALAEQAKKLGHSSNG----YFTLE-AVELEEVLSAV  110 (433)
T ss_pred             CCceeeecceeeeeecCCcceeeeeccceeccccCC-CCHHHHHHHHHHHhhheeccCc----cccHH-HHHHHHHHHhc
Confidence            446788999999999 899999999998   78999 6999999999999998764433    22444 88999999999


Q ss_pred             h---CCCCEEEecccHHHHHhhhhhhc---cC------CcEEEEcCCchhHHHhHhhhcC------------CeEEEecC
Q 011567          167 L---GTPDSILYSYGLSTMFSAIPCFC---KK------GDLIVADEGVHWGIQNGLYLSR------------STVVYFKH  222 (483)
Q Consensus       167 ~---g~e~~i~~~sG~~a~~~ai~~~~---~~------gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~  222 (483)
                      .   ..+.+.+++||++|++.|++...   ..      ..+|.+..+||+....++...+            ..+..+.+
T Consensus       111 ~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y  190 (433)
T KOG1401|consen  111 LGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY  190 (433)
T ss_pred             ccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc
Confidence            9   46678888999999999986432   22      2489999999998887776432            24566788


Q ss_pred             CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccc
Q 011567          223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLT  297 (483)
Q Consensus       223 ~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~  297 (483)
                      ||+.++++.++.+..+       +++||+||+++.+|.+++    |..|+++|+++|+++|.||++++  +||+|. |..
T Consensus       191 nd~t~l~k~~~~h~~~-------IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG--~gR~g~~~a~  261 (433)
T KOG1401|consen  191 NDSTALEKLFESHKGE-------IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTG--LGRLGYGWAQ  261 (433)
T ss_pred             CCHHHHHHHHHhCCCc-------eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhC--ccccchHHHH
Confidence            9999999999987654       899999999999777665    89999999999999999999976  445554 456


Q ss_pred             cccCCCCCceeEEEccccccccCCCc----eeeccHHHHHHHHhcCC---ceeecCCCcHHHHHHHHHHHHHHhcCcHHH
Q 011567          298 EHCGVPVDKIDIVTAAMGHALATEGG----FCTGSARVVDHQRLSSS---GYVFSASLPPYLASAAITAIDVLEENPDLI  370 (483)
Q Consensus       298 ~~~~v~~~~~Di~~~s~~K~lg~~GG----~i~~~~~~~~~~~~~~~---~~~fs~~~~p~~~aaa~~al~~l~~~~~~~  370 (483)
                      +++++.|   ||.  |++|.||  ||    ...+++++++.+....+   +.+|++  ||++|+++..+++.+.+ ++..
T Consensus       262 e~~~~~P---DI~--t~aK~L~--gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~g--npLacsa~~~~l~~l~~-~e~~  331 (433)
T KOG1401|consen  262 EYFGVTP---DIT--TVAKPLG--GGLPIGATGVRDKVAEMISPGDHLYHGGTFSG--NPLACSAGIKVLDELKD-PETL  331 (433)
T ss_pred             HHhCcCC---cce--eehhhcc--CCceeEEEeehHHHHhhcCCCCccccCcccCC--ChhhhhHHHHHHHHHcC-HHHH
Confidence            8999998   887  8999998  44    45678999999887666   556655  89999999999999876 5688


Q ss_pred             HHHHHHHHHHHHhhccCC---Cceeec-CCCCCEEEEEecCCCCCchhhHH----HHHHHHHHHHHhCCEEEEeeccccc
Q 011567          371 TKLKKNTAILRTGLSDIH---GLSIAS-NPESPIVFLILEKSTGSMKNDLQ----LLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       371 ~~l~~~~~~l~~~L~~~~---~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~----~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                      +++.+..+.|++.|.+.-   .-.+.+ ..+..++++.+..+.-.......    .........++ .|+++.|..    
T Consensus       332 k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~-~gv~i~P~~----  406 (433)
T KOG1401|consen  332 KNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLE-EGVRIAPIY----  406 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhccccc-ceEEEeccc----
Confidence            899998888888886531   111222 23344555554322111111111    11111111111 144444310    


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                                 .++..+|+|.+++.++++.+.+.++
T Consensus       407 -----------~l~~~~~~E~i~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  407 -----------LLTVEHTPEVIQRLLTILEKVLSAL  431 (433)
T ss_pred             -----------cccccCcHHHHHHHHHHHHHHHHHh
Confidence                       0234467999999999999988765

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1e-33  Score=285.89  Aligned_cols=333  Identities=18%  Similarity=0.222  Sum_probs=248.2

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT  169 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~  169 (483)
                      |.++++++|.|+| .||++||||.++ .++++..||++.+++.+++++++...   .      ..+.++++.+++.+ +.
T Consensus        12 ~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~---~------~~~~~~~~~la~~l~~~   82 (375)
T PRK04260         12 AIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSP---N------LYLNSLQEEVAQKLIGD   82 (375)
T ss_pred             CceEEEeeeCEEEeCCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCccc---C------ccCCHHHHHHHHHHhcC
Confidence            5678999999999 899999999997 56656558999999999998854321   0      12344555666544 32


Q ss_pred             CC--EEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHHHHHHHH
Q 011567          170 PD--SILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDSLRNTL  232 (483)
Q Consensus       170 e~--~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~~Le~~l  232 (483)
                      ..  +++++||++|+..|++..   +++.++|..+..+|+++..++..++.+            +...+++|++++++.+
T Consensus        83 ~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l  162 (375)
T PRK04260         83 KDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALV  162 (375)
T ss_pred             cCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhc
Confidence            23  456699999999887764   677888999999999988777665432            2233578999988876


Q ss_pred             HHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCce
Q 011567          233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKI  307 (483)
Q Consensus       233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~  307 (483)
                      .+          .+++|++|++++++|.+.|    |+++.++|++||+++|+||+|++  +|++|.++. +++++.|   
T Consensus       163 ~~----------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g--~g~~g~~~~~~~~~~~p---  227 (375)
T PRK04260        163 NK----------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTG--MGRTGKLYAFEHYGIEP---  227 (375)
T ss_pred             CC----------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcccchhhhHhhCCCC---
Confidence            32          3689999999999998876    89999999999999999999973  678776643 5778877   


Q ss_pred             eEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          308 DIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       308 Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      |++  ||||++++  +.|++++++++.+.+.......+|  +.+|+.++++.++++.++.. +..++++++.+.+++.|.
T Consensus       228 di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~a~l~~~~~~-~~~~~~~~~~~~~~~~l~  302 (375)
T PRK04260        228 DIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTF--GGNKLSMAAASATLDIMLTA-GFLEQALENGNYLQEQLQ  302 (375)
T ss_pred             CEE--EecccccCCcceEEEEEcHHHHhhcCCCCCCCCC--CcCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence            765  89999973  458888999988887644334444  35899999999999988754 577888888888888776


Q ss_pred             cC-CCce--eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHH
Q 011567          386 DI-HGLS--IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA  462 (483)
Q Consensus       386 ~~-~~~~--i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~e  462 (483)
                      ++ ...+  ......+.++++.+...          ..++.+++++ +||++.+..         +..||++++..+|++
T Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~-~Gi~v~~~~---------~~~lR~~~~~~~t~~  362 (375)
T PRK04260        303 KALQDKETVTTVRGLGYMIGIETTAD----------LSQLVEAARD-KGLIVLTAG---------TNVIRLLPPLTLTKE  362 (375)
T ss_pred             HHHhhCCCeeEEeccceEEEEEecCc----------HHHHHHHHHh-CCCEEecCC---------CCEEEEcCCCccCHH
Confidence            53 1111  11123677788877311          2356776555 599986532         244999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          463 DLVKACESLKRI  474 (483)
Q Consensus       463 di~~~~~~l~~~  474 (483)
                      |+++++++++++
T Consensus       363 ~i~~~l~~l~~~  374 (375)
T PRK04260        363 EIEQGIAILSEV  374 (375)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=3e-33  Score=300.18  Aligned_cols=357  Identities=15%  Similarity=0.140  Sum_probs=252.5

Q ss_pred             CCCccccCCCC----eEE-ECCe----eEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHH
Q 011567           92 EPPVLESAAGP----HTI-ISGK----EVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDC  159 (483)
Q Consensus        92 ~~~~i~~~~g~----~~~-~~G~----~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l  159 (483)
                      .+.+|++++|.    |++ .+|+    +|||++++   ..+||.+||+|.+|+.+|+.+++.-+ .   ...+++...+|
T Consensus       339 ~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~-~---~~~~hepa~~L  414 (817)
T PLN02974        339 SVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVM-F---PENVHEPALRA  414 (817)
T ss_pred             CceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccc-c---CccCCHHHHHH
Confidence            46788999998    888 7998    99999997   66774379999999999999986522 1   12256888999


Q ss_pred             HHHHHhhhCC---CCEEEecccHHHHHhhhhhh----c------------------cCCcEEEEcCCchhHHHhHhhhcC
Q 011567          160 EARIAKFLGT---PDSILYSYGLSTMFSAIPCF----C------------------KKGDLIVADEGVHWGIQNGLYLSR  214 (483)
Q Consensus       160 ~~~La~~~g~---e~~i~~~sG~~a~~~ai~~~----~------------------~~gdiI~~~~~~h~s~~~g~~~s~  214 (483)
                      +++|++..+.   +++++.++|++|++.|++..    +                  +|..+|....+||+.+..++.+++
T Consensus       415 Ae~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg  494 (817)
T PLN02974        415 AELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQA  494 (817)
T ss_pred             HHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCC
Confidence            9999997652   45666699999999997643    2                  245689999999999888877665


Q ss_pred             Ce--------E------EEecC----------------C--C-----------------------------HHHHHHHHH
Q 011567          215 ST--------V------VYFKH----------------N--D-----------------------------MDSLRNTLE  233 (483)
Q Consensus       215 ~~--------v------~~~~~----------------~--d-----------------------------~~~Le~~l~  233 (483)
                      ..        .      .+++.                +  +                             .+.+++.|+
T Consensus       495 ~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~  574 (817)
T PLN02974        495 PSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLD  574 (817)
T ss_pred             chhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence            21        0      00100                0  0                             023444443


Q ss_pred             HhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCce
Q 011567          234 RVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKI  307 (483)
Q Consensus       234 ~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~  307 (483)
                      +...  ...+.++++|++||+ ++.+|.+.|    +++|+++|++||++||+||++++  +||+|+++ ++++|+.|   
T Consensus       575 ~~~~--~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TG--fGRtG~~fa~e~~gv~P---  647 (817)
T PLN02974        575 EYEA--SAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTG--LWRLGVESAWELLGCKP---  647 (817)
T ss_pred             hhcc--ccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccC--CCcccchhhHHhcCCCC---
Confidence            2110  012346899999996 787787766    89999999999999999999986  57777766 48999998   


Q ss_pred             eEEEccccccccCCCce-----eeccHHHHHHHHhc------CCceeecCCCcHHHHHHHHHHHHHHhcCc---HHHHHH
Q 011567          308 DIVTAAMGHALATEGGF-----CTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLEENP---DLITKL  373 (483)
Q Consensus       308 Di~~~s~~K~lg~~GG~-----i~~~~~~~~~~~~~------~~~~~fs~~~~p~~~aaa~~al~~l~~~~---~~~~~l  373 (483)
                      ||+  +++|+++  |||     +++++++++.+...      .++++|+  .||+.|++++++|+++++.+   .+.++.
T Consensus       648 DIi--~~gKgLt--gG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~--gnpl~cAaala~L~~~~~~~~~~~l~~~~  721 (817)
T PLN02974        648 DIA--CYAKLLT--GGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYT--AHPMGCAAAAKALQWYKDPSTNPNLIPPG  721 (817)
T ss_pred             CEE--eeccccc--CCCCccEEEEEcHHHHHhhccccccCCcccCCCCC--cCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            898  7999998  664     57899999987421      2444554  59999999999999998753   344555


Q ss_pred             HHHHHHHHHhh-ccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCc
Q 011567          374 KKNTAILRTGL-SDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG  450 (483)
Q Consensus       374 ~~~~~~l~~~L-~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~  450 (483)
                      .++.+++.+.| +.+..++.+.  ...+.+..+.+.++............++.+.++.++|+++++..          +.
T Consensus       722 ~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G----------nv  791 (817)
T PLN02974        722 SRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG----------NV  791 (817)
T ss_pred             HHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC----------CE
Confidence            55555556555 2222222211  34577888888643221111223456777777625699998642          22


Q ss_pred             eEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          451 IRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       451 lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ||+.+++.+++++++++++++.+.+
T Consensus       792 i~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        792 VYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            8999999999999999999998765

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=3.8e-33  Score=282.58  Aligned_cols=338  Identities=21%  Similarity=0.321  Sum_probs=253.4

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeec---CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFAS---ANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s---~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      +.|.++++++|.+++ .||++||||++   +++||+ .+|.+.+++.+++++++..   ++ .| ..+.+.+|+++++++
T Consensus         8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~-~~-~~~~~~~l~~~la~~   81 (379)
T TIGR00707         8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHV---SN-LY-YTEPQEELAEKLVEH   81 (379)
T ss_pred             CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccc---cc-cc-CCHHHHHHHHHHHhh
Confidence            357789999999999 79999999999   489999 8999999999999986431   11 12 457899999999999


Q ss_pred             hCCCCEEEecccHHHHHhhhhhh---cc-----CCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHH
Q 011567          167 LGTPDSILYSYGLSTMFSAIPCF---CK-----KGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD  226 (483)
Q Consensus       167 ~g~e~~i~~~sG~~a~~~ai~~~---~~-----~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~  226 (483)
                      +|.++++++++|++|+..+++++   ++     +..+|+.+..||+....+...++            .....+++||++
T Consensus        82 ~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (379)
T TIGR00707        82 SGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIE  161 (379)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHH
Confidence            99998899999999999998755   33     24456667778876555443322            123456778999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc-C---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA-P---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~-~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      ++++.+.+          .+++|+++|+++++|... +   +++|.++|++||+++|+||+|+.  +|++|.+.. ...+
T Consensus       162 ~l~~~~~~----------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~--~~~~g~~~~~~~~~  229 (379)
T TIGR00707       162 SLKKAIDD----------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG--IGRTGKFFAYEHYG  229 (379)
T ss_pred             HHHHHhhh----------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhhhHHhcC
Confidence            99887753          257888899988877653 3   89999999999999999999973  455555443 4556


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.+   |++  |+||++++  +.||+++++++++.++.......|+  .+|+.++++.++|+.++. ++..+++++++++
T Consensus       230 ~~~---d~~--t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~aa~aaL~~~~~-~~~~~~~~~~~~~  301 (379)
T TIGR00707       230 IEP---DII--TLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFG--GNPLACAAALAVLEVIEK-ERLLENVKEKGDY  301 (379)
T ss_pred             CCC---CEE--EEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCC--CCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence            655   665  79999982  2388999999999887544444454  588999999999998764 3578899999999


Q ss_pred             HHHhhccCCCcee--e-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDIHGLSI--A-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~~~~~i--~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +++.|.++ +...  . ..+.+.++++.+.++          ..++.+.+ .++||.+.+..         ++.+|++++
T Consensus       302 ~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l-~~~Gv~v~~~~---------~~~lRi~~~  360 (379)
T TIGR00707       302 FKERLEEL-GKNYPNKEVRGKGLMLGIELEAP----------CKDIVKKA-LEKGLLVNCAG---------PKVLRFLPP  360 (379)
T ss_pred             HHHHHHHH-HhhCCCCccccCceEEEEEecCc----------HHHHHHHH-HHCCcEEeeCC---------CCEEEEECC
Confidence            99988764 2211  1 123466777776421          23566664 45699998742         134999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRIS  475 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+|++++++++++|++++
T Consensus       361 ~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       361 LIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             CcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998763

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=100.00  E-value=5e-33  Score=275.99  Aligned_cols=309  Identities=16%  Similarity=0.219  Sum_probs=236.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHhhhhhhccCCc
Q 011567          117 ANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFSAIPCFCKKGD  194 (483)
Q Consensus       117 ~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ai~~~~~~gd  194 (483)
                      +||||++.||.+++++.+.+++||          |+.+.|.+|++.+|+++|.  ++++++++|++|+..++.++.++||
T Consensus        27 ~~ylgl~~~~~~~~~~~~~~~~~~----------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd   96 (346)
T TIGR03576        27 YDLTGLAGGFKIDEEDLELLETYV----------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGR   96 (346)
T ss_pred             cccccCCCChhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCC
Confidence            589999999999999999999984          4668999999999999998  7889999999999999999999999


Q ss_pred             EEEE---cCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc---cChHHHH
Q 011567          195 LIVA---DEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI---APLDELI  268 (483)
Q Consensus       195 iI~~---~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i---~~L~~l~  268 (483)
                      .|++   |.++|.++..+++++|.+++  .++|+++++    .. .       .+++|++++ ++++|++   .||++|+
T Consensus        97 ~Vli~~~d~p~~~s~~~~~~l~ga~~~--~~~~l~~l~----~~-~-------~~~lIiitg-~s~~G~v~~~~~L~~i~  161 (346)
T TIGR03576        97 KVVHYLPEKPAHPSIPRSCKLAGAEYF--ESDELSELK----KI-D-------GTSLVVITG-STMDLKVVSEEDLKRVI  161 (346)
T ss_pred             EEEECCCCCCCchhHHHHHHHcCCEEe--ccCCHHHHh----hC-c-------CceEEEEEC-CCCCCcccCHHHHHHHH
Confidence            8874   47899999999999998763  456665532    21 1       245667766 5788998   5799999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccHHHHHHHHhcCCceeecCC
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGYVFSAS  347 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~~~~~~~~~~~~~fs~~  347 (483)
                      ++|++||+++++||+|+.|+.|..|.+...+++     +|++++|+||++ |..|||+++++++++.++....++.|+  
T Consensus       162 ~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~-----~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~s--  234 (346)
T TIGR03576       162 KQAKSKEAIVLVDDASGARVRRLYGQPPALDLG-----ADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGLE--  234 (346)
T ss_pred             HHHHHcCCEEEEECCccccccccCCCCCHHHcC-----CcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCcccC--
Confidence            999999999999999998876654555443333     378899999999 678999999999999999888888776  


Q ss_pred             CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHH
Q 011567          348 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWAL  427 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l  427 (483)
                      .+|..++++.++|+.+.. +...+.++++.+.+.+.++.+   .+... ..+++++.+...      +   ..+.+.++|
T Consensus       235 ~~~~~~~aa~~aL~~~~~-~~~~~~l~~r~~~~~~~l~~~---~~~~~-~~~f~~~~~~~~------~---~~~~~~~ll  300 (346)
T TIGR03576       235 AQAPLLAAVVRALEEFEL-SRIRDAFKRKEEVYLRLFDKL---NVERT-PTGFVIKGVEEE------K---LIEIGLDLL  300 (346)
T ss_pred             ccHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhC---CCCcC-CCeEEEEeCCCC------C---HHHHHHHHH
Confidence            366677888889876543 456788888888888877643   33322 444666666321      0   123455678


Q ss_pred             HhCCEEEEeecccccccCCCCCceEEEccCCC-CHHHHHHHHHHHHHHH
Q 011567          428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH-SEADLVKACESLKRIS  475 (483)
Q Consensus       428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~-t~edi~~~~~~l~~~~  475 (483)
                      +++||.+.+.....    ..+..+||++.... ++.++++++++|++.+
T Consensus       301 ~~~gV~v~~~~~f~----~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       301 RNYGIITITAVGMP----GASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HhCCEEEeCCcccC----CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            88899999754221    01244999986322 2227999999998764

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=100.00  E-value=2.5e-32  Score=278.10  Aligned_cols=335  Identities=18%  Similarity=0.212  Sum_probs=245.0

Q ss_pred             eEEEee-cCCCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHHH----HHHhhhCCCCEEE-ecccHHHH
Q 011567          110 EVVNFA-SANYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCEA----RIAKFLGTPDSIL-YSYGLSTM  182 (483)
Q Consensus       110 ~~id~~-s~~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~~----~La~~~g~e~~i~-~~sG~~a~  182 (483)
                      +.||+. |+||+    +|++++++...+ .+||.|++|+|.+.| .+.+.+||+    ++++++|.+.+++ ++||+.|+
T Consensus        29 ~~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~  103 (416)
T PRK13034         29 DHLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQAN  103 (416)
T ss_pred             cCeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHH
Confidence            455554 55885    799999999995 999999999999988 588999999    9999999999966 58999999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhH-HHhHhhhc--CCeE--EEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWG-IQNGLYLS--RSTV--VYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s-~~~g~~~s--~~~v--~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ..++.+++++||.|+++...|++ +..|+..+  +...  ..+++      .|++++++.++..         ++++|++
T Consensus       104 ~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---------~~klVi~  174 (416)
T PRK13034        104 GAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH---------KPKLIIA  174 (416)
T ss_pred             HHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhc---------CCeEEEE
Confidence            99999999999999999999988 55566543  2222  35555      6899999887542         1467777


Q ss_pred             -ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccH
Q 011567          252 -EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA  329 (483)
Q Consensus       252 -e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~  329 (483)
                       ++++   |...|+++|.++|++||++||+|++|++|.++. |  .  +.+. ...+|++++|++|++ |+.||++++++
T Consensus       175 ~~~~~---g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~-g--~--~~~~-~~~~Di~~~s~~K~l~g~~GG~v~~~~  245 (416)
T PRK13034        175 GFSAY---PRELDFARFREIADEVGALLMVDMAHIAGLVAA-G--E--HPNP-FPHAHVVTTTTHKTLRGPRGGMILTND  245 (416)
T ss_pred             CCCcc---ccccCHHHHHHHHHHcCCEEEEeCcccccCccc-C--C--CCCC-CCCceEEEEeCcccCCCCCCeEEEECc
Confidence             4544   677789999999999999999999999988763 2  2  1221 134799999999999 57789887765


Q ss_pred             HHH-HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEec
Q 011567          330 RVV-DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILE  406 (483)
Q Consensus       330 ~~~-~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~  406 (483)
                      +.+ +.++........+...+|..++++.+.++.+.. .++.++++++++++|++.|.+. |+++..+ .+++++.+.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~  324 (416)
T PRK13034        246 EEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLR  324 (416)
T ss_pred             HHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcC
Confidence            544 434332111112334556666655566666533 2456899999999999999887 9887642 57899999885


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccC----CCCHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSA----AHSEADLVKACESLKRISA  476 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~  476 (483)
                      +...    .   ...+.+ .|++.||++.....|.. .....+.+||+++++    .+|++|+++++++|++++.
T Consensus       325 ~~~~----~---~~~~~~-~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        325 PKGL----S---GKDAEQ-ALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             CCCC----C---HHHHHH-HHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            4321    1   112333 46667999986332221 000124579999888    8899999999999998876

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=6e-32  Score=272.35  Aligned_cols=328  Identities=16%  Similarity=0.138  Sum_probs=241.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccCh-----HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTI-----DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~-----~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      -.+.+++.+++++||.|++++|...|+.     +...++++.+|+++|.+.++++++|++++..++.++.++||.|+++.
T Consensus        18 g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~   97 (370)
T TIGR02539        18 GVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDG   97 (370)
T ss_pred             CCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECC
Confidence            4688999999999999998888766655     35667888899999999999999999999999999999999999999


Q ss_pred             CchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          201 GVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       201 ~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      ..|+++..+++..|.+++.++++       |+++|++.+++....   ....+++|+++++++++|.+.|+++|.++|++
T Consensus        98 ~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~  174 (370)
T TIGR02539        98 LAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDE---SGKPPVLALLTHVDGEYGNLPDAGKVAKVCRE  174 (370)
T ss_pred             cccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhc---cCCCcEEEEEECCCCCCccccCHHHHHHHHHH
Confidence            99999999999999999999986       899999888653211   00136788888899999999999999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHHHhcCCceeecC-----
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSSSGYVFSA-----  346 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~~~~~fs~-----  346 (483)
                      ||+++|+||+|+.|.++..+..         .++|++++|++|++++.|  ||+++++++++.++....+|.++.     
T Consensus       175 ~~~~livDea~~~g~~~~~~~~---------~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~  245 (370)
T TIGR02539       175 KGVPLLLNCAYTVGRMPVSAKE---------IGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLG  245 (370)
T ss_pred             cCCeEEEECccccCCcCCCHHH---------cCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeec
Confidence            9999999999998765432211         235899999999998766  999999999998877665554422     


Q ss_pred             -CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHH
Q 011567          347 -SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIA  423 (483)
Q Consensus       347 -~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~  423 (483)
                       +.++..++++.++++...+.-+...+..++.+++++.|+++ |+++.  .+..++++.+.++........+......+.
T Consensus       246 ~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~  324 (370)
T TIGR02539       246 CTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLY  324 (370)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHH
Confidence             11122344445566543322122344455567899999987 88763  245688888776321000001111234566


Q ss_pred             HHHHHhCCEE-EEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          424 DWALKEDGVF-VVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       424 ~~~l~~~Gv~-v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.+ .++||+ +++.    .     +..||+++. .+|++|+++++++|++++++
T Consensus       325 ~~L-~e~GI~~ir~~----~-----~~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       325 EEL-KKRGIHGIRSG----Q-----TKYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             HHH-HhCCCccccCC----c-----ceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence            654 456997 4421    1     234999984 68999999999999988764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=1.9e-32  Score=271.56  Aligned_cols=288  Identities=24%  Similarity=0.338  Sum_probs=218.1

Q ss_pred             ccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh--C
Q 011567           95 VLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL--G  168 (483)
Q Consensus        95 ~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~--g  168 (483)
                      +|++++|.|+| .||++|+||+++   ..+|| +||++.+++.+++.+....+ .   ...+++...+|.++|++.+  +
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh-~~p~i~~ai~~~~~~~~~~~-~---~~~~~~~~~~la~~L~~~~p~~   75 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGH-NHPEIAEAIAEQANKLNYVS-F---SGFTHPEAAELAEKLAELFPGG   75 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-B-T-HHHHHHHHHHHHHCSSCS-T---TTSEEHHHHHHHHHHHHHSSTT
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCC-CccccchhHHHHhhhccccc-c---cceeccchhhhhhhhhhccccc
Confidence            47899999999 899999999986   78999 89999999999999854322 1   1224678899999999999  4


Q ss_pred             CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHHH
Q 011567          169 TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMDS  227 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~~  227 (483)
                      .+.+.+.+||++|++.|++..         ++|..+|.+...||+.+...+.+++            ..+..++++|...
T Consensus        76 ~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~  155 (339)
T PF00202_consen   76 LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA  155 (339)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH
T ss_pred             cceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch
Confidence            566777799999999997543         4788899999999998776666543            2345677777665


Q ss_pred             ----------HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          228 ----------LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       228 ----------Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                                +++.+.+...      ..+++|++||+++.+|.+.|    |++|+++|+|||+++|+||++++  +|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~------~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG--~gRtG  227 (339)
T PF00202_consen  156 DEEEQACLNALEELIAALNA------DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTG--FGRTG  227 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG------GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTT--TTTTS
T ss_pred             hhhHHHHHHHHHHHHHhhcC------CcEEEEEEeccccccCccccccchhhehcccccccccceeccccccc--ccccC
Confidence                      3333333222      25899999999999887765    89999999999999999999986  56777


Q ss_pred             Ccc-ccccCCCCCceeEEEccccccccCCCc----eeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcH
Q 011567          294 RGL-TEHCGVPVDKIDIVTAAMGHALATEGG----FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPD  368 (483)
Q Consensus       294 ~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG----~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~  368 (483)
                      .++ .+++++.|   ||+  +++|+++  ||    .+++++++++.+....++.+|+  .+|+.|+++.++|+.+++.+ 
T Consensus       228 ~~~a~~~~gv~P---Div--~~gK~l~--gG~p~sav~~~~~i~~~~~~~~~~~T~~--g~p~~~aaa~~~l~~~~~~~-  297 (339)
T PF00202_consen  228 KFFASEHYGVDP---DIV--TFGKGLG--GGLPISAVLGSEEIMEAFQPGSHGSTFG--GNPLSCAAALATLEILEEED-  297 (339)
T ss_dssp             SSSGHHHHTSSS---SEE--EEEGGGG--TTSSEEEEEEEHHHHTTSCTTSSTCTTT--T-HHHHHHHHHHHHHHHHTT-
T ss_pred             CccceecccccC---ccc--ccccchh--hhhhcccccccchhhccccccccccccc--cchHhhhhhhhHHHhhccHH-
Confidence            655 48899998   898  6899997  44    4678899998876655555554  58999999999999998854 


Q ss_pred             HHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEe
Q 011567          369 LITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLIL  405 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l  405 (483)
                      +.+++++..++|++.|+++.   ++.......+.++.+.+
T Consensus       298 ~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~~ie~  337 (339)
T PF00202_consen  298 LLERVRELGERLREGLRELAARYPLIGEVRGIGLMIGIEL  337 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeCeEEEEEE
Confidence            88999999999999987652   22111123466666655

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.97  E-value=5e-29  Score=255.95  Aligned_cols=336  Identities=17%  Similarity=0.179  Sum_probs=248.2

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHHH----HHHhhhCCC-CEEEe----ccc
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCEA----RIAKFLGTP-DSILY----SYG  178 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~~----~La~~~g~e-~~i~~----~sG  178 (483)
                      +.|++..+ |+    ..|.+.++....+ .+|+.|++|.|.+.|+. .+.++|+    +..+.|+.+ ..+.+    +||
T Consensus        35 ~~l~liasen~----~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG  109 (475)
T PLN03226         35 KGLELIASENF----TSRAVMEALGSCLTNKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPEKWGVNVQPLSG  109 (475)
T ss_pred             cCeeEecCCcc----CCHHHHHHHhhHHhccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcceeEEecCcCch
Confidence            56777655 66    5689999999999 88999999999888876 7788876    344455544 45545    899


Q ss_pred             HHHHHhhhhhhccCCcEEEEcC------CchhHHHhHhhhcCCeEE----EecCC------CHHHHHHHHHHhhhhhhhc
Q 011567          179 LSTMFSAIPCFCKKGDLIVADE------GVHWGIQNGLYLSRSTVV----YFKHN------DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~------~~h~s~~~g~~~s~~~v~----~~~~~------d~~~Le~~l~~~~~~~~~~  242 (483)
                      +.||.+++.+++++||.|+.++      ..|.+...+.++++....    .|+||      |+++|++.+.+..      
T Consensus       110 ~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~------  183 (475)
T PLN03226        110 SPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFR------  183 (475)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcC------
Confidence            9999999999999999999854      566677777777766544    67788      9999999886532      


Q ss_pred             cCccEEEEE-ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cC
Q 011567          243 KKLRRYIVV-EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-AT  320 (483)
Q Consensus       243 ~~~~~~iv~-e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~  320 (483)
                         +++|++ +++|   |...|+++|+++|++||++|++|++|+.|+++..+..  ..+    +.+|++++|++|+| |+
T Consensus       184 ---pklIv~~~S~~---s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p~----~~~Div~~t~hK~L~GP  251 (475)
T PLN03226        184 ---PKLIIAGASAY---PRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA--SPF----EYCDVVTTTTHKSLRGP  251 (475)
T ss_pred             ---CeEEEEecCcC---CCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CCC----CCCeEEEecCcccccCC
Confidence               344554 6555   5666789999999999999999999999988764322  112    35799999999999 78


Q ss_pred             CCceeeccHHHH-----------HH--HHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhc
Q 011567          321 EGGFCTGSARVV-----------DH--QRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       321 ~GG~i~~~~~~~-----------~~--~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~  385 (483)
                      .||+++++++..           +.  .........|++++++..+++..++++.+.+.  ++..+++.+++++|++.|.
T Consensus       252 ~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~  331 (475)
T PLN03226        252 RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLM  331 (475)
T ss_pred             CceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            899998887544           33  22323334567777788888888899988643  4578999999999999998


Q ss_pred             cCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEE----EccCCCC
Q 011567          386 DIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL----FVSAAHS  460 (483)
Q Consensus       386 ~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi----~~~~~~t  460 (483)
                      + .|+++.+. .+++++.+.+... +.   +.   .++ ...|++.||.+.....|.......|++||+    ..+..++
T Consensus       332 ~-~G~~l~~~~t~~hi~lv~~~~~-gi---~~---~~~-~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~  402 (475)
T PLN03226        332 S-KGYKLVTGGTDNHLVLWDLRPL-GL---TG---SRV-EKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLV  402 (475)
T ss_pred             h-CCCEEEcCCCCCCEEEEEccCC-CC---CH---HHH-HHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCC
Confidence            8 49998753 3467777776332 11   11   123 335677799987654332211123678998    6778899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAV  477 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~  477 (483)
                      ++|++++++.|.++++.
T Consensus       403 ~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        403 EKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999874

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.97  E-value=1.1e-28  Score=249.90  Aligned_cols=346  Identities=14%  Similarity=0.140  Sum_probs=242.3

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~  188 (483)
                      ++||+---.-+|. ..+.+.+|+.+....++.. ++..+...+..+.+.++++.+|+++|.++++++++|++++..++.+
T Consensus        19 ~~~~~~~~~~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~   97 (387)
T PRK09331         19 EFINLDPIQRGGI-LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHS   97 (387)
T ss_pred             cccccChhhcCCC-CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHH
Confidence            4444433334555 4566777766665443221 1122444555678999999999999999999999999999999999


Q ss_pred             hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      ++++||.|+++...|++...++...|.+++.+++       .|++++++.+++....   ....+++|+++++++++|.+
T Consensus        98 l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~~lV~l~~~~~~tG~~  174 (387)
T PRK09331         98 LCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEE---TGKPPALALLTHVDGNYGNL  174 (387)
T ss_pred             hcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhc---cCCCCEEEEEECCCCCCccc
Confidence            9999999999999999999999999999988876       3688898888653110   01136788889999999999


Q ss_pred             cChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC--CceeeccHHHHHHHHhcC
Q 011567          262 APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE--GGFCTGSARVVDHQRLSS  339 (483)
Q Consensus       262 ~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~~~~~~~~~~~~  339 (483)
                      .|+++|.++|++||+++|+|++|+.|.++..+.    .     .++|++++|++|++++.  +||+++++++++.++...
T Consensus       175 ~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~----~-----~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~  245 (387)
T PRK09331        175 ADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGK----K-----LGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTS  245 (387)
T ss_pred             ccHHHHHHHHHHcCCEEEEECCcccCCcCCCHH----H-----cCCCEEEeeCcccccCCCCEEEEEECHHHHhhccccc
Confidence            999999999999999999999999876543221    1     23489999999999743  389999999888765543


Q ss_pred             Ccee------ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC--CCCCEEEEEecCCCCC
Q 011567          340 SGYV------FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN--PESPIVFLILEKSTGS  411 (483)
Q Consensus       340 ~~~~------fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~i~~l~l~~~~~~  411 (483)
                      .+|.      |+++.++..++++.++++.+.+..+.+++..++.+++++.|++++|+++...  ..++++.+..+.....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~  325 (387)
T PRK09331        246 RKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEI  325 (387)
T ss_pred             CCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHH
Confidence            3331      3434444445555667766554444667778889999999999889988742  2456666654310000


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..........+.+.+ +++||...+...         ..+|...+..+|++|+++++++|++++++.
T Consensus       326 ~~~~~~~~~~~~~~L-~~~gI~~~~~~~---------~~i~ri~~~g~t~~di~~l~~aL~~i~~~~  382 (387)
T PRK09331        326 AKKHKRRGFFLYEEL-KKRGIHGIKPGA---------TKEFKLSTYGLTWEQVEYVADAFKEIAEKY  382 (387)
T ss_pred             hhhccccchhHHHHH-HHcCceEEccCC---------ceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence            000111123566654 456997432211         224444555689999999999999987764

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.97  E-value=1.4e-28  Score=247.92  Aligned_cols=341  Identities=16%  Similarity=0.202  Sum_probs=244.7

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccCh--H-HHHHHHHHHHhhhCCCCEEEe-cccHHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--D-VHLDCEARIAKFLGTPDSILY-SYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~--~-~~~~l~~~La~~~g~e~~i~~-~sG~~a~  182 (483)
                      ++.|++..+ |+    ..|.+.++....+. +|..|..|.|.+.|+.  | +..-..++..++||.+.+-+- -||+.||
T Consensus        49 ~~~l~LiasEN~----~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An  124 (493)
T PRK13580         49 RSSLKLIASENY----SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADAN  124 (493)
T ss_pred             hcCceEeccccc----CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHH
Confidence            356777665 66    55788888777665 5888888888655553  2 223344566677898876544 8999999


Q ss_pred             HhhhhhhccC-------------------------------CcEEEEcCCchhH---HHhHhhhcC--CeEEEecC----
Q 011567          183 FSAIPCFCKK-------------------------------GDLIVADEGVHWG---IQNGLYLSR--STVVYFKH----  222 (483)
Q Consensus       183 ~~ai~~~~~~-------------------------------gdiI~~~~~~h~s---~~~g~~~s~--~~v~~~~~----  222 (483)
                      ..+..++.++                               ||.|+.-...|+.   .......++  ...+.++.    
T Consensus       125 ~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~  204 (493)
T PRK13580        125 LVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDT  204 (493)
T ss_pred             HHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCccc
Confidence            9999998876                               7887765444322   111112222  22333322    


Q ss_pred             --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                        -|++++++.+.+.          +..|++.+..+. |...|+++|+++|++||+++++|++|+.|++|  |.+..+++
T Consensus       205 g~iD~d~l~~~~~~~----------~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Glig--g~~~~~~~  271 (493)
T PRK13580        205 GLLDYDEIAALAREF----------KPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVA--GKVFTGDE  271 (493)
T ss_pred             CccCHHHHHHHHhhc----------CCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceec--cccchhhc
Confidence              2778888877652          345555566655 55789999999999999999999999999987  34433333


Q ss_pred             CCCCCceeEEEccccccc-cCCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTA  378 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~  378 (483)
                      +.. ..+|++++|++|+| |+.||++++++++.+.+. .+.++.|+++++|..++++.+..+.... .++.++++.+|++
T Consensus       272 ~~~-~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~-~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~  349 (493)
T PRK13580        272 DPV-PHADIVTTTTHKTLRGPRGGLVLAKKEYADAVD-KGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNAR  349 (493)
T ss_pred             CCC-CCCcEEEeCChhhccCCCeEEEEecHHHHHHHh-hCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            322 46799999999999 788999999999999885 4458999999889777777654444332 2458999999999


Q ss_pred             HHHHhhccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC-CCCceEEEcc
Q 011567          379 ILRTGLSDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR-LPVGIRLFVS  456 (483)
Q Consensus       379 ~l~~~L~~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~-~~~~lRi~~~  456 (483)
                      +|++.|.+. |+++.. ..+++++.+.+.+.        ....+.+.+.|++.||++....+|.++... .+.+|||+++
T Consensus       350 ~La~~L~~~-G~~vv~ggTdshIV~V~lg~~--------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~  420 (493)
T PRK13580        350 ALAEGFLKR-GARLVTGGTDNHLVLIDVTSF--------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTP  420 (493)
T ss_pred             HHHHHHHhc-CCCccCCCCCCCEEEEEeCCH--------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccc
Confidence            999999986 988753 35789999998431        222333444566779999999888876542 2467999998


Q ss_pred             C----CCCHHHHHHHHHHHHHHHHH
Q 011567          457 A----AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       457 ~----~~t~edi~~~~~~l~~~~~~  477 (483)
                      +    .++++|++++++.|.++++.
T Consensus       421 A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        421 ALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             hhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            8    66899999999999988864

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.96  E-value=1.6e-28  Score=247.21  Aligned_cols=335  Identities=22%  Similarity=0.298  Sum_probs=243.9

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCC-EEEecccHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPD-SILYSYGLST  181 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~-~i~~~sG~~a  181 (483)
                      ++|||+++++.+...+|.+.+++.+..+  +.........|+....+.+|++.+|++++       ..+ .+++++|+.+
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIR--GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHH--HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHH--HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            5899999988777667666666665554  11112223356666778999999999998       234 7888888766


Q ss_pred             HH-hhhhhh-ccCCcEEEEcCCchhHHHhHhhhcCCeEEEec-------CCCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          182 MF-SAIPCF-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK-------HNDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       182 ~~-~ai~~~-~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~-------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      .. .+...+ .+++|.|+++.++|..+...++..|.+++.++       +.|+++|++.+++...+.    .++++|++.
T Consensus        80 ~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~----~~~~~v~~~  155 (363)
T PF00155_consen   80 ALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG----PRPKAVLIC  155 (363)
T ss_dssp             HHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT----ETEEEEEEE
T ss_pred             chhhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc----cccceeeec
Confidence            55 445666 57999999999999999999999999999888       669999999998754331    025788888


Q ss_pred             cccCCCCCccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      ++++++|...+.   ++|+++|++||+++|+||+|+.+..+..+.+.. ...+......+++.|+||++|..|   ||++
T Consensus       156 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~  234 (363)
T PF00155_consen  156 NPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPI-RSLLDEDDNVIVVGSLSKSFGLPGLRVGYIV  234 (363)
T ss_dssp             SSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHH-HGHHTTTSTEEEEEESTTTTTSGGGTEEEEE
T ss_pred             ccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcc-cccccccccceeeeecccccccccccccccc
Confidence            999999999985   555555999999999999999887775422211 122221222688999999999888   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEE
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF  402 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~----~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~  402 (483)
                      +++++++.++.....+..    +.....++.+.+....    ...+.+++++++.+++.+.|++. ++.+..+..+.+++
T Consensus       235 ~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~  309 (363)
T PF00155_consen  235 APPELIERLRRFQRSGLS----SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLW  309 (363)
T ss_dssp             EEHHHHHHHHHHHHHTTS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEE
T ss_pred             chhhhhhhhhhccccccc----cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEE
Confidence            999999988765444333    3333433333433222    33568889999999999999887 88888665666666


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      +.+..         ....++.+.++++.||.+.++.++..     +..+|+++ +.++++++++++++|
T Consensus       310 ~~~~~---------~~~~~l~~~L~~~~gi~v~pg~~~~~-----~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  310 VRLDP---------NDAEELAQELLEEYGILVRPGSYFGV-----PGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             EEESH---------HHHHHHHHHHHHHHTEEEEEGGGGTS-----TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             EEccc---------chHHHHHHHHHHhCCEEEEecCCCCC-----CCEEEEEe-ccCCHHHHHHHHhhC
Confidence            66631         13456788777766999999877654     45699999 889999999999875

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.96  E-value=3.8e-28  Score=221.33  Aligned_cols=362  Identities=15%  Similarity=0.152  Sum_probs=265.0

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-  167 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-  167 (483)
                      ..|..|.+++|.|++ .+|.+|||..++ ...|| .||++.+|..+++...   +|..|..   ++-..+.++.|..-+ 
T Consensus        28 sDP~kivRaq~QYmfDE~g~~yLDCInNVaHvgh-chp~VV~A~~kQmat~---~tN~RFl---hd~lv~cA~~l~stlP  100 (452)
T KOG1403|consen   28 SDPLKIVRAQGQYMFDEEGTRYLDCINNVAHVGH-CHPEVVRAGAKQMATI---STNNRFL---HDELVQCARTLTSTLP  100 (452)
T ss_pred             CCchhhehhccceeeccCcccHHHHhhhhhhccc-CCHHHHHHHHHHHhHh---cccchhh---HHHHHHHHHHHhhcCC
Confidence            347779999999999 799999999998 67788 8999999999998764   4444432   343444555555444 


Q ss_pred             CCCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC---------e--EEEe-c-----------
Q 011567          168 GTPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS---------T--VVYF-K-----------  221 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~---------~--v~~~-~-----------  221 (483)
                      +..-+++++||++||..|++   .|++..|.|..|..||+.+..-+.+|--         +  .+.+ |           
T Consensus       101 eLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~  180 (452)
T KOG1403|consen  101 ELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD  180 (452)
T ss_pred             CceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence            45566777999999999975   5889999999999999887765554421         1  1110 1           


Q ss_pred             -CC---C-----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcc-ccc
Q 011567          222 -HN---D-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESN-SFG  287 (483)
Q Consensus       222 -~~---d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~-s~g  287 (483)
                       ++   |     .++++++++....    +...+++++.|..++-+|.+.|    .+++.+..+.+|-+.|.||++ +||
T Consensus       181 ~~~~~a~~~~~Yad~vk~I~~d~~~----~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFG  256 (452)
T KOG1403|consen  181 KMYPDADMGALYADPVKEICQDQLA----KGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFG  256 (452)
T ss_pred             ccCCcccchhhhhhHHHHHHHHHHh----cCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhccc
Confidence             11   2     2345566654432    2335788999999999999887    799999999999999999998 566


Q ss_pred             cccCCCCccccccCCCCCceeEEEcccccccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      +.|+ .-|..+.++.-|   ||+  +|+|.+|  -+-+.++.++++.+.+...+..|.-+.+.||.+||++++.++.+++
T Consensus       257 RvG~-hyWafq~y~fiP---DIV--tmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~  330 (452)
T KOG1403|consen  257 RVGS-HYWAFQTYNFIP---DIV--TMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCED  330 (452)
T ss_pred             ccch-hhhhhhhhcccc---chh--eecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhh
Confidence            6654 234456778777   888  8999998  2225578899999999877777755556799999999999999886


Q ss_pred             CcHHHHHHHHHHHHHHHhhccCC-CceeecCCC--CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567          366 NPDLITKLKKNTAILRTGLSDIH-GLSIASNPE--SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L~~~~-~~~i~~~~~--~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                      + +++++.++.+++|...|.++. ..++.++.+  +.++.+.+-.+......+...+..++.++-+.++|++.....-  
T Consensus       331 E-~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh--  407 (452)
T KOG1403|consen  331 E-NLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPH--  407 (452)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCC--
Confidence            5 589999999998888886652 455555433  4566666644433334455566677777666678998754210  


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                           ..-|+|-|+...++++.++++..|++++.-
T Consensus       408 -----~NilKiKPPmCFneena~e~v~~ld~iLT~  437 (452)
T KOG1403|consen  408 -----RNILKIKPPMCFNEENADEFVLGLDEILTV  437 (452)
T ss_pred             -----CceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence                 123899999999999999999999998863

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=2.7e-26  Score=230.81  Aligned_cols=329  Identities=15%  Similarity=0.152  Sum_probs=225.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccC-----hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEc
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGT-----IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD  199 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~-----~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~  199 (483)
                      ...+.+++.+++.+||.++++|+...+.     .+...++++++++++|.++++++++|++++..++.++.++||.|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~   89 (361)
T cd06452          10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVD   89 (361)
T ss_pred             CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEc
Confidence            3467788889999999888777653332     25688999999999999888888888899999999999999999999


Q ss_pred             CCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          200 EGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       200 ~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      ...|++...++...|.+++.++.+       |++++++.+++...+   ...++++|++.++++++|.+.|+++|.++|+
T Consensus        90 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~  166 (361)
T cd06452          90 GLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDE---FGKPPALALLTHVDGNYGNLHDAKKIAKVCH  166 (361)
T ss_pred             CCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhc---cCCCceEEEEECCCCCCeeeccHHHHHHHHH
Confidence            999999888888889988877532       678888777543210   0013678888888888999999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC--CceeeccHHHHHHHHhcCCce-----e-e
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE--GGFCTGSARVVDHQRLSSSGY-----V-F  344 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~~~~~~~~~~~~~~~-----~-f  344 (483)
                      +||+++|+||+|++|.+...+    ..     .++|++++|++|++++.  +||+++++++++.++.....+     . .
T Consensus       167 ~~~~~vivD~a~~~g~~~~~~----~~-----~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (361)
T cd06452         167 EYGVPLLLNGAYTVGRMPVSG----KE-----LGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELL  237 (361)
T ss_pred             HcCCeEEEECCcccCCcCCCH----HH-----cCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeee
Confidence            999999999999876443211    11     23489999999999743  489999999888875543221     1 1


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDI  422 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i  422 (483)
                      .++.++..++++.++++.+.+.-+...+..++.+++++.|++++|+.+.+  +...+++.+.................++
T Consensus       238 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~  317 (361)
T cd06452         238 GCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFL  317 (361)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhH
Confidence            12222223344445555443222234444556689999999988888763  2345677666531000000000112246


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .+.+++ +||.+..   +..     ...+|++. ..+|++|++.++++|+++.
T Consensus       318 ~~~L~~-~gI~~~~---~~~-----~~~~ri~~-~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         318 YSELKK-RGIHGIK---PGL-----TRYFKLST-YGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             HHHHHH-cCceEEc---CCC-----ceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence            676544 5998532   111     12278877 4479999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.95  E-value=1.2e-26  Score=231.32  Aligned_cols=324  Identities=16%  Similarity=0.197  Sum_probs=224.4

Q ss_pred             EeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccC
Q 011567          113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK  192 (483)
Q Consensus       113 d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~  192 (483)
                      ||+|.|++|.  +|.+.+++.+.+....        .|+..+...++++.+++++|.++.+++++|++++..+++++.++
T Consensus         1 ~~~~~~~~~~--~~~v~~a~~~~~~~~~--------~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~   70 (338)
T cd06502           1 DFRSDTVTGP--TPEMLEAMAAANVGDD--------VYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQP   70 (338)
T ss_pred             CcccccCCCC--CHHHHHHHHhcccCCc--------ccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCC
Confidence            6899999984  5889998877653221        34556778999999999999777888899999999999999999


Q ss_pred             CcEEEEcCCchhHHHhH---hhhcCCeEEEecC----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc---c
Q 011567          193 GDLIVADEGVHWGIQNG---LYLSRSTVVYFKH----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI---A  262 (483)
Q Consensus       193 gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i---~  262 (483)
                      ||.|+++.++|.++..+   ..+.|.+++.+++    .|.+++++.+++..+   +...++++|+++++.++ |.+   .
T Consensus        71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~---~~~~~~~~v~l~~p~n~-g~~~~~~  146 (338)
T cd06502          71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD---IHFPPPSLVSLENTTEG-GTVYPLD  146 (338)
T ss_pred             CCeEEEecCcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC---CcCCcceEEEEEeecCC-ccccCHH
Confidence            99999999999876543   3457888887775    367788877754210   01113577777777766 543   3


Q ss_pred             ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCc-eeeccHHHHHHHHhcCCc
Q 011567          263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGG-FCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG-~i~~~~~~~~~~~~~~~~  341 (483)
                      ++++|+++|++||+++|+||+|..+..+..|.... ...   ..+|+++.|++|++|.+|| ++++++++++.++.....
T Consensus       147 ~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~-~~~---~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~  222 (338)
T cd06502         147 ELKAISALAKENGLPLHLDGARLANAAAALGVALK-TYK---SGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQ  222 (338)
T ss_pred             HHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH-HHH---hcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHH
Confidence            47889999999999999999986554332222111 111   2447888999999986655 466888888877654322


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      +.++.+.+++.++++.++|+.- ...+..+++.++.+++.+.|+++ ++.+. ++.++++.++++..       .....+
T Consensus       223 ~~~~~~~~~~~~~a~~~~L~~~-~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~v~~~~~-------~~~~~~  292 (338)
T cd06502         223 AGGGMRQSGFLAAAGLAALEND-LWLRRLRHDHEMARRLAEALEEL-GGLES-EVQTNIVLLDPVEA-------NAVFVE  292 (338)
T ss_pred             hCCChhhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHhc-CCCcc-cccCCeEEEecCCc-------cHHHHH
Confidence            2222334566666666666531 12346688888899999999886 55443 34678888776321       112223


Q ss_pred             HHHHHH--HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          422 IADWAL--KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       422 i~~~~l--~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +..++.  .++|+.+.+...         ..||++++..+|++|++++++++++
T Consensus       293 l~~~l~~~~~~gi~~~~~~~---------~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         293 LSKEAIERRGEGVLFYAWGE---------GGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHHHhhhCCEEEEecCC---------CeEEEEeecCCCHHHHHHHHHHHhc
Confidence            333322  145898876432         3399999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2.4e-25  Score=225.72  Aligned_cols=337  Identities=17%  Similarity=0.174  Sum_probs=232.6

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--C--CCEEEecccHHHHHhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--T--PDSILYSYGLSTMFSA  185 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--~--e~~i~~~sG~~a~~~a  185 (483)
                      .++||..+.. .+...+.+.+++.+.+.....+   .....|..++...+++.+.+++|  .  ++.++.++|++++..+
T Consensus        25 ~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~---Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~  100 (382)
T PRK06108         25 GVLPLWFGES-DLPTPDFIRDAAAAALADGETF---YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA  100 (382)
T ss_pred             CeEEecCCCC-CCCCCHHHHHHHHHHHhcCCCC---CCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence            5788888733 2434688999988887652111   11123455566666666666656  2  3455557778999999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      +.+++++||.|+++.+.|..+...+...|.+++.++.+        |++++++.+..          ++++|++..++++
T Consensus       101 ~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~----------~~~~i~l~~p~NP  170 (382)
T PRK06108        101 AQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP----------RTRALFINSPNNP  170 (382)
T ss_pred             HHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc----------cceEEEEECCCCC
Confidence            99999999999999999988888888889988887753        45566555432          2566777778889


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceeeccHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      +|.+.+   +++|+++|++||+++|+||+|+.+.++. +.......++. +.+..++++|+||.+|..|   ||++++++
T Consensus       171 tG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~  249 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPA  249 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHH
Confidence            998887   7889999999999999999998776642 11111112221 2344688999999998767   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +++.+.... .+. ..+.+++...++.++++...+ .++.+++++++.+.+.+.|++++++.+..+..+.++++.+++..
T Consensus       250 ~~~~~~~~~-~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~  327 (382)
T PRK06108        250 LGQVLEKLI-EYN-TSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT  327 (382)
T ss_pred             HHHHHHHHH-Hhc-ccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC
Confidence            888775432 111 123456666666666653211 13567888888999999998877877765444556677774321


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                              ...++++.+++++||.+.++.....   ..+..+|++++.  ++++++++++.|+++++
T Consensus       328 --------~~~~~~~~ll~~~gV~v~pg~~f~~---~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        328 --------DSLALAKRLVDEAGLGLAPGTAFGP---GGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             --------CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence                    1235777777778999987653211   012459999987  89999999999988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=4.8e-25  Score=224.69  Aligned_cols=337  Identities=14%  Similarity=0.127  Sum_probs=234.9

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCC--CCCCCcccChHHHHHHHHHHHhhhCCC--CEE-EecccHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGS--CGPRGFYGTIDVHLDCEARIAKFLGTP--DSI-LYSYGLSTM  182 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~--~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i-~~~sG~~a~  182 (483)
                      +.-|+|-++.   |. .++.+.+++.+.++.+....  .......-..+...++++.+++++|.+  +.+ +.+++++++
T Consensus        16 ~~iyld~a~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l   91 (398)
T TIGR03392        16 GTVYLDSAAT---AL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESI   91 (398)
T ss_pred             CeEEeeCccc---cC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHH
Confidence            3468887775   44 55788999988886532111  111000011245678999999999963  445 456777888


Q ss_pred             Hhhhhhh----ccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          183 FSAIPCF----CKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       183 ~~ai~~~----~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ..++.++    .++||.|++....|.+..    ..++..|.+++.++.+     |++++++.+.+          ++++|
T Consensus        92 ~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~----------~t~lv  161 (398)
T TIGR03392        92 NLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP----------RTRIL  161 (398)
T ss_pred             HHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc----------CceEE
Confidence            8888877    478999999999987742    3345678888877653     56667666532          26788


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS  328 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~  328 (483)
                      ++..+++++|.+.|+++|.++|++||+++++|++|+.|...         .++...++|++++|.+|.+|+.| ||++.+
T Consensus       162 ~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~  232 (398)
T TIGR03392       162 ALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGP---------PDVQALDIDFYAFSGHKLYGPTGIGVLYGK  232 (398)
T ss_pred             EEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------CChhhcCCCEEEEecccccCCCceEEEEEc
Confidence            88999999999999999999999999999999999865431         12222346899899999888766 899888


Q ss_pred             HHHHHHHHhcCC------------------ceeecC-CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccC
Q 011567          329 ARVVDHQRLSSS------------------GYVFSA-SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       329 ~~~~~~~~~~~~------------------~~~fs~-~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~  387 (483)
                      +++++.+.....                  ++.|.. +.|....+++.++++.+.+.  .++.++..++.+++++.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l  312 (398)
T TIGR03392       233 TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL  312 (398)
T ss_pred             HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence            888776542210                  112322 34445666677788877543  356788888999999999988


Q ss_pred             CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCCHHHH
Q 011567          388 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       388 ~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t~edi  464 (483)
                      +++.+...+.++++.+.+...      +   .+++.+. |.++||.++.+..+...   ....+..||++++..+|++|+
T Consensus       313 ~g~~~~~~~~~~i~~~~~~~~------~---~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei  382 (398)
T TIGR03392       313 PGFRSFRCPGSSLLAFDFAGV------H---HSDLAAL-LAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDV  382 (398)
T ss_pred             CCeEEeCCCCCcEEEEEeCCc------C---HHHHHHH-HHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHH
Confidence            888877655677888776421      1   2245654 55679999876432110   000124599999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          465 VKACESLKRISAV  477 (483)
Q Consensus       465 ~~~~~~l~~~~~~  477 (483)
                      ++++++|++++++
T Consensus       383 ~~l~~~l~~~~~~  395 (398)
T TIGR03392       383 DALVDAVGAALEL  395 (398)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=3.9e-25  Score=225.54  Aligned_cols=337  Identities=13%  Similarity=0.133  Sum_probs=235.0

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCC--CCCCCcccChHHHHHHHHHHHhhhCC-C-CEEEe-cccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGS--CGPRGFYGTIDVHLDCEARIAKFLGT-P-DSILY-SYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~--~~~~~~~g~~~~~~~l~~~La~~~g~-e-~~i~~-~sG~~a~~  183 (483)
                      .-|+|-++.   |. .++.+.+++.+.++.+....  ..........+...++++.+++++|. + +.|++ +++++++.
T Consensus        20 ~~yld~a~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~   95 (401)
T PRK10874         20 GVYLDSAAT---AL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESIN   95 (401)
T ss_pred             eEEEeCCcc---cC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHH
Confidence            457877765   44 55788899988887642111  11000011235678899999999997 3 45554 66678888


Q ss_pred             hhhhhhc----cCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          184 SAIPCFC----KKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       184 ~ai~~~~----~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .+++++.    ++||.|++....|.+..    ...+..|.+++.++.+     |++++++.+..          ++++|+
T Consensus        96 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----------~t~lv~  165 (401)
T PRK10874         96 LVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP----------RTRILA  165 (401)
T ss_pred             HHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc----------CcEEEE
Confidence            8888873    78999999999987642    3345668888777643     56666665532          267888


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~  329 (483)
                      +..+.+++|.+.|+++|.++|++||+++++|++|+.|.+.         .++...++|++++|++|.+|+.| |+++.++
T Consensus       166 i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~  236 (401)
T PRK10874        166 LGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP---------ADVQALDIDFYAFSGHKLYGPTGIGVLYGKS  236 (401)
T ss_pred             EeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc---------CCchhcCCCEEEEecccccCCCccEEEEEch
Confidence            8999999999999999999999999999999999865432         12222346999999999888776 8988888


Q ss_pred             HHHHHHHhcC------------------CceeecC-CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCC
Q 011567          330 RVVDHQRLSS------------------SGYVFSA-SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       330 ~~~~~~~~~~------------------~~~~fs~-~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      ++++.+....                  .++.|.. +.|.....+..++++.+.+.  ....++.+++.+++++.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~  316 (401)
T PRK10874        237 ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLP  316 (401)
T ss_pred             HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8877653211                  1123322 34445666666778776543  3467788888999999999888


Q ss_pred             CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCCHHHHH
Q 011567          389 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      |+.+...+.++++.+.+...      +   ..++.+. |.++||.++.+..+..+   .......||++++..+|++|++
T Consensus       317 g~~~~~~~~~~i~~~~~~~~------~---~~~~~~~-L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid  386 (401)
T PRK10874        317 GFRSFRCQDSSLLAFDFAGV------H---HSDLVTL-LAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVD  386 (401)
T ss_pred             CEEEeCCCCCcEEEEEECCc------C---HHHHHHH-HHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHH
Confidence            98877666777888876421      1   2345654 55679999876543210   0011245999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          466 KACESLKRISAVV  478 (483)
Q Consensus       466 ~~~~~l~~~~~~~  478 (483)
                      +++++|+++++.+
T Consensus       387 ~ll~al~~~~~~~  399 (401)
T PRK10874        387 ALVNAVDRALELL  399 (401)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987753

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=5.7e-25  Score=221.37  Aligned_cols=339  Identities=19%  Similarity=0.232  Sum_probs=246.3

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CC-EEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PD-SILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~-~i~~~sG~~a~~  183 (483)
                      +++||++.+++ .+..++.+.+++.+++...+.+..   ...|...+.+.+.+.+.+..|.    ++ .++++++.+|+.
T Consensus        28 ~~vi~l~iG~P-d~~~p~~i~~a~~~a~~~~~~~Y~---~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~  103 (393)
T COG0436          28 EDVIDLSIGEP-DFPTPEHIIEAAIEALEEGGTHYT---PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALF  103 (393)
T ss_pred             CCEEEeCCCCC-CCCCCHHHHHHHHHHHhcccCCCC---CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHH
Confidence            46899998866 444668899999999987432111   1345555555555555555552    24 566677779999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----C----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      .++.++..+||.|++.++++.++...+.+.|.+++.++.    +    |.++|++.+.+          ++++|+++.+.
T Consensus       104 ~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~----------ktk~i~ln~P~  173 (393)
T COG0436         104 LAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP----------KTKAIILNSPN  173 (393)
T ss_pred             HHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc----------cceEEEEeCCC
Confidence            999999999999999999999999999999999888763    2    56777766654          37899999999


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS  328 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~  328 (483)
                      |+||.+.+   |++|+++|++||+++|.||+|....+... ...+.+..+.  .+.-|.+.||||+++..|   ||++++
T Consensus       174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~--~~~~i~i~s~SK~~~mtGwRvG~~v~~  251 (393)
T COG0436         174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA--RDRTITINSFSKTYGMTGWRIGWVVGP  251 (393)
T ss_pred             CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC--cceEEEEecccccccccccceeEeecC
Confidence            99999988   89999999999999999999987666431 1122222221  245688899999999877   999998


Q ss_pred             -HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEE
Q 011567          329 -ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFL  403 (483)
Q Consensus       329 -~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l  403 (483)
                       +++++.+.... .++.. +.+.....++.++|+.-+.   ....++..+++++.+.+.|.++.|+.+.. +..++.++.
T Consensus       252 ~~~l~~~~~~~~-~~~~~-~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~  329 (393)
T COG0436         252 PEELIAALRKLK-SYLTS-CAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFP  329 (393)
T ss_pred             hHHHHHHHHHHH-Hhccc-CCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEe
Confidence             77887765222 22222 2355666667777764422   12345778899999999999987888876 336666777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .++..        ....+++.++|++.||.+.|+.....+..  ...+|++..  .++++++++++++.+.++.
T Consensus       330 ~i~~~--------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g--~~~vRis~~--~~~~~l~~a~~rl~~~~~~  391 (393)
T COG0436         330 KIPEL--------LDSEEFAKKLLEEAGVAVVPGSGFGEPPG--EGYVRLSLA--TSEETLEEALRRLARFLAE  391 (393)
T ss_pred             ecCCC--------CCHHHHHHHHHHhCCEEEecccccCCCCC--CCeEEEEEe--cCHHHHHHHHHHHHHHHHh
Confidence            76532        11346888999999999999876543100  123999886  4559999999999988765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.95  E-value=4.1e-25  Score=225.20  Aligned_cols=328  Identities=15%  Similarity=0.145  Sum_probs=224.4

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-cccChHHHHHHHHHHHhhhCCCC-EEEe-cccHHHHHhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG-FYGTIDVHLDCEARIAKFLGTPD-SILY-SYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~-~~g~~~~~~~l~~~La~~~g~e~-~i~~-~sG~~a~~~a  185 (483)
                      ..|+|.++.   |. .++.+.+++.+.+..++.++.+... ..+..+.+.++++.+++++|.+. .+++ +++++++..+
T Consensus        18 ~~yl~~~~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~   93 (397)
T TIGR01976        18 RVFFDNPAG---TQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLL   93 (397)
T ss_pred             eEEecCCcc---CC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHH
Confidence            357776654   33 5689999999998876443222111 11233567899999999999642 3545 6666776666


Q ss_pred             hhhh---ccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          186 IPCF---CKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       186 i~~~---~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +.++   .++||.|++....|.+...    .++..|.+++.++.+      |++++++.+.+          .+++|+++
T Consensus        94 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~----------~~~lv~i~  163 (397)
T TIGR01976        94 SRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP----------RTRLVAVT  163 (397)
T ss_pred             HHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC----------CceEEEEe
Confidence            5554   5789999999988877643    345678888776543      46666666532          26789999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVV  332 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~  332 (483)
                      .+++++|.+.|+++|.++|++||+++++||+|+.|..      .   .++...++|++++|++|++|+..||++++++++
T Consensus       164 ~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~------~---~~~~~~~~d~~~~s~~K~~g~~~G~l~~~~~~~  234 (397)
T TIGR01976       164 AASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHG------L---IDVQATGADFLTCSAYKFFGPHMGILWGRPELL  234 (397)
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhcccc------C---CCHHHcCCCEEEEechhhcCCceEEEEEcHHHH
Confidence            9999999999999999999999999999999875421      1   122223458999999999998789999998888


Q ss_pred             HHHHhcCCcee-------ecC-CCcHHHHHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHhhccCC
Q 011567          333 DHQRLSSSGYV-------FSA-SLPPYLASAAITAIDVLEEN----------------PDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       333 ~~~~~~~~~~~-------fs~-~~~p~~~aaa~~al~~l~~~----------------~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      +.+......+.       |.. +.+...+++..++++.+.+.                +...++..++.+++++.|++++
T Consensus       235 ~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~  314 (397)
T TIGR01976       235 MNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLP  314 (397)
T ss_pred             hhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77654322222       222 23444555566777766432                2345666778889999998876


Q ss_pred             CceeecC----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc--------ccccCCCCCceEEEcc
Q 011567          389 GLSIASN----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS--------MLDKCRLPVGIRLFVS  456 (483)
Q Consensus       389 ~~~i~~~----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~--------~~~~~~~~~~lRi~~~  456 (483)
                      ++.+.++    ..++++.+.+...         ...++.++ |+++||.++....+        .++..  ...||++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~--~~~iRis~~  382 (397)
T TIGR01976       315 GVTLYGVARLAARVPTVSFTVHGL---------PPQRVVRR-LADQGIDAWAGHFYAVRLLRRLGLNDE--GGVVRVGLA  382 (397)
T ss_pred             CEEEeCCCCccCCCceEEEEeCCc---------CHHHHHHH-HHHCCeEEEeCccchHHHHHHhCCCCC--CCeEEEEee
Confidence            6877643    2577887776321         12356665 45679999865221        11100  135999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESL  471 (483)
Q Consensus       457 ~~~t~edi~~~~~~l  471 (483)
                      ..+|++|+++++++|
T Consensus       383 ~~~t~~di~~l~~~l  397 (397)
T TIGR01976       383 HYNTAEEVDRLLEAL  397 (397)
T ss_pred             ccCCHHHHHHHHHhC
Confidence            999999999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02721 threonine aldolase

Probab=99.95  E-value=1.6e-25  Score=224.49  Aligned_cols=331  Identities=18%  Similarity=0.254  Sum_probs=222.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF  189 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~  189 (483)
                      +++||+++... . ++|.+.+++.+.  ..+..      .++..+...+|++.|++++|.+..+++++|++++..++.++
T Consensus         6 ~~~~~~~~~~~-~-~~~~~~~a~~~~--~~~~~------~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~   75 (353)
T PLN02721          6 RVVDLRSDTVT-K-PTDAMRAAMANA--EVDDD------VLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVH   75 (353)
T ss_pred             hhhhhhccccc-C-CCHHHHHHHHhc--cCCCc------ccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHH
Confidence            57889988544 3 568888887653  11111      12234557899999999999998899999999988888888


Q ss_pred             cc-CCcEEEEcCCchhHHHh---HhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CC
Q 011567          190 CK-KGDLIVADEGVHWGIQN---GLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SG  259 (483)
Q Consensus       190 ~~-~gdiI~~~~~~h~s~~~---g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G  259 (483)
                      ++ +||.|+++++.|.+..+   .....|.+++.++.+     |++++++.+++....   ...++++|++++++++ +|
T Consensus        76 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~---~~~~~~~v~l~~~~~np~G  152 (353)
T PLN02721         76 CDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDD---HFPTTRLICLENTHANCGG  152 (353)
T ss_pred             ccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCC---CCCcceEEEEeccccccCC
Confidence            87 99999999999977665   245667788777643     778888877643211   1123678888887655 77


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-CceeeccHHHHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-GGFCTGSARVVDHQ  335 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-GG~i~~~~~~~~~~  335 (483)
                      .+.|   +++|.++|++||+++|+||+|.++.....+..... . +  ..+|.++.|++|++++. |+++++++++++.+
T Consensus       153 ~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~-~-~--~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~  228 (353)
T PLN02721        153 RCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHR-L-V--KAADSVSVCLSKGLGAPVGSVIVGSKSFIRKA  228 (353)
T ss_pred             ccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHH-H-h--hhCCEEEEecccccCCceeeEEecCHHHHHhH
Confidence            7776   78999999999999999999876542211111111 1 1  24577788999999854 45677888887765


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEEEecCCCCCchh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      ......+..+....+..++++..+++..   .+..++..++.+++.+.|++++++.+ ...+.++++++++....+    
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----  301 (353)
T PLN02721        229 KRLRKTLGGGMRQVGVLAAAALVALQEN---VPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSR----  301 (353)
T ss_pred             HHHHHhcCCCeehhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCcc----
Confidence            4322111111111223333344444332   12344556778899999988777754 344567788887743110    


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                        .....+++.+. ++||.+.+..         +..||++++..++++|+++++++|++++.
T Consensus       302 --~~~~~~~~~L~-~~gi~v~~~~---------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        302 --ITAEKLCKSLE-EHGVLLMPGN---------SSRIRVVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             --ccHHHHHHHHH-hCCcEEecCC---------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence              11335777654 6699998752         24599999989999999999999998765

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6e-25  Score=223.66  Aligned_cols=339  Identities=17%  Similarity=0.225  Sum_probs=232.7

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecccH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYGL  179 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG~  179 (483)
                      +.+++||..++. .+..++.+.+++.+.+......       |+...-..+|++.|++++    |.    ++.+++++++
T Consensus        30 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~  101 (393)
T PRK05764         30 GRDVISLGAGEP-DFDTPEHIKEAAIEALDDGKTK-------YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK  101 (393)
T ss_pred             cCCEEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCC-------cCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcH
Confidence            346899998854 3435688899988888753221       222223456677777665    32    3455667778


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++..++.+++++||.|+++.+.|..+...++..|.+++.++.+       |++++++.++.          .+++|++.
T Consensus       102 ~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~  171 (393)
T PRK05764        102 QALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP----------KTKALILN  171 (393)
T ss_pred             HHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc----------cceEEEEE
Confidence            99999999999999999999999999888888889998887764       35666665532          25666677


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      .+.+++|.+.+   +++|+++|++||+++|+||+|+...++.. ...+.+. ..+..+.+++++|+||.+|..|   ||+
T Consensus       172 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~~~~G~RiG~i  250 (393)
T PRK05764        172 SPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASL-SPELRDRTITVNGFSKAYAMTGWRLGYA  250 (393)
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHc-CCCCcCCEEEEecCcccccCccceeEEE
Confidence            77888999887   78899999999999999999987655321 1122221 1111235789999999998667   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++++++++.++.....+  ....+++...++.+.++. ....++.+++++++.+.+++.|++++++.+..+..+.++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~  328 (393)
T PRK05764        251 AGPKELIKAMSKLQSHS--TSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPN  328 (393)
T ss_pred             ecCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEe
Confidence            99999998876543222  223456666666666641 111134677778888889999988778877654445566666


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +......   ......++...++++.||.+.++.....     +..+|+++.  ++++++++++++|.+++++
T Consensus       329 ~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~~vRis~~--~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        329 VSKLLGK---SITDSLEFAEALLEEAGVAVVPGIAFGA-----PGYVRLSYA--TSLEDLEEGLERIERFLES  391 (393)
T ss_pred             ccccccc---ccCCHHHHHHHHHHhCCEEEccccccCC-----CCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            6432110   0001235677677777999987644322     345999875  5899999999999998764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.95  E-value=9.2e-25  Score=222.97  Aligned_cols=341  Identities=16%  Similarity=0.177  Sum_probs=229.8

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~  183 (483)
                      ..++||..+++ ++...+.+.+++.+.+++ +..  ......|..++...+.+.+.+..|.    + +.++.+++++++.
T Consensus        54 ~~~i~l~~G~P-~~~~~~~~~~~~~~~~~~-~~~--~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~  129 (413)
T PLN00175         54 HGAINLGQGFP-NFDGPDFVKEAAIQAIRD-GKN--QYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIA  129 (413)
T ss_pred             CCeEecCCCCC-CCCCCHHHHHHHHHHHhc-CCC--CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHH
Confidence            46899998855 344567888998888875 211  1111223344444444444444442    2 2444455678999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      .++.+++++||.|++.++.|..+...++..|.+++.++..      |+++|++.+..          ++++|++.+++|+
T Consensus       130 ~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~----------~~k~i~i~~p~NP  199 (413)
T PLN00175        130 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS----------KTRAILINTPHNP  199 (413)
T ss_pred             HHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc----------CceEEEecCCCCC
Confidence            9999999999999999999998888888899988877542      45666655532          2567788888899


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      +|.+.+   +++|+++|++|++++|+||+|....++.....+.+..+.  .+..|+++||||+++.+|   ||+++++++
T Consensus       200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~--~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l  277 (413)
T PLN00175        200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPHL  277 (413)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC--cCcEEEEecchhhccCcchheeeeEeCHHH
Confidence            999987   788999999999999999999876654322222232222  244788999999999777   999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      ++.++.......++.  ++....++.++|+..+. .++.++.++++.+.+.+.|++. |+.+..+..+.++++.+... +
T Consensus       278 ~~~l~~~~~~~~~~~--s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~-~  353 (413)
T PLN00175        278 TWGVRQAHSFLTFAT--ATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHTPF-G  353 (413)
T ss_pred             HHHHHHHHhhccCCC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccc-C
Confidence            888765433223333  44444455555542211 1346778888999999999886 77776554555677765321 1


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      . .    ...+++..++++.||.+.++.............+||++.  .++++++++++.|+++++
T Consensus       354 ~-~----~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        354 F-E----NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             C-C----CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            0 0    123577777777799998875321110011234999997  379999999999998765

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.95  E-value=2.2e-25  Score=229.91  Aligned_cols=338  Identities=16%  Similarity=0.158  Sum_probs=232.7

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHH----HHHHHHhhhCCCC-EEEe----cc
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLD----CEARIAKFLGTPD-SILY----SY  177 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~----l~~~La~~~g~e~-~i~~----~s  177 (483)
                      ++.||+..+ |+    ..|.++++....+. +|+.|..+++...|+.. ...    .++++++++|.+. .+.+    +|
T Consensus        34 ~~~l~l~~sen~----~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~-~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~s  108 (452)
T PTZ00094         34 IEGLELIASENF----TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEV-VDKIENLCQKRALEAFGLDPEEWGVNVQPYS  108 (452)
T ss_pred             HcCeeEeccccc----CCHHHHHHhcchhhccccCCCCCccccccchH-HHHHHHHHHHHHHHHhCCCcccceeecCCCc
Confidence            467888766 55    56899999998884 68778888887666543 233    4568999999753 2222    68


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-h-------cC--CeEEEecCC-----CHHHHHHHHHHhhhhhhhc
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-L-------SR--STVVYFKHN-----DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~-------s~--~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~  242 (483)
                      |+++|..++.++.++||.|+++...|++...... +       .+  .++..++++     |+++|++.+++..      
T Consensus       109 gt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~------  182 (452)
T PTZ00094        109 GSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR------  182 (452)
T ss_pred             hHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC------
Confidence            9999999999999999999999989987654321 1       11  223345554     8999999886432      


Q ss_pred             cCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCC
Q 011567          243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATE  321 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~  321 (483)
                         +++|++.  .++.|.+.|+++|.++|+++|+++++|++|++|.++..+..      .+...+|++++|.+|+| |+.
T Consensus       183 ---~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~------~~~~~~D~l~~S~hK~l~GP~  251 (452)
T PTZ00094        183 ---PKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLP------SPFPYADVVTTTTHKSLRGPR  251 (452)
T ss_pred             ---CCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCC------CCCCCCcEEEcCCccCCCCCC
Confidence               2344442  24568999999999999999999999999999987632211      11135799999999988 677


Q ss_pred             CceeeccHHHHHHHHhcCCcee---ecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567          322 GGFCTGSARVVDHQRLSSSGYV---FSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP  396 (483)
Q Consensus       322 GG~i~~~~~~~~~~~~~~~~~~---fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~  396 (483)
                      ||+++.++++.+.+........   |.++.++..+++..++++.+...  ++..+++.++.++|.+.|.+. |+++..+.
T Consensus       252 Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~  330 (452)
T PTZ00094        252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGG  330 (452)
T ss_pred             ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCC
Confidence            8888777665443332221222   23366777888888899988542  467899999999999999885 88876432


Q ss_pred             -CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC----CHHHHHHHHHHH
Q 011567          397 -ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH----SEADLVKACESL  471 (483)
Q Consensus       397 -~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~----t~edi~~~~~~l  471 (483)
                       .+++..+.+....    .+   ...+.. .|++.||.+.....|.......+++||++++..+    +++|++++++.|
T Consensus       331 ~~~~~~~v~~~~~~----~~---~~~~~~-~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l  402 (452)
T PTZ00094        331 TDNHLVLVDLRPFG----IT---GSKMEK-LLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFL  402 (452)
T ss_pred             CCCceEeecCCcCC----CC---HHHHHH-HHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHH
Confidence             2445555443221    01   123444 5677799997443222111112467999995555    499999999999


Q ss_pred             HHHHHH
Q 011567          472 KRISAV  477 (483)
Q Consensus       472 ~~~~~~  477 (483)
                      +++++.
T Consensus       403 ~~~~~~  408 (452)
T PTZ00094        403 DRAVKL  408 (452)
T ss_pred             HHHHHH
Confidence            999875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=8.8e-25  Score=220.37  Aligned_cols=324  Identities=18%  Similarity=0.184  Sum_probs=229.0

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEecccH-HHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYGL-STMF  183 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG~-~a~~  183 (483)
                      ++++++||+++ +++|.  +|.+.+++.+.+....        .|+.. ...++++.+|++++.+ +.+++++|+ +++.
T Consensus        30 ~~~~~i~l~~~~~~~~~--~~~~~~a~~~~~~~~~--------~y~~~-~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~   98 (367)
T PRK02731         30 GIADIIKLASNENPLGP--SPKAIEAIRAAADELH--------RYPDG-SGFELKAALAEKFGVDPERIILGNGSDEILE   98 (367)
T ss_pred             CCCceEEecCCCCCCCC--CHHHHHHHHHHHHhhc--------CCCCC-cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHH
Confidence            57789999998 77774  5889999888876531        12211 1368999999999864 456666665 5567


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      .++.++.++||.|+++.+.|..+.......|.+++.++.+    |++++++.+..          ++++|++..+++++|
T Consensus        99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~l~~p~nptG  168 (367)
T PRK02731         99 LLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVTP----------RTRLVFIANPNNPTG  168 (367)
T ss_pred             HHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecccCCCCCHHHHHHHhCC----------CCcEEEEeCCCCCCC
Confidence            7778889999999999998877776677788888887653    56666665531          256777788899999


Q ss_pred             CccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          260 QIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      .+.|++++.++++.+  |+++|+||+|..+..+..........+.  .+..++++|++|++|..|   ||+++++++++.
T Consensus       169 ~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~  246 (367)
T PRK02731        169 TYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAK--FPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDA  246 (367)
T ss_pred             cCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhh--cCCEEEEeeehHhhcCcccceeeeeCCHHHHHH
Confidence            999999999999875  8999999999765543211111122222  223688899999998777   999999999988


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      ++.....+  +  .++....++.+.++.....++..+.++++.+.+.+.|++. |+.+. ++.++++++.+++..     
T Consensus       247 l~~~~~~~--~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~-----  315 (367)
T PRK02731        247 LNRVRQPF--N--VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGK-----  315 (367)
T ss_pred             HHHccCCC--C--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCC-----
Confidence            87544332  2  2455555565555422112345667777888888888886 77665 346788888873221     


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                         ...++++.++ ++||.+.+.....     .+..||++++   +.+|+++++++|+++++
T Consensus       316 ---~~~~~~~~L~-~~gI~v~~~~~~~-----~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        316 ---DAAEAYQALL-KRGVIVRPVAGYG-----LPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             ---CHHHHHHHHH-HCCEEEEeCCCCC-----CCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence               1335676654 5699998764332     1345999984   78999999999998764

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.95  E-value=2.6e-25  Score=227.06  Aligned_cols=339  Identities=18%  Similarity=0.218  Sum_probs=225.9

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChH--HHHH-HHHHHHhhhCCCCE-EEecccHHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTID--VHLD-CEARIAKFLGTPDS-ILYSYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~--~~~~-l~~~La~~~g~e~~-i~~~sG~~a~  182 (483)
                      |++|||..+ +++    +|++++++.+.+ .+|+.|.++++.+.|+..  ...+ .++.+++++|.+.. +++++|++|+
T Consensus        19 ~~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~   94 (402)
T cd00378          19 RETLELIASENFT----SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQAN   94 (402)
T ss_pred             HhCeeeeccCCcC----CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHH
Confidence            457887665 564    689999998776 678888888876555432  2233 34567889998765 4557899999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhH-----hhhcCCeEEE--ecCC------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNG-----LYLSRSTVVY--FKHN------DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g-----~~~s~~~v~~--~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ..++.++.++||.|+++.+.|.+....     +...|.++..  ++++      |++++++.+...         ++++|
T Consensus        95 ~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~---------~~~~v  165 (402)
T cd00378          95 LAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF---------KPKLI  165 (402)
T ss_pred             HHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC---------CCCEE
Confidence            999999999999999998888654322     4445554433  3333      788888777532         13455


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeecc
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGS  328 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~  328 (483)
                      ++.+.  ..|...|+++|.++|++||+++|+||+|..|..+. |. ....+.    .+|++++|++|++ |+.||+++++
T Consensus       166 ~~~~~--~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~-g~-~~~~~~----~~dv~~~s~sK~l~G~~gg~i~~~  237 (402)
T cd00378         166 VAGAS--AYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAG-GV-FPNPLP----GADVVTTTTHKTLRGPRGGLILTR  237 (402)
T ss_pred             EecCc--ccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhc-cc-CCCccc----CCcEEEeccccCCCCCCceEEEec
Confidence            54332  23677799999999999999999999987665432 21 111111    3488999999999 5778998887


Q ss_pred             H-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEe
Q 011567          329 A-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLIL  405 (483)
Q Consensus       329 ~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~l  405 (483)
                      + ++++.++.....+.++++..+..++++.+...... ..++.+++++++.+++.+.|++. |+.+.. +..++++++.+
T Consensus       238 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~  316 (402)
T cd00378         238 KGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDL  316 (402)
T ss_pred             cHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeC
Confidence            6 88888765444444443322333333332322333 23457788999999999999886 887753 34677888887


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc-CCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK-CRLPVGIRLFVSA----AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~-~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+...    +   ..++.+ .|+++||.+.+..+|.... ...+.++|++++.    .++++|++++++.|++++++
T Consensus       317 ~~~~~----~---~~~~~~-~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         317 RPKGI----T---GKAAED-ALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CccCC----C---HHHHHH-HHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            53211    1   113333 4667799998755544311 0113569998876    45899999999999987653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.94  E-value=6.2e-25  Score=225.13  Aligned_cols=338  Identities=18%  Similarity=0.229  Sum_probs=227.3

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHHH----HHHhhhCCCCE-EEecccHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCEA----RIAKFLGTPDS-ILYSYGLST  181 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~~----~La~~~g~e~~-i~~~sG~~a  181 (483)
                      |.+|++.++ |+    .+|.+++++.+.+ .+|+.|.++++.+.|. +...++++    .+++++|.+.. +++++|++|
T Consensus        25 ~~~~~l~~~~n~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~a   99 (416)
T PRK00011         25 EEHIELIASENF----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYANVQPHSGSQA   99 (416)
T ss_pred             hcCeeeecccCc----CCHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceeeecCCchHH
Confidence            567888887 55    3689999987775 4677777777765553 34555555    89999998866 556889999


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHh---Hhh--hcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQN---GLY--LSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~---g~~--~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +..++.++.++||.|+++.+.|.+...   ...  ..+.+++.++.      .|++++++.+++.         ++++|+
T Consensus       100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~k~v~  170 (416)
T PRK00011        100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEH---------KPKLII  170 (416)
T ss_pred             HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhc---------CCCEEE
Confidence            999999999999999999988865421   111  22345555543      3788888877542         134555


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeecc-
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGS-  328 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~-  328 (483)
                      +.+  ++.|...|+++|.++|++||+++|+|++|+.|.++.   |... ..+  ..+|++++|++|++ |+.||+++++ 
T Consensus       171 ~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~---g~~~-~~~--~~~di~~~S~~K~l~g~~gg~i~~~~  242 (416)
T PRK00011        171 AGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAA---GVHP-SPV--PHADVVTTTTHKTLRGPRGGLILTND  242 (416)
T ss_pred             ECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhccccc---CccC-CCC--CCCcEEEecCCcCCCCCCceEEEeCC
Confidence            532  234677899999999999999999999998776542   1110 111  14589999999999 5778999885 


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEec
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILE  406 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~l~  406 (483)
                      +++.+.++.....+.+++...+..++...+.++.+++. ++.+++++++++++++.|++. |+++.. ...++++++.+.
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~  321 (416)
T PRK00011        243 EELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR  321 (416)
T ss_pred             HHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence            68888776554444444433344444344444544433 567899999999999999986 877653 234577778774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc-cccCCCCCceEEEcc----CCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM-LDKCRLPVGIRLFVS----AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~-~~~~~~~~~lRi~~~----~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +..  .  +   ..++.+ .|+++||.+.....+. ......+.++|++..    ..+|++|+++++++|++++..
T Consensus       322 ~~~--~--~---~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        322 SKG--L--T---GKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             ccC--C--C---HHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            221  0  1   124455 4566799997432211 001112356999542    267899999999999988654

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.94  E-value=1.2e-24  Score=219.83  Aligned_cols=316  Identities=16%  Similarity=0.174  Sum_probs=224.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEecccHHHHHhhhhhhcc----CCcEEE
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLSTMFSAIPCFCK----KGDLIV  197 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~a~~~ai~~~~~----~gdiI~  197 (483)
                      .+|.+.+++.++++.. .  ..+..+.+....+.++++.+++++|.+.  .+++++|++++..+++++..    ++|.|+
T Consensus        32 ~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl  108 (371)
T PRK13520         32 PHPIARKAHEMFLETN-L--GDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV  108 (371)
T ss_pred             chHHHHHHHHHHHhcC-C--CCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence            6799999999988763 1  1222234556677899999999999753  56778999999998877653    578899


Q ss_pred             EcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          198 ADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       198 ~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      ++...|.++.++++..|.+++.++.+     |+++|++.+.+.          +++|++....+++|.+.|+++|.++|+
T Consensus       109 ~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~----------~~~vi~~~~~~~tG~~~~l~~I~~l~~  178 (371)
T PRK13520        109 VPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN----------TIGIVGIAGTTELGQVDPIPELSKIAL  178 (371)
T ss_pred             ecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC----------CEEEEEEcCCcCCcccCCHHHHHHHHH
Confidence            99999999998888888888877643     778888777531          344444444567899999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc---CCCceeeccHHHHHHHHhcCCceee-----
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA---TEGGFCTGSARVVDHQRLSSSGYVF-----  344 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg---~~GG~i~~~~~~~~~~~~~~~~~~f-----  344 (483)
                      +||+++++|++|+++.++....+.  .+++....+|.++.|.+|...   +.|++++.++++.+.+.. ..+|.+     
T Consensus       179 ~~g~~livD~a~~~~~~~~~~~~~--~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~-~~~~~~~~~~~  255 (371)
T PRK13520        179 ENGIFLHVDAAFGGFVIPFLDDPP--NFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAV-DTPYLTSKKQA  255 (371)
T ss_pred             HcCCCEEEEecchhHHHHhhcCCC--CccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcc-cCccccCCCCc
Confidence            999999999999877643211111  122222456888888899764   234556677777776642 223322     


Q ss_pred             --cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          345 --SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       345 --s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                        .++.++..++++.++++.+.+.  .+++++..++++++.+.|+++ |+++...+..+++.+.+++           .+
T Consensus       256 ~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-----------~~  323 (371)
T PRK13520        256 TLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN-----------PD  323 (371)
T ss_pred             ceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC-----------HH
Confidence              1223445566777788776433  357888999999999999987 8874434567777776631           23


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++.+.+. ++||.+.....        +..+|++++..+|++|+++++++|+++++
T Consensus       324 ~v~~~L~-~~gi~v~~~~~--------~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        324 EVREKLR-ERGWRVSVTRC--------PEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHH-HCCceeccCCC--------CCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            5666544 45998875432        23499999889999999999999998764

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.94  E-value=1.7e-24  Score=221.08  Aligned_cols=334  Identities=13%  Similarity=0.119  Sum_probs=232.4

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCC-CCCCCccc--ChHHHHHHHHHHHhhhCC--CCEEEe-cccHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGS-CGPRGFYG--TIDVHLDCEARIAKFLGT--PDSILY-SYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~-~~~~~~~g--~~~~~~~l~~~La~~~g~--e~~i~~-~sG~~a~  182 (483)
                      .-|+|-++..   . ..+.+.+++.+.++.+.... .+.. ..+  ..+...++++.+|+++|.  ++.+++ +++++++
T Consensus        24 ~iYld~a~~~---~-~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l   98 (406)
T PRK09295         24 LAYLDSAASA---Q-KPSQVIDAEAEFYRHGYAAVHRGIH-TLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGI   98 (406)
T ss_pred             eEEEeCcccc---c-CCHHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHH
Confidence            4688888763   3 55788999988887643211 1111 111  234677899999999986  345555 5566888


Q ss_pred             Hhhhhh----hccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          183 FSAIPC----FCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       183 ~~ai~~----~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ..++.+    +.++||.|++....|.+..    ...+..|.+++.++.+     |+++|++.+.+          ++++|
T Consensus        99 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----------~t~lv  168 (406)
T PRK09295         99 NLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE----------RTRLL  168 (406)
T ss_pred             HHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC----------CcEEE
Confidence            777765    4578999999998887643    2334567788777643     56677666532          26788


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS  328 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~  328 (483)
                      ++..+.+++|.+.|+++|.++|+++|+++++|++|+.|...         .++...++|++++|++|.+|+.| |+++.+
T Consensus       169 ~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~  239 (406)
T PRK09295        169 AITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHP---------VDVQALDCDFYVFSGHKLYGPTGIGILYVK  239 (406)
T ss_pred             EEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccc---------cCchhcCCCEEEeehhhccCCCCcEEEEEc
Confidence            88899999999999999999999999999999999876431         23333456999999999888776 888888


Q ss_pred             HHHHHHHHhcCC-------------------ceeec-CCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhcc
Q 011567          329 ARVVDHQRLSSS-------------------GYVFS-ASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       329 ~~~~~~~~~~~~-------------------~~~fs-~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~  386 (483)
                      +++++.+.....                   ++.|. ++.+.....++.++++.+.+.  +.+.++.+++.+++++.|++
T Consensus       240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  319 (406)
T PRK09295        240 EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_pred             hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            887765431100                   01222 245666777777889888652  45778888999999999998


Q ss_pred             CCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCCHH
Q 011567          387 IHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEA  462 (483)
Q Consensus       387 ~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t~e  462 (483)
                      ++++.+.++ ...+++.+.++..      +   .+++.. .|+++||.++.+..+...   ....+..+|++++..+|++
T Consensus       320 ~~~~~~~~~~~~~~iv~~~~~~~------~---~~~~~~-~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~  389 (406)
T PRK09295        320 VPDLTLYGPQNRLGVIAFNLGKH------H---AYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE  389 (406)
T ss_pred             CCCEEEeCCCCCceEEEEEECCc------C---HHHHHH-HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHH
Confidence            888887754 2356777776421      1   124454 466789999765432110   0111235999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          463 DLVKACESLKRISA  476 (483)
Q Consensus       463 di~~~~~~l~~~~~  476 (483)
                      |||+++++|+++..
T Consensus       390 did~l~~~l~~i~~  403 (406)
T PRK09295        390 EVDRLVAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>PRK09082 methionine aminotransferase; Validated

Probab=99.94  E-value=2.7e-24  Score=218.09  Aligned_cols=337  Identities=16%  Similarity=0.176  Sum_probs=230.9

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-----CEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-----DSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-----~~i~~~sG~~a~~  183 (483)
                      +.++||..+.. .+..++.+.+++.+.++..-.+.   ....|..++...+++.+.+++|..     +.++.+++++++.
T Consensus        30 ~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~  105 (386)
T PRK09082         30 HGAINLSQGFP-DFDGPPYLVEALAYAMAAGHNQY---PPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF  105 (386)
T ss_pred             CCEEEecCCCC-CCCCCHHHHHHHHHHHHcCCCCC---CCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence            45789988733 23246788888888776421211   113456677788888888887752     3444466689999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      .++.+++++||.|+++.++|.++...++..|.+++.++.+      |++++++.++.          ++++|++.+++++
T Consensus       106 ~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~l~~p~NP  175 (386)
T PRK09082        106 AAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP----------RTRLIILNTPHNP  175 (386)
T ss_pred             HHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc----------cceEEEEeCCCCC
Confidence            9999999999999999999999999999889999888763      55666665532          2566777778899


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      +|.+.+   +++|+++|++||+++|+||+|+...++.. +..+..+.+.  .+..++++||||++|..|   ||++++++
T Consensus       176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~iv~~~~  253 (386)
T PRK09082        176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPEL--RERAFVVSSFGKTYHVTGWKVGYCVAPAA  253 (386)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCc--cCcEEEEeechhhccchhhhhhhhhCCHH
Confidence            998855   88999999999999999999987666421 2222233232  234788999999998777   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +++.++.......++.  ++....++.+.++. -+...++++.++++.+.+.+.|++. ++++.....+.++++.+++..
T Consensus       254 l~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~  330 (386)
T PRK09082        254 LSAEFRKVHQYNTFTV--NTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAIS  330 (386)
T ss_pred             HHHHHHHHHhhhcCCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccC
Confidence            9888766443333443  44444444344431 1111235667788889999999874 777665545667777774311


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +      ....++++.++++.||.+.++....... .....+|++++.  +++++++++++|++
T Consensus       331 ~------~~~~~~~~~l~~~~~v~v~pg~~f~~~~-~~~~~~Ri~~~~--~~~~l~~~~~rl~~  385 (386)
T PRK09082        331 D------LDDVEFCQWLTREHGVAAIPLSVFYADP-FPHRLVRLCFAK--QEETLDAAAERLCQ  385 (386)
T ss_pred             C------CCHHHHHHHHHHhCCEEEeCcHHhCCCC-CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            1      0123577776777899999875321111 012349999864  78999999988875

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.3e-24  Score=216.75  Aligned_cols=334  Identities=19%  Similarity=0.218  Sum_probs=241.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCC--CCCCCcccChHHHHHHHHHHHhhhCCC--CEEEe-cccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGS--CGPRGFYGTIDVHLDCEARIAKFLGTP--DSILY-SYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~--~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~~  184 (483)
                      -|+|.+..   +. .+..+.+++.+.++.|..+.  .......-..+..++.++.+++|+|.+  +.|+| .+.++++..
T Consensus        24 vylD~aa~---~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~   99 (405)
T COG0520          24 VYLDNAAT---SQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNL   99 (405)
T ss_pred             EEecCccc---cc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHH
Confidence            47776654   22 46788999999888764322  221111122357788999999999965  45655 555688888


Q ss_pred             hhhhh---ccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          185 AIPCF---CKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       185 ai~~~---~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +..++   .++||.|++....|.+..    ...+..|.++++++.+     |+++++.++..          ++++|.+.
T Consensus       100 va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~----------~Tklvais  169 (405)
T COG0520         100 VARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP----------KTKLVALS  169 (405)
T ss_pred             HHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC----------CceEEEEE
Confidence            88777   588999999888887643    2333457888888754     45566653322          48999999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSAR  330 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~  330 (483)
                      .+.+.+|.+.|+++|+++|+++|+++++|.+|+.+.+.         .++...++|++++|.+|++ |+.| |++.++++
T Consensus       170 ~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~---------idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~  240 (405)
T COG0520         170 HVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLP---------IDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKE  240 (405)
T ss_pred             CccccccccchHHHHHHHHHHcCCEEEEECccccCccC---------CCchhcCCCEEEEcccccccCCCceEEEEEchH
Confidence            99999999999999999999999999999999987542         4555567799999999955 5656 89999999


Q ss_pred             HHHHHHhc-------------------CCceeecCCCcHHH-HHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCC
Q 011567          331 VVDHQRLS-------------------SSGYVFSASLPPYL-ASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       331 ~~~~~~~~-------------------~~~~~fs~~~~p~~-~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      +.+.+...                   ..++.|.++.|++. ..+..++++++++.  .++.++.+++.+++.+.|++++
T Consensus       241 ~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~  320 (405)
T COG0520         241 LLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELP  320 (405)
T ss_pred             HHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88876321                   12233444334443 44445788888754  4688889999999999999999


Q ss_pred             CceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---ccCCCCCceEEEccCCCCHH
Q 011567          389 GLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSEA  462 (483)
Q Consensus       389 ~~~i~~~~---~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---~~~~~~~~lRi~~~~~~t~e  462 (483)
                      ++.+.+++   +++++.+.+...         ...+++.. |.++||.++.+..+..   .....+..+|++++.++|+|
T Consensus       321 ~v~i~g~~~~~r~~~vsF~v~~~---------~~~dv~~~-L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~e  390 (405)
T COG0520         321 GVEIYGPPDADRGGIVSFNVKGI---------HPHDVATL-LDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEE  390 (405)
T ss_pred             CeEEecCCcccCceEEEEEeCCC---------CHHHHHHH-HHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHH
Confidence            99988764   688999988543         13356664 5566899987755432   11112344999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          463 DLVKACESLKRISA  476 (483)
Q Consensus       463 di~~~~~~l~~~~~  476 (483)
                      |||+++++|+++.+
T Consensus       391 did~l~~aL~~~~~  404 (405)
T COG0520         391 DVDRLLEALKKALA  404 (405)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=3.7e-24  Score=218.55  Aligned_cols=335  Identities=17%  Similarity=0.209  Sum_probs=230.1

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEe-cccHHHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILY-SYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~  183 (483)
                      -|+|.++.   |. ..+.+.+++.+.++.. +....++. ..+  ..+...++++.+++++|.+  +.+++ +++++++.
T Consensus        20 ~yld~~~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~   94 (403)
T TIGR01979        20 VYLDSAAT---SQ-KPQQVIDAVAEYYRNSNANVHRGIH-TLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESIN   94 (403)
T ss_pred             EEEeCccc---cC-CCHHHHHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHH
Confidence            47777764   43 5578888888877652 22122211 111  1235678999999999965  34544 66667777


Q ss_pred             hhhhhh----ccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          184 SAIPCF----CKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       184 ~ai~~~----~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .++.++    .++||.|++....|.+..    ......|.+++.++.+     |++++++.+.+          ++++|+
T Consensus        95 ~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~----------~~~lv~  164 (403)
T TIGR01979        95 LVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE----------KTKLVA  164 (403)
T ss_pred             HHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc----------CCeEEE
Confidence            777664    578999999998887743    3344567887777643     56666665532          367888


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~  329 (483)
                      +..+.+++|.+.|+++|.++|++||+++++|++|+.|...         .++...++|++++|++|.+|+.| |+++.++
T Consensus       165 ~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~  235 (403)
T TIGR01979       165 ITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMP---------VDVQALDCDFYVFSGHKMYGPTGIGVLYGKE  235 (403)
T ss_pred             EEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccc---------cCccccCCCEEEEecccccCCCCceEEEEch
Confidence            8889999999999999999999999999999999876432         22222346999999999998776 8888888


Q ss_pred             HHHHHHHhcCC------------------ceeec-CCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCC
Q 011567          330 RVVDHQRLSSS------------------GYVFS-ASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       330 ~~~~~~~~~~~------------------~~~fs-~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      ++++.++....                  ++.|. ++.+...++++.++++.+.+.  +.+.++..++.+++++.|++++
T Consensus       236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~  315 (403)
T TIGR01979       236 ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIP  315 (403)
T ss_pred             HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            87766532111                  11222 234555566667788877642  4578888999999999998888


Q ss_pred             CceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---ccCCCCCceEEEccCCCCH
Q 011567          389 GLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       389 ~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---~~~~~~~~lRi~~~~~~t~  461 (483)
                      ++++..+.    .++++.+.+...      +   ..++.+ .|+++||.++.+.....   .....+..+|++++..+|+
T Consensus       316 g~~~~~~~~~~~~~~~v~~~~~~~------~---~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~  385 (403)
T TIGR01979       316 GLRIYGPRDAEDRGGIISFNVEGV------H---PHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTE  385 (403)
T ss_pred             CEEEeCCCCccccCceEEEEeCCc------C---HHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCH
Confidence            88887542    367888877421      1   124554 46677999976432110   0111134599999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISAVV  478 (483)
Q Consensus       462 edi~~~~~~l~~~~~~~  478 (483)
                      +|+++++++|+++++.+
T Consensus       386 ~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       386 EDIDALVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999877653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.94  E-value=9.7e-24  Score=215.09  Aligned_cols=341  Identities=17%  Similarity=0.177  Sum_probs=231.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~a~~  183 (483)
                      ++.+||..++.--+..+|.+.+++.+.+...+..  +.....|..++...+++.+++++|.     ++.++.+++.+++.
T Consensus        39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~--~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~  116 (405)
T PRK06207         39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQ--AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF  116 (405)
T ss_pred             CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCc--cCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence            4678888764322235578888888888653221  1111335566677777777777673     34555566678999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      .++.+++++||.|++..+.|+.....+...|.+++.++..          |+++|++.+++          .+++|++..
T Consensus       117 ~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~----------~~k~v~l~~  186 (405)
T PRK06207        117 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA----------GVRVFLFSN  186 (405)
T ss_pred             HHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh----------cCeEEEECC
Confidence            9999999999999999999999888888889888766532          56777766643          245666666


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcccc--ccCCCCCceeEEEccccccccCCC---cee
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTE--HCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~--~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      ++|++|.+.+   +++|+++|++||+++|+||+|+...+..  .....  .+...+ +.-++++||||+++.+|   ||+
T Consensus       187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~--~~~~~~~~~~~~~-~~vi~i~SfSK~~~lpGlRiG~i  263 (405)
T PRK06207        187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG--TSYTHLRALPIDP-ENVITIMGPSKTESLSGYRLGVA  263 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCchhcCCCCc-CcEEEEecchhhccCcccceEEE
Confidence            6899999998   7889999999999999999998765532  11111  112222 23588999999998656   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++++++++.+......+..+  .+.+...++.++++.- ....+.+++.+++.+.+.+.|++++++.+..+..+.++++.
T Consensus       264 i~~~~l~~~~~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~  341 (405)
T PRK06207        264 FGSPAIIDRMEKLQAIVSLR--AAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPR  341 (405)
T ss_pred             EcCHHHHHHHHHHHhHhccC--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEe
Confidence            99999988876543333222  2344444444455321 00123566677778888888887767776655567788888


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++....    +   ..++++.++++.||.+.++.....   ..+..+||++..  +++++++++++|++++++.
T Consensus       342 l~~~~~----~---~~~~~~~l~~~~gV~v~pG~~F~~---~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        342 LPRLAV----S---LHDFVKILRLQAGVIVTPGTEFSP---HTADSIRLNFSQ--DHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             CcccCC----C---HHHHHHHHHHhcCEEEeCchHhCC---CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence            753110    1   235677666567999998754321   012459999974  7899999999999988653

>PRK07324 transaminase; Validated

Probab=99.94  E-value=2.1e-24  Score=217.70  Aligned_cols=332  Identities=17%  Similarity=0.169  Sum_probs=229.4

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHH
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTM  182 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~  182 (483)
                      ..|..+++++-+.+.-. .++.+ +++.+++.+...+.       +...-..+|++.+|++++.   ++.++++++++++
T Consensus        23 ~~~~~~~~~~~~e~~~~-~~~~~-~~~~~~~~~~~~~Y-------~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al   93 (373)
T PRK07324         23 IAESCIDSLTLEELLAL-AGKNP-EAFYQELGQKKLTY-------GWIEGSPEFKEAVASLYQNVKPENILQTNGATGAN   93 (373)
T ss_pred             cccCCCCCCcHHHHHhc-cCcch-HHHHHHHhcCCccC-------CCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHH
Confidence            45667777776644322 44566 88888877643322       2222235788999998752   3455567777999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ..++.+++++||.|+++.++|..+...++..|.+++.++..       |++++++.+.   +       ++++|++..++
T Consensus        94 ~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~-------~~kli~i~~p~  163 (373)
T PRK07324         94 FLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR---P-------NTKLICINNAN  163 (373)
T ss_pred             HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC---C-------CCcEEEEeCCC
Confidence            99999999999999999999988888888889888877642       4555554432   2       25688888889


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccH
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSA  329 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~  329 (483)
                      |++|.+.+   +++|+++|++||+++|+||+|+....+  +. ........  +..|+++|+||++|..|   ||+++++
T Consensus       164 NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~--~~-~~s~~~~~--~~~I~~~s~SK~~~~~G~RiG~i~~~~  238 (373)
T PRK07324        164 NPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED--GS-TPSIADLY--EKGISTNSMSKTYSLPGIRVGWIAANE  238 (373)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC--CC-CCChhhcc--CCEEEEecchhhcCCccceeEEEecCH
Confidence            99999998   899999999999999999999764433  11 11112221  22578899999998777   9999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      ++++.++.......++.  +++...++..+++..+. ....++.++++.+.+.+.|++.+++....+..+...++.+...
T Consensus       239 ~li~~~~~~~~~~~~~~--~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~  316 (373)
T PRK07324        239 EVIDILRKYRDYTMICA--GVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD  316 (373)
T ss_pred             HHHHHHHHHhCcEEecC--ChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC
Confidence            99888776544333333  44444555555542211 1234566677778888888776666665554556667776432


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .        ...+++++++++.||.+.++.....     +..+||++.  .+++.++++++.|++++++.
T Consensus       317 ~--------~~~~~~~~ll~~~gv~v~pg~~F~~-----~~~iRis~~--~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        317 M--------PSEDFCLKLLKETGVLLVPGNRFDL-----EGHVRIGYC--CDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             C--------CHHHHHHHHHHhcCEEEECccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence            1        1235777777778999998764432     245999986  46899999999999988753

>PRK07682 hypothetical protein; Validated

Probab=99.94  E-value=6.7e-24  Score=214.78  Aligned_cols=337  Identities=16%  Similarity=0.144  Sum_probs=224.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~  184 (483)
                      .+|+|..+.. .+...+.+.+++.+.++..-.+.+.   ..|..++...+++.+.+.+|.    + +.++.+++++|+..
T Consensus        21 ~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~   96 (378)
T PRK07682         21 GVISLGVGEP-DFVTPWNVREASIRSLEQGYTSYTA---NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDV   96 (378)
T ss_pred             CeEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCCCCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            4788888733 1224567788888877642111111   223344444444444444343    2 34555666799999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      ++++++++||.|+++++.|..+...++..|.+++.++..       |+++|++.+..          +++++++..++|+
T Consensus        97 ~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~~~~p~NP  166 (378)
T PRK07682         97 AMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA----------KTKAILLCSPNNP  166 (378)
T ss_pred             HHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc----------ccEEEEEECCCCC
Confidence            999999999999999999988888888888887766531       56666665532          2556666667889


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      +|.+.+   +++|+++|++|++++|+||+|+...++.....+....+.  .+..++++|+||+||.+|   ||+++++++
T Consensus       167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~  244 (378)
T PRK07682        167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGM--RERTILISGFSKGFAMTGWRLGFIAAPVYF  244 (378)
T ss_pred             cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccc--cCCEEEEecCcccccChhhhhhhhhcCHHH
Confidence            999887   899999999999999999999876654322222222222  234788999999999777   999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      ++.+..... +.. .+.+++...++.++|+..+. ..+.++.++++.+.+.+.|+++ |+.+..+..+.++++.+.....
T Consensus       245 i~~l~~~~~-~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~~~  321 (378)
T PRK07682        245 SEAMLKIHQ-YSM-MCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISSTGL  321 (378)
T ss_pred             HHHHHHHHH-hhc-cCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCCCC
Confidence            988764322 211 12355666666666643211 1346777888899999999886 7766544444555555532110


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                          +   ..++++.+++++||.+.++......   .++.+||++..  +++++++++++|++++++
T Consensus       322 ----~---~~~~~~~ll~~~gv~v~pg~~f~~~---~~~~iRis~~~--~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        322 ----S---SEEFAEQLLLEEKVAVVPGSVFGES---GEGFIRCSYAT--SLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             ----C---HHHHHHHHHHhCCEEEcCchhhCcC---CCCeEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence                1   2356777776679999886533210   13459999874  789999999999998765

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.94  E-value=7.2e-24  Score=214.21  Aligned_cols=326  Identities=17%  Similarity=0.234  Sum_probs=227.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      +|+.+++++.+      ++|.+.++..+.+++. .+  .+..+.+..+.+.++++.|++++|.+  ..+++++|++++..
T Consensus        21 ~~~~~~~~~~~------~~~~~~~a~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~   91 (373)
T TIGR03812        21 DGRILGSMCTN------PHPIAVKAYDMFIETN-LG--DPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQ   91 (373)
T ss_pred             CCcEEEEEeCC------chHHHHHHHHHHhhcC-CC--CcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHH
Confidence            35666777764      6677778877766553 22  22223455677899999999999975  45778889999888


Q ss_pred             hhhhhc------cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          185 AIPCFC------KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       185 ai~~~~------~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ++.++.      ++||.|+++...|.++...++..|.+++.++++     |++++++.+++.         +.+++++.+
T Consensus        92 ~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~---------~~~vv~~~~  162 (373)
T TIGR03812        92 AVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDN---------TIGIVGIAG  162 (373)
T ss_pred             HHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhC---------cEEEEEECC
Confidence            776654      467899999999999999888889998888764     677777776431         234566654


Q ss_pred             ccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccc-c--CCCceeeccH
Q 011567          254 VYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHAL-A--TEGGFCTGSA  329 (483)
Q Consensus       254 v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~l-g--~~GG~i~~~~  329 (483)
                       .+++|.+.|+++|.++|++||+++|+|++|+.+.++-.+.|.. ....+....+|.++.|.+|+. +  +.||++++++
T Consensus       163 -~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~  241 (373)
T TIGR03812       163 -TTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK  241 (373)
T ss_pred             -CCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH
Confidence             5678999999999999999999999999998765431111110 011121124578878889953 2  2356777888


Q ss_pred             HHHHHHHhcCCceeec-------CCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCE
Q 011567          330 RVVDHQRLSSSGYVFS-------ASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPI  400 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs-------~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i  400 (483)
                      ++.+.++.. .+|.+.       ++.++..++++.++++.+.+.  ++..++..++++++++.|+++ ++.....+..++
T Consensus       242 ~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  319 (373)
T TIGR03812       242 SYLKYLSVD-APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNI  319 (373)
T ss_pred             HHHhhhccc-CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceE
Confidence            887766432 234332       234556677777888877532  357889999999999999987 665333456777


Q ss_pred             EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       401 ~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +.+.+++           ..++.+.+ .++||+++....        +..||++++..+|++|+++++++|++
T Consensus       320 v~~~~~~-----------~~~v~~~L-~~~gi~v~~~~~--------~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       320 VAFEVDD-----------PEEVRKKL-RDRGWYVSVTRC--------PKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             EEEEeCC-----------HHHHHHHH-HHCCceeccCCC--------CCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            7776631           12566654 456999875432        24599999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.94  E-value=5.9e-24  Score=218.32  Aligned_cols=337  Identities=15%  Similarity=0.162  Sum_probs=230.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEe-cccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILY-SYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~~  184 (483)
                      -|+|.++.   |. ..+.+.+++.+.++++..+........+  ..+...++++.+++++|.+  +.+++ +++++++..
T Consensus        34 iyLd~a~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~  109 (424)
T PLN02855         34 VYLDNAAT---SQ-KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINL  109 (424)
T ss_pred             EEeeCccc---cC-CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHH
Confidence            57777654   33 5578899998888775432211111111  1235678999999999973  34555 666788877


Q ss_pred             hhhh----hccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          185 AIPC----FCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       185 ai~~----~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ++.+    ..++||.|++....|.+....    .+..|.+++.++.+     |++++++.+..          ++++|++
T Consensus       110 i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~----------~t~lv~i  179 (424)
T PLN02855        110 VAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE----------KTKLVAT  179 (424)
T ss_pred             HHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc----------CceEEEE
Confidence            7765    357899999988888765432    34557787776542     56667666632          3678899


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~  330 (483)
                      ..+.+++|.+.|+++|.++|++||+++++|++|+.|...         +++...++|++++|++|.+|+.| ||++.+++
T Consensus       180 ~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~  250 (424)
T PLN02855        180 HHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMP---------VDVQTLGADFLVASSHKMCGPTGIGFLWGKSD  250 (424)
T ss_pred             eCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcC---------CCchhcCCCEEEeecccccCCCccEEEEEchh
Confidence            999999999999999999999999999999999865321         23332345999999999888766 89888888


Q ss_pred             HHHHHHhcCCc------------------eeecC-CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCC
Q 011567          331 VVDHQRLSSSG------------------YVFSA-SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       331 ~~~~~~~~~~~------------------~~fs~-~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      +++.+.....+                  -.|.. +.+....++..++++.+.+.  +++.++..++.+++++.|+++++
T Consensus       251 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g  330 (424)
T PLN02855        251 LLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPG  330 (424)
T ss_pred             hhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            87665322100                  01222 34455556666788877642  46778889999999999988888


Q ss_pred             ceeecCC------CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---ccCCCCCceEEEccCCCC
Q 011567          390 LSIASNP------ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       390 ~~i~~~~------~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---~~~~~~~~lRi~~~~~~t  460 (483)
                      +++.++.      .++++.+.+...      +   ..++.+.+.+++||.++.+.....   .....+..||++++..+|
T Consensus       331 ~~i~~~~~~~~~~r~~~v~~~~~~~------~---~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt  401 (424)
T PLN02855        331 VRIYGPKPSEGVGRAALCAFNVEGI------H---PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT  401 (424)
T ss_pred             EEEeCCCcccccCcccEEEEEECCc------C---HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC
Confidence            8887532      346777776421      1   224666533333999886542210   000112459999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAVV  478 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~~  478 (483)
                      ++||++++++|+++++.+
T Consensus       402 ~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        402 KEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.4e-23  Score=213.14  Aligned_cols=342  Identities=11%  Similarity=0.110  Sum_probs=232.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEe-cccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILY-SYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~-~sG~~a~~~  184 (483)
                      .++++..+.+- +..++.+.+|+.+.+.....+  ......|..+....+++.+++++|.    ++.+++ +++.+++..
T Consensus        28 ~~~~l~~g~~~-~~~~~~~~~a~~~~~~~~~~~--~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         28 GTISLGQGVVS-YPPPPEAIEALNNFLANPENH--KYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             CeEEccCCCCC-CCCCHHHHHHHHHHHhCCCCC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            46777776331 335678888888877643221  1222346677888899999998884    445555 455578888


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++.+++++||.|+++.++|......+...|.+++.++.+     |++++++.++.          ++++|++..+++++|
T Consensus       105 ~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~klv~~~~p~NPtG  174 (389)
T PRK05957        105 AILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP----------KTRAIVTISPNNPTG  174 (389)
T ss_pred             HHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc----------CceEEEEeCCCCCCC
Confidence            888888999999999988877777777788888777643     56666665532          256777777899999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC-CCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV-PVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v-~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      .+.|   +++|+++|++||+++|+||+|+...++..  .......+ +.....|++.|+||.+|..|   ||++++++++
T Consensus       175 ~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~  252 (389)
T PRK05957        175 VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLL  252 (389)
T ss_pred             cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHH
Confidence            9998   88999999999999999999986655421  11111111 11234688899999999777   9999999999


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCc-eeecCCCCCEEEEEecCCCC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGL-SIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~-~i~~~~~~~i~~l~l~~~~~  410 (483)
                      +.+......+..+  .+.....++..+++.-. ...+..++++++.+.+.+.|++++++ .+..+..+.++++.+.... 
T Consensus       253 ~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~-  329 (389)
T PRK05957        253 EAIKKIQDTILIC--PPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL-  329 (389)
T ss_pred             HHHHHHHhhcccC--CCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCC-
Confidence            8876543322222  23344444444443211 01235567788888898999877563 5444434566777764321 


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                             ...++++++++++||.+.++.......   ...+||++.. .++++++++++.|.+.+++++.
T Consensus       330 -------~~~~~~~~l~~~~gv~v~pg~~f~~~~---~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~~~  388 (389)
T PRK05957        330 -------NDFELVKQLIREYRVAVIPGTTFGMKN---GCYLRIAYGA-LQKATAKEGIERLVQGLKTIVQ  388 (389)
T ss_pred             -------ChHHHHHHHHHHCCEEEccchhhCCCC---CCEEEEEEec-CCHHHHHHHHHHHHHHHHhhhc
Confidence                   123577777766799999875432210   2359999865 5799999999999999988764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.94  E-value=8.4e-24  Score=212.35  Aligned_cols=291  Identities=16%  Similarity=0.204  Sum_probs=207.4

Q ss_pred             hHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhhhhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecC-----
Q 011567          153 IDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----  222 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~-----  222 (483)
                      .+...++++.+++++|.+  + .+++++|++++..++.++.++||.|++....|++  ....++..|.+++.++.     
T Consensus        31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  110 (356)
T cd06451          31 LALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEA  110 (356)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCC
Confidence            356889999999999973  3 4456778999999999999999999988777765  34556677888777653     


Q ss_pred             CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       223 ~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                      .|.+++++.+++.         ++++|++.++.+++|.+.|+++|.++|++||+++++|++|++|...         +.+
T Consensus       111 ~~~~~l~~~i~~~---------~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~---------~~~  172 (356)
T cd06451         111 VSPEEIAEALEQH---------DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEP---------FRM  172 (356)
T ss_pred             CCHHHHHHHHhcc---------CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcc---------ccc
Confidence            3677887777531         2567766677788999999999999999999999999999865321         122


Q ss_pred             CCCceeEEEccccccccCC-C-ceeeccHHHHHHHHh--cCCce---------------eecCCCcHHHHHHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRL--SSSGY---------------VFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~--~~~~~---------------~fs~~~~p~~~aaa~~al~~l  363 (483)
                      ...++|++++|++|+++.+ | |+++.+++.++.+..  ...++               .++.+.++...+++.++++.+
T Consensus       173 ~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l  252 (356)
T cd06451         173 DEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLI  252 (356)
T ss_pred             cccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHH
Confidence            2234588899999999843 4 899888888877653  11111               123344555566677788776


Q ss_pred             hcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEE-EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          364 EEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIV-FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       364 ~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~-~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .+.  +.+.++.+++.+++++.|.++ |+++..++  .++.+ ++.++...        ...++++.+.++.||.+.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~~gI~~~~g~  323 (356)
T cd06451         253 LEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGV--------DGDEVVRRLMKRYNIEIAGGL  323 (356)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCC--------CHHHHHHHHHHhCCEEEeccc
Confidence            543  457788889999999999886 87775432  23333 44443211        133567765443399998754


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .+.     .+..||++++..+|++|+++++++|++++
T Consensus       324 ~~~-----~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         324 GPT-----AGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             ccc-----cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            322     12459999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-23  Score=214.51  Aligned_cols=340  Identities=16%  Similarity=0.178  Sum_probs=223.6

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CCC-----CEEEeccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GTP-----DSILYSYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~e-----~~i~~~sG  178 (483)
                      |++++||+++.. .+...|.+.+++.+.+......  +.. ..|.    .+|++.+|+++    |..     +.|+.++|
T Consensus        43 ~~~~i~L~~g~p-~~~~~~~~~~~l~~~~~~~~~~--~Y~-~~G~----~~lr~aia~~~~~~~g~~~~~~~~~I~it~G  114 (410)
T PRK06290         43 DMELIDMGVGEP-DEMADESVVEVLCEEAKKPENR--GYA-DNGI----QEFKEAAARYMEKVFGVKDIDPVTEVIHSIG  114 (410)
T ss_pred             CCCeEEcCCCCC-CCCCCHHHHHHHHHHHhCCCCC--CCC-CCCc----HHHHHHHHHHHHHHcCCCcCCCcceEEEccC
Confidence            567899999843 2334577888887766432111  111 1233    45555565553    432     35666665


Q ss_pred             -HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          179 -LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       179 -~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                       .+++..++.+++++||.|+++.+.|..+...++..|.+++.++..       |++++++.+..          ++++|+
T Consensus       115 s~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~----------~~k~i~  184 (410)
T PRK06290        115 SKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE----------KAKLLY  184 (410)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc----------cceEEE
Confidence             478888899999999999999999988888888889998887643       44555544422          256777


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ce
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      +..++|++|.+.+   +++|+++|++||++||+||+|....++.....+.+..+.  .+.+|+++||||++|.+|   ||
T Consensus       185 l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~--~~~~I~i~SfSK~~g~~GlRiG~  262 (410)
T PRK06290        185 LNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGA--KEVGVEIHSLSKAYNMTGWRLAF  262 (410)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCc--cccEEEEeechhhcCCchhheEe
Confidence            6666899999999   688999999999999999999876553211122221111  245799999999998778   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      +++++++++.++.....+..+.  +.....++.++++.-+..++.+++++++.+.+.+.|++. |+.+..+..+.++++.
T Consensus       263 ii~~~~l~~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~v~  339 (410)
T PRK06290        263 VVGNELIVKAFATVKDNNDSGQ--FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVK  339 (410)
T ss_pred             EEeCHHHHHHHHHHHhccccCC--cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEEEE
Confidence            9999999988865543332222  233334444455321112346777888889999999886 7776644455566677


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-CCCCHHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +++..... .......++++.+++++++.+.+....       ...+||++. ...++++.++++++|++.+..+
T Consensus       340 lp~~~~~~-~~~~~~~~~~~~Ll~~~~v~~~p~~~~-------~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        340 APKGTKSG-IKFENAEEFSQYLIKEKLISTVPWDDA-------GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             CCCccccC-CCCCCHHHHHHHHHHhCCEEEECCccc-------cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            75321000 000113367888777766665543211       134999885 4568999999999999988765

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=7.3e-24  Score=214.17  Aligned_cols=319  Identities=18%  Similarity=0.194  Sum_probs=221.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCC-C-CCcccChHHHHHHHHHHHhhhCCC---CEEEecccHHHHHhhhhhhcc---CCcE
Q 011567          124 GHEKLLESCTSALEKYGVGSCG-P-RGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCK---KGDL  195 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~-~-~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~a~~~ai~~~~~---~gdi  195 (483)
                      ..+.+.++..+.++.+...++. . .......+...++++.+++++|.+   +.++.+++++++..++.++..   +||.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~   90 (373)
T cd06453          11 KPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDE   90 (373)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCE
Confidence            4578889988888765332211 1 111123456788999999999976   455567778899999988876   8999


Q ss_pred             EEEcCCchhHHHh----HhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          196 IVADEGVHWGIQN----GLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       196 I~~~~~~h~s~~~----g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      |++....|.+...    ..+..|.+++.++.+     |++++++.+.+          .+++|++..+.+++|.+.|+++
T Consensus        91 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~~~~~tG~~~~~~~  160 (373)
T cd06453          91 IVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE----------RTKLVAVTHVSNVLGTINPVKE  160 (373)
T ss_pred             EEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC----------CceEEEEeCcccccCCcCCHHH
Confidence            9999999988533    233567788777654     67777776643          2678888888889999999999


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCCc----
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG----  341 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~~----  341 (483)
                      |.++|++||+++++|++++.|.+..         .+....+|++++|++|++++.| |++++++++++.++....+    
T Consensus       161 i~~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~  231 (373)
T cd06453         161 IGEIAHEAGVPVLVDGAQSAGHMPV---------DVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMI  231 (373)
T ss_pred             HHHHHHHcCCEEEEEhhhhcCceee---------eccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcc
Confidence            9999999999999999998664321         1111245899999999998655 8888888887765432111    


Q ss_pred             --------------eeecC-CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC--CCCCEEE
Q 011567          342 --------------YVFSA-SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN--PESPIVF  402 (483)
Q Consensus       342 --------------~~fs~-~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~i~~  402 (483)
                                    ..|.. +.+...+.+..++++.+.+.  +++.++.+++.+++++.|++++++++..+  ..++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  311 (373)
T cd06453         232 EEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVS  311 (373)
T ss_pred             ccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEE
Confidence                          12322 33444444555677777643  45778888899999999998878887643  2466777


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      +.++..         ...++.+. |.++||.+..+..+..+   ....+..||++++..+|++|+|+++++|
T Consensus       312 ~~~~~~---------~~~~i~~~-l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         312 FNLEGI---------HPHDVATI-LDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             EEECCc---------CHHHHHHH-HHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            776421         12356665 44579998765432110   0111345999999999999999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.94  E-value=7e-24  Score=205.62  Aligned_cols=333  Identities=18%  Similarity=0.185  Sum_probs=238.8

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCcccCh--HHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYGTI--DVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g~~--~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      |+|.+...+    .+|++.+++...+..+ |..  .+-..+|..  ...++.++++|+.+|.+  +.+|+++|++++..+
T Consensus         4 YlD~~ATTp----~~~~v~~~m~~~~~~~fgNP--sS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNla   77 (386)
T COG1104           4 YLDNAATTP----VDPEVLEAMLPYLTEVFGNP--SSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLA   77 (386)
T ss_pred             cccccccCC----CCHHHHHHHHHHHHhhcCCc--cchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHH
Confidence            666666543    5689999999998875 443  334455643  47788999999999964  455557888999988


Q ss_pred             hhh--hc----cCCcEEEEcCCchhHHHhHhhhc---CCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          186 IPC--FC----KKGDLIVADEGVHWGIQNGLYLS---RSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       186 i~~--~~----~~gdiI~~~~~~h~s~~~g~~~s---~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      |+.  ..    +++..|++....|.++.+.++..   |.++.+.+.+     |+++|++.|+.          .+.+|.+
T Consensus        78 I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~----------~T~LVSi  147 (386)
T COG1104          78 IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP----------DTILVSI  147 (386)
T ss_pred             HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC----------CceEEEE
Confidence            876  32    36789999999999999888755   7777777655     78888887764          3789999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~  330 (483)
                      -.++|.+|.+.|+++|.++|+++++++++|.+|++|.+.         .++....+|+++.|-+|..|+.| |++..++.
T Consensus       148 m~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkip---------i~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~  218 (386)
T COG1104         148 MHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIP---------IDLEELGVDLLSFSAHKFGGPKGIGALYVRPG  218 (386)
T ss_pred             EecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCcee---------ccccccCcceEEeehhhccCCCceEEEEECCC
Confidence            999999999999999999999999999999999988654         23332347999999999999777 76655443


Q ss_pred             HH-HHHHhcCCce---eecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccC-CCceeecCC--C-CCEE
Q 011567          331 VV-DHQRLSSSGY---VFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDI-HGLSIASNP--E-SPIV  401 (483)
Q Consensus       331 ~~-~~~~~~~~~~---~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~-~~~~i~~~~--~-~~i~  401 (483)
                      +. +.+.. +.++   .-+++.|....++.-+|+++.. +.+....++..+.++|.+.|.+. +++.+.+..  . ..++
T Consensus       219 ~~~~p~i~-GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~  297 (386)
T COG1104         219 VRLEPLIH-GGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNIL  297 (386)
T ss_pred             CccCceec-cCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeE
Confidence            32 22211 1121   1233455555555555555543 33567888899999999999865 677776542  2 3467


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC--------------CCCceEEEccCCCCHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR--------------LPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~--------------~~~~lRi~~~~~~t~edi~~~  467 (483)
                      .+.++.-.+         +.+. ..|+..||.++.+..++-....              ...+|||+++...|++|++++
T Consensus       298 ~~~f~gv~g---------E~ll-~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~  367 (386)
T COG1104         298 NFSFPGVEG---------ESLL-LALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAA  367 (386)
T ss_pred             EEEeCCCcH---------HHHH-HhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHH
Confidence            777754321         1233 3577779999877654432111              123599999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          468 CESLKRISAVVL  479 (483)
Q Consensus       468 ~~~l~~~~~~~~  479 (483)
                      +++++++++++.
T Consensus       368 ~~~l~~~i~~lr  379 (386)
T COG1104         368 AEALKEIIKRLR  379 (386)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=7.3e-24  Score=213.02  Aligned_cols=318  Identities=17%  Similarity=0.190  Sum_probs=222.6

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~a  185 (483)
                      ++++||+++ +.+|  .+|.+.+++.+.++....         .......++++.+|++++.+ +.+++ +++++++..+
T Consensus        29 ~~~i~l~~n~~~~~--~~~~v~~a~~~~~~~~~~---------~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~   97 (359)
T PRK03158         29 EKIVKLASNENPYG--PSPKVKEAIAAHLDELAL---------YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMI   97 (359)
T ss_pred             CceEEecCCCCCCC--CCHHHHHHHHHHHHHhhc---------CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHH
Confidence            378999998 4554  468899999888775321         11123578999999999853 44555 5556888888


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      +.+++++||.|+++.+++..+...+...|.++..++..    |++++++.+..          +++++++..+++++|.+
T Consensus        98 ~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~i~~p~NPtG~~  167 (359)
T PRK03158         98 SRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLKDGGHDLEAMLKAIDE----------QTKIVWICNPNNPTGTY  167 (359)
T ss_pred             HHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecCCCCcCHHHHHHhcCC----------CCCEEEEeCCCCCCCCC
Confidence            88999999999999999888877788888888777643    45555544421          25566667778999999


Q ss_pred             cChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHH
Q 011567          262 APLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR  336 (483)
Q Consensus       262 ~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~  336 (483)
                      .|.+++.++++.  +|+++|+||+|..+..+..........+  ..+..++++||||++|..|   ||+++++++++.++
T Consensus       168 ~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~  245 (359)
T PRK03158        168 VNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLE--KYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLN  245 (359)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHH--hcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHH
Confidence            999998888887  5999999999986654321111111111  1234788899999999777   99999999998876


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                      .....  +  +.+++...++.++++.-...++..+.++++.+.+.+.|++. ++.+. ++.++++++.+..       + 
T Consensus       246 ~~~~~--~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~-------~-  311 (359)
T PRK03158        246 IARPP--F--NTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGR-------D-  311 (359)
T ss_pred             HhcCC--C--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCC-------C-
Confidence            54332  2  34666767676666422112235556677777788888776 77665 3467777777631       1 


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                        ..++++.+++ +||.+.++.....     ++.+||++.   +.+|+++++++|+++
T Consensus       312 --~~~~~~~l~~-~gv~v~~g~~f~~-----~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        312 --ANELFEALLK-KGYIVRSGAALGF-----PTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             --HHHHHHHHHH-CCeEEeeCCCCCC-----CCeEEEecC---CHHHHHHHHHHHHHh
Confidence              2356776554 6999998654321     345999985   899999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.94  E-value=9.4e-24  Score=210.91  Aligned_cols=330  Identities=16%  Similarity=0.150  Sum_probs=219.2

Q ss_pred             EeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEecccHHHHHh
Q 011567          113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYGLSTMFS  184 (483)
Q Consensus       113 d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~sG~~a~~~  184 (483)
                      |++.+++ .+..+|.+.++..+  ..++.+....    ++.+-..++++.++++++        .++.++.++|++++..
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~   74 (350)
T cd00609           2 DLSIGEP-DFPPPPEVLEALAA--AALRAGLLGY----YPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL   74 (350)
T ss_pred             CCCCCCC-CCCCCHHHHHHHHH--HhhccCCCCC----CCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            5555544 44466777777665  3333333222    223334555555555554        3356666888899999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHH---HHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL---RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~L---e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      ++.++.++||.|+++.+.|.++...++..+.+++.++.++...+   ++.++....      ..+++|++++.++++|.+
T Consensus        75 ~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~v~i~~~~~~tG~~  148 (350)
T cd00609          75 LLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT------PKTKLLYLNNPNNPTGAV  148 (350)
T ss_pred             HHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcC------ccceEEEEECCCCCCCcc
Confidence            99999999999999999999999999999988887776532111   122222111      136788888899999999


Q ss_pred             cChH---HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccH-HHHHH
Q 011567          262 APLD---ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSA-RVVDH  334 (483)
Q Consensus       262 ~~L~---~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~-~~~~~  334 (483)
                      .|++   +|+++|++||+++|+||+|+.+..+..+..  ........+.|++++|++|+++..|   |++++++ ++.+.
T Consensus       149 ~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~  226 (350)
T cd00609         149 LSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP--ALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLER  226 (350)
T ss_pred             cCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc--cccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHH
Confidence            9854   555899999999999999987765533322  1122223445899999999997433   8888888 78888


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      ++.......  ...++..+.++..+++.. +..+...++++++.+++.+.|.+.....+.....+.++++.+...     
T Consensus       227 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-----  299 (350)
T cd00609         227 LKKLLPYTT--SGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-----  299 (350)
T ss_pred             HHHHHHhcc--cCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-----
Confidence            776543322  234566666666677655 333567888899999999999887443323334555666666432     


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                          ...+...+++++.||.+.....+..   ..+..+|++++..  ++|+++++++|++
T Consensus       300 ----~~~~~~~~~l~~~gi~i~~~~~~~~---~~~~~iRi~~~~~--~~~i~~~~~al~~  350 (350)
T cd00609         300 ----DDEEFLERLLLEAGVVVRPGSAFGE---GGEGFVRLSFATP--EEELEEALERLAE  350 (350)
T ss_pred             ----ChHHHHHHHHHhCCEEEeccccccc---CCCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence                0112344567777999987644321   1134599999876  9999999998863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK02948 cysteine desulfurase; Provisional

Probab=99.94  E-value=7.2e-24  Score=214.80  Aligned_cols=334  Identities=15%  Similarity=0.147  Sum_probs=223.8

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc-cChHHHHHHHHHHHhhhCC-CCEEEe-cccHHHHHhhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLGT-PDSILY-SYGLSTMFSAIP  187 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~-g~~~~~~~l~~~La~~~g~-e~~i~~-~sG~~a~~~ai~  187 (483)
                      |+|-++.   +. .++.+.+++.+.++.+..+..+..... ...+...++++.+++++|. ++.+++ +++++++..++.
T Consensus         3 yld~a~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~   78 (381)
T PRK02948          3 YLDYAAT---TP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQ   78 (381)
T ss_pred             eccCCCC---CC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHH
Confidence            5555543   33 568899999988876543322211111 1235678999999999985 456666 555788888777


Q ss_pred             hhc----cCCcEEEEcCCchhHHHhH---hhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          188 CFC----KKGDLIVADEGVHWGIQNG---LYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       188 ~~~----~~gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ++.    +++|.|+++...|.++...   ++..|.++..++.     .|+++|++.+++          .+++|++++++
T Consensus        79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----------~~~lv~~~~~~  148 (381)
T PRK02948         79 SLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP----------DTVLASIQHAN  148 (381)
T ss_pred             HHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC----------CCEEEEEECCc
Confidence            664    5789999999999876654   3445777766653     367777766532          26799999999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH-HH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV-VD  333 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~-~~  333 (483)
                      +++|.+.|+++|.++|++||+++++|+++++|..+-         ++...++|+++.|++|.+|+.| |+++.++++ ..
T Consensus       149 n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~---------~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~  219 (381)
T PRK02948        149 SEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPI---------DVFEMGIDSLSVSAHKIYGPKGVGAVYINPQVRWK  219 (381)
T ss_pred             CCcEeehhHHHHHHHHHHcCCEEEEEChhhcccccc---------CcccCCCCEEEecHHhcCCCCcEEEEEEcCCCCCC
Confidence            999999999999999999999999999998765431         2222346999999999999776 777766654 11


Q ss_pred             HHHh---cCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-C----CCEEEEE
Q 011567          334 HQRL---SSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNP-E----SPIVFLI  404 (483)
Q Consensus       334 ~~~~---~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~----~~i~~l~  404 (483)
                      ....   ...++.. ++.|....+++.++++.+ +..++.+++++++.+++++.|+++ ++++.... .    ..++.+.
T Consensus       220 ~~~~~~~~~~~~~~-~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~  297 (381)
T PRK02948        220 PVFPGTTHEKGFRP-GTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVT  297 (381)
T ss_pred             CcccCCCCCCCcCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEE
Confidence            1110   0111222 245666667777777765 333567899999999999999887 65543221 1    1244444


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc------------cc--CCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML------------DK--CRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~------------~~--~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      +...      +   ..++... |.++||.++.+..+..            ..  ......+|++++..+|++|+++++++
T Consensus       298 ~~~~------~---~~~~~~~-l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~  367 (381)
T PRK02948        298 IKGI------E---GQYTMLE-CNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHA  367 (381)
T ss_pred             eCCC------C---HHHHHHh-cccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHH
Confidence            4211      1   1234554 4567999986542110            00  00024599999999999999999999


Q ss_pred             HHHHHHHHH
Q 011567          471 LKRISAVVL  479 (483)
Q Consensus       471 l~~~~~~~~  479 (483)
                      |+++++++-
T Consensus       368 l~~~~~~~~  376 (381)
T PRK02948        368 LETIGNQFY  376 (381)
T ss_pred             HHHHHHHHh
Confidence            999887654

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=4.8e-24  Score=213.29  Aligned_cols=317  Identities=17%  Similarity=0.196  Sum_probs=222.6

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHhh
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFSA  185 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~a  185 (483)
                      +.++|||+++++ ++..+|++.+++.+++... .       .|+... ..++++.+|++++.+ +.+++ +++++++..+
T Consensus        18 ~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~-~-------~y~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~   87 (346)
T TIGR01141        18 GKEVIKLNSNEN-PFGPPPKAKEALRAEADKL-H-------RYPDPD-PAELKQALADYYGVDPEQILLGNGSDEIIELL   87 (346)
T ss_pred             CCceEEccCCCC-CCCCCHHHHHHHHHhHHHh-h-------cCCCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHH
Confidence            357999999865 5556789999999876532 1       122222 268999999999853 44445 5556788888


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      +.+++++||.|+++.+.|......+...|.+++.++.     .|++.+++.+   ..       .+++|++..+++++|.
T Consensus        88 ~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~---~~-------~~~~v~l~~p~NptG~  157 (346)
T TIGR01141        88 IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAI---DD-------KPKLVFLCSPNNPTGN  157 (346)
T ss_pred             HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhc---CC-------CCCEEEEeCCCCCCCC
Confidence            8889999999999998887766667778888887764     2556666543   11       2667777788899999


Q ss_pred             ccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          261 IAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       261 i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      +.|++++.++|+.+  ++++|+||+|+.....  +. ........  +.+++++|++|++|..|   ||+++++++.+.+
T Consensus       158 ~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~--~~-~~~~~~~~--~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~  232 (346)
T TIGR01141       158 LLSRSDIEAVLERTPEDALVVVDEAYGEFSGE--PS-TLPLLAEY--PNLIVLRTLSKAFGLAGLRIGYAIANAEIIDAL  232 (346)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEECchhhhcCC--cc-HHHHHhhC--CCEEEEehhhHhhhchhhhceeeecCHHHHHHH
Confidence            99999999999987  9999999999743211  11 11111111  22688899999997666   9999999998888


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....  +  +.++....++.+.++......+..++++++.+.+++.|++++|+.+. ++.++++++.+..        
T Consensus       233 ~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~--------  299 (346)
T TIGR01141       233 NKVRAP--F--NLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR--------  299 (346)
T ss_pred             HhccCC--C--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC--------
Confidence            754332  2  23566666666665443222356788888999999999887788765 3467788887642        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                        ..+++.+.++ ++||.+.+......    .+..+|++++   |++|+++++++|+
T Consensus       300 --~~~~~~~~L~-~~gI~v~~g~~f~~----~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       300 --DADALFEALL-EKGIIVRDLNSYPG----LPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             --CHHHHHHHHH-HCCeEEEeCCCcCC----CCCeEEEecC---CHHHHHHHHHHhC
Confidence              1235676655 46999998754211    1345999975   8999999998874

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=6.7e-24  Score=213.49  Aligned_cols=318  Identities=19%  Similarity=0.211  Sum_probs=215.9

Q ss_pred             ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccH-HH
Q 011567          106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGL-ST  181 (483)
Q Consensus       106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~-~a  181 (483)
                      .++++++||+++ |++|.  +|.+++++.+.+....        .|+. +...++++.+|+++|.+ +.+++ ++|+ ++
T Consensus        31 ~~~~~~i~l~~~~~~~~~--~~~~~~~~~~~~~~~~--------~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~   99 (361)
T PRK00950         31 IDPESIIKLGSNENPLGP--SPKAVEAIEKELSKIH--------RYPE-PDAPELREALSKYTGVPVENIIVGGDGMDEV   99 (361)
T ss_pred             CCccceEEccCCCCCCCC--CHHHHHHHHHHHHhhc--------CCCC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHH
Confidence            356789999998 67774  5889999888776531        1221 12488999999999964 34444 6675 56


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-C----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-N----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      +..+++++.++||.|+++.+.+..+...++..|.+++.++. +    |++++++.+..          +++++++..+++
T Consensus       100 i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~~~~p~n  169 (361)
T PRK00950        100 IDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITE----------KTKVIFLCTPNN  169 (361)
T ss_pred             HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhcc----------CCCEEEEeCCCC
Confidence            77888888899999999888887777778888888887753 2    45566554422          255666667889


Q ss_pred             CCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567          257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD  333 (483)
Q Consensus       257 ~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~  333 (483)
                      ++|.+.|.+++.++|+++|+++|+||+|+... +.....+...     .+..++++||||++|..|   ||+++++++++
T Consensus       170 ptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~-----~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~  243 (361)
T PRK00950        170 PTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALE-----YDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID  243 (361)
T ss_pred             CCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHh-----cCCEEEEEeehHhhcCchhhcchhcCCHHHHH
Confidence            99999999999999999999999999997543 2211111111     122578899999999777   99999999988


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      .++.....+    +.++...+++.++++..+...+..++++++.+++.+.|.    +.+. ++.++++++.+...     
T Consensus       244 ~~~~~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~-----  309 (361)
T PRK00950        244 YYMRAKTPF----SLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPM-----  309 (361)
T ss_pred             HHHHhcCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCC-----
Confidence            876654333    235555555655654211112344555555555655554    4443 34677888877211     


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                          ...++++.+++ +||.+.+......   ..+..||++++   +.+|+++++++|++++
T Consensus       310 ----~~~~~~~~l~~-~gv~v~~~~~f~~---~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        310 ----TAKEFCEELLK-RGVIVRDCTSFRG---LGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             ----CHHHHHHHHHH-CCEEEeeCCccCC---CCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence                12356776655 5999987542210   01245999985   7899999999998865

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.2e-23  Score=212.40  Aligned_cols=335  Identities=13%  Similarity=0.143  Sum_probs=223.7

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CC-CEEEe-cccHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TP-DSILY-SYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e-~~i~~-~sG~~a  181 (483)
                      .|++++||+.+++ .+...+.+.+++.+.+.+...  .+.. ..|..++...+++.+.+..|   .+ +.++. +++.++
T Consensus        30 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~--~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  105 (399)
T PRK07681         30 AGHKMIDLSIGNP-DMPPADFVREEMVHTANQKES--YGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG  105 (399)
T ss_pred             cCCCeEEeCCCCC-CCCCCHHHHHHHHHHHhcccc--CCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence            3567899998854 233567888888887764211  1100 12333334444444433333   22 44554 555688


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +..++.+++++||.|+++.+.|..+...+...|.+++.++.+       |++++++.+.   .       ++++|++..+
T Consensus       106 l~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~---~-------~~k~v~l~~P  175 (399)
T PRK07681        106 LVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA---D-------KAKMMILNFP  175 (399)
T ss_pred             HHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc---c-------cceEEEEeCC
Confidence            888899999999999999999999888888999999888753       4455544442   1       2566777666


Q ss_pred             cCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ceeec
Q 011567          255 YQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       255 ~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      +|++|.+.+   +++|+++|++||+++|+||+|+...+..  ........++. .+..|+++||||++|.+|   ||+++
T Consensus       176 ~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~  253 (399)
T PRK07681        176 GNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG--NKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG  253 (399)
T ss_pred             CCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC--CCCCChhhCCCCcccEEEEeecccccCCccceeEEEec
Confidence            889999998   7889999999999999999998765532  21111122221 234688899999998777   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.++.......++.  +.....++.++++.-. ..++.++.++++.+.+.+.|++. |+.+..+..+.++++.++
T Consensus       254 ~~~l~~~~~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~  330 (399)
T PRK07681        254 NEEIVRALTQFKSNTDYGV--FLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIP  330 (399)
T ss_pred             CHHHHHHHHHHHhhcccCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECC
Confidence            9999988765433233333  3444444445553211 11345667788888899999886 777655556788888875


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +..        ...+++..+++++||.+.++......   .++.+||++.  .+++++++++++|++
T Consensus       331 ~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~---~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        331 KGW--------TSLSFAYALMDRANVVVTPGHAFGPH---GEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             CCC--------CHHHHHHHHHHhCCEEEeCChhhCcC---CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            321        12357777777679999887543210   1245999987  578999999999987

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=213.02  Aligned_cols=331  Identities=16%  Similarity=0.221  Sum_probs=221.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEEecccHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYGLST  181 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~sG~~a  181 (483)
                      .++||..++. .+...+.+.+++.+.+...-.       .|+...-..+|++.+|+++    |    .++.++.+++.++
T Consensus        30 ~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~a  101 (384)
T PRK06348         30 DIIDLSLGDP-DLITDESIINAAFEDAKKGHT-------RYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHG  101 (384)
T ss_pred             CcEEcCCCCC-CCCCCHHHHHHHHHHHhcCCC-------CCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHH
Confidence            4688888743 243457777766655433111       1222222345666666665    3    2345555777788


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +..++.+++++||.|+++.++|..+...+...|.+++.++.       -|+++|++.++.          ++++|++...
T Consensus       102 l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~l~~p  171 (384)
T PRK06348        102 MYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS----------KTKAIILNSP  171 (384)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc----------CccEEEEeCC
Confidence            99999999999999999999999998888888888877652       256667665532          1455566677


Q ss_pred             cCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567          255 YQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS  328 (483)
Q Consensus       255 ~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~  328 (483)
                      +|++|.+.+   +++|.++|++||+++|+||+|+...++.....+....+.  .+..++++||||++|.+|   ||++++
T Consensus       172 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~l~GlRiG~~v~~  249 (384)
T PRK06348        172 NNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGM--PERTITFGSFSKDFAMTGWRIGYVIAP  249 (384)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCC--cCcEEEEecchhccCCccccceeeecC
Confidence            889999988   788999999999999999999876554311111121121  234688999999998666   999999


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecC
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEK  407 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~  407 (483)
                      +++++.++.......++.  +++...++..+++..++ .+++++.++++.+.+.+.|++++++.+..+..+.++++.++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~  327 (384)
T PRK06348        250 DYIIETAKIINEGICFSA--PTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKK  327 (384)
T ss_pred             HHHHHHHHHHHHhccCCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeccc
Confidence            999888765443334443  55555555555543221 134667778888889999988767666544445566777742


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ...    +   ..++++.++++.||.+.++......   .+..+|++++  .++++++++++.|+++
T Consensus       328 ~~~----~---~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~--~~~~~l~~al~~l~~~  382 (384)
T PRK06348        328 TGL----S---SVEFCEKLLKEAHVLVIPGKAFGES---GEGYIRLACT--VGIEVLEEAFNRIEKM  382 (384)
T ss_pred             CCC----C---HHHHHHHHHHhCCEEEcCchhhccC---CCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence            110    1   2356777777779999987543211   1245999985  5889999999988754

>PRK10534 L-threonine aldolase; Provisional

Probab=99.93  E-value=1.4e-24  Score=216.03  Aligned_cols=320  Identities=15%  Similarity=0.197  Sum_probs=212.5

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC  190 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~  190 (483)
                      .|||+|++.-+  .+|.+.+++.+.....        ..|+..+...+|++.|++++|.+..+++++|++++..++.+++
T Consensus         1 ~~~~~~~~~~~--p~~~~~~a~~~~~~~~--------~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~   70 (333)
T PRK10534          1 MIDLRSDTVTR--PSRAMLEAMMAAPVGD--------DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC   70 (333)
T ss_pred             CcccccccCCC--CCHHHHHHHHhccCCC--------cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc
Confidence            47899985445  5688888876644321        1465567889999999999999999999999999998888889


Q ss_pred             cCCcEEEEcCCchhHHHhH--hhhcC-CeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc
Q 011567          191 KKGDLIVADEGVHWGIQNG--LYLSR-STVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA  262 (483)
Q Consensus       191 ~~gdiI~~~~~~h~s~~~g--~~~s~-~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~  262 (483)
                      ++||.|+++.++|.....+  ....+ .+++.++.+     |+++|++.+.....    ....+++|+++.+.  +|.+.
T Consensus        71 ~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~----~~~~~~lv~l~np~--~G~v~  144 (333)
T PRK10534         71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDI----HFARTRLLSLENTH--NGKVL  144 (333)
T ss_pred             CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCc----CcccceEEEEecCC--CCeec
Confidence            9999988888877543332  23333 455555432     56777665532100    00025677776433  59998


Q ss_pred             Ch---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHHHhc
Q 011567          263 PL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQRLS  338 (483)
Q Consensus       263 ~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~~~~  338 (483)
                      |.   ++|.++|++|++++++||+|.++..+..+...   ..+. ...|.++.|+||++|. .|||+++++++++.++..
T Consensus       145 ~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~---~~~~-~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~  220 (333)
T PRK10534        145 PREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCEL---KEIT-QYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRW  220 (333)
T ss_pred             CHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCH---HHHH-hcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHH
Confidence            85   55678899999999999998754321111111   1111 1124445589999985 466899999998887654


Q ss_pred             CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          339 SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       339 ~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                      ...+.++.+.+..+++++.++++..   .+.+++..++++++.+.|+++ |+++..+ .+++++++++..         .
T Consensus       221 ~~~~~~~~~~~~~~~a~~~~~l~~~---~~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~~~~---------~  286 (333)
T PRK10534        221 RKMTGGGMRQAGILAAAGLYALKHN---VARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRVGEE---------Q  286 (333)
T ss_pred             HHHhCCchhhHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEEECCch---------h
Confidence            3222222223345555566666532   234555666778999999986 8877643 788888887420         1


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ..++.+ .|+++||++++..           .+|++.+..+|++++++++++|++++.
T Consensus       287 ~~~~~~-~l~~~gi~v~~~~-----------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        287 AAALGE-YMRERNVLINASP-----------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             HHHHHH-HHHHcCeeecCCc-----------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            234554 5666799997642           278888777899999999999987653

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.93  E-value=7.6e-24  Score=215.27  Aligned_cols=332  Identities=15%  Similarity=0.207  Sum_probs=224.8

Q ss_pred             eEEEeecCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecccHH
Q 011567          110 EVVNFASAN-YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYGLS  180 (483)
Q Consensus       110 ~~id~~s~~-~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG~~  180 (483)
                      .++||..+. .++  .++.+.+++.+.+...-.+       |+...-..+|++.+|+++    |.    ++.++.+++++
T Consensus        34 ~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  104 (391)
T PRK08361         34 NVISLGIGEPDFD--TPKNIKEAAKRALDEGWTH-------YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYE  104 (391)
T ss_pred             CeEEcCCCCCCCC--CCHHHHHHHHHHHhcCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHH
Confidence            578988874 333  3578888888877642111       211122345666666664    42    35566677788


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ++..++.+++++||.|+++.+.|..+...+...|.+++.++.+       |++++++.++.          .++++++..
T Consensus       105 al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----------~~~~v~i~~  174 (391)
T PRK08361        105 ATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK----------RTRMIVINY  174 (391)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc----------ccEEEEEeC
Confidence            9999999999999999999999999888888889988887652       56666665542          255666777


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      +++++|.+.|   +++|+++|++|++++|+||+|+.+.+..  .......... .+.+++++|+||++|..|   ||+++
T Consensus       175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~i~~~s~SK~~~~~GlRiG~~~~  251 (391)
T PRK08361        175 PNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEG--AKHYPMIKYA-PDNTILANSFSKTFAMTGWRLGFVIA  251 (391)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCC--CCCCCHhhcC-CCCEEEEecCchhcCCcHhhhhhhcc
Confidence            7889999999   8999999999999999999998765432  1111112222 234788999999999777   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++++++.+........+  +.+.+...++..+++.-..   ..+.++.++++.+.+.+.|++++++.+..+..+.++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~  329 (391)
T PRK08361        252 PEQVIKDMIKLHAYIIG--NVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFAN  329 (391)
T ss_pred             CHHHHHHHHHHHhhhcc--CCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEE
Confidence            99888876543221122  2345555555555532111   134567778888889999988777776655445567777


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++....    +   ..++++.+++++||.+.++......   .+..+||++.  .++++++++++.|++++++
T Consensus       330 l~~~~~----~---~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~--~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        330 IDETGM----S---SEDFAEWLLEKARVVVIPGTAFGKA---GEGYIRISYA--TSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CCCCCC----C---HHHHHHHHHHhCCEEEcCchhhCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence            742110    1   2256666666679999986543210   1245999987  4788999999999888754

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.93  E-value=1.1e-23  Score=213.16  Aligned_cols=321  Identities=18%  Similarity=0.211  Sum_probs=219.3

Q ss_pred             CChHHHHHHHHHHHhcCC--CCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHHHHHhhhhhhccCCcEEEE
Q 011567          124 GHEKLLESCTSALEKYGV--GSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVA  198 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~--g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~a~~~ai~~~~~~gdiI~~  198 (483)
                      .++.+.+++.+.+++++.  +....+...+..+...++++.+++++|.+   +.++.+++++++..++.++.++||.|++
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~   91 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVIT   91 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEE
Confidence            447889999999888642  11111111122367789999999999965   2345577889999999999899999999


Q ss_pred             cCCchhHHHhH----hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHH
Q 011567          199 DEGVHWGIQNG----LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIR  269 (483)
Q Consensus       199 ~~~~h~s~~~g----~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~  269 (483)
                      ....|.++...    .+..|.+++.++.+     |++++++.+++          ++++|++..+++++|.+.|+++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----------~~~~v~~~~~~n~tG~~~~~~~i~~  161 (376)
T TIGR01977        92 TPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT----------NTKLIVVSHASNVTGTILPIEEIGE  161 (376)
T ss_pred             CcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC----------CCeEEEEECCCCCccccCCHHHHHH
Confidence            99888876543    23347777776543     56777766632          2678888889999999999999999


Q ss_pred             HHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CC-c-eeeccHHHHHHHHhcCCce----
Q 011567          270 LKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EG-G-FCTGSARVVDHQRLSSSGY----  342 (483)
Q Consensus       270 l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~G-G-~i~~~~~~~~~~~~~~~~~----  342 (483)
                      +|++||+++|+|+++++|...         +++....+|++++|.+|++++ .| | +++.++..+..+.....++    
T Consensus       162 l~~~~~~~livD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~  232 (376)
T TIGR01977       162 LAQENGIFFILDAAQTAGVIP---------IDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSAL  232 (376)
T ss_pred             HHHHcCCEEEEEhhhccCccC---------CCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcccccc
Confidence            999999999999999987643         233334569999999999863 33 3 4444443222211110000    


Q ss_pred             ---------eec-CCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC----CCCCEEEEEec
Q 011567          343 ---------VFS-ASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN----PESPIVFLILE  406 (483)
Q Consensus       343 ---------~fs-~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~----~~~~i~~l~l~  406 (483)
                               .|. ++.+...+++..++++.+.+.  +.+.++.+++.+++++.|.+.+++.+..+    ...+++.+.+.
T Consensus       233 ~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~  312 (376)
T TIGR01977       233 IDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVE  312 (376)
T ss_pred             ccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEEC
Confidence                     011 234555566666788887654  46788899999999999988888887643    13567877774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc------ccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML------DKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~------~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ..      +   ..++.+.+.+++||.++.+.+...      +. ..+..||++++..+|++|+++++++|++
T Consensus       313 ~~------~---~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~-~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       313 GI------D---SEEVADILDEKFDIATRTGLHCAPLAHKTIGT-FATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CC------C---HHHHHHHHhccCCEEEEcccccchHHHHHhCC-CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            21      1   224566544434999986543211      00 0124599999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.93  E-value=2.4e-24  Score=219.58  Aligned_cols=324  Identities=13%  Similarity=0.106  Sum_probs=209.3

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCC--CCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH-h
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGS--CGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF-S  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~--~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~-~  184 (483)
                      .+++++.++ .|| .+|++.+++..+. ..-.+.  ..+....|..+...++++++++++|.+  +.+++++|+++.. .
T Consensus        21 ~~~~l~~g~-~~~-~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~   97 (398)
T cd00613          21 SMSFLGSGT-YKH-NPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAA   97 (398)
T ss_pred             Ccccccccc-cCC-cCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHH
Confidence            345665554 478 6777777766555 210111  111113456678899999999999976  6666666664444 4


Q ss_pred             hhhhhccC--CcEEEEcCCchhHHHhHhhhcC----CeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          185 AIPCFCKK--GDLIVADEGVHWGIQNGLYLSR----STVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       185 ai~~~~~~--gdiI~~~~~~h~s~~~g~~~s~----~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +..+...+  ||.|++++++|+++...+...+    .+++.++++     |++++++.+.   +       ++++|++++
T Consensus        98 ~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---~-------~t~~viv~~  167 (398)
T cd00613          98 GLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS---E-------EVAALMVQY  167 (398)
T ss_pred             HHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC---C-------CeEEEEEEC
Confidence            44444454  9999999999999988887776    788777764     4556665442   2       367788887


Q ss_pred             ccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc------CCCceee
Q 011567          254 VYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA------TEGGFCT  326 (483)
Q Consensus       254 v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg------~~GG~i~  326 (483)
                      +. ++|.+.| |++|+++|++||+++|+|++|+.|. +.   +-...     .++|++++|++|+++      +.+||++
T Consensus       168 ~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~-~~---~~~~~-----~~~d~~~~s~~K~~~p~g~Ggp~~g~l~  237 (398)
T cd00613         168 PN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT-GL---KPPGE-----YGADIVVGNLQKTGVPHGGGGPGAGFFA  237 (398)
T ss_pred             CC-CCceecchHHHHHHHHHhcCCEEEEEecccccc-CC---CChHH-----cCCCEEEeeccccCCCCCCCCCceeEEE
Confidence            65 6799988 5999999999999999999987543 11   11111     235999999999983      3357888


Q ss_pred             ccHHHHHHHHhc-----------------------------CCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHH
Q 011567          327 GSARVVDHQRLS-----------------------------SSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKK  375 (483)
Q Consensus       327 ~~~~~~~~~~~~-----------------------------~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~  375 (483)
                      .++++++.+...                             +..+++  +.++..++++..+++.+.+.  +++.++.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~--~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~  315 (398)
T cd00613         238 VKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNIC--TGQALLALMAAMYIVYLGPEGLKEIAERAHL  315 (398)
T ss_pred             EhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccce--ecHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            888877754211                             011112  22455555565566655432  357789999


Q ss_pred             HHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          376 NTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       376 ~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      +++++++.|+++.+.........+.+.+.+...      ......++++.+++ +||++.... +.     .+..||+++
T Consensus       316 ~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~L~~-~gi~~~~~~-~~-----~~~~lRis~  382 (398)
T cd00613         316 NANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPL------YGIRAEDLAKALID-GGFHAPTMY-LP-----VDGTLMIEP  382 (398)
T ss_pred             HHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCc------chHHHHHHHHhhhh-cCccccccc-cC-----CCCeEEEEc
Confidence            999999999887443321112233445554321      01234567776554 588875432 10     124599999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESL  471 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l  471 (483)
                      +..+|++|||+++++|
T Consensus       383 ~~~~t~edid~~~~~L  398 (398)
T cd00613         383 TETETKEELDALLEAL  398 (398)
T ss_pred             CCCCCHHHHHHHHHhC
Confidence            9999999999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK08912 hypothetical protein; Provisional

Probab=99.93  E-value=3.3e-23  Score=210.37  Aligned_cols=340  Identities=15%  Similarity=0.160  Sum_probs=224.7

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~  184 (483)
                      ..+||..+.+- ...++.+.+++.+.+...-.+.   ....|...+...+++.+.+.+|.    + +.++.+++++++..
T Consensus        27 ~~i~l~~g~p~-~~~p~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~  102 (387)
T PRK08912         27 GAINLGQGFPD-DPGPEDVRRAAADALLDGSNQY---PPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA  102 (387)
T ss_pred             CeEEccCCCCC-CCCCHHHHHHHHHHHhcCCCCC---CCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence            56899887542 2245778888777765421111   11223333334444444333342    2 44555777899988


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++.+++++||.|+++.++|..+...+...|.+++.++.+      |.+++++.+..          +++++++..++|++
T Consensus       103 ~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~l~~p~NPt  172 (387)
T PRK08912        103 ALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSP----------RTKAVLLNNPLNPA  172 (387)
T ss_pred             HHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCc----------cceEEEEeCCCCCc
Confidence            999999999999999999999988889889988776542      45666655432          24566666778999


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      |.+.+   +++|.++|++|++++|+||+|+...++.. ...+.+..+.  .+.+++++|+||.+|..|   ||+++++++
T Consensus       173 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~  250 (387)
T PRK08912        173 GKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM--RERTVKIGSAGKIFSLTGWKVGFVCAAPPL  250 (387)
T ss_pred             CcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc--cCceEEEeechhhccCcCceeEEEecCHHH
Confidence            99988   77799999999999999999987655421 1122222222  245799999999999777   999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      ++.+........++.  ++....++.+++....+ ..+.+++++++.+.+.+.|++. |+.+..+..+.++++.++....
T Consensus       251 ~~~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~~  327 (387)
T PRK08912        251 LRVLAKAHQFLTFTT--PPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLGL  327 (387)
T ss_pred             HHHHHHHHhhccccC--ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccCC
Confidence            988765543334443  33334444444421111 1346788888999999999886 7777655456677777753110


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .     ....++++.+++++||.+.++....... ..++.+|+++..  ++++++++++.|+++++
T Consensus       328 ~-----~~~~~~~~~l~~~~gV~v~pg~~f~~~~-~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        328 A-----EDDVAFCRRLVEEAGVAAIPVSAFYEED-PVTSVVRFCFAK--RDATLDEAVERLAAARR  385 (387)
T ss_pred             C-----CCHHHHHHHHHhcCCEEEecchhhCCCC-CCCCEEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence            0     0123567776777799998875432111 113459999885  58999999999988764

>PRK12414 putative aminotransferase; Provisional

Probab=99.93  E-value=2.8e-23  Score=210.53  Aligned_cols=337  Identities=16%  Similarity=0.203  Sum_probs=226.0

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~a~~  183 (483)
                      +.+|||..+.. .+..++.+.+++.+.++......+   ...|..++...+++.+++++|.     ++.+++++|++++.
T Consensus        29 ~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~  104 (384)
T PRK12414         29 HDALNLSQGAP-NFAPDPALVEGVARAMRDGHNQYA---PMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLY  104 (384)
T ss_pred             CCeEEcCCCCC-CCCCCHHHHHHHHHHHHhCCCCcC---CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHH
Confidence            45799998743 233468888888887764211111   1235567777888888888785     24667788889999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      .++++++.+||.|+++.+.|..+...++..|.+++.++.+      |++.|++.++.          ++++|++...+++
T Consensus       105 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~i~~p~NP  174 (384)
T PRK12414        105 AAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP----------RTRMIIVNTPHNP  174 (384)
T ss_pred             HHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCc----------ccEEEEEcCCCCC
Confidence            9999999999999999999988888888888888777643      45566555431          2567777778899


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      +|.+.+   +++|+++|++||+++|+||+|....+... ...+..+.+.  .+..|+++||||++|.+|   ||++++++
T Consensus       175 TG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~~~pGlRiG~~v~~~~  252 (384)
T PRK12414        175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL--AERSVIVSSFGKSYHVTGWRVGYCLAPAE  252 (384)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc--cCcEEEEecccccccCccceEEEEecCHH
Confidence            999876   78889999999999999999987655321 1122222222  223588999999998777   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      +++.++.......++.  +.....++.+.++.-....+..+.++++.+.+.+.|++. |+.+..+..+.++++.+.....
T Consensus       253 l~~~l~~~~~~~~~~~--s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~  329 (384)
T PRK12414        253 LMDEIRKVHQFMVFSA--DTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD  329 (384)
T ss_pred             HHHHHHHHHhheecCC--CcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC
Confidence            9888765432223333  333344444444311111235677888899999999886 7776655455566666642110


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .  .    ..+++.+++++.||.+.++...... ....+.+||+++.  ++++++++++.|.+
T Consensus       330 ~--~----~~~~~~~~l~~~gV~v~pg~~f~~~-~~~~~~iRis~~~--~~~~~~~~~~rl~~  383 (384)
T PRK12414        330 E--S----DSDFVLRLIRDARVATIPLSAFYTD-GTDTGLIRLSFSK--DDATLVEGARRLCS  383 (384)
T ss_pred             C--C----HHHHHHHHHHhCCEEEecchhhcCC-CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            0  0    1245555677789999987533211 0012459999984  68999999988864

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=2.1e-23  Score=210.12  Aligned_cols=326  Identities=14%  Similarity=0.161  Sum_probs=223.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEecccH-HHHHhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYGL-STMFSAIP  187 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG~-~a~~~ai~  187 (483)
                      .+++|..+.. ++..+|.+.+++.+.+... .       .|+... ..+|++.||++++.+ +.|++++|+ +++..++.
T Consensus        33 ~~~~l~~~~~-~~~~~~~~~~a~~~~~~~~-~-------~Y~~~~-~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~  102 (369)
T PRK08153         33 FRARIGANES-GFGPSPSVIAAMREAAAEI-W-------KYGDPE-NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVR  102 (369)
T ss_pred             ceeEecCCCC-CCCCCHHHHHHHHHHHHHh-h-------cCCCCc-cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence            4579988733 4556789999988876541 1       122222 578999999999864 566666665 66777788


Q ss_pred             hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      +++++||.|+++.++|......+...|.+++.++. +|..+++++++.....      .+++|++...++++|.+.|.++
T Consensus       103 ~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~------~~~~i~l~~P~NPtG~~~~~~~  176 (369)
T PRK08153        103 LYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAARRE------NAPLVYLANPDNPMGSWHPAAD  176 (369)
T ss_pred             HhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhccc------CCcEEEEeCCCCCCCCCCCHHH
Confidence            88999999999999998888777778888887774 4555566655543221      2456666666888999999877


Q ss_pred             HHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCc
Q 011567          267 LIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       267 l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~  341 (483)
                      +.++++.+  +++||+||+|+....+  |.  ...+... .+..++++||||++|.+|   ||+++++++++.+......
T Consensus       177 l~~l~~~~~~~~~lI~DE~y~~~~~~--~~--~~~~~~~-~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~  251 (369)
T PRK08153        177 IVAFIEALPETTLLVLDEAYCETAPA--GA--APPIDTD-DPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH  251 (369)
T ss_pred             HHHHHHhCCCCcEEEEeCchhhhcCc--cc--chhhhhc-CCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC
Confidence            77777654  8999999999754322  21  1111111 223688999999999778   9999999998887654332


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                        +  +.++...+++.++++.-+...+..+.++++.+.+.+.|++. |+.+. +..++++++.+...       .....+
T Consensus       252 --~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~-------~~~a~~  318 (369)
T PRK08153        252 --F--GMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD-------GAFARA  318 (369)
T ss_pred             --C--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC-------cccHHH
Confidence              2  35677777777777521111345666777888888888775 76544 45677777766321       122446


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +.+++++ +||.++....+.     .+..+|+++.   +++|+++++++|++++...
T Consensus       319 l~~~l~~-~Gi~v~~p~~~~-----~~~~iRis~~---~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        319 VLDGLIA-RDIFVRMPGVAP-----LDRCIRVSCG---PDEELDLFAEALPEALEAA  366 (369)
T ss_pred             HHHHHHH-CCeEEeeCCCCC-----CCCeEEEecC---CHHHHHHHHHHHHHHHHHh
Confidence            7776655 599995322111     1245999985   7999999999999988754

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=2.6e-23  Score=209.60  Aligned_cols=321  Identities=17%  Similarity=0.154  Sum_probs=222.8

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEe-cccHH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILY-SYGLS  180 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~-~sG~~  180 (483)
                      ..+|+..+ +.++  .+|.+.+++.+.++.......    .|.. .-..+|++.+|+++    |.   ++.|+. +++.+
T Consensus        27 ~~i~l~~~~~~~~--~~~~~~~al~~~l~~~~~~~~----~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~   99 (368)
T PRK03317         27 VPVRLNTNENPYP--PSPALVADIAEAVAEAAAGLN----RYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNE   99 (368)
T ss_pred             ceeEecCCCCCCC--CCHHHHHHHHHHHhhhhhhhc----cCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHH
Confidence            46888887 4543  568899999988764211111    1221 12466778888877    32   234555 55568


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ++..++++++++||.|++..+++..+...++..|.+++.++.+     |++++++.+++.         +.++|++..++
T Consensus       100 ~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~---------~~~~i~l~~p~  170 (368)
T PRK03317        100 ILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEH---------RPDVVFLTSPN  170 (368)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhcc---------CCCEEEEeCCC
Confidence            8899999999999999999999988888888888887776532     567777766532         13456666788


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      +++|.+.+.+++.++|+.+++++|+||+|+....  .|. ...+..+..+  ..++++||||++|..|   ||+++++++
T Consensus       171 NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~--~~~~~~~~~~~~~~--~~i~~~SfSK~~g~~GlRiG~~~~~~~~  246 (368)
T PRK03317        171 NPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRR--SGTPSALTLLPEYP--RLVVSRTMSKAFAFAGGRLGYLAAAPAV  246 (368)
T ss_pred             CCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcc--cCCcCHHHHHHhCC--CEEEEEechhhhccchhhhhhhhCCHHH
Confidence            9999999999999999999999999999986432  232 2223322222  3578899999999778   999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE-EecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL-ILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l-~l~~~~~  410 (483)
                      ++.++.....  |  ..+++.++++.++++..+...+.+++++++.+.+.+.|++. |+.+..+ .++++.+ .+.    
T Consensus       247 ~~~l~~~~~~--~--~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~----  316 (368)
T PRK03317        247 VDALRLVRLP--Y--HLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVAPS-DANFVLFGRFA----  316 (368)
T ss_pred             HHHHHhcCCC--C--CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeCCC-CCcEEEEeccC----
Confidence            9988755432  2  34677777777777654333345566778888888888875 7776543 4555433 221    


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                          +   ..++.+.++ ++||++.+...        ++.+||+++   ++++++++++++++++..-+
T Consensus       317 ----~---~~~~~~~l~-~~Gv~v~~~~~--------~~~iRi~~~---~~~~~~~~~~~l~~~~~~~~  366 (368)
T PRK03317        317 ----D---RHAVWQGLL-DRGVLIRDVGI--------PGWLRVTIG---TPEENDAFLAALAEVLATEL  366 (368)
T ss_pred             ----C---HHHHHHHHH-HCCEEEEeCCC--------CCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence                1   235666555 46999986422        245999974   78999999999999876543

>PRK08068 transaminase; Reviewed

Probab=99.93  E-value=3e-23  Score=210.76  Aligned_cols=331  Identities=17%  Similarity=0.187  Sum_probs=219.4

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----C-CEEEeccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e-~~i~~~sG  178 (483)
                      |+.++||..+++- +..+|.+.+++.+.++.....      .|+...-..+|++++|+++    |.    + +.+++++|
T Consensus        31 ~~~~i~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~  103 (389)
T PRK08068         31 GHDVINLGQGNPD-QPTPEHIVEALQEAAENPANH------KYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGG  103 (389)
T ss_pred             CCCeEEecCCCCC-CCCCHHHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            4568999998664 335678889888887642111      1221122355666666665    52    2 34455666


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++..++.+++++||.|+++.++|..+...+...|.+++.++.+       |++++++.+.   .       .+++|++
T Consensus       104 ~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~-------~~~~v~l  173 (389)
T PRK08068        104 KAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA---E-------KAKLMYL  173 (389)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc---c-------cceEEEE
Confidence            788888899999999999999999999888889999998888753       3344444332   2       2456666


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-CccccccCCCCCceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-RGLTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      ..++|++|.+.+   +++|+++|++||+++|+||+|+...+.... ..+....+.  .+..++++||||+||.+|   ||
T Consensus       174 ~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~g~~GlRiG~  251 (389)
T PRK08068        174 NYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGA--KDVGIELYTLSKTFNMAGWRVAF  251 (389)
T ss_pred             ECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCc--cCCEEEEecchhccCCccceeEe
Confidence            656789999999   578888999999999999999754332100 011122222  234688899999999888   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      +++++++++.+......+.  .+.++....++.+++..- ...+..++.++++.+.+.+.|+++ |+.+..+..+.++++
T Consensus       252 ~~~~~~l~~~l~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~~~g~~~~~v  328 (389)
T PRK08068        252 AVGNESVIEAINLLQDHLF--VSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI-GWEVDAPKGSFFAWM  328 (389)
T ss_pred             EecCHHHHHHHHHHHhhcc--CCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEE
Confidence            9999999988765543332  233343444444444211 111346778888888999999886 777664445556778


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .+++..        ...++++.++++.||.+.++......   .+..+||++.  .+++.++++++.|++
T Consensus       329 ~~~~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        329 PVPKGY--------TSEQFADLLLEKAHVAVAPGNGFGEH---GEGYVRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             ECCCCC--------CHHHHHHHHHHhCCEEEecchHhCcc---CCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            774321        12357777776679999886533211   1245999996  467778877777765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.93  E-value=2.3e-23  Score=210.96  Aligned_cols=332  Identities=17%  Similarity=0.160  Sum_probs=221.1

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI  186 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai  186 (483)
                      |+|.++.   +. .++.+.+++.+.+..+ .+..+....++  ..+...++++.+++++|.+  +.++.++|++++..++
T Consensus         2 yld~aa~---~~-~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al   76 (379)
T TIGR03402         2 YLDNNAT---TR-VDPEVLEAMLPYFTEY-FGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAI   76 (379)
T ss_pred             cCCCcCC---CC-CCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHH
Confidence            4555554   22 4578899988887653 12211111111  1346778899999999965  3455578889998888


Q ss_pred             hhhc---cCCcEEEEcCCchhHHHhH---hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          187 PCFC---KKGDLIVADEGVHWGIQNG---LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       187 ~~~~---~~gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      .++.   .++|.|++....|.+....   +...|.+++.++.+     |++++++.+++          .++++++..++
T Consensus        77 ~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~----------~~~lv~i~~~~  146 (379)
T TIGR03402        77 KSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD----------DTALVSVMWAN  146 (379)
T ss_pred             HHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC----------CcEEEEEEccc
Confidence            7653   4568898888888776433   33357777777542     56777766632          26788888999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDH  334 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~  334 (483)
                      +++|.+.|+++|.++|++||+++++|++|++|...         .++....+|+++.|.+|.+|+.| |++..++...  
T Consensus       147 n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~--  215 (379)
T TIGR03402       147 NETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIP---------IDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTR--  215 (379)
T ss_pred             CCeeecccHHHHHHHHHHcCCEEEEECcccccccc---------cCcccCCCCEEEEcHHHcCCCCceEEEEECCCCC--
Confidence            99999999999999999999999999999875432         23333456999999999767665 7765554431  


Q ss_pred             HHhcCC-ce----eecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhcc-CCCceeecCCC---CCEEEEE
Q 011567          335 QRLSSS-GY----VFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSD-IHGLSIASNPE---SPIVFLI  404 (483)
Q Consensus       335 ~~~~~~-~~----~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~---~~i~~l~  404 (483)
                      ++.... ++    ...++.+.....+..++++.+.+. ++..++.+++.+++++.|.+ ++++.+.++..   +.++.+.
T Consensus       216 ~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  295 (379)
T TIGR03402       216 FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNIS  295 (379)
T ss_pred             CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEE
Confidence            111000 00    112344555556666777776543 34567888888999999985 77887765422   2367676


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC--------------CCCCceEEEccCCCCHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC--------------RLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~--------------~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      +....         ..++.. .|+++||.++.+..+.....              ..++.+|++++..+|++|||++++.
T Consensus       296 ~~~~~---------~~~~~~-~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~  365 (379)
T TIGR03402       296 FEYIE---------GEAILL-LLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEV  365 (379)
T ss_pred             ecCCC---------HHHHHH-hhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHH
Confidence            64321         124565 45667999986543221110              0124599999999999999999999


Q ss_pred             HHHHHHHH
Q 011567          471 LKRISAVV  478 (483)
Q Consensus       471 l~~~~~~~  478 (483)
                      |+++++++
T Consensus       366 l~~~~~~~  373 (379)
T TIGR03402       366 LPPIIARL  373 (379)
T ss_pred             HHHHHHHH
Confidence            99988764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=2.3e-23  Score=213.57  Aligned_cols=343  Identities=15%  Similarity=0.105  Sum_probs=229.2

Q ss_pred             CeeEEEeecCCC--C-CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------CCEEEec
Q 011567          108 GKEVVNFASANY--L-GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------PDSILYS  176 (483)
Q Consensus       108 G~~~id~~s~~~--l-G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------e~~i~~~  176 (483)
                      |+++|++..+++  + .+...+.+.+++.+.++.....      .|+...-..++++.++++++.        ++.++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~  124 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYN------SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTA  124 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCC------CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeC
Confidence            788999999854  2 3556788999999888752211      122222235677777777632        4566667


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++++++..++.++.++||.|++..+.|..+.......+.+++.++.       -|++++++.+..          +++++
T Consensus       125 G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~i  194 (430)
T PLN00145        125 GCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE----------NTVAM  194 (430)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc----------CceEE
Confidence            7789999999999999999999999998877777888888877653       166777665533          24555


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..+.|++|.+.|   +++|+++|++||+++|+||+|....++.  ........+.....-|+++||||.++.+|   |
T Consensus       195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG  272 (430)
T PLN00145        195 VIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS--KPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLG  272 (430)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC--CCccchhhhcccCcEEEEeccccccCCCCeeEE
Confidence            55556789999998   8899999999999999999998765542  11111111121233688999999998777   9


Q ss_pred             eeec--cHHHHH------HHHhcCCceeecCCCcHHHHHHHHHHHHHH-h-cCcHHHHHHHHHHHHHHHhhccCCCceee
Q 011567          324 FCTG--SARVVD------HQRLSSSGYVFSASLPPYLASAAITAIDVL-E-ENPDLITKLKKNTAILRTGLSDIHGLSIA  393 (483)
Q Consensus       324 ~i~~--~~~~~~------~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~  393 (483)
                      |+++  ++.+++      .++...  .. +.+.+.+...++..+++.- + ...+.++.++++.+.+.+.|++++++.+.
T Consensus       273 ~iv~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~  349 (430)
T PLN00145        273 WIATCDPNGILKETKVVDSIRNYL--NI-STDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCP  349 (430)
T ss_pred             EEEEecchhhhhhhHHHHHHHHHh--cc-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            9886  333332      232221  11 1123445555555555421 1 11346778888899999999887777643


Q ss_pred             -cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          394 -SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       394 -~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                       .+..+.++++.++.....   +.....+++.++++++||.+.++.....     ++.+||++.  .++++++++++.|+
T Consensus       350 ~~P~ga~y~~v~l~~~~~~---~~~~~~~~~~~ll~~~gV~v~pG~~fg~-----~~~lRis~~--~~~~~l~~al~rl~  419 (430)
T PLN00145        350 HKPEGSMFVMVKLDLSCLS---GIKDDMDFCCKLAKEESVVVLPGSALGM-----KNWLRITFA--IDPPSLEDGLERLK  419 (430)
T ss_pred             cCCCeeeEEEeccChhhcC---CCCCHHHHHHHHHHhCCEEEeCccccCC-----CCeEEEEeC--CCHHHHHHHHHHHH
Confidence             345677777776421000   0001235676777778999998765432     355999987  47899999999999


Q ss_pred             HHHHHHHhc
Q 011567          473 RISAVVLRD  481 (483)
Q Consensus       473 ~~~~~~~~~  481 (483)
                      +++.+.-++
T Consensus       420 ~~~~~~~~~  428 (430)
T PLN00145        420 SFCLRHAKL  428 (430)
T ss_pred             HHHHHhccc
Confidence            998776544

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.93  E-value=7e-23  Score=207.67  Aligned_cols=331  Identities=16%  Similarity=0.200  Sum_probs=219.3

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEe-ccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILY-SYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~-~sG  178 (483)
                      |++++||..++. ++...+.+.+++.+.+......      .|+...-..+|++.+++++    |.    ++.+++ +++
T Consensus        28 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~  100 (383)
T TIGR03540        28 GVDVISLGIGDP-DLPTPKHIVEALCKAAENPENH------RYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGS  100 (383)
T ss_pred             CCCeEEeCCCCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCc
Confidence            567899998854 3434678888888877542111      1221112345556666554    43    234555 555


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++..++.+++++||.|+++.+.+..........|.+++.++.+       |++++++.+.   .       ++++|++
T Consensus       101 ~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~---~-------~~~~v~i  170 (383)
T TIGR03540       101 KEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA---K-------KAKLMFI  170 (383)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc---c-------cceEEEE
Confidence            688889999999999999999999988888888889988877643       3445544442   1       2566666


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      .+++|++|.+.+   +++|+++|++||+++|+||+|+...+..  ........+.. .+..++++||||++|..|   ||
T Consensus       171 ~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~  248 (383)
T TIGR03540       171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG--YKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGM  248 (383)
T ss_pred             eCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC--CCCcCcccCCCcccCEEEEEecccccCCccceeeE
Confidence            666899999999   7999999999999999999998655432  11111111211 234688899999998777   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      +++++++++.+......+..  +.+.....++.++++...+ ..+.++.++++.+.+.+.|++. |+.+..+..+.++++
T Consensus       249 ~i~~~~l~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~  325 (383)
T TIGR03540       249 AVGNADLIAGLGKVKTNVDS--GVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWV  325 (383)
T ss_pred             EeCCHHHHHHHHHHHHhccc--CCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEE
Confidence            99999998877543322211  2233344444455532211 1345777888899999999886 887765545666778


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .+++..        ...+++..+++++||.+.++......   .++.+||++.  .++++++++++.|++
T Consensus       326 ~l~~~~--------~~~~~~~~ll~~~gi~v~~g~~f~~~---~~~~~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       326 PVPEGY--------TSAEFAARLLEETGVVVTPGVGFGEY---GEGYIRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             ECCCCC--------CHHHHHHHHHHHCCEEEecchhhCcc---CCCeEEEEec--CCHHHHHHHHHHHhh
Confidence            774321        12357777777779999987543211   1234999986  568888888887754

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK07777 aminotransferase; Validated

Probab=99.93  E-value=5.2e-23  Score=208.90  Aligned_cols=339  Identities=15%  Similarity=0.142  Sum_probs=220.6

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-----CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-----DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-----~~i~~~sG~~a~~~  184 (483)
                      +++||..+.. ....++.+.+++.+.+... ...  .....|..++...+++.+.+.+|.+     +.+++++|++++..
T Consensus        25 ~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~~--Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~  100 (387)
T PRK07777         25 GAVNLGQGFP-DEDGPPEMLEAAQEAIAGG-VNQ--YPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAA  100 (387)
T ss_pred             CeEEccCCCC-CCCCCHHHHHHHHHHHhcC-CCC--CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence            5689888753 2223466777777777642 111  1111233334444444444445642     35666777899999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      ++.+++++||.|++..+.|..+...+...|.+++.++.+        |++++++.+.+          ++++|+++++++
T Consensus       101 ~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~l~~p~N  170 (387)
T PRK07777        101 AVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP----------RTRALIVNSPHN  170 (387)
T ss_pred             HHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc----------ccEEEEEcCCCC
Confidence            999999999999999999988888888888887766532        45666655432          256777778889


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC-CCCccccccCCCCCceeEEEccccccccCCC---ceeeccH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSA  329 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~  329 (483)
                      ++|...+   +++|+++|++|++++|+||+|+...+.. ....+.+..+.  .+.+++++|+||+||.+|   ||+++++
T Consensus       171 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~GlRiG~~~~~~  248 (387)
T PRK07777        171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGM--RERTVTISSAAKTFNVTGWKIGWACGPA  248 (387)
T ss_pred             CCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCC--cCcEEEEeechhhccCcCceeEEEecCH
Confidence            9999876   8899999999999999999998765532 11122221111  345899999999999777   9999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      ++++.+........++.+ ++... ++..++...+ ...++++.++++.+.+.+.|++. ++.+..+..+.++++.++..
T Consensus       249 ~l~~~~~~~~~~~~~~~~-~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~  325 (387)
T PRK07777        249 PLIAAVRAAKQYLTYVGG-APFQP-AVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPL  325 (387)
T ss_pred             HHHHHHHHHHhhcccCCC-CHHHH-HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEeccccc
Confidence            988877654332333332 23332 2233332111 11346778889999999999886 77766554555666665321


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .. .     ...++++.+++++||.+.++..........+..+||++..  ++++++++++.|+++.
T Consensus       326 ~~-~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        326 GY-D-----DGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK--RDDTLDEAIRRLRALR  384 (387)
T ss_pred             CC-C-----CHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            10 0     1246788777777999998753221111112459999864  7999999999998764

>PRK09148 aminotransferase; Validated

Probab=99.93  E-value=8.5e-23  Score=208.28  Aligned_cols=343  Identities=12%  Similarity=0.134  Sum_probs=225.5

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----C-CEEEecc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSY  177 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e-~~i~~~s  177 (483)
                      .|+.++||..++. .+...+.+.+++.+.++.-..  .    .|+...-..+|++.+|+++    |.    + +.++.++
T Consensus        28 ~~~~~i~l~~~~p-~~~~~~~~~~~~~~~~~~~~~--~----~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G  100 (405)
T PRK09148         28 AGADIIDLGMGNP-DLPTPQHIVDKLCETAQDPRT--H----RYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLG  100 (405)
T ss_pred             cCCCeEEcCCCCC-CCCCCHHHHHHHHHHHcCccc--C----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC
Confidence            3667899988744 233357788887776643111  1    1221122345555555554    53    3 3444456


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +++++..++.+++++||.|+++.++|..+...+...|.+++.++..    +.+++++.++....       +++++++..
T Consensus       101 ~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~-------~~~~v~l~~  173 (405)
T PRK09148        101 SKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIP-------KPIALIVNY  173 (405)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccc-------cceEEEEeC
Confidence            6788999999999999999999999988887888889888877642    34566666654322       256777777


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceee
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      ++|++|.+.+   +++|.++|++||+++|+||+|+...++.  ........++ ..+..++++||||++|.+|   ||++
T Consensus       174 P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~--~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v  251 (405)
T PRK09148        174 PSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG--NPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV  251 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCC--CCCCChhhCCCccCcEEEEeccccccCCcchheeeee
Confidence            7889999999   5789999999999999999998755432  1111111121 1234577899999999777   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      +++++++.+........++.  ++....++.+.++..+. ..+.++.++++.+.+.+.|++. ++.+..+..+.++++.+
T Consensus       252 ~~~~~i~~l~~~~~~~~~~~--~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l  328 (405)
T PRK09148        252 GNERLIAALTRVKSYLDYGA--FTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPI  328 (405)
T ss_pred             CCHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEEC
Confidence            99999988765432222222  34444444455532111 1345677788888899999875 77655455667788877


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +......     ...+++..++++.||.+.++......   .+..+||++.  .++++++++++.|.+++.+.
T Consensus       329 ~~~~~~~-----~~~~~~~~ll~~~gV~v~pg~~f~~~---~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~  391 (405)
T PRK09148        329 PEAFRHL-----GSLEFSKLLVEKADVAVAPGVGFGEH---GDGYVRIALV--ENEQRIRQAARNIKRFLSSA  391 (405)
T ss_pred             CCccCCC-----CHHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence            5321100     12356676776679999987543211   1245999886  57899999999999888653

>PRK08960 hypothetical protein; Provisional

Probab=99.93  E-value=4.5e-23  Score=209.27  Aligned_cols=332  Identities=14%  Similarity=0.087  Sum_probs=219.7

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEEecccH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYGL  179 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~sG~  179 (483)
                      |+++++|..+.. ++...+.+.+++.+.+.....+       |+...-..++++.+|+++    |    .++.+++++++
T Consensus        31 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~  102 (387)
T PRK08960         31 GHDVIHLEIGEP-DFTTAEPIVAAGQAALAAGHTR-------YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGS  102 (387)
T ss_pred             CCCeEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCc-------cCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcH
Confidence            456788888744 3434688999998888742121       211122345666666665    3    23455557778


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++..++.++.++||.|+++.+.|......+...|.+++.++..       |++++++.+++          .++++++.
T Consensus       103 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----------~~~~i~i~  172 (387)
T PRK08960        103 GALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA----------DTVGALVA  172 (387)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc----------cceEEEEE
Confidence            99999999999999999999999998888888888887766532       45566555432          24455556


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      .++|++|...+   +++|+++|++||+++|+||+|....++..   ......+.+  ..++++|+||.+|..|   ||++
T Consensus       173 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~---~~~~~~~~~--~vi~~~S~SK~~g~~GlRiG~~~  247 (387)
T PRK08960        173 SPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASVLEVDD--DAFVLNSFSKYFGMTGWRLGWLV  247 (387)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCChhhccC--CEEEEeecccccCCcccEEEEEE
Confidence            66889999998   56788889999999999999976544321   112233322  3578899999998666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-H-hcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEE
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-L-EENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFL  403 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l  403 (483)
                      +++++++.++.....+..+  .+.+...++.++++. . ....+.++.++++.+.+.+.|++. ++.+. .+..+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~--~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~  324 (387)
T PRK08960        248 APPAAVPELEKLAQNLYIS--ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYA  324 (387)
T ss_pred             cCHHHHHHHHHHHhhhccC--CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEE
Confidence            9999988776543333332  244554545555531 1 111245667778888888888875 65542 2345667777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+++...    +   ..+++..+++++||.+.++.......  ....+|+++..  +.++++++++.|+++++
T Consensus       325 ~~~~~~~----~---~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        325 DISAFGG----D---AFAFCRHFLETEHVAFTPGLDFGRHQ--AGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             eccccCC----C---HHHHHHHHHHhCCEEEcCchHhCCCC--CCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            7643100    1   23567777777799999875443211  12359999985  67888888888887654

>PRK07683 aminotransferase A; Validated

Probab=99.93  E-value=5.9e-23  Score=208.32  Aligned_cols=334  Identities=15%  Similarity=0.138  Sum_probs=224.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----C-CEEEecccH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSYGL  179 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e-~~i~~~sG~  179 (483)
                      +.++||..++. .+...+.+.+++.+.+.....+       |+......+|++.+++++    |.    + +.++.++++
T Consensus        28 ~~~i~l~~~~p-~~~~~~~~~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~   99 (387)
T PRK07683         28 DNLISLTIGQP-DFPTPSHVKEAAKRAITENYTS-------YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGAS   99 (387)
T ss_pred             CCeEEecCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence            46789888753 2334578889998888753221       222222355666666665    42    2 445556668


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +|+..++.++.++||.|+++.+.+..+...+...|.+++.++.+      |.+++++.+..          ++++|++..
T Consensus       100 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~i~i~~  169 (387)
T PRK07683        100 EAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITE----------KTRCVVLPY  169 (387)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCc----------CceEEEEeC
Confidence            99999999999999999999998888887888889988887643      34556555432          256777788


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      +++++|...+   +++|+++|+++|+++|+||+|+...++.....+.++.+.  .+..++++|+||++|.+|   ||+++
T Consensus       170 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~pGlRiG~i~~  247 (387)
T PRK07683        170 PSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM--REKTIVINGLSKSHSMTGWRIGFLFA  247 (387)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCC--cCCeEEEeeccccccCccceeEEEEc
Confidence            8889999887   789999999999999999999876654332233332222  223688899999999778   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.+.... .+.+.+ .+.+...++.+.++.-. ...+.++.++++.+.+.+.|.+. ++.+..+..+.++++.+.
T Consensus       248 ~~~l~~~~~~~~-~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  324 (387)
T PRK07683        248 PSYLAKHILKVH-QYNVTC-ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIG  324 (387)
T ss_pred             CHHHHHHHHHHH-HhccCC-CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEecc
Confidence            999888876432 233222 23444444544553211 11245667788888999999875 776654434445555553


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ....    +   ..+++..+++++||.+.++......   .+..+||++..  +++++++++++|.+++.+
T Consensus       325 ~~~~----~---~~~~~~~ll~~~gI~v~pg~~f~~~---~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        325 HFTM----S---SFDFALDLVEEAGLAVVPGSAFSEY---GEGYVRLSYAY--SIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             cCCC----C---HHHHHHHHHHhCCEEEcCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            2110    1   2245666677789999887543210   12459999874  799999999999988754

>PRK08175 aminotransferase; Validated

Probab=99.93  E-value=1.1e-22  Score=207.04  Aligned_cols=341  Identities=15%  Similarity=0.158  Sum_probs=225.8

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEeccc-
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYG-  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG-  178 (483)
                      |++++||..++..+. ..+.+.+++.+.+......      .|+...-..+|++.+++++    |.    ++.+++++| 
T Consensus        28 ~~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~  100 (395)
T PRK08175         28 GEDIIDFSMGNPDGP-TPPHIVEKLCEVAQRPDTH------GYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGS  100 (395)
T ss_pred             CCCeEEcCCCCCCCC-CCHHHHHHHHHHHhCCCcC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence            567899998876554 4566888877766431111      1222222345555555553    42    224555555 


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      .+++..++.+++++||.|+++++.|......+...|.+++.++.+    +.+++++.++....       ++++|++..+
T Consensus       101 ~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~-------~~~~v~i~~p  173 (395)
T PRK08175        101 KEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYP-------KPKMMILGFP  173 (395)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCCcHHHHHHHHhhccC-------CceEEEEeCC
Confidence            477888888999999999999999988777778888888777643    36677776654322       2567777777


Q ss_pred             cCCCCCccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ceeec
Q 011567          255 YQNSGQIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       255 ~~~~G~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      ++++|.+.+.   ++|+++|++||+++|+||+|+...++  +........++. .+..++++|+||.||.+|   ||+++
T Consensus       174 ~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~  251 (395)
T PRK08175        174 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYD--GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG  251 (395)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccC--CCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence            8899999985   89999999999999999999865543  221111122211 234577899999998666   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.+........++.  ++....++.++++..+. ..++++.++++.+++.+.|++. ++.+..+..++++++.++
T Consensus       252 ~~~l~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~  328 (395)
T PRK08175        252 NPELVSALARIKSYHDYGT--FTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIP  328 (395)
T ss_pred             CHHHHHHHHHHHhhcccCC--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECC
Confidence            9999988764332223332  23334444444532111 1345677778888899999886 777665557888898886


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.....     ...+++.+++++.||.+.++......   .+..+||++.  .+++.++++++.|++++++
T Consensus       329 ~~~~~~-----~~~~~~~~l~~~~gv~v~p~~~f~~~---~~~~lRis~~--~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        329 EPYAAM-----GSLEFAKKLLNEAKVCVSPGIGFGDY---GDTHVRFALI--ENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             cccCCC-----CHHHHHHHHHHhCCEEEeCchhhCcC---CCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence            421100     12467776776779999886432210   1245999885  5789999999999988865

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.93  E-value=1.2e-22  Score=206.18  Aligned_cols=331  Identities=17%  Similarity=0.236  Sum_probs=218.2

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEe-ccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILY-SYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~-~sG  178 (483)
                      |.+++||..++. .+...+.+.+++.+.+......      .|+...-..+|++.+++++    |.    ++.+++ +++
T Consensus        30 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~  102 (385)
T PRK09276         30 GVDVISLGIGDP-DLPTPDHIIEAMCKAVEDPENH------QYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGS  102 (385)
T ss_pred             CCCEEEecCCCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence            456899998854 2334678888888887642211      1211111345556666655    42    233555 555


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ++++..++.+++++||.|+++.+++..+....+..|.+++.++..       |++++++.+.   .       ++++|++
T Consensus       103 ~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~---~-------~~~~v~l  172 (385)
T PRK09276        103 KEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA---K-------KAKLMFI  172 (385)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc---c-------cceEEEE
Confidence            688889999999999999999999988888888889988877642       3344443332   1       2566777


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      .+.+|++|.+.+   +++|+++|++||+++|+||+|..+.++  +........++. .+..|+++||||.+|..|   ||
T Consensus       173 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  250 (385)
T PRK09276        173 NYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYD--GYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGF  250 (385)
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecC--CCCCCChhccCCCcCCEEEEecchhhcCCcchhhee
Confidence            777899999998   688999999999999999999866543  221211122221 234688899999999877   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      +++++++++.++.......  .+.++....++.++++..+. .++.++.++++.+.+.+.|++. ++.+..+..+.++++
T Consensus       251 ~i~~~~l~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v  327 (385)
T PRK09276        251 AVGNADLIAGLGKVKSNVD--SGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLEVEPPKATFYVWA  327 (385)
T ss_pred             eeCCHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEE
Confidence            9999999888765432221  12244444445555532111 1345677788888999999886 777665545556777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .++...        ...+++..+++++||.+.++......   .+..+||++.  .++++++++++.|.+
T Consensus       328 ~~~~~~--------~~~~l~~~ll~~~gi~v~~g~~f~~~---~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        328 PVPKGY--------TSAEFATLLLDKAGVVVTPGNGFGEY---GEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             ECCCCC--------CHHHHHHHHHHhCCEEECCchhhCCC---CCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            774321        12356777776679999887543210   1245999986  478888888887754

>TIGR01814 kynureninase kynureninase

Probab=99.93  E-value=4.6e-23  Score=210.45  Aligned_cols=325  Identities=15%  Similarity=0.113  Sum_probs=215.2

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCc--ccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF--YGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI  186 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~--~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai  186 (483)
                      ++.|.++. .|. .++.+.+++.+.++.++.++.++...  .+......++++ + +++|.+  +.++.+++++++..++
T Consensus        28 ~iyld~~a-~g~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~  103 (406)
T TIGR01814        28 VIYLDGNS-LGL-MPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL  103 (406)
T ss_pred             cEEecCCC-cCc-CcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence            34444333 565 47888999998888876543322211  122344455544 5 888864  4555577778888888


Q ss_pred             hhhccCC---cEEEEcCCchhHHHhH----hhhcCCeE----EEecC-C----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          187 PCFCKKG---DLIVADEGVHWGIQNG----LYLSRSTV----VYFKH-N----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       187 ~~~~~~g---diI~~~~~~h~s~~~g----~~~s~~~v----~~~~~-~----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .++.+++   +.|+++...|.+....    ++..|.++    +.++. +    |++++++.++...+       ++++|+
T Consensus       104 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-------~t~lv~  176 (406)
T TIGR01814       104 ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGD-------DIAVIL  176 (406)
T ss_pred             HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCC-------CeEEEE
Confidence            8765443   4788888888875443    34456665    33332 2    67788887765433       378999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~  329 (483)
                      ++++++.+|.+.|+++|.++|++||+++++|++|++|.+.         +++...++|++++|.+|+++ ++||++...+
T Consensus       177 ~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~---------id~~~~gvD~~~~s~hK~l~g~pG~~l~v~~  247 (406)
T TIGR01814       177 LSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVP---------LDLHDWGVDFACWCTYKYLNAGPGAGAFVHE  247 (406)
T ss_pred             EeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcc---------cccccCCCCEEEEcCccccCCCCCeEEEEeh
Confidence            9999999999999999999999999999999999987653         34444567999999999984 5565543322


Q ss_pred             HHHHHHHhcCCc-------e-------------ee-cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhcc
Q 011567          330 RVVDHQRLSSSG-------Y-------------VF-SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       330 ~~~~~~~~~~~~-------~-------------~f-s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~  386 (483)
                      +..+.+.....+       +             .| .++.|...++++.++++++.+.  +...++.+++.+++++.|.+
T Consensus       248 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  327 (406)
T TIGR01814       248 KHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKA  327 (406)
T ss_pred             hhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence            222222211001       0             01 1234556677777899988653  56788899999999998877


Q ss_pred             C----CCceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cC
Q 011567          387 I----HGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SA  457 (483)
Q Consensus       387 ~----~~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~  457 (483)
                      +    +++++.++.    .++++.+.++ .      +   .+++.+.+ .++||.+....         +..||+++ +.
T Consensus       328 ~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~------~---~~~~~~~L-~~~gi~v~~~~---------~~~iRiS~~~~  387 (406)
T TIGR01814       328 RCGGPPVLTIITPRDHAQRGCQLSLTHP-V------P---GKAVFQAL-IKRGVIGDKRE---------PSVIRVAPVPL  387 (406)
T ss_pred             hcCCCCceEEeCCCChhhcCCeEEEEec-C------C---HHHHHHHH-HHCCEEEeccC---------CCeEEEechhc
Confidence            5    347776532    3457777763 1      1   23566654 45699875321         23599999 68


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRIS  475 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~  475 (483)
                      .+|++||++++++|++++
T Consensus       388 ~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       388 YNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            999999999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.93  E-value=1.1e-22  Score=206.64  Aligned_cols=339  Identities=15%  Similarity=0.158  Sum_probs=221.5

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C--C-CC-EEEe-cc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G--T-PD-SILY-SY  177 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g--~-e~-~i~~-~s  177 (483)
                      +|++++||..+.. .+..++.+.+++.+.+......      .|+...-..+|++.+|+++    |  . ++ .|+. ++
T Consensus        28 ~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G  100 (388)
T PRK07366         28 AGKELIDLSLGSS-DLPAPAHALEAIAQSLHDPSTH------GYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIG  100 (388)
T ss_pred             cCCCeEEeCCCCC-CCCCCHHHHHHHHHHHhCcccC------CCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCC
Confidence            4677899998743 2434688899988877542211      1221122345666666655    4  2 23 4555 45


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC----HHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND----MDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +.+++..++.+++++||.|+++.+++......++..|.+++.++.++    ..+++++.+....       +.++|++.+
T Consensus       101 s~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~l~~  173 (388)
T PRK07366        101 SQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA-------QARLMVLSY  173 (388)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc-------cceEEEEeC
Confidence            56888899999999999999999999998888899999988876531    1223333333222       245666777


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC-ceeEEEccccccccCCC---ceee
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD-KIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~-~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      .+|++|.+.+   +++|+++|++||++||+||+|....+... .........++. +..|+++||||++|.+|   ||++
T Consensus       174 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v  252 (388)
T PRK07366        174 PHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE-VEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI  252 (388)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC-CCCCChhhCCCCcccEEEEeecccccCCcchhheehc
Confidence            8899999988   67788899999999999999987655321 101111222222 23578899999998666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      +++++++.+......+.++.  ++....++.+++...+ ..++.++.++++.+.+.+.|++. ++.+..+..+.++++.+
T Consensus       253 ~~~~li~~l~~~~~~~~~~~--~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~  329 (388)
T PRK07366        253 GNAQLIQALRQVKAVVDFNQ--YRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKL  329 (388)
T ss_pred             CCHHHHHHHHHHHhhcccCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEEC
Confidence            99999988765443333332  2323333444442111 11346777888888899999876 76655455677888887


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +....   .+   ..++++.++++.||.+.++......   .++.+||++.  .++++++++++.|+++
T Consensus       330 ~~~~~---~~---~~~~~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~--~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        330 PEPWQ---GN---SVEFCTQLVAQTGVAASPGSGFGKS---GEGYVRFALV--HDPDILEEAVERIAAF  387 (388)
T ss_pred             CcccC---CC---HHHHHHHHHHhCCEEEeCchHhCcC---CCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            53210   01   2356666667779999987533210   1235999986  4799999999999875

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.6e-22  Score=205.77  Aligned_cols=331  Identities=15%  Similarity=0.208  Sum_probs=216.2

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---C-CEEEe-ccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---P-DSILY-SYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e-~~i~~-~sG  178 (483)
                      |++++||..++.... .++.+.+++.+.+.....      ..|+...-..+|++.+|+++    |.   + +.+++ +++
T Consensus        34 g~~~i~l~~g~p~~~-~p~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~  106 (394)
T PRK05942         34 GLDLIDLGMGNPDGA-APQPVIEAAIAALADPQN------HGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS  106 (394)
T ss_pred             CCCeEEcCCCCCCCC-CCHHHHHHHHHHHhCCCC------ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence            567899998866544 456678877777653211      11222222345666666665    42   2 33544 666


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ++++..++.+++++||.|+++.++|......+...|.+++.++.+       |++++++.+..          ++++|++
T Consensus       107 ~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----------~~k~i~l  176 (394)
T PRK05942        107 KEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ----------QAKILYF  176 (394)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc----------cceEEEE
Confidence            788989999999999999999999988887777888888777542       45666655532          2567776


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      ..++|++|.+.+   +++|+++|++||+++|+||+|.......  .-......++. .+..++++||||.+|..|   ||
T Consensus       177 ~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~  254 (394)
T PRK05942        177 NYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDG--YQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGF  254 (394)
T ss_pred             cCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCC--CCCCChhhCCCccccEEEEecchhccCChhhheee
Confidence            667889999998   7889999999999999999998665421  11111111211 234677899999998777   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      +++++++++.++.......++  .+.....++.++++..++ ..+.+++++++.+.+.+.|++. ++.+..+..+.++++
T Consensus       255 i~~~~~l~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~~  331 (394)
T PRK05942        255 VVGNRHIIQGLRTLKTNLDYG--IFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWV  331 (394)
T ss_pred             eecCHHHHHHHHHHHhhcccC--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeeEEEE
Confidence            999999998887543322232  234444455555643221 1346777888888899999876 777665444446777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .++...     +   ..+++.++++++||.+.++.....   ..+..+|+++.  .+.+.+.++++.+.+
T Consensus       332 ~~~~~~-----~---~~~~~~~~l~~~gV~v~~g~~f~~---~~~~~iRis~~--~~~~~l~~~l~~l~~  388 (394)
T PRK05942        332 PCPVGM-----G---STDFALNVLQKTGVVVTPGNAFGE---GGEGYVRISLI--ADCDRLGEALDRLKQ  388 (394)
T ss_pred             ECCCCC-----C---HHHHHHHHHHHCCEEEeCChhhCc---CCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            774321     1   124555667778999987653321   01245999996  345566666655544

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.93  E-value=9.6e-23  Score=207.06  Aligned_cols=337  Identities=14%  Similarity=0.131  Sum_probs=225.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----C-CEEEecccH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----P-DSILYSYGL  179 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e-~~i~~~sG~  179 (483)
                      ..+|||..++. .+...+.+.+++.+.+...-.....   ..|    ..+|++.+++++    |.    + +.++.++++
T Consensus        30 ~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g----~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~  101 (391)
T PRK07309         30 PGILKLTLGEP-DFTTPDHVKEAAKRAIDANQSHYTG---MAG----LLELRQAAADFVKEKYNLDYAPENEILVTIGAT  101 (391)
T ss_pred             CCeEEcCCCCC-CCCCCHHHHHHHHHHHhcCCCCCCC---CCC----cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence            45899998743 2334577888888777642111111   123    345666666654    32    2 455557778


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +++..++.++.++||.|++..+.|......++..|.+++.++.+      |++++++.+++..+       ++++|++..
T Consensus       102 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-------~~~~i~l~~  174 (391)
T PRK07309        102 EALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD-------KLKAVILNY  174 (391)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC-------CeEEEEEEC
Confidence            99999999999999999999999988888888889888777642      56777777654322       256777666


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccc-cCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      ++|++|...+   +++|+++|++||+++|+||+|+...+ +.....+.+   ..+ +..++++|+||++|..|   ||++
T Consensus       175 P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~---~~~-~~~i~~~S~SK~~g~~GlRvG~~v  250 (391)
T PRK07309        175 PANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAE---YLP-DQTILINGLSKSHAMTGWRIGLIF  250 (391)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHH---hcc-CCEEEEecChhhccCccceeEEEE
Confidence            6889999877   89999999999999999999987655 211111111   122 23588899999998777   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      +++++++.+.... .+... +.+++...++.+.++.... ....++.++++.+++.+.|++. ++.+..+..+.++++.+
T Consensus       251 ~~~~~~~~~~~~~-~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l  327 (391)
T PRK07309        251 APAEFTAQLIKSH-QYLVT-AATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKI  327 (391)
T ss_pred             eCHHHHHHHHHHH-hhccc-CCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEEC
Confidence            9999988876542 23322 2344544555555542111 1235667788888899999886 77766554555667666


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +....   .   ...++++++++++||.+.++......   .+..+|++++.  +.+++++++++|++++++.
T Consensus       328 ~~~~~---~---~~~~~~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        328 PAGYN---Q---DSFKFLQDFARKKAVAFIPGAAFGPY---GEGYVRLSYAA--SMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             CCCCC---C---CHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            43211   0   12356666666679999887542210   12459999874  6899999999999988653

>PLN02187 rooty/superroot1

Probab=99.93  E-value=6.5e-23  Score=211.65  Aligned_cols=346  Identities=14%  Similarity=0.092  Sum_probs=225.4

Q ss_pred             CeeEEEeecCCC--CC-CCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEec
Q 011567          108 GKEVVNFASANY--LG-LIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYS  176 (483)
Q Consensus       108 G~~~id~~s~~~--lG-~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~  176 (483)
                      ++.+|+|..++.  .. +...+++.+++.+.++.. .+     ..|+...-..+|++.+|++++        .++.++.+
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~-~~-----~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~  138 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSG-KG-----NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTA  138 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCC-CC-----CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence            678999998843  33 334578888888888752 11     123333335667788888763        23445556


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++++++..++.+++++||.|+++.+++..+...+...|.+++.++.   +    |+++|++.+..          .++++
T Consensus       139 G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~----------~~~~v  208 (462)
T PLN02187        139 GCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE----------NTVAM  208 (462)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCC----------CcEEE
Confidence            6679999999999999999999999998887778888888877753   2    56667655432          24455


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..++|++|.+.+   +++|+++|++||+++|+||+|...+++.  ........+.....-++++||||+++.+|   |
T Consensus       209 ~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~--~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG  286 (462)
T PLN02187        209 VVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGD--NPFVSMGKFASIVPVLTLAGISKGWVVPGWKIG  286 (462)
T ss_pred             EEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCceeHHHhccCCcEEEEecchhhcCCccceeE
Confidence            55555789999998   8899999999999999999998766542  11111111111222588899999998777   9


Q ss_pred             eeecc-H-HH---HHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhccCCCcee-ecC
Q 011567          324 FCTGS-A-RV---VDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLSI-ASN  395 (483)
Q Consensus       324 ~i~~~-~-~~---~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~  395 (483)
                      |++++ + .+   ++.+......+..+.+.+.+...++.++++.-  ....+.++.++++.+.+.+.|+++++... ..+
T Consensus       287 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P  366 (462)
T PLN02187        287 WIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKP  366 (462)
T ss_pred             EEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCC
Confidence            99873 3 22   23333322233333333556666666666421  11134677788888999999988744332 223


Q ss_pred             CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+.++++.+.........+   ..+++..+++++||.+.++.....     ++.+||++..  .++.+++++++|.+++
T Consensus       367 ~gg~fl~~~l~~~~~~~~~~---~~~~~~~ll~~~gV~v~pG~~fg~-----~~~iRis~~~--~~e~l~~al~rL~~~l  436 (462)
T PLN02187        367 ESCTYLLTKLELSLMDNIKD---DIDFCVKLAREENLVFLPGDALGL-----KNWMRITIGV--EAHMLEDALERLKGFC  436 (462)
T ss_pred             CEeEEEEeecChhhCCCCCC---HHHHHHHHHhhCCEEEECccccCC-----CCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence            35677777664211000001   124555566677999998754322     3459999864  6899999999999999


Q ss_pred             HHHHhc
Q 011567          476 AVVLRD  481 (483)
Q Consensus       476 ~~~~~~  481 (483)
                      ++..++
T Consensus       437 ~~~~~~  442 (462)
T PLN02187        437 TRHAKK  442 (462)
T ss_pred             HHhhhc
Confidence            876654

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.92  E-value=7.4e-23  Score=208.73  Aligned_cols=339  Identities=13%  Similarity=0.139  Sum_probs=226.5

Q ss_pred             CeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCCEEEecc
Q 011567          108 GKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSILYSY  177 (483)
Q Consensus       108 G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~~i~~~s  177 (483)
                      |++++||..+++-   .+...+.+.+++.+.++.....      .|+...-..+|++.++++++       .++.++.++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G  103 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYN------GYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSG  103 (401)
T ss_pred             CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcC
Confidence            4578999988553   4556788999988877752111      12222234667888888876       234556677


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +++++..++.+++++||.|++..+.+..+...+...|.+++.++.       -|++.+++.+..          .+++|+
T Consensus       104 ~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~  173 (401)
T TIGR01264       104 CSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE----------KTAALI  173 (401)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc----------CceEEE
Confidence            789999999999999999999999988888888888888877643       146666655432          245667


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ce
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      +...++++|.+.+   +++|+++|+++|+++|+||+|....+.  +........+.+....++++||||+++..|   ||
T Consensus       174 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~  251 (401)
T TIGR01264       174 VNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS--GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGW  251 (401)
T ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC--CcccccHHHcCCCCcEEEEccCcccCCCccceEEE
Confidence            7777889999887   788999999999999999999865543  221211122333222578899999988776   99


Q ss_pred             eeccH------HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567          325 CTGSA------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLSIASNP  396 (483)
Q Consensus       325 i~~~~------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~  396 (483)
                      +++++      ++++.++..... .++  .++....++.+.++..  ....+.++.++++.+.+.+.|++++++.+..+.
T Consensus       252 iv~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~  328 (401)
T TIGR01264       252 IIIHDRRGILRDIRDGLVKLSQR-ILG--PCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPS  328 (401)
T ss_pred             EEecCcchhHHHHHHHHHHHhhc-cCC--CCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Confidence            98763      344444332211 112  2444545555555421  111346777888888899999887676655556


Q ss_pred             CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          397 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       397 ~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+.++++.++.....   +.....+++..+++++||.+.++.....     ++.+|+++..  +++++++++++|.++++
T Consensus       329 ~g~f~~~~~~~~~~~---~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----~~~iRis~~~--~~~~l~~~l~rl~~~~~  398 (401)
T TIGR01264       329 GAMYMMVGIEMEHFP---EFKNDVEFTERLVAEQSVFCLPGSCFEY-----PGFFRVVLTV--PVVMMEEACSRIQEFCE  398 (401)
T ss_pred             eeeEEEEEecccccC---CCCCHHHHHHHHHHhCCEEEeCchhcCC-----CCeEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence            788888887531000   0001235667777677999988754321     3459999874  58999999999998876


Q ss_pred             H
Q 011567          477 V  477 (483)
Q Consensus       477 ~  477 (483)
                      +
T Consensus       399 ~  399 (401)
T TIGR01264       399 R  399 (401)
T ss_pred             c
Confidence            4

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.92  E-value=7.6e-23  Score=208.59  Aligned_cols=333  Identities=14%  Similarity=0.151  Sum_probs=219.6

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC---cccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG---FYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~---~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      -|+|.++..   . .++.+.+++.+.++... +....+.   .+...+...++++.+++++|.+  +.++.++|++++..
T Consensus         5 ~yld~aa~~---~-~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~   79 (402)
T TIGR02006         5 IYLDYAATT---P-VDPRVAEKMMPYLTEKF-GNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNL   79 (402)
T ss_pred             EEeeCCcCC---C-CCHHHHHHHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence            578877653   2 56889999988886542 1111111   1111246778899999999964  34555777888888


Q ss_pred             hhhhh----ccCCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          185 AIPCF----CKKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       185 ai~~~----~~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++.++    .++||.|+++...|.++....   +..|.+++.++.+     |++++++.+++          .+++|++.
T Consensus        80 ~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----------~~~lv~v~  149 (402)
T TIGR02006        80 AIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD----------DTILVSIM  149 (402)
T ss_pred             HHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC----------CCEEEEEE
Confidence            77664    368999999999998876554   3347788777643     56667665532          26789999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      ++++++|.+.|+++|.++|++||+++++|+++++|...         +++....+|+++.|.+|.+|+.| |+++.+++.
T Consensus       150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~  220 (402)
T TIGR02006       150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------INVNELKVDLMSISGHKIYGPKGIGALYVRRKP  220 (402)
T ss_pred             CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCccccCCCEEEEehhhhcCCCceEEEEEccCC
Confidence            99999999999999999999999999999999976542         22222356999999999888655 666555433


Q ss_pred             HHHHHhc--CCce--ee-cCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEE
Q 011567          332 VDHQRLS--SSGY--VF-SASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVF  402 (483)
Q Consensus       332 ~~~~~~~--~~~~--~f-s~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~-i~~  402 (483)
                      ...+...  +.++  .| .++.+...+.+..++++.+++. +...++.+++.+++++.|++++++.+.++.  ..| ++.
T Consensus       221 ~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~  300 (402)
T TIGR02006       221 RVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLN  300 (402)
T ss_pred             CCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE
Confidence            2221111  1010  12 2345565666666788877643 456788889999999999888787765432  232 333


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cC-----CCCCceEEEccCCCCHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KC-----RLPVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~-----~~~~~lRi~~~~~~t~edi~~~~  468 (483)
                      +.+...      +   .+.+... +  +++.++.+......         ..     .....||++++..+|++|||+++
T Consensus       301 v~f~~~------~---~~~~~~~-l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~  368 (402)
T TIGR02006       301 VSFNYV------E---GESLIMA-L--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAV  368 (402)
T ss_pred             EEEeCc------C---HHHHHHh-c--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHH
Confidence            444311      1   1123332 3  36776654332110         00     01245999999999999999999


Q ss_pred             HHHHHHHHHH
Q 011567          469 ESLKRISAVV  478 (483)
Q Consensus       469 ~~l~~~~~~~  478 (483)
                      ++|+++++.+
T Consensus       369 ~~l~~~~~~~  378 (402)
T TIGR02006       369 KLVKSAIDKL  378 (402)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.92  E-value=1.2e-22  Score=207.10  Aligned_cols=346  Identities=16%  Similarity=0.179  Sum_probs=226.7

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEe-cccHHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILY-SYGLSTMF  183 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~-~sG~~a~~  183 (483)
                      |.+++|+..+.. .+..++.+.+++.+.+.+...+.   ....|..++...+++.+++.+|.   ++.+++ +++++|+.
T Consensus        32 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~  107 (402)
T PRK06107         32 GRSIVDLTVGEP-DFDTPDHIKQAAVAAIERGETKY---TLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF  107 (402)
T ss_pred             cCCEEEcCCCCC-CCCCCHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            456788888743 23246888899888887522211   11345566777777777777664   233555 55579999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      .++.++.++||.|+++.++|..+...+...+..++.++..       |++++++.+..          ++++|++..+.|
T Consensus       108 ~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~----------~~~~v~l~~p~N  177 (402)
T PRK06107        108 LALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP----------RTRWLILNAPSN  177 (402)
T ss_pred             HHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc----------CceEEEEECCCC
Confidence            8998899999999999998777776677677666655432       34555554421          255666666788


Q ss_pred             CCCCccC---hHHHHHHHHHc-CcEEEEeCccccccccCCCCccccccCCCC--CceeEEEccccccccCCC---ceeec
Q 011567          257 NSGQIAP---LDELIRLKEKY-RFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~-~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      ++|.+.+   +++|+++|++| ++++|+||+|+...+..  ........+.+  .+..++++||||.+|.+|   ||+++
T Consensus       178 PtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~  255 (402)
T PRK06107        178 PTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDD--EPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG  255 (402)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCC--CCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec
Confidence            9999987   67888899998 99999999998644432  11111111111  134688899999998666   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.++........  ..+.....++...++.-+ ...+.++.++++.+.+.+.|++++|+.+..+..+.++++.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~  333 (402)
T PRK06107        256 PADLIAAINKLQSQSSS--CPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCA  333 (402)
T ss_pred             CHHHHHHHHHHHHhccc--CCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecc
Confidence            99999887664322222  234555555555553101 112456777888888999998876777665556667777763


Q ss_pred             CCCCC--chhh-HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGS--MKND-LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       407 ~~~~~--~~~~-~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ...+.  .+.. .....+++..+++++||.+.++.....     ++.+|+++..  ++++++++++.|++.++++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-----~~~iRis~~~--~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        334 GLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL-----SPYFRLSIAT--SLETLEEACARIERAVAAL  401 (402)
T ss_pred             cccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC-----CCeEEEEeCC--CHHHHHHHHHHHHHHHHhc
Confidence            21000  0000 001235666677778999998765432     3569999984  7999999999999988765

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=4.2e-23  Score=207.37  Aligned_cols=316  Identities=15%  Similarity=0.136  Sum_probs=218.4

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~  183 (483)
                      +++.+++|..+ |.+|.  +|.+++++.+.+....        .| ...-..+|++.||++++.+ +.|++ +++++++.
T Consensus        27 ~~~~~i~l~~nen~~~~--~~~v~~a~~~~~~~~~--------~Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~   95 (366)
T PRK01533         27 GDHSFVKLASNENPFGC--SPRVLDELQKSWLDHA--------LY-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQ   95 (366)
T ss_pred             CCCceEEeCCCCCCCCC--CHHHHHHHHHHHHhcC--------cC-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHH
Confidence            35678999988 66654  5889999888765421        11 1122467999999999854 45555 55568888


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      .++.+++++||.|++..+++..+...+...|.+++.++.+    |+++|++.+++          .++++++..++|++|
T Consensus        96 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~----------~~~~v~i~~P~NPTG  165 (366)
T PRK01533         96 IISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDN----------DTKIVWICNPNNPTG  165 (366)
T ss_pred             HHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCCCCcCHHHHHHHhCc----------CCcEEEEeCCCCCCC
Confidence            9999999999999999999999888888999988887653    56666665532          245666667789999


Q ss_pred             CccChHH---HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567          260 QIAPLDE---LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD  333 (483)
Q Consensus       260 ~i~~L~~---l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~  333 (483)
                      .+.+.++   |+++|++++ ++|+||+|...............  ++..+..|+++||||++|.+|   ||+++++++++
T Consensus       166 ~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~--~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~  242 (366)
T PRK01533        166 TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPL--LEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIE  242 (366)
T ss_pred             CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHH--hccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHH
Confidence            9999554   555555665 67789999754332100011111  122334688999999999777   99999999998


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      .++.....  +  +.+.+...++.++|+.-+...+..+..+++.+++.+.++.+ |+++.. ++++++++.+.+      
T Consensus       243 ~l~~~~~~--~--~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~-~~~nf~~~~~~~------  310 (366)
T PRK01533        243 KLNVVRLP--F--NVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIPFYQ-SQTNFIFLPVEN------  310 (366)
T ss_pred             HHHHhcCC--C--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCC-CcCcEEEEeCCC------
Confidence            88654322  2  34677777777777421111234566666777777777775 777654 478888887631      


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                           ..++.+.++ ++||.+++.          ++.+||++   -+.+|.++++++|++++..
T Consensus       311 -----~~~~~~~l~-~~GI~Vr~~----------~~~iRis~---~~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        311 -----GGEIYEACA-HAGFIIRPF----------PNGVRITV---GTREQNEGVISVLQQHFEN  355 (366)
T ss_pred             -----HHHHHHHHH-HCCcEEccC----------CCceEEeC---CCHHHHHHHHHHHHHHHHh
Confidence                 124566555 569999862          24599998   5889999999999988654

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.92  E-value=8.8e-23  Score=206.70  Aligned_cols=333  Identities=15%  Similarity=0.164  Sum_probs=223.5

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      ++++|++..+ +.++  .+|.+.+++.+.+......      .|+...-..++++++|+++|.+  +.++++++++++..
T Consensus        27 ~~~~i~l~~~~~~~~--~~~~~~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~   98 (380)
T PRK06225         27 DKEMIWMGQNTNHLG--PHEEVREAMIRCIEEGEYC------KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYL   98 (380)
T ss_pred             cCCeEEccCCCCCCC--CCHHHHHHHHHHHhcCCCC------CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHH
Confidence            3568898877 4443  5689999999888753221      2333334678999999999854  56666888899999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      ++.+++++||.|++.++.|......+...|.+++.++.        .|++++++.+..          .+++|++....+
T Consensus        99 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~l~~p~N  168 (380)
T PRK06225         99 VMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE----------NTRLIYLIDPLN  168 (380)
T ss_pred             HHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC----------CceEEEEeCCCC
Confidence            99999999998888888887777777788888887763        145556554432          245655555677


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      ++|.+.+   +++|+++|++||+++|+||+|+....+   ....  ..+.+ +..+++.|+||++|..|   ||++++++
T Consensus       169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~---~~~~--~~~~~-~~~i~~~s~SK~~g~~G~RiG~i~~~~~  242 (380)
T PRK06225        169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE---HTLA--AEYAP-EHTVTSYSFSKIFGMAGLRIGAVVATPD  242 (380)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc---CCch--hhcCC-CCEEEEeechhhcCCccceeEEEecCHH
Confidence            8899876   899999999999999999998643222   1111  12222 34677889999998666   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKS  408 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~  408 (483)
                      +++.++.... ..+  +.+....+++.++++...+ .+...+..+++.+.+.+.|++++++.+. .++.++++++.+...
T Consensus       243 l~~~~~~~~~-~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  319 (380)
T PRK06225        243 LIEVVKSIVI-NDL--GTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA  319 (380)
T ss_pred             HHHHHHHHHh-ccc--CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc
Confidence            9988765421 122  2355565555555543211 1234455566677788888876664332 234567777777432


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .  .     ...++++.+. ++||.+.++.+.....  .+..+|+++.  .++++++++++.|++++.++-
T Consensus       320 ~--~-----~~~~l~~~l~-~~gi~v~~g~~~~~~~--~~~~iR~s~~--~~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        320 G--I-----DPEDLVEYLL-ERKIFVRQGTYTSKRF--GDRYIRVSFS--IPREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             c--C-----CHHHHHHHHH-HCCEEEcCCcccCcCC--CCceEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence            1  0     1235666655 5699998764322100  1235999986  489999999999999988653

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.92  E-value=3.2e-22  Score=204.06  Aligned_cols=350  Identities=14%  Similarity=0.162  Sum_probs=221.7

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEe-cccHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILY-SYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~-~sG~~a  181 (483)
                      .|.+++||..++..+. ..+.+.+++.+.+.....  .+.....|...+...+++.+.+..|.    ++.++. +++.++
T Consensus        31 ~~~~~~~l~~g~p~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a  107 (403)
T PRK08636         31 AGEDIIDFSMGNPDGP-TPQHIIDKLCESAQKPKT--HGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG  107 (403)
T ss_pred             cCCCEEEcCCcCCCCC-CCHHHHHHHHHHhcCCcc--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence            3557899988765443 345577777665543111  11111233334444444444444352    223555 555688


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +..++.+++++||.|++++++|..+...+...|.+++.++.+       |++++.+.+++.-..   .+.+++++++..+
T Consensus       108 l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~~~i~~~~P  184 (403)
T PRK08636        108 YVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRE---SSPKPKYVVVNFP  184 (403)
T ss_pred             HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhh---ccCCceEEEEeCC
Confidence            899999999999999999999999988889999998776531       444443333322110   1113567777777


Q ss_pred             cCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ceeec
Q 011567          255 YQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       255 ~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      +|++|.+.+   +++|+++|++|++++|+||+|+...+..  ........++. .+..++++|+||++|.+|   ||+++
T Consensus       185 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~  262 (403)
T PRK08636        185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG  262 (403)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC--CCCCChhcCCCccccEEEEEecccccCCccceeeeeeC
Confidence            899999998   6889999999999999999998665432  21111122321 234566799999998666   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.+........++.+ ++.. .++..+++..+. ..++++.++++.+.+.+.|++. ++.+..+..+.++++.++
T Consensus       263 ~~~li~~~~~~~~~~~~~~~-~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~  339 (403)
T PRK08636        263 NKKLVGALKKIKSWLDYGMF-TPIQ-VAATIALDGDQSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIP  339 (403)
T ss_pred             CHHHHHHHHHHHHHhcccCC-hHHH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECC
Confidence            99998877543222122222 2333 223233321111 1245666777888888888875 676655557888888885


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.....     ...+++..++++.||.+.++......   .++.+||++.  .++++++++++.|+++++.
T Consensus       340 ~~~~~~-----~~~~l~~~ll~~~gV~v~pg~~f~~~---~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        340 EPARHL-----GSLEFSKQLLTEAKVAVSPGIGFGEY---GDEYVRIALI--ENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CccCCC-----CHHHHHHHHHHhCCEEEecchhhCcC---CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            421100     12356666676779999987543211   1245999986  6899999999999998865

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.92  E-value=8.6e-24  Score=202.88  Aligned_cols=337  Identities=18%  Similarity=0.228  Sum_probs=236.8

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CC-EEEecccHHHHHhhhhhhccCC
Q 011567          119 YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PD-SILYSYGLSTMFSAIPCFCKKG  193 (483)
Q Consensus       119 ~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~-~i~~~sG~~a~~~ai~~~~~~g  193 (483)
                      +..+..++.+.+++++.+..-..+.. .| -||..++...|.+.+++++|.    ++ .++.+++.+++.+++.+++++|
T Consensus        40 fp~~~~P~fv~ea~~~~~~~~~~~qY-t~-~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~G  117 (420)
T KOG0257|consen   40 FPDFPPPKFVTEAAKNAAKEPSTNQY-TR-GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPG  117 (420)
T ss_pred             CCCCCCcHHHHHHHHHHhccchhccc-cc-cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCC
Confidence            33444566788888888876423222 22 478888999999999998873    34 4455666699999999999999


Q ss_pred             cEEEEcCCchhHHHhHhhhcCCeEEEecCC-------------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          194 DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       194 diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      |.|++-++++.++....++.|.+.+.++.+             |+++||..+.+          ++++|+++.++|++|.
T Consensus       118 DeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~----------kTk~Ii~ntPhNPtGk  187 (420)
T KOG0257|consen  118 DEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE----------KTKAIILNTPHNPTGK  187 (420)
T ss_pred             CEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC----------CccEEEEeCCCCCcCc
Confidence            999999999999999999999887766543             78888887765          4789999999999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567          261 IAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD  333 (483)
Q Consensus       261 i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~  333 (483)
                      +.+   |++|++||+|||+++|.||+|...++... .-.++..-|+  .+..|.++|+||++|..|   ||+++++.++.
T Consensus       188 vfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm--~ertitvgS~gKtf~~TGWrlGW~igp~~L~~  265 (420)
T KOG0257|consen  188 VFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGM--YERTITVGSFGKTFGVTGWRLGWAIGPKHLYS  265 (420)
T ss_pred             ccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCch--hheEEEeccccceeeeeeeeeeeeechHHhhh
Confidence            998   99999999999999999999987665421 1111212333  455788999999999888   99999999988


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHH-h------cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVL-E------ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~------~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      +.+.-....+|..+.+-..+.++.-+++.. .      ...++.+.++++++.|.+.|.++ |+++..+..+++++..+.
T Consensus       266 ~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs  344 (420)
T KOG0257|consen  266 ALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFS  344 (420)
T ss_pred             hHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEecc
Confidence            887766667777653332232222233321 1      01237788999999999999998 999998888888888886


Q ss_pred             CCCCCchh----hHHHHHHHHHHHHHhCCEEEEeecccccccCC-CC-CceEEEccCCCCHHHHHHHHHHHH
Q 011567          407 KSTGSMKN----DLQLLEDIADWALKEDGVFVVTSKRSMLDKCR-LP-VGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       407 ~~~~~~~~----~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~-~~-~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ........    +...-.+++.+++++.|+.+.|......+.+. .. .-+|++..  -+++-++++.+.++
T Consensus       345 ~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~--k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  345 LAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFC--KADETLRKAIERLK  414 (420)
T ss_pred             ccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHH--hhHHHHHHHHHHHh
Confidence            22111000    11112356777888888877665432221111 00 11566553  45666777777666

>PLN02656 tyrosine transaminase

Probab=99.92  E-value=9.2e-23  Score=208.28  Aligned_cols=343  Identities=15%  Similarity=0.121  Sum_probs=225.0

Q ss_pred             ECCeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEE
Q 011567          106 ISGKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSIL  174 (483)
Q Consensus       106 ~~G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~  174 (483)
                      ..|+.++||..+++-   .+..++.+.+++.+.+......      .|+...-..++++.++++++        .++.++
T Consensus        28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~  101 (409)
T PLN02656         28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFN------GYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFI  101 (409)
T ss_pred             ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE
Confidence            357889999988552   3546788999998888752211      12222223556677777653        235566


Q ss_pred             ecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccE
Q 011567          175 YSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       175 ~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      ++++++++..++.+++++||.|+++.+.|..+.......|.+++.++..       |++++++.++.          .++
T Consensus       102 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~----------~~~  171 (409)
T PLN02656        102 TSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ----------NTV  171 (409)
T ss_pred             eCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc----------Cce
Confidence            6777899999999999999999999999987777777778888776542       55666655432          144


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      ++++..+++++|.+.+   +++|+++|++||+++|+||+|....+..  +.......+.....-|+++||||+|+.+|  
T Consensus       172 ~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR  249 (409)
T PLN02656        172 ALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS--NPFVPMGVFGSIVPVLTLGSLSKRWIVPGWR  249 (409)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC--CCcccHHHhcccCcEEEEcccchhccCccee
Confidence            5555556888999875   8899999999999999999998655532  21111111122233688899999998777  


Q ss_pred             -ceeecc--------HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-h-cCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567          323 -GFCTGS--------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-E-ENPDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       323 -G~i~~~--------~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~-~~~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                       ||++++        +++++.+......  + .+.+.+...++.++++.. + ...+.++.++++.+.+.+.|++++++.
T Consensus       250 iG~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~  326 (409)
T PLN02656        250 LGWFVTTDPSGSFRDPKIVERIKKYFDI--L-GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCIT  326 (409)
T ss_pred             EEEEEEeCcccccccHHHHHHHHHHHhh--h-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence             999873        5677766543222  1 123455556666666421 1 113456778888888999998764443


Q ss_pred             e-ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          392 I-ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       392 i-~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      . ..+..+.++++.++........+   ..+++.+++++.||.+.++.....     ++.+||++..  ++++++++++.
T Consensus       327 ~~~~p~gg~~~w~~l~~~~~~~~~~---~~~~~~~~l~~~gV~v~pg~~fg~-----~~~iRi~~~~--~~e~l~eal~r  396 (409)
T PLN02656        327 CPHKPEGSMAVMVKLNLSLLEDISD---DIDFCFKLAREESVIILPGTAVGL-----KNWLRITFAA--DPSSLEEALGR  396 (409)
T ss_pred             CCcCCCeEEEEEEecchhhcCCCCC---HHHHHHHHHHhCCEEEecchhcCC-----CCeEEEEeCC--CHHHHHHHHHH
Confidence            2 23345667777774210000000   123444556677999998754422     3459999984  79999999999


Q ss_pred             HHHHHHHHH
Q 011567          471 LKRISAVVL  479 (483)
Q Consensus       471 l~~~~~~~~  479 (483)
                      |++++.+..
T Consensus       397 l~~~~~~~~  405 (409)
T PLN02656        397 IKSFYLRHS  405 (409)
T ss_pred             HHHHHHHhc
Confidence            999887654

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.92  E-value=6.7e-23  Score=215.13  Aligned_cols=340  Identities=16%  Similarity=0.206  Sum_probs=220.5

Q ss_pred             CCeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh------CC-CCEEEe-c
Q 011567          107 SGKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL------GT-PDSILY-S  176 (483)
Q Consensus       107 ~G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~------g~-e~~i~~-~  176 (483)
                      .|+.+|+|+.+  +.+++..++.+.+++.+.+... .+       |+...-..+|++.||+++      +. ++.|++ +
T Consensus       144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~-~~-------Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~  215 (517)
T PRK13355        144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT-EG-------YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGN  215 (517)
T ss_pred             cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC-CC-------CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeC
Confidence            57889999997  4467766788999998887642 21       222223567777787776      32 234444 5


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++++++..++.++.++||.|+++.++|..+...+...|.+++.++.       .|++++++.+..          ++++|
T Consensus       216 G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----------~~k~i  285 (517)
T PRK13355        216 GVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS----------RTKAI  285 (517)
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc----------CceEE
Confidence            5668888999999999999999999999888888888988877653       156666655432          25566


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..++|++|.+.+   +++|+++|++|++++|+||+|...++..  ..........++..-++++||||+++..|   |
T Consensus       286 ~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~--~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG  363 (517)
T PRK13355        286 VIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDG--LEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIG  363 (517)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCC--CCcccHHHhCCCCeEEEEecchhhccCcccceE
Confidence            66666889999998   8999999999999999999998665532  11111112223333455699999998766   9


Q ss_pred             eee--ccHHH----HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHhhccCCCceeec
Q 011567          324 FCT--GSARV----VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL---ITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       324 ~i~--~~~~~----~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~---~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      |++  +++++    ++.+.... ...++  .+.....++.++|+..+...+.   ..++.++.+++.+.|++++|+.+..
T Consensus       364 ~~i~~~~~~~~~~~~~~l~~~~-~~~~~--~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~  440 (517)
T PRK13355        364 WMILSGNKRIAKDYIEGLNMLA-NMRLC--SNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVK  440 (517)
T ss_pred             EEEeeCchhhHHHHHHHHHHHh-cCcCC--cChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence            987  44543    33332211 11122  2344444555555321100111   2344556788888998887888776


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..+.++++.+.........+    .+++..+|++.||.+.++..+...   .+..+||++.  .++++++++++.|+++
T Consensus       441 p~g~fy~~~~l~~~~~~~~~~----~~~~~~ll~~~gV~v~pg~~F~~~---~~~~~Ris~~--~~~~~l~~a~~rl~~~  511 (517)
T PRK13355        441 PKAAFYIFPKIDVKKFNIHDD----EQFALDLLHDKKVLIVQGTGFNWD---KPDHFRVVYL--PRLEDLEDAMDRLADF  511 (517)
T ss_pred             CCeeeEEEeecCcccCCCCCH----HHHHHHHHHhCCEEEeCcchhCCC---CcCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence            555555666664211000011    245555677789999987543210   1244999984  6899999999999998


Q ss_pred             HHHH
Q 011567          475 SAVV  478 (483)
Q Consensus       475 ~~~~  478 (483)
                      +...
T Consensus       512 ~~~~  515 (517)
T PRK13355        512 FSYY  515 (517)
T ss_pred             HHHh
Confidence            8653

>PRK08363 alanine aminotransferase; Validated

Probab=99.92  E-value=7.4e-23  Score=208.52  Aligned_cols=340  Identities=16%  Similarity=0.140  Sum_probs=222.8

Q ss_pred             CCeeEEEeecCCCC--CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEEec
Q 011567          107 SGKEVVNFASANYL--GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYS  176 (483)
Q Consensus       107 ~G~~~id~~s~~~l--G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~  176 (483)
                      .|+.++|++.+.+.  .+..++.+.+++.+.++....       .|+...-..+|++.+++++    |    .++.++.+
T Consensus        28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~-------~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~  100 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHN-------YYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTA  100 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCC-------CCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeC
Confidence            35689999998653  565678899999888764211       2322233466777777776    3    12445556


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEec-C------CCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK-H------NDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~-~------~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++++++..++.+++++||.|+++.++|..+...++..|.+++.++ .      .|.+++++.+..          ++++|
T Consensus       101 G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v  170 (398)
T PRK08363        101 AVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE----------KTKAI  170 (398)
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc----------ceEEE
Confidence            667899999999999999999999999998888888887776662 2      144555544422          24666


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..++|++|.+.+   +++|+++|++||+++|+||+|+...+.  +.... ...+......++++||||+++..|   |
T Consensus       171 ~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~--~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlRiG  247 (398)
T PRK08363        171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYE--GKHVS-PGSLTKDVPVIVMNGLSKVYFATGWRLG  247 (398)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccC--CcccC-HHHcCcCCcEEEEecchhccCCccceEE
Confidence            66677889999988   899999999999999999999865442  21111 111222223577899999998777   9


Q ss_pred             eeec--cHHHHHHHHhcCC---ceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCC
Q 011567          324 FCTG--SARVVDHQRLSSS---GYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPE  397 (483)
Q Consensus       324 ~i~~--~~~~~~~~~~~~~---~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~  397 (483)
                      |+++  ++++++.++....   ...++  .++....++.+++.... ...+..++++++.+.+.+.|.+++++.+..+..
T Consensus       248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g  325 (398)
T PRK08363        248 YIYFVDPEGKLAEVREAIDKLARIRLC--PNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQG  325 (398)
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhccccc--CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCe
Confidence            9886  6665554432211   11122  24444444444443211 112457778888899999998876777654444


Q ss_pred             CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          398 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       398 ~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.++++.+..... .  +   ..+++.++++++||.+.++......   .+..+|+++.  .++++++++++.|++++++
T Consensus       326 ~~~~~~~l~~~~~-~--~---~~~~~~~~l~~~gV~v~~g~~f~~~---~~~~iRis~~--~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        326 AFYIFPRIEEGPW-K--D---DKEFVLDVLHEAHVLFVHGSGFGEY---GAGHFRLVFL--PPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             EEEEEEEeccCCC-C--C---HHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            5455556643100 0  1   1234555667789999887543211   1234999985  5789999999999998876


Q ss_pred             HH
Q 011567          478 VL  479 (483)
Q Consensus       478 ~~  479 (483)
                      .+
T Consensus       395 ~~  396 (398)
T PRK08363        395 RL  396 (398)
T ss_pred             hc
Confidence            43

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.92  E-value=1.8e-23  Score=210.47  Aligned_cols=230  Identities=16%  Similarity=0.191  Sum_probs=181.6

Q ss_pred             ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHH
Q 011567          152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDS  227 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~  227 (483)
                      ..+.+.+||+++++++|.+++++++||++|+..++.++.++||.|+++...|.+...    .+...|.++..++++|+++
T Consensus        38 ~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~  117 (369)
T cd00614          38 GNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEA  117 (369)
T ss_pred             CChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHH
Confidence            457889999999999999999999999999999999999999999999888877553    3446678888899989888


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +++.+++          ++++|++|++++++|.+.|+++|+++|++||+++|+|++++.+.+..   .    ..   ..+
T Consensus       118 l~~~i~~----------~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~---~----~~---~g~  177 (369)
T cd00614         118 LEAAIKP----------ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR---P----LE---LGA  177 (369)
T ss_pred             HHHhcCC----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCC---h----hh---hCC
Confidence            8877743          26899999999999999999999999999999999999998664321   1    11   234


Q ss_pred             eEEEccccccccC----CCceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALAT----EGGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      |+++.|++|.+++    .||++++++ ++++.++....  .++..++|..++++...++.+   +..+++..+++.++.+
T Consensus       178 Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~g~~~~p~~a~~~l~~l~tl---~~r~~~~~~na~~la~  252 (369)
T cd00614         178 DIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL--ALGTILSPFDAWLLLRGLKTL---PLRMERHSENALKVAE  252 (369)
T ss_pred             cEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH--hhCCCCCHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHH
Confidence            8999999999973    368998877 78777764422  245567888887776666533   4578888999999999


Q ss_pred             hhccCCCceee-c----------------CCCCCEEEEEec
Q 011567          383 GLSDIHGLSIA-S----------------NPESPIVFLILE  406 (483)
Q Consensus       383 ~L~~~~~~~i~-~----------------~~~~~i~~l~l~  406 (483)
                      .|++.+++.-+ -                ...++++.+.++
T Consensus       253 ~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~  293 (369)
T cd00614         253 FLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK  293 (369)
T ss_pred             HHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence            99887654211 1                124778888885

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.92  E-value=4.4e-22  Score=207.23  Aligned_cols=341  Identities=14%  Similarity=0.118  Sum_probs=219.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEecccHHHHHhhhhhhc-cCCcEE
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYGLSTMFSAIPCFC-KKGDLI  196 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~sG~~a~~~ai~~~~-~~gdiI  196 (483)
                      ..+.+++.+.++..+.+.    ..|+...-..+|++.+|++++        .++.++.+++++++..++.++. .+||.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~V  166 (481)
T PTZ00377         91 ADVVARAKEYLNAIGGGT----GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGV  166 (481)
T ss_pred             HHHHHHHHHHHHhCCCcc----cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEE
Confidence            366777776666543211    223333334566666666653        1344455666788999999998 799999


Q ss_pred             EEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHH
Q 011567          197 VADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDE  266 (483)
Q Consensus       197 ~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~  266 (483)
                      +++.++|..+...++..|.+++.++.+       |+++|++.++....+    ..+++++++..++|++|.+.+   +++
T Consensus       167 lv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~k~l~l~~P~NPTG~~~s~e~~~~  242 (481)
T PTZ00377        167 MIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRN----GITPRALVVINPGNPTGQVLTRDVMEE  242 (481)
T ss_pred             EECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhc----CCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence            999999999999999999888777532       568888877543211    012455555566889999998   899


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccc---cc-cCCCCC----ceeEEEccccccc-cCCC---ceeec---cHHH
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLT---EH-CGVPVD----KIDIVTAAMGHAL-ATEG---GFCTG---SARV  331 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~---~~-~~v~~~----~~Di~~~s~~K~l-g~~G---G~i~~---~~~~  331 (483)
                      |+++|++|++++|+||+|...++.. +....   .. .++.++    ..-|+++||||++ +.+|   ||+++   ++++
T Consensus       243 i~~~a~~~~~~iI~De~Y~~l~~~~-~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~l  321 (481)
T PTZ00377        243 IIKFCYEKGIVLMADEVYQENIYDG-EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEV  321 (481)
T ss_pred             HHHHHHHCCCEEEEehhhHhhccCC-CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHH
Confidence            9999999999999999998655521 11111   10 122221    1247789999985 5444   99875   8888


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHH-----------HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCE
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDV-----------LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI  400 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-----------l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i  400 (483)
                      ++.+...... ..+  .++....++.++++.           ..+...+++.++++.+.+.+.|++++|+.+..+..+.+
T Consensus       322 i~~l~~~~~~-~~~--~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~f  398 (481)
T PTZ00377        322 REQIYKLASI-NLC--SNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMY  398 (481)
T ss_pred             HHHHHHHhhe-ecC--CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEE
Confidence            8877654322 222  345555555555531           11112334456788888999998887888775545666


Q ss_pred             EEEEecCCCCCchhhH----HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          401 VFLILEKSTGSMKNDL----QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       401 ~~l~l~~~~~~~~~~~----~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      +++.+..+........    .....++..++++.||.+.++.......  ....+|+++.  .+++++++++++|+++++
T Consensus       399 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~--~~~~~Rls~~--~~~e~l~~~l~rl~~~~~  474 (481)
T PTZ00377        399 AFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKP--GTYHFRITIL--PPEEQIEEMVKKIKEFHE  474 (481)
T ss_pred             EEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCC--CCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence            6655532111000000    0012345567777899999876443211  1235999986  678999999999999999


Q ss_pred             HHHhcC
Q 011567          477 VVLRDR  482 (483)
Q Consensus       477 ~~~~~~  482 (483)
                      +..+|.
T Consensus       475 ~~~~~~  480 (481)
T PTZ00377        475 SFMKKY  480 (481)
T ss_pred             HHHHhh
Confidence            988764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.92  E-value=5.2e-22  Score=203.03  Aligned_cols=341  Identities=16%  Similarity=0.177  Sum_probs=226.7

Q ss_pred             CCeeEEEeecCCCC-C--CCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------------
Q 011567          107 SGKEVVNFASANYL-G--LIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------------  169 (483)
Q Consensus       107 ~G~~~id~~s~~~l-G--~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------------  169 (483)
                      +|+.+|||..++.- .  +...+.+.+++.+.++.....      .|+...-..+|++.+|++++.              
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~------~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~  104 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECN------GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK  104 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCC------CCCCCCCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence            67789999998542 1  335678888888877751110      122222245677777776641              


Q ss_pred             CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhc
Q 011567          170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       170 e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~  242 (483)
                      ++.++.+++++++..++.+++++||.|+++.++|..+...++..|.++..++..       |+++|++.++.        
T Consensus       105 ~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~--------  176 (412)
T PTZ00433        105 DNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD--------  176 (412)
T ss_pred             hhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc--------
Confidence            344555666799999999999999999999999988888888889888777532       45666655432        


Q ss_pred             cCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc
Q 011567          243 KKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                        .+++|++...+|++|.+.+   +++|+++|++||+++|+||+|....++.  .-........+...-++++||||.+|
T Consensus       177 --~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~  252 (412)
T PTZ00433        177 --RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG--ATFTSVADFDTTVPRVILGGTAKNLV  252 (412)
T ss_pred             --CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC--CCccchhhccCCCceEEEccchhhcC
Confidence              2566677777889999877   7888999999999999999998655432  11111112221222478899999998


Q ss_pred             CCC---ceeec------cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-Hh-cCcHHHHHHHHHHHHHHHhhccCC
Q 011567          320 TEG---GFCTG------SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LE-ENPDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       320 ~~G---G~i~~------~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~-~~~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      .+|   ||+++      .+++++.++.... ..+  +.+++...++.+++.. .+ ...+.++.++++.+.+.+.|++..
T Consensus       253 ~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~-~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  329 (412)
T PTZ00433        253 VPGWRLGWLLLVDPHGNGGDFLDGMKRLGM-LVC--GPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECI  329 (412)
T ss_pred             CCCeeEEEEEEeCCcccHHHHHHHHHHHhh-ccC--CCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777   99885      2456666554321 122  3356655555555542 11 113466778888888999998765


Q ss_pred             CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHH
Q 011567          389 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~  468 (483)
                      ++.+..+..+.++++.++...-.   +.....++++.+++++||.+.++.....     ++.+|+++..  .++++++++
T Consensus       330 ~~~~~~p~gg~f~~~~l~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~~iRis~~~--~~e~l~~al  399 (412)
T PTZ00433        330 GLSPTMPRGSMFLMSRLDLEKFR---DIKSDVEFYEKLLEEENVQVLPGEIFHM-----PGFTRLTISR--PVEVLREAV  399 (412)
T ss_pred             CCcccCCCeeEEEEEEechhhcC---CCCCHHHHHHHHHHhcCEEEeCccccCC-----CCeEEEEecC--CHHHHHHHH
Confidence            67665555677888887431000   0001235777777667999988754332     3459999974  588999999


Q ss_pred             HHHHHHHHHH
Q 011567          469 ESLKRISAVV  478 (483)
Q Consensus       469 ~~l~~~~~~~  478 (483)
                      +.|.++++..
T Consensus       400 ~~l~~~~~~~  409 (412)
T PTZ00433        400 ERIKAFCERH  409 (412)
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.92  E-value=3.6e-22  Score=203.34  Aligned_cols=339  Identities=15%  Similarity=0.153  Sum_probs=219.1

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEe-cccHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILY-SYGLS  180 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~-~sG~~  180 (483)
                      .|++++||..+.. .+...+.+.+++.+.+... ...+   ...|..++...+++.+.+.+|.     ++.++. +++.+
T Consensus        27 ~~~~~i~l~~~~p-~~~~~~~~~~~~~~~~~~~-~~Y~---~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~  101 (396)
T PRK09147         27 ADLPPISLSIGEP-KHPTPAFIKDALAANLDGL-ASYP---TTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSRE  101 (396)
T ss_pred             cCCCeEecCCCCC-CCCCCHHHHHHHHHHhhhh-cCCC---CCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHH
Confidence            3778999998743 2324577888887765431 1111   1234444444444444444463     234555 55568


Q ss_pred             HHHhhhhhhccC---CcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          181 TMFSAIPCFCKK---GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       181 a~~~ai~~~~~~---gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++..++++++++   ||.|+++.+++..+...+...|.+++.++.+       |++.+++.+.+          ++++++
T Consensus       102 al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~----------~~k~i~  171 (396)
T PRK09147        102 ALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA----------RTQLLF  171 (396)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh----------ccEEEE
Confidence            888999999999   9999999999988888888889888887642       45666554432          255666


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc--cc---ccCCCCCceeEEEccccccccCCC
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL--TE---HCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~--~~---~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +...+|++|.+.+   +++|+++|++|+++||+||+|+...+.......  ..   ..+.+..+..|+++||||.++.+|
T Consensus       172 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G  251 (396)
T PRK09147        172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG  251 (396)
T ss_pred             EcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc
Confidence            6677899999997   788999999999999999999876553210111  10   011111134588999999998777


Q ss_pred             ---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC
Q 011567          323 ---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP  399 (483)
Q Consensus       323 ---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~  399 (483)
                         ||+++++++++.+.......  +.+.++....++.+++..-....+.++.++++.+.+.+.|++.  +.+..+..+.
T Consensus       252 lRiG~~~~~~~l~~~~~~~~~~~--~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~  327 (396)
T PRK09147        252 LRSGFVAGDAALLKKFLLYRTYH--GCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGF  327 (396)
T ss_pred             ceeeeecCCHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeE
Confidence               99999999988775432211  2234555555555555321111345667777777787777663  3443345677


Q ss_pred             EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---CCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---CRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       400 i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++++.++.       +   ..++++.+++++||.+.++.......   ....+.+||++..  +++++++++++|++++.
T Consensus       328 f~~~~~~~-------~---~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        328 YLWAKVPG-------D---DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--PLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEEEECCC-------C---HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHhc
Confidence            88888741       1   13566776766799999875433210   0112459999874  68899999999988763

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.92  E-value=4.4e-22  Score=202.87  Aligned_cols=338  Identities=17%  Similarity=0.182  Sum_probs=214.7

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCCEEEecccHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSILYSYGLS  180 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~~i~~~sG~~  180 (483)
                      |..++||..+.. .+...+.+.+++.+..... .       .|+...-..++++.++++++       .++.++.++|++
T Consensus        29 ~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~-~-------~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~   99 (397)
T PRK07568         29 GIKVYHLNIGQP-DIKTPEVFFEAIKNYDEEV-L-------AYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSE   99 (397)
T ss_pred             CCCEEEecCCCC-CCCCCHHHHHHHHHHhcCC-c-------CcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHH
Confidence            345788887643 2223467777766554321 1       12222234567777777762       234556677789


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++..++.++.++||.|++..++|..+...++..|.+++.++.+        |+++|++.+++          ++++|++.
T Consensus       100 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~----------~~~~v~i~  169 (397)
T PRK07568        100 AILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP----------KTKAILIS  169 (397)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc----------cceEEEEE
Confidence            9999999999999999998888777766677778888777642        23555554422          25666666


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---cee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      .+.+++|.+.+   +++|.++|++||+++|+||+|+...+.  +........... .+..+++.|+||.+|..|   ||+
T Consensus       170 ~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~--~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~  247 (397)
T PRK07568        170 NPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYD--GLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL  247 (397)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccC--CCCccChhhcCCCcCCEEEEecchhhccCCCcceEEE
Confidence            67888999887   788999999999999999999865432  221111111111 223588899999998655   888


Q ss_pred             ec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          326 TG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       326 ~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      ++ ++++++.+...... .++  .+++...++..+++..+ ...+.++.++++.+.+.+.|++++++.+..+..+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~-~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~  324 (397)
T PRK07568        248 ISKNKELIAAAMKLCQA-RLS--PPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA  324 (397)
T ss_pred             ecCCHHHHHHHHHHhhc-cCC--CCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEE
Confidence            87 46777765433221 222  24444444444554211 113466778888899999998876766554445556677


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHh-----CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKE-----DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~-----~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .++..      +   ..++++.++++     .||.+.++..........+..+|+++.  .++++++++++.|++++++.
T Consensus       325 ~l~~~------~---~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~~  393 (397)
T PRK07568        325 KLPVD------D---AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALEKY  393 (397)
T ss_pred             ecCCC------C---HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence            76421      1   22455555543     589998875332111111235999986  46899999999999999876


Q ss_pred             Hh
Q 011567          479 LR  480 (483)
Q Consensus       479 ~~  480 (483)
                      .+
T Consensus       394 ~~  395 (397)
T PRK07568        394 NK  395 (397)
T ss_pred             hc
Confidence            54

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.92  E-value=3.5e-22  Score=200.36  Aligned_cols=290  Identities=18%  Similarity=0.254  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHhhhCCCC---EE-EecccHHHHHhhhhhhccCCc-EEEEcCCchhH-HHhHhhhcCCeEEEecCC----
Q 011567          154 DVHLDCEARIAKFLGTPD---SI-LYSYGLSTMFSAIPCFCKKGD-LIVADEGVHWG-IQNGLYLSRSTVVYFKHN----  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~---~i-~~~sG~~a~~~ai~~~~~~gd-iI~~~~~~h~s-~~~g~~~s~~~v~~~~~~----  223 (483)
                      +...++++.+++++|.+.   .+ +.++|++++..++..+..++| +|+.+.++|+. ....+...|.+++.++.+    
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~  110 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEP  110 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCC
Confidence            678899999999999752   34 568999999999998877766 46666666655 344555667777766532    


Q ss_pred             -CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          224 -DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       224 -d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                       |++++++.+++..        ..++++...+.+.+|.+.|+++|.++|++||+++|+|+++++|..+         +.+
T Consensus       111 ~d~~~l~~~l~~~~--------~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~---------~~~  173 (355)
T TIGR03301       111 PDLNRIEEALAADP--------DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIP---------IDI  173 (355)
T ss_pred             CCHHHHHHHHHhCC--------CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcc---------cch
Confidence             6788888776521        2456666667777899999999999999999999999999876432         222


Q ss_pred             CCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcCCcee---------------ecCCCcHHHHHHHHHHHHHHhc
Q 011567          303 PVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSSGYV---------------FSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~~~~~---------------fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      ...++|++++|++|++ |+.| ||+++++++++.++....++.               +..+.++....++.++++.+.+
T Consensus       174 ~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~  253 (355)
T TIGR03301       174 EELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA  253 (355)
T ss_pred             hhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            2235689999999998 4555 899999998887653211111               1113456666777778887743


Q ss_pred             C---cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          366 N---PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       366 ~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      .   ++..++++++.+++++.|+++ |+++..+.  .++ ++++.++...      .....++.+.+ .++||.+.+...
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l-~~~gi~i~~~~~  325 (355)
T TIGR03301       254 EGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP------DFDFDDFYQEL-KERGFVIYPGKL  325 (355)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC------cchHHHHHHHH-HHCCEEEECCcc
Confidence            2   557788899999999999886 77754332  233 4556653210      01123566664 456999987532


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ..      .+.|||+++..+|++|++++++.|+++
T Consensus       326 ~~------~~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       326 TL------ADTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             cc------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            11      145999998889999999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.92  E-value=4.6e-22  Score=199.19  Aligned_cols=323  Identities=13%  Similarity=0.139  Sum_probs=214.7

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C--C-CC-EEEe-cccHHH
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G--T-PD-SILY-SYGLST  181 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g--~-e~-~i~~-~sG~~a  181 (483)
                      ++||++++. .+...|.+.+++.+.....  .      .|+...-..+|++.+++++    |  . ++ .++. ++++++
T Consensus         2 ~~~~~~g~p-~~~~~~~~~~~~~~~~~~~--~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~a   72 (350)
T TIGR03537         2 LFDFGTGDP-KEPTPPFIRKALIDAVPEV--S------QYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEA   72 (350)
T ss_pred             eEeccCCCC-CCCCCHHHHHHHHHHHhcc--C------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence            678888754 3434678888887765431  1      1211111345555555554    5  2 22 4555 455688


Q ss_pred             HHhhhhhhccCC---cEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          182 MFSAIPCFCKKG---DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       182 ~~~ai~~~~~~g---diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      +..++.+++++|   |.|+++.++|..+...+...|.+++.++.+       |++++++.+.+          .++++++
T Consensus        73 i~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----------~~~~i~i  142 (350)
T TIGR03537        73 IFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE----------ETKIVWI  142 (350)
T ss_pred             HHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh----------ccEEEEE
Confidence            888888898877   699999999999999999999999887642       56667666543          2566777


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      .+.+|++|.+.|   +++|+++|++||+++|+||+|+...++.....+   .... .+..++++|+||++|..|   ||+
T Consensus       143 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~~-~~~~i~~~s~SK~~g~~GlRiG~~  218 (350)
T TIGR03537       143 NYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSA---LEVG-IENVLAFHSLSKRSGMTGYRSGFV  218 (350)
T ss_pred             eCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCch---hhcC-cCCEEEEeecccccCCccccceee
Confidence            778899999998   899999999999999999999865444311111   1112 223688899999998666   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      ++++++.+.++.....+  +.+.++...+++.+++..-....+.+++++++.+.+.+.|++. |+.+..+..+.++++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~  295 (350)
T TIGR03537       219 AGDEKLISFLRKLRANF--GVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKV  295 (350)
T ss_pred             ecCHHHHHHHHHHHHhh--ccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEEC
Confidence            99998888776543332  3333445545554554311111346777888888898888876 77665444455677777


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      +...        ...++++.+++ +||.+.++......   .++.+|+++.  .++++++++++.+++
T Consensus       296 ~~~~--------~~~~l~~~L~~-~gv~v~~g~~f~~~---~~~~~Ri~~~--~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       296 PSGI--------DAKDYALRLLE-NGIVVAPGENFGSG---EEGYVRVALV--PTLEECEEALRLWER  349 (350)
T ss_pred             CCCC--------CHHHHHHHHHH-CCEEEcCchhhCCC---CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence            4321        12356776555 69999876543211   1245999874  578999999988864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.92  E-value=2.9e-22  Score=204.41  Aligned_cols=339  Identities=17%  Similarity=0.162  Sum_probs=225.9

Q ss_pred             CeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------CCEEEec
Q 011567          108 GKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------PDSILYS  176 (483)
Q Consensus       108 G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------e~~i~~~  176 (483)
                      |++++||..+++-   .+...+.+.+++.+.++.....      .|+...-..++++.++++++.        ++.++.+
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~  103 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN------GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTS  103 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEec
Confidence            6688999988542   3445688888888887642111      233333356788888888873        3456667


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++++++..++.+++.+||.|+++.+.|......+...|.+++.++..       |++++++.+..          .++++
T Consensus       104 G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v  173 (403)
T TIGR01265       104 GCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE----------KTVAI  173 (403)
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc----------CccEE
Confidence            77899999999999999999999999888777777778887766431       45666655422          24556


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..+++++|.+.+   +++|+++|++||+++|+||+|+...++.  ........+.+...-|+++||||.++.+|   |
T Consensus       174 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  251 (403)
T TIGR01265       174 VVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASFASIVPVLSLGGISKRWVVPGWRLG  251 (403)
T ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhhccCCcEEEEeecccccCCCcceEE
Confidence            66666788999987   8999999999999999999998765432  11111112222223578899999988666   9


Q ss_pred             eeecc--HH-----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-Hh-cCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          324 FCTGS--AR-----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LE-ENPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       324 ~i~~~--~~-----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      |+++.  ++     +.+.+..... ...  +.+++...++.++++. .+ ...+.+++++++.+.+.+.|+..+++.+..
T Consensus       252 ~~v~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  328 (403)
T TIGR01265       252 WIIIHDPHGIFRDTVLQGLKNLLQ-RIL--GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPK  328 (403)
T ss_pred             EEEEeCchhhhHHHHHHHHHHHhh-hhc--CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence            98763  22     3333322211 111  2345555555555542 11 113467778888888999998876777655


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..++++++.++.....   +.....+++..++++.||.+.++.....     +..+||++..  .++.+++++++|+++
T Consensus       329 p~~g~f~~~~~~~~~~~---~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----~~~iRis~~~--~~~~l~~~l~~l~~~  398 (403)
T TIGR01265       329 PEGAMYLMVKLELELFP---EIKDDVDFCEKLVREESVICLPGSAFGL-----PNWVRITITV--PESMLEEACSRIKEF  398 (403)
T ss_pred             CCceeEEEEeccccccC---CCCCHHHHHHHHHHhCCEEEeCccccCC-----CCeEEEEecC--CHHHHHHHHHHHHHH
Confidence            56788888887532100   0001235677767778999998765432     3459999874  588999999999888


Q ss_pred             HHH
Q 011567          475 SAV  477 (483)
Q Consensus       475 ~~~  477 (483)
                      +.+
T Consensus       399 ~~~  401 (403)
T TIGR01265       399 CER  401 (403)
T ss_pred             HHh
Confidence            754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3.3e-22  Score=200.52  Aligned_cols=318  Identities=16%  Similarity=0.145  Sum_probs=218.9

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      ++++|||.++ +.++  .+|.+.+++.+.+...-.       .|... -..+|++.+|++++.+  +.++.+++++++..
T Consensus        23 ~~~~i~l~~~~~~~~--~~~~~~~a~~~~~~~~~~-------~y~~~-~~~~lr~aia~~~~~~~~~I~it~G~~~al~~   92 (353)
T PRK05387         23 LAKLIKLNTNENPYP--PSPKVLEAIRAALGDDLR-------LYPDP-NADALRQAIAAYYGLDPEQVFVGNGSDEVLAH   92 (353)
T ss_pred             ccceeeccCCCCCCC--CCHHHHHHHHHHhhhhhh-------cCCCC-cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHH
Confidence            4578999998 4443  357889998877664111       12222 2368999999999853  44555666788999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++++++++||.|+++.++|..+....+..|.+++.++..     |+++++   +.           +++|++...++++|
T Consensus        93 ~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~---~~-----------~~~v~~~~P~NPtG  158 (353)
T PRK05387         93 AFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYL---RP-----------NGGIIFPNPNAPTG  158 (353)
T ss_pred             HHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHH---hc-----------CCEEEEeCCCCCCC
Confidence            999999999999999999987777778888888777643     344432   11           34566666789999


Q ss_pred             CccChHHHHHHHHHc-CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          260 QIAPLDELIRLKEKY-RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~-~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      .+.|.+++.++++++ ++++|+||+|..  ++.  .......+.  .+.+++++||||++|..|   ||+++++++++.+
T Consensus       159 ~~~~~~~~~~l~~~~~~~~livDe~y~~--~~~--~~~~~~~~~--~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l  232 (353)
T PRK05387        159 IALPLAEIERILAANPDSVVVIDEAYVD--FGG--ESAIPLIDR--YPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEAL  232 (353)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCcccc--cCC--cchHHHHhh--CCCEEEEEehhHhhcchhhhceeeecCHHHHHHH
Confidence            999999999999887 999999999964  221  111111111  233789999999998777   9999999998887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....+ .+.+.++....++.++++..+..++.+++++++.+.+.+.|++. |+.+. ++.++++++.++..      +
T Consensus       233 ~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------~  303 (353)
T PRK05387        233 NRVKNSF-NSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH------D  303 (353)
T ss_pred             HHhhccC-CCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC------C
Confidence            6543222 12234555555555566422222356778888899999999886 77765 34677777765321      1


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                         ..++++.+. ++||.+.....+.     .+..+|+++.   +++++++++++|++++.
T Consensus       304 ---~~~~~~~l~-~~gi~v~~~~~~~-----~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        304 ---AAELAAKLR-ERGIIVRHFNKPR-----IDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             ---HHHHHHHHH-HCCEEEEECCCCC-----CCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence               235666654 5699997432211     1245999985   78999999999998754

>PRK07550 hypothetical protein; Provisional

Probab=99.92  E-value=8.6e-22  Score=199.91  Aligned_cols=338  Identities=14%  Similarity=0.134  Sum_probs=218.5

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEe-cccHHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILY-SYGLSTMF  183 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~-~sG~~a~~  183 (483)
                      |+..+||.+++. .+...+.+.+++.+.+......  ......|..++...+++.+.+..|.   ++.+++ +++++++.
T Consensus        28 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~  104 (386)
T PRK07550         28 DGPLIDLSQAVP-GYPPPPELLRALAEAAADPAAH--LYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW  104 (386)
T ss_pred             CCCeEEeCCCCC-CCCCCHHHHHHHHHHHhCcCCc--CCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence            456799998853 2334677888877776431111  1111234444455555555544442   244555 55568888


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      .++.+++++||.|+++.+.|......++..|.+++.++.+       |.+++++.+++          .+++|++..+.+
T Consensus       105 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~----------~~~~v~~~~P~N  174 (386)
T PRK07550        105 AAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP----------RTRAIALVTPNN  174 (386)
T ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc----------cCcEEEEeCCCC
Confidence            8999999999999999999988887888889988877652       56667776643          134444445678


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC-CCCceeEEEccccccccCCC---ceeeccH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV-PVDKIDIVTAAMGHALATEG---GFCTGSA  329 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v-~~~~~Di~~~s~~K~lg~~G---G~i~~~~  329 (483)
                      ++|.+.+   +++|+++|++||+++|+||+|+....+. +.. ...+.. ...+..++++|+||++|..|   ||+++++
T Consensus       175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~-~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~  252 (386)
T PRK07550        175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGG-GAP-HDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP  252 (386)
T ss_pred             CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCC-cchhhCCCccccEEEEecchhhccCcccceEeeecCH
Confidence            8999887   7899999999999999999998654321 111 111111 11233577899999998555   9999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      ++++.++........+  .+.....++..+++.+++. .+.++.++++.+.+.+.|.+..++.+. +..+.++++.+...
T Consensus       253 ~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~  329 (386)
T PRK07550        253 ARIAEIEKFMDTVAIC--APRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFP  329 (386)
T ss_pred             HHHHHHHHHHhhcccC--CCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCC
Confidence            8887776543332222  2444444444555433221 245677888888899999876566554 33566677766431


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      .       ....+++..+++++||.+.++......   ....+||+++. .++++++++++.|+++
T Consensus       330 ~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        330 D-------RPSREVARRLAKEAGILCLPGTMFGPG---QEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             C-------CCHHHHHHHHHHhcCEEEeCchhhCCC---CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            1       013357777777779999987543210   12359999953 5799999999999865

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.92  E-value=6.4e-22  Score=203.11  Aligned_cols=353  Identities=17%  Similarity=0.185  Sum_probs=231.8

Q ss_pred             CCeeEEEeecCCC-CCCCCCh---HHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHH
Q 011567          107 SGKEVVNFASANY-LGLIGHE---KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~-lG~~~~p---~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~  182 (483)
                      .|..++++..+.. ..+..++   .+.++..+++.....       .|+...-..+|+++++++++.+.++++++|++|+
T Consensus        34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~-------~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~  106 (460)
T PRK13238         34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDE-------AYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAE  106 (460)
T ss_pred             cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCc-------ccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHH
Confidence            4667888888754 3554433   477888877764212       2333444688999999999999999999999999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---------------CCHHHHHHHHHHhhhhhhhccCccE
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---------------NDMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---------------~d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      ..++.++.++|| |+...+.+.++...+.+.|.+++.++.               -|+++|++.+.+...      .+++
T Consensus       107 ~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~------~~tk  179 (460)
T PRK13238        107 QILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA------ENVP  179 (460)
T ss_pred             HHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC------Ccee
Confidence            999999999999 777777666666777888887776543               367788888765321      2478


Q ss_pred             EEEEecccCCCC-CccC---hHHHHHHHHHcCcEEEEeCccccc-c-ccC------CCCccccccCCCCCceeEEEcccc
Q 011567          248 YIVVEAVYQNSG-QIAP---LDELIRLKEKYRFRVFLDESNSFG-V-LGR------SGRGLTEHCGVPVDKIDIVTAAMG  315 (483)
Q Consensus       248 ~iv~e~v~~~~G-~i~~---L~~l~~l~~k~~~~li~DEa~s~g-~-lg~------~G~g~~~~~~v~~~~~Di~~~s~~  315 (483)
                      +|+++.+.|++| .+.+   |++|+++|++||+++|.|+++..+ . +..      .+..+.+..-..-.-.|+++.|..
T Consensus       180 ~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~  259 (460)
T PRK13238        180 FIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAK  259 (460)
T ss_pred             EEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecc
Confidence            888888888876 6666   689999999999999999988542 1 111      111111100000012378888888


Q ss_pred             ccc-cCCCceeecc-HHHHHHHHhcC---Cce-eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC
Q 011567          316 HAL-ATEGGFCTGS-ARVVDHQRLSS---SGY-VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       316 K~l-g~~GG~i~~~-~~~~~~~~~~~---~~~-~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      |.+ +..||+++++ +++.+.++...   .++ +|++ +++...+|+..+++...+. +..+...++.++|.+.|++. |
T Consensus       260 K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g-~~~~~~~Ala~~l~e~~~~-~~~~~~~~~~~~l~~~L~~~-G  336 (460)
T PRK13238        260 KDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGG-LAGRDMEALAVGLYEGMDE-DYLAYRIGQVEYLGEGLEEA-G  336 (460)
T ss_pred             cCCCCcceeEEEcChHHHHHHhhhcccccCCcccccC-cHHHHHHHHHhhHHHhhCh-HHHHHHHHHHHHHHHHHHHC-C
Confidence            865 4568999887 57877776542   334 3332 3333233333344432222 34555555779999999886 9


Q ss_pred             ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC--------CCCceEEEccC-CCC
Q 011567          390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR--------LPVGIRLFVSA-AHS  460 (483)
Q Consensus       390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~--------~~~~lRi~~~~-~~t  460 (483)
                      +++..+.++..+++.+..-............+++.+++++.||.+.+......++..        ....+|++++- ..|
T Consensus       337 ~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~  416 (460)
T PRK13238        337 VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYT  416 (460)
T ss_pred             CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCC
Confidence            999877777777777643211000001113568888898999999775432222110        12459998874 459


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISA  476 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~  476 (483)
                      ++++|.++++|+++.+
T Consensus       417 ~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        417 QSHMDYVAEALKAVKE  432 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>PRK09265 aminotransferase AlaT; Validated

Probab=99.92  E-value=5.8e-22  Score=202.28  Aligned_cols=340  Identities=16%  Similarity=0.179  Sum_probs=215.5

Q ss_pred             CCeeEEEeecCC--CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh------CC-CCEEEecc
Q 011567          107 SGKEVVNFASAN--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL------GT-PDSILYSY  177 (483)
Q Consensus       107 ~G~~~id~~s~~--~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~------g~-e~~i~~~s  177 (483)
                      .|+.++||..+|  .+++...+++.+++.+.+... .       .|+...-..+|++.+|+++      +. ++.+++++
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~-~-------~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~  102 (404)
T PRK09265         31 EGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA-Q-------GYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGN  102 (404)
T ss_pred             cCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC-C-------CCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeC
Confidence            466889998864  456656788888888766531 1       1222222356788888876      32 23455544


Q ss_pred             c-HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          178 G-LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       178 G-~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      | ++++..++++++++||.|++..+.|..+...+...|.+++.++.+       |++++++.+..          ++++|
T Consensus       103 G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v  172 (404)
T PRK09265        103 GVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP----------RTKAI  172 (404)
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc----------cceEE
Confidence            4 577888899999999999999999988888887778777665421       45666665432          24566


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..++|++|.+.+   +++|+++|++||+++|+||+|+...+..  ..........++..-++++||||++|.+|   |
T Consensus       173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  250 (404)
T PRK09265        173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDG--AVHISIASLAPDLLCVTFNGLSKAYRVAGFRVG  250 (404)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCC--CCcCCHHHcCCCceEEEEecchhhccCcccceE
Confidence            65566889999999   8999999999999999999998654432  11111112222323577899999998766   9


Q ss_pred             eeec--cHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHhhccCCCceeec
Q 011567          324 FCTG--SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL---ITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       324 ~i~~--~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~---~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      |++.  +++    +++.+.... ...+  ..+.....++.+++...+...+.   .+++.++.+.+.+.|++++++.+..
T Consensus       251 ~~v~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~  327 (404)
T PRK09265        251 WMVLSGPKKHAKGYIEGLDMLA-SMRL--CANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVK  327 (404)
T ss_pred             EEEEeCchHHHHHHHHHHHHHh-cccc--CCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence            9874  443    333332211 1111  22444444455555311110111   2356677788888888776777665


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..+.++++.++........+    .+.+.+++.+.||.+.++......   .+..+|+++.  .+++++++++++|+++
T Consensus       328 p~~g~~l~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~pg~~F~~~---~~~~~Ri~~~--~~~e~l~~~l~rl~~~  398 (404)
T PRK09265        328 PKGALYAFPKLDPKVYPIHDD----EQFVLDLLLQEKVLLVQGTGFNWP---EPDHFRIVTL--PRVDDLEEAIGRIGRF  398 (404)
T ss_pred             CCcceEEEEEecccccCCCCH----HHHHHHHHHhCCEEEECchhhCCC---CCCeEEEEeC--CCHHHHHHHHHHHHHH
Confidence            556778888875321000011    122334566679999887543210   1235999984  6899999999999988


Q ss_pred             HHHH
Q 011567          475 SAVV  478 (483)
Q Consensus       475 ~~~~  478 (483)
                      ++..
T Consensus       399 l~~~  402 (404)
T PRK09265        399 LSGY  402 (404)
T ss_pred             HHHh
Confidence            8653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.91  E-value=1e-21  Score=199.17  Aligned_cols=332  Identities=15%  Similarity=0.119  Sum_probs=213.3

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHH---HHHhhhCC--CC-EEEecccHHHHHh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEA---RIAKFLGT--PD-SILYSYGLSTMFS  184 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~---~La~~~g~--e~-~i~~~sG~~a~~~  184 (483)
                      |+|-++..+    .++.+.+++.+.++.+..... ....|+. .....+++   .+++.++.  ++ .++.+++++++..
T Consensus         2 yld~aa~~~----~~~~v~~~~~~~~~~~~~n~~-~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~   75 (382)
T TIGR03403         2 YLDNNATTM----LDPKVKELMDPFFCDIYGNPN-SLHQFGT-ATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW   75 (382)
T ss_pred             cccCcCCCC----CCHHHHHHHHHHHHhcCcCCc-cccHHHH-HHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence            455554422    567899999998887433222 2223332 22333444   44444553  34 4455677788888


Q ss_pred             hhhhhc-----cC-CcEEEEcCCchhHHHhH---hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          185 AIPCFC-----KK-GDLIVADEGVHWGIQNG---LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       185 ai~~~~-----~~-gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +++++.     ++ ++.|++....|.++...   ++..|.+++.++.+     |++++++.+..          .+++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~----------~t~lv~  145 (382)
T TIGR03403        76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE----------KTALVS  145 (382)
T ss_pred             HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc----------CCeEEE
Confidence            887652     34 56788888888776544   34567888877654     56666665532          267888


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~  329 (483)
                      +..+.+++|.+.|+++|.++|++||+++++|++++.|.+.         .++....+|+++.|.+|.+|+.| |++..++
T Consensus       146 ~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~  216 (382)
T TIGR03403       146 VMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIP---------VDVQKAGVDFLSFSAHKFHGPKGVGGLYIRK  216 (382)
T ss_pred             EEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCc---------cCccccCCCEEEEcchhhCCCCceEEEEECC
Confidence            8889999999999999999999999999999999865321         22322456999999999888765 6654443


Q ss_pred             HHH-HHHHh-c--CCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCC--C-CCEE
Q 011567          330 RVV-DHQRL-S--SSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNP--E-SPIV  401 (483)
Q Consensus       330 ~~~-~~~~~-~--~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~-~~i~  401 (483)
                      ... ..... .  ...+ ..++.+.....++.++++...+. +...+++++..+++.+.|++++++.+.++.  . .+++
T Consensus       217 ~~~~~p~~~g~~~~~~~-~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~  295 (382)
T TIGR03403       217 GVELTPLFHGGEHMGGR-RSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTI  295 (382)
T ss_pred             CCCCCCcccCCCCCCCc-ccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEE
Confidence            320 01000 0  0011 12345555665666777766542 456788888999999999888888887543  2 3466


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---c---------cc--CCCCCceEEEccCCCCHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---L---------DK--CRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---~---------~~--~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      .+.++..      +   ...+... |.++||.++.+..+.   +         ..  ....+.||++++..+|++|||++
T Consensus       296 ~~~~~~~------~---~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~  365 (382)
T TIGR03403       296 LISIKGV------E---GEAMLWD-LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYT  365 (382)
T ss_pred             EEEeCCC------C---HHHHHHh-hccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHH
Confidence            6666421      1   2244554 556799998643221   1         00  00013499999999999999999


Q ss_pred             HHHHHHHHHHH
Q 011567          468 CESLKRISAVV  478 (483)
Q Consensus       468 ~~~l~~~~~~~  478 (483)
                      +++|+++++++
T Consensus       366 ~~~l~~~~~~~  376 (382)
T TIGR03403       366 IEVFKKAVQRL  376 (382)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.91  E-value=6.6e-22  Score=198.23  Aligned_cols=303  Identities=17%  Similarity=0.282  Sum_probs=211.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchhHHHh
Q 011567          130 ESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGIQN  208 (483)
Q Consensus       130 ~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~s~~~  208 (483)
                      +++.+.+.+.         .++..+...++++.+++++|.++++++++|++|+..++.++ .++||.|+++...|.++..
T Consensus         3 ~~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~   73 (352)
T cd00616           3 EAVEEVLDSG---------WLTLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN   73 (352)
T ss_pred             HHHHHHHHcC---------CccCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH
Confidence            4555666552         22344678999999999999999999999999999999988 5899999999999999998


Q ss_pred             HhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeC
Q 011567          209 GLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       209 g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DE  282 (483)
                      .+...|.+++.++.+      |++++++.++   +       ++++|++.+   .+|.+.|+++|+++|++||+++|+|+
T Consensus        74 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~---~-------~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~  140 (352)
T cd00616          74 AILLLGATPVFVDIDPDTYNIDPELIEAAIT---P-------RTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDA  140 (352)
T ss_pred             HHHHcCCeEEEEecCCCcCCcCHHHHHHhcC---c-------CCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEEC
Confidence            888889888876543      5677766552   1       256666654   46889999999999999999999999


Q ss_pred             ccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHh---cCCc----------eeec
Q 011567          283 SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRL---SSSG----------YVFS  345 (483)
Q Consensus       283 a~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~---~~~~----------~~fs  345 (483)
                      +|++|.... ++    ..+..   .|+.+.|++  |+++ +.||+++.+ +++.+.++.   .+..          ..+.
T Consensus       141 a~~~g~~~~-~~----~~~~~---~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (352)
T cd00616         141 AQALGATYK-GR----KVGTF---GDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYN  212 (352)
T ss_pred             CCCCCCeEC-CE----EcccC---cceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeec
Confidence            999875432 11    11211   266666766  9996 456777664 566655432   1111          1123


Q ss_pred             CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC-----CCEEEEEecCCCCCchhhHHHHH
Q 011567          346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-----SPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-----~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      ..++++.++.+...++.+   ++..++.+++.+++++.|.+++|+++.....     .+++.+.+.+..+      ....
T Consensus       213 ~~~~~~~aa~~~~~l~~~---~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  283 (352)
T cd00616         213 YRLSEIQAAIGLAQLEKL---DEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAG------ESRD  283 (352)
T ss_pred             cCcCHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCC------CCHH
Confidence            356777777777666554   3477888999999999999988887764322     3466776643101      1123


Q ss_pred             HHHHHHHHhCCEEEEeecccccccC-----------CCC-------CceEEEccCCCCHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKC-----------RLP-------VGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~-----------~~~-------~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ++.+. |+++||.+.....+...+.           ..|       ..||++++..+|++||++++++|+
T Consensus       284 ~v~~~-L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         284 ELIEA-LKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHHH-HHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            56665 5566998765544332211           012       359999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=8.4e-22  Score=199.18  Aligned_cols=319  Identities=17%  Similarity=0.142  Sum_probs=219.3

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEeccc-HHHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYG-LSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG-~~a~~  183 (483)
                      .++++|||..| |.++.  +|.+.+++.+. ... .       .|.. +...+|++.|++++|.+ +.|++++| ++++.
T Consensus        50 ~~~~~i~l~~n~~p~~~--~~~v~~a~~~~-~~~-~-------~Yp~-~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~  117 (380)
T PLN03026         50 KPEDIVKLDANENPYGP--PPEVLEALGNM-KFP-Y-------VYPD-PESRRLRAALAEDSGLESENILVGCGADELID  117 (380)
T ss_pred             CccceEEccCCCCCCCC--CHHHHHHHHhh-Hhh-c-------cCCC-CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHH
Confidence            35688999998 66655  47788776542 110 0       1222 12578999999999854 45656555 57888


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      .++.++.++||.|++..+.+..+....+..|.+++.++.+     |+++|++.+..  .       ++++|++..++|++
T Consensus       118 ~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~--~-------~~~~v~l~~P~NPT  188 (380)
T PLN03026        118 LLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET--H-------KPKLLFLTSPNNPD  188 (380)
T ss_pred             HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc--c-------CCcEEEEeCCCCCC
Confidence            8888999999999999998877777777888888877643     45666655522  1       25677777889999


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.|.+++.++++.. +++|+||+|......  +.. ...  +...+..++++||||++|..|   ||+++++++++.+
T Consensus       189 G~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~--~~~-~~~--~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l  262 (380)
T PLN03026        189 GSIISDDDLLKILELP-ILVVLDEAYIEFSTQ--ESR-MKW--VKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYL  262 (380)
T ss_pred             CCCCCHHHHHHHHhcC-CEEEEECcchhhcCC--cch-HHH--HHhCCCEEEEecchHhhcCccccceeeecCHHHHHHH
Confidence            9999999999999865 999999999754321  111 111  111234688999999999878   9999999999887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....+    +.+.....++.++|+..+...+.++.++++.+++.+.|+++.++.+. +..++++++.++...     +
T Consensus       263 ~~~~~~~----~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~~~f~~~~~~~~~-----~  332 (380)
T PLN03026        263 WRAKQPY----NVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEPY-PSDANFILCRVTSGR-----D  332 (380)
T ss_pred             HHhcCCC----CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEC-CCCCeEEEEECCCCC-----C
Confidence            6554433    23455555566666422212346777888888999999887445543 457888888774311     1


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         ..++.+.++ ++||.+++...+.     .++.+||++.   +.++++++.++|+++
T Consensus       333 ---~~~~~~~l~-~~gI~v~~~~~~~-----~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        333 ---AKKLKEDLA-KMGVMVRHYNSKE-----LKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             ---HHHHHHHHH-HCCeEEEECCCCC-----CCCEEEEecC---CHHHHHHHHHHHHHh
Confidence               235677665 5699998643211     1345999985   788999999988753

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.91  E-value=5.5e-22  Score=199.72  Aligned_cols=323  Identities=17%  Similarity=0.175  Sum_probs=208.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEeccc-HHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYG-LST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG-~~a  181 (483)
                      ++..++||..+++... .++.+.+++.+.....  +.+   ...|..++.+.+++.+.+..|.    ++.|+.++| .++
T Consensus        25 ~~~~~i~l~~~~p~~~-~~~~~~~~~~~~~~~~--~Y~---~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~   98 (364)
T PRK07865         25 HPDGIVDLSVGTPVDP-VPPVIQEALAAAADAP--GYP---TTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKEL   98 (364)
T ss_pred             cCCCEEEcCCCCCCCC-CCHHHHHHHHHHHhhC--CCC---CccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHH
Confidence            3456799998865432 3577788877654321  111   1234444555555555544342    345666555 577


Q ss_pred             HHhhhhhh-ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          182 MFSAIPCF-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       182 ~~~ai~~~-~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      +..+..++ +++||.|+++.++|..+...+...|.+++.++  +.++++.      .       .+++|++++++|++|.
T Consensus        99 i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~--~~~~l~~------~-------~~~~v~~~~p~NPtG~  163 (364)
T PRK07865         99 VAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD--SLTELGP------Q-------RPALIWLNSPSNPTGR  163 (364)
T ss_pred             HHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecC--ChhhCCc------c-------cceEEEEcCCCCCCCc
Confidence            77766777 69999999999999999888888899887764  3333321      1       2567777788999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccc----cCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          261 IAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH----CGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       261 i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~----~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      +.+   +++|+++|++||+++|+||+|....+.  +......    .+.. .+..++++||||++|..|   ||++++++
T Consensus       164 ~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~GlRiG~i~~~~~  240 (364)
T PRK07865        164 VLGVDHLRKVVAWARERGAVVASDECYLELGWD--AEPVSILDPRVCGGD-HTGLLAVHSLSKQSNLAGYRAGFVAGDPA  240 (364)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEecchhhhccC--CCCCccccccccCCc-cceEEEEeechhccCCCceeeEEEecCHH
Confidence            887   688999999999999999999864432  2221110    0111 234688999999997666   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      +++.++.......+  +.++....++.++++..+...+.++.++++.+.+.+.|++. |+.+..+..+.++++.+..   
T Consensus       241 ~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~---  314 (364)
T PRK07865        241 LVAELLEVRKHAGM--MVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRGE---  314 (364)
T ss_pred             HHHHHHHHHHhcCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCCC---
Confidence            98887654322222  23455555555555432222346677788888899999875 7766544344455555421   


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                          +   ..++++. ++++||.+.++.+....   .+..+||+++.  +++++++++++|+
T Consensus       315 ----~---~~~~~~~-l~~~gv~v~pg~~f~~~---~~~~iRi~~~~--~~~~~~~~~~~l~  363 (364)
T PRK07865        315 ----D---CWDTVAW-LAERGILVAPGDFYGPA---GAQHVRVALTA--TDERIAAAVERLA  363 (364)
T ss_pred             ----C---HHHHHHH-HHHCCEEEeCccccCcC---CCCEEEEEecC--CHHHHHHHHHHhh
Confidence                1   1245554 45579999886543210   13459999874  6899999998875

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.91  E-value=5.2e-22  Score=201.95  Aligned_cols=333  Identities=16%  Similarity=0.149  Sum_probs=215.7

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CC--CEEEe-
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TP--DSILY-  175 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e--~~i~~-  175 (483)
                      .|++++||..+.. .+..++.+.+++.+.+... ...+.   ..|.    .+|++.+|+++    |    .+  +.++. 
T Consensus        26 ~~~~~i~l~~~~p-~~~~~~~~~~a~~~~~~~~-~~Y~~---~~G~----~~lr~aia~~~~~~~~~~~~~~~~~~i~it   96 (393)
T TIGR03538        26 ASKPPIALSIGEP-KHPTPAFVLEALRENLHGL-STYPT---TKGL----PELRQAIARWLERRFDLPTGVDPERHVLPV   96 (393)
T ss_pred             cCCCeEEecCCCC-CCCCCHHHHHHHHHHhhcc-CCCCC---CCCC----HHHHHHHHHHHHHhhCCcccCCCCceEEEC
Confidence            4678899998843 2334578888888766431 11111   2233    44555555554    3    22  34555 


Q ss_pred             cccHHHHHhhhhhhccCCcE--EEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCcc
Q 011567          176 SYGLSTMFSAIPCFCKKGDL--IVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~~~gdi--I~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +++.+++..++++++++||.  |+++.+++..+...+...|.+++.++..       |++++++.+.+          ++
T Consensus        97 ~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----------~~  166 (393)
T TIGR03538        97 NGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR----------RC  166 (393)
T ss_pred             CCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh----------cc
Confidence            55568888999999999984  8889999888777778888888877642       45666655532          25


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCc--cccc---cCCCCCceeEEEccccccc
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG--LTEH---CGVPVDKIDIVTAAMGHAL  318 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g--~~~~---~~v~~~~~Di~~~s~~K~l  318 (483)
                      ++|++...+|++|.+.+   +++|+++|++|++++|+||+|....+......  ....   .+....+..|+++|+||.+
T Consensus       167 k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  246 (393)
T TIGR03538       167 QLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS  246 (393)
T ss_pred             eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc
Confidence            66666677899999998   79999999999999999999986544311011  1111   1111123358899999998


Q ss_pred             cCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          319 ATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       319 g~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                      +.+|   ||+++++++++.+.......  +.+.++....++.+++..-+...+.++.++++.+.+.+.|++.  +.+..+
T Consensus       247 ~~~GlRvG~~i~~~~l~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p  322 (393)
T TIGR03538       247 NLPGLRSGFVAGDAEILKAFLRYRTYH--GCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--LDLELP  322 (393)
T ss_pred             CCcccceEEEecCHHHHHHHHHHHHhh--ccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--CcccCC
Confidence            8777   99999999888765432211  2233555555555555321111245666777788888888764  333345


Q ss_pred             CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---CCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---CRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ..+.++++.++.       +   ..++++.++++.||.+.++.......   ...+..+||++..  +++++++++++|+
T Consensus       323 ~gg~f~~~~~~~-------~---~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~~l~~~l~~l~  390 (393)
T TIGR03538       323 DAGFYLWPKVPG-------D---DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLEECVEAAERIR  390 (393)
T ss_pred             CeeEEEEEECCC-------C---HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHHHHHHHHHHHH
Confidence            567788888741       1   13567766776799999886532210   1112459999864  6899999999987


Q ss_pred             HH
Q 011567          473 RI  474 (483)
Q Consensus       473 ~~  474 (483)
                      +.
T Consensus       391 ~~  392 (393)
T TIGR03538       391 SF  392 (393)
T ss_pred             Hh
Confidence            64

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.91  E-value=1.1e-21  Score=200.37  Aligned_cols=345  Identities=12%  Similarity=0.106  Sum_probs=219.9

Q ss_pred             ECCeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEE
Q 011567          106 ISGKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSIL  174 (483)
Q Consensus       106 ~~G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~  174 (483)
                      .+|+.+|+|+-+++-   .+...|.+.+++.+.+++-...      .|+...-..+|++.+++++    |    .++.++
T Consensus        29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~i  102 (409)
T PLN00143         29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFN------SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYL  102 (409)
T ss_pred             CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEE
Confidence            457889999988653   3556678889998888752211      1221122345666666665    3    134445


Q ss_pred             ecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccE
Q 011567          175 YSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       175 ~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      .+++.+++..++.+++++||.|++..+++..+...+...|.+++.++.   +    |+++|++.++.   .      +..
T Consensus       103 t~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~------~~~  173 (409)
T PLN00143        103 TLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE---N------TIA  173 (409)
T ss_pred             ecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc---C------CEE
Confidence            566678999999999999999999999998888888888888877753   1    56677665432   1      234


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      ++++ ..+|++|.+.+   +++|+++|++|++++|+||+|...+++  ++-......+...+.-|+++||||.++.+|  
T Consensus       174 ~~~~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~--~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR  250 (409)
T PLN00143        174 MVII-NPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFG--SKPFVPMGLFASIVPVITLGSISKRWMIPGWG  250 (409)
T ss_pred             EEEE-CCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccC--CCCCcchhhhcccCcEEEEccchhhcCCCccc
Confidence            4544 45889999998   788999999999999999999876553  221111111222223588999999998776  


Q ss_pred             -ceeecc--HHH------HHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567          323 -GFCTGS--ARV------VDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       323 -G~i~~~--~~~------~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                       ||++++  +.+      ++.+........++   +.....++.++++.-  ...++.++.++++.+.+.+.|.++++..
T Consensus       251 vG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  327 (409)
T PLN00143        251 LGWLVTCDPSGLLQICEIADSIKKALNPAPFP---PTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIM  327 (409)
T ss_pred             eEEEEeeCchhhhhhHHHHHHHHHHHhccCCC---CchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence             999873  333      23232221111221   334444444455310  1113467777788888888888764433


Q ss_pred             ee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          392 IA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       392 i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      .. .+..+.++++.++.....   ......+++..+++++||.+.++.....     ++.+||++.  .+++++++++++
T Consensus       328 ~~~~p~gg~f~w~~l~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~~iRi~~~--~~~~~l~~al~r  397 (409)
T PLN00143        328 CPQKAEGAFFALVKLNLLLLE---DIEDDMEFCLKLAKEESLIILPGVTVGL-----KNWLRITFA--VEQSSLEDGLGR  397 (409)
T ss_pred             CCCCCCeeEEEEEecchhhcC---CCCCHHHHHHHHHHhCCEEEeCccccCC-----CCeEEEEEc--CCHHHHHHHHHH
Confidence            22 233577888887421000   0001234555566677999998754321     355999997  468999999999


Q ss_pred             HHHHHHHHHhc
Q 011567          471 LKRISAVVLRD  481 (483)
Q Consensus       471 l~~~~~~~~~~  481 (483)
                      |++++++..++
T Consensus       398 l~~~l~~~~~~  408 (409)
T PLN00143        398 LKSFCGRHAKK  408 (409)
T ss_pred             HHHHHHHhccC
Confidence            99998776543

>PRK07337 aminotransferase; Validated

Probab=99.91  E-value=5e-22  Score=201.76  Aligned_cols=335  Identities=12%  Similarity=0.111  Sum_probs=217.6

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecccH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYGL  179 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG~  179 (483)
                      |..+++|..++. .+...|.+.+++.+.++.....       |+......+|++.+|+++    |.    ++.+++++++
T Consensus        29 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~  100 (388)
T PRK07337         29 GRDIIHMGIGEP-DFTAPEPVVEAAARALRRGVTQ-------YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGAS  100 (388)
T ss_pred             CCCEEEeCCcCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcH
Confidence            345788887743 2324578888888877642111       222222455666666664    42    3556667778


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++..++.++.++||.|+++.++|......+...+.+++.++.+       |++++++.+..          ++++|++.
T Consensus       101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~l~  170 (388)
T PRK07337        101 AALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE----------RTRGVLLA  170 (388)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc----------cceEEEEE
Confidence            99988999999999999999999998888888888888777642       34555544422          25566667


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      .+++++|.+.+   +++|+++|++|++++|+||+|....+..  .. ....... + .-++++|+||.+|..|   ||++
T Consensus       171 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~-~~~~~~~-~-~vi~~~S~SK~~~~~G~RiG~~~  245 (388)
T PRK07337        171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA--AP-VSALSLG-D-DVITINSFSKYFNMTGWRLGWLV  245 (388)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CC-cChhhcc-C-CEEEEEechhhcCCchhheeeee
Confidence            77889999887   6888999999999999999997543322  11 1111222 1 1366789999998666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEE
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFL  403 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l  403 (483)
                      +++++++.++.....+..+  .++....++..+++.  .....+.++.++++.+.+.+.|++. ++.+ ..+..+.++++
T Consensus       246 ~~~~l~~~l~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~  322 (388)
T PRK07337        246 VPEALVGTFEKLAQNLFIC--ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYA  322 (388)
T ss_pred             cCHHHHHHHHHHHHHhccC--CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEE
Confidence            9999888776543332222  234444444444431  1112345677788888888999885 6654 23446778888


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .++.....   +.....+++..+++++||.+.++.....+  ..+..+|+++..  +++++++++++|.+++
T Consensus       323 ~~~~~~~~---~~~~~~~~~~~ll~~~gv~v~pg~~f~~~--~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        323 DCRGVAHP---AAGDSAALTQAMLHDAGVVLVPGRDFGPH--APRDYIRLSYAT--SMSRLEEAVARLGKLF  387 (388)
T ss_pred             ecccccCC---CCCCHHHHHHHHHHhCCEEEeCchhhCCC--CCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence            87531000   00012356777777789999887543321  112459999975  6899999999988764

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.91  E-value=3e-22  Score=203.07  Aligned_cols=213  Identities=17%  Similarity=0.227  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.++++++++|++|+..++.++.++||.|+++.+.|.++.    ..+...|.++..++..|+++++
T Consensus        64 p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~  143 (400)
T PRK06234         64 PTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVR  143 (400)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHH
Confidence            456899999999999999999999999999999999999999999988776644    3456788999999988988888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +.+..          ++++|++|.++|++|.+.|+++|.++|++|  |+++|+||+|+.+.++.   .    .+   ...
T Consensus       144 ~~i~~----------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~---~----l~---~g~  203 (400)
T PRK06234        144 NALKA----------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR---P----LQ---LGA  203 (400)
T ss_pred             HHhcc----------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC---c----hh---hCC
Confidence            87743          267999999999999999999999999997  99999999998765431   1    11   234


Q ss_pred             eEEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |++++|++|.+++.    ||++++++++++.++..+....++..++|..+..+...++.+   +...++..+++..+.+.
T Consensus       204 Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl---~~r~~~~~~na~~~a~~  280 (400)
T PRK06234        204 DVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL---QIRMEKHCKNAMKVAKF  280 (400)
T ss_pred             cEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH---HHHHHHHHHHHHHHHHH
Confidence            89999999999753    599999999888876543334456678899888887776554   34777788899999999


Q ss_pred             hccCCC
Q 011567          384 LSDIHG  389 (483)
Q Consensus       384 L~~~~~  389 (483)
                      |++.+.
T Consensus       281 L~~~~~  286 (400)
T PRK06234        281 LESHPA  286 (400)
T ss_pred             HHcCCC
Confidence            987653

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.91  E-value=3.1e-22  Score=206.00  Aligned_cols=327  Identities=15%  Similarity=0.125  Sum_probs=220.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC----CCCEE-EecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----TPDSI-LYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g----~e~~i-~~~sG~~a~~  183 (483)
                      ...+||++++...- ..|.+.+++.+.....        ..|+......+|++.++++++    .++.| +.+++.+++.
T Consensus        85 ~~~i~L~~g~p~~~-~~p~~~~~~~~~~~~~--------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~  155 (431)
T PRK15481         85 TPLHDLAGGNPDPQ-RLPDLSRYFARLSRTP--------RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIE  155 (431)
T ss_pred             chhhhhhcCCCChh-HhHHHHHHHHHhhhhh--------hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHH
Confidence            35677777643221 2355666665544321        123333334567788888865    23344 4456668899


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      .++.+++++||.|+++.++|..+...++..|.+++.++.+    |+++|++.++.   .      .+.++++...+|++|
T Consensus       156 ~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~---~------~k~i~~~p~p~NPTG  226 (431)
T PRK15481        156 RLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQ---G------ARAVILTPRAHNPTG  226 (431)
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhc---C------CCEEEECCCCCCCCC
Confidence            9999999999999999999999999999999998887653    56677666643   1      233444447888999


Q ss_pred             CccCh---HHHHHHHHHc-CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          260 QIAPL---DELIRLKEKY-RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       260 ~i~~L---~~l~~l~~k~-~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      .+.+.   ++|.++|++| ++++|+||+|+.....  +.  ....... .+..|+++||||++| +|   ||++++++++
T Consensus       227 ~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~--~~--~~~~~~~-~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~  300 (431)
T PRK15481        227 CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS--PY--HSVIPQT-TQRWALIRSVSKALG-PDLRLAFVASDSATS  300 (431)
T ss_pred             ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC--CC--CCCCcCC-CCCEEEEeeeccccC-CCceeEEEeCCHHHH
Confidence            99995   5999999999 9999999999865422  11  1111111 234688999999999 56   9999999998


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +.+........+  +.+.+...++.++|+.-.   ...+.++.++++.+.+.+.|++. ++.+..+..+.++++.++.. 
T Consensus       301 ~~~~~~~~~~~~--~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~~-  376 (431)
T PRK15481        301 ARLRLRLNSGTQ--WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDTD-  376 (431)
T ss_pred             HHHHHHHhcccc--CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCCC-
Confidence            887543322222  235666666666664211   11246777888888899999876 77664455777888887421 


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                               ..++++.++ ++||.+.++.......  ....+||++.. .++++++++++.|++++.
T Consensus       377 ---------~~~~~~~l~-~~gV~v~pg~~f~~~~--~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        377 ---------SQATALTLA-KSGWLVREGEAFGVSA--PSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             ---------HHHHHHHHH-HCCcEEecCCccccCC--CCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence                     224566554 5699999865432211  12359999865 579999999999998864

>PRK06855 aminotransferase; Validated

Probab=99.91  E-value=1.1e-21  Score=201.57  Aligned_cols=347  Identities=13%  Similarity=0.085  Sum_probs=214.3

Q ss_pred             CeeEEEeecCCC--CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecc
Q 011567          108 GKEVVNFASANY--LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSY  177 (483)
Q Consensus       108 G~~~id~~s~~~--lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~s  177 (483)
                      |++++++..+++  .++..++.+.+++.+.+++-..  .    .|+...-..+|++.+|+++    |.    ++.+++++
T Consensus        31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~--~----~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G  104 (433)
T PRK06855         31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKS--Y----GYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNG  104 (433)
T ss_pred             cccccccccCCCcccCCCCCHHHHHHHHHHhhcCCC--C----CCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCc
Confidence            566788876654  3666677888888887754211  0    1222222345556666654    42    23444455


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh-hhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL-YLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~-~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      +.+++..++. ++.+||.|++++++|..+.... ...+.+++.++.       -|+++|++.++...        +++++
T Consensus       105 ~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~--------~~~~i  175 (433)
T PRK06855        105 LGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP--------SIAGI  175 (433)
T ss_pred             HHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC--------CceEE
Confidence            5688877774 7889999999999887654332 234666655532       26788887775321        13555


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++...+|++|.+.+   +++|+++|++||+++|.||+|+...+..  ........+.++...|+++||||.++.+|   |
T Consensus       176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG  253 (433)
T PRK06855        176 LLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG--KKTVPLSEVIGDVPGIALKGISKELPWPGSRCG  253 (433)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCCHHHHcCcCCeEEEecCccccCCCcceEE
Confidence            55566899999998   7888999999999999999998655432  21111122222323588999999998666   9


Q ss_pred             eeecc-----H---HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--h-cCcHHHHHHHHHHHHHHHhhccCCCcee
Q 011567          324 FCTGS-----A---RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--E-ENPDLITKLKKNTAILRTGLSDIHGLSI  392 (483)
Q Consensus       324 ~i~~~-----~---~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i  392 (483)
                      |++++     +   .+++.+..... ...  +.+.+...++.++++.-  + ...+.++.++++.+.+.+.|++++++.+
T Consensus       254 ~ii~p~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~  330 (433)
T PRK06855        254 WIEVYNADKDEVFKKYINSILNAKM-IEV--CSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV  330 (433)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhhc-ccc--CCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec
Confidence            99862     2   23333322111 111  22444555555555321  1 1134567778888889899987767666


Q ss_pred             ecCCCCCEEEEEecCCCC-------Cc--hhhHH----------HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEE
Q 011567          393 ASNPESPIVFLILEKSTG-------SM--KNDLQ----------LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL  453 (483)
Q Consensus       393 ~~~~~~~i~~l~l~~~~~-------~~--~~~~~----------~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi  453 (483)
                      ..+..+.++++.++....       ..  +....          ...+++..++++.||.+.++.....    ...++||
T Consensus       331 ~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~----~~~~~Rl  406 (433)
T PRK06855        331 NRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT----ELNGFRV  406 (433)
T ss_pred             cCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC----CCCceEE
Confidence            555456778887754210       00  00000          1235566667778999998864421    1245999


Q ss_pred             EccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          454 FVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       454 ~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ++.. .++++|+++++.|++++++.+
T Consensus       407 s~~~-~~~~~i~~~~~~l~~~~~~~~  431 (433)
T PRK06855        407 TLLE-RDEEKFEWIYQTLAEKIEEYL  431 (433)
T ss_pred             EECC-CcHHHHHHHHHHHHHHHHHHh
Confidence            9976 589999999999999998754

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.91  E-value=2.1e-21  Score=194.70  Aligned_cols=321  Identities=12%  Similarity=0.182  Sum_probs=214.8

Q ss_pred             eeEEEeecC-CCCCCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          109 KEVVNFASA-NYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      +++||.+.. ..+|-+ .++++.+++.+.++.|          ++..+...++++.+++++|.++++++++|++|+..++
T Consensus         8 ~~~ina~g~~t~~g~s~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al   77 (363)
T TIGR01437         8 KKVINASGKMTILGVSTVSDEVADAQKRGAQNY----------FEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSV   77 (363)
T ss_pred             ceEEECCcEeecCCCCCCCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHH
Confidence            467776664 566654 4789999999887764          3355788999999999999999999999999999999


Q ss_pred             hhhccCCc---------------EEEEcCCchhH----HHhHhhhcCCeEEEecC---CCHHHHHHHHHHhhhhhhhccC
Q 011567          187 PCFCKKGD---------------LIVADEGVHWG----IQNGLYLSRSTVVYFKH---NDMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       187 ~~~~~~gd---------------iI~~~~~~h~s----~~~g~~~s~~~v~~~~~---~d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      .++.++||               .|+++.+.+..    ....+.++|.++++++.   -|++++++.+.+.         
T Consensus        78 ~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~---------  148 (363)
T TIGR01437        78 AAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEK---------  148 (363)
T ss_pred             HHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChh---------
Confidence            99998887               66666533322    24566778888887753   3677888777431         


Q ss_pred             ccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCc
Q 011567          245 LRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGG  323 (483)
Q Consensus       245 ~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG  323 (483)
                      ++++++++...+++|.+.|+++|.++|++||+++|+|++|+.-.     ..... +     +.|++++|.+|+++ +.+|
T Consensus       149 t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-----~~~~~-~-----g~D~~~~S~~K~l~gp~~G  217 (363)
T TIGR01437       149 TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-----QKYYR-L-----GADLVIYSGAKAIEGPTSG  217 (363)
T ss_pred             ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-----HHHHH-c-----CCCEEEEeCCcccCCCceE
Confidence            23344455555677999999999999999999999999997311     10111 1     24899999999885 5689


Q ss_pred             eeeccHHHHHHHHhcCCc--eeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCC--
Q 011567          324 FCTGSARVVDHQRLSSSG--YVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPES--  398 (483)
Q Consensus       324 ~i~~~~~~~~~~~~~~~~--~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~--  398 (483)
                      +++++++.++..+....+  ..+..  .....++..++++.+.+ ..+..+...++.+.+++.|.+++|+.+......  
T Consensus       218 ~l~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~  295 (363)
T TIGR01437       218 LVLGKKKYIEWVKLQSKGIGRAMKV--GKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAG  295 (363)
T ss_pred             EEEEcHHHHHHHHhccCCCcceecc--CHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999988888766432222  11111  11223444456666653 344566666778889999999989877632111  


Q ss_pred             ---CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCC--EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          399 ---PIVFLILEKSTGSMKNDLQLLEDIADWALKEDG--VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       399 ---~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~G--v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                         +...+.+.....     .....++.+. |+++|  |.+++...+       ...+|+.+.. .+++|++.++++|++
T Consensus       296 ~~~~~~~v~~~~~~~-----g~~~~~l~~~-L~~~~~~I~~r~~~~~-------~~~~~l~~~~-~~~~e~~~~~~~l~~  361 (363)
T TIGR01437       296 RDIARAEIRFDESEL-----GMTAADVVQA-LRQGEPAIYTRGYKAN-------EGIIEIDPRS-VTGGQLDIIVERIRE  361 (363)
T ss_pred             CcCceEEEEEeccCC-----CCCHHHHHHH-HhcCCCCEEEeeeeec-------CCeEEEEeec-CCHHHHHHHHHHHHH
Confidence               122233322100     0112356664 55556  666553211       2458998875 679999999999987


Q ss_pred             HH
Q 011567          474 IS  475 (483)
Q Consensus       474 ~~  475 (483)
                      ++
T Consensus       362 ~~  363 (363)
T TIGR01437       362 IV  363 (363)
T ss_pred             hC
Confidence            63

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.91  E-value=7e-22  Score=199.49  Aligned_cols=324  Identities=19%  Similarity=0.269  Sum_probs=222.8

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCccc-ChHHHHHHHHHHHhhhCCCC---EEEecccHHHHHhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYG-TIDVHLDCEARIAKFLGTPD---SILYSYGLSTMFSA  185 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g-~~~~~~~l~~~La~~~g~e~---~i~~~sG~~a~~~a  185 (483)
                      |+|-++.   |. .++.+.+++.+.++++ +.+..+...+.. ..+...++++.+++++|.+.   .++.++++.++..+
T Consensus         2 Yld~~~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~   77 (371)
T PF00266_consen    2 YLDNAGT---GP-MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAV   77 (371)
T ss_dssp             EEBTSSS----B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHH
T ss_pred             EeeCCCc---cC-CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhh
Confidence            4554443   33 5678899999988764 322112111111 23577899999999999765   44557777888888


Q ss_pred             hhhh---ccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecC--C---CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          186 IPCF---CKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKH--N---DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       186 i~~~---~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~--~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +..+   .++++.|++....|++....    .+..|.++..++.  +   |++++++.+..          ++++|++..
T Consensus        78 ~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~----------~~~lv~~~~  147 (371)
T PF00266_consen   78 ASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNP----------DTRLVSISH  147 (371)
T ss_dssp             HHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHT----------TESEEEEES
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhcc----------ccceEEeec
Confidence            8888   68899998888888876622    2355777766653  2   67777777742          378999999


Q ss_pred             ccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHH
Q 011567          254 VYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVV  332 (483)
Q Consensus       254 v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~  332 (483)
                      +.+.+|.+.|+++|.++|++||+++++|.++++|.+.         ++++..++|++++|.+|.+|+.| |++..+++..
T Consensus       148 ~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~---------id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~  218 (371)
T PF00266_consen  148 VENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVP---------IDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAI  218 (371)
T ss_dssp             BETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-----------TTTTTESEEEEESTSTTSSSTEEEEEEEHHHH
T ss_pred             ccccccEEeeeceehhhhhccCCceeEechhcccccc---------ccccccccceeeecccccCCCCchhhheehhhhh
Confidence            9999999999999999999999999999999987653         34544577999999999445666 8888888888


Q ss_pred             HHHHhcCCce------------------eecC-CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCce
Q 011567          333 DHQRLSSSGY------------------VFSA-SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       333 ~~~~~~~~~~------------------~fs~-~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                      +.++....++                  .|.. +.|.....+..++++.+.+.  +.+.++..++.+++++.|.+++++.
T Consensus       219 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~  298 (371)
T PF00266_consen  219 ERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIE  298 (371)
T ss_dssp             HHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             hccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCcee
Confidence            8775332221                  2332 34555566666788888532  4578889999999999999988877


Q ss_pred             eec----CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---cccCCCCCceEEEccCCCCHHHH
Q 011567          392 IAS----NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---LDKCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       392 i~~----~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---~~~~~~~~~lRi~~~~~~t~edi  464 (483)
                      +.+    ....+++.+.+....         ..++... |+++||.++.+....   .......+.||++++..+|++||
T Consensus       299 ~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~-L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv  368 (371)
T PF00266_consen  299 VLGPDDEPRRPSIVSFNLPGSD---------ADDVVKY-LEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDV  368 (371)
T ss_dssp             ESSSSCGGBGTTEEEEEETTSS---------HHHHHHH-HHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHH
T ss_pred             EeeecccccccceEEEeecCCC---------HHHHHHH-HhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHH
Confidence            754    234678888884321         1345554 444599998854322   00000125699999999999999


Q ss_pred             HHH
Q 011567          465 VKA  467 (483)
Q Consensus       465 ~~~  467 (483)
                      |++
T Consensus       369 ~~l  371 (371)
T PF00266_consen  369 DRL  371 (371)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.91  E-value=2e-21  Score=192.37  Aligned_cols=318  Identities=17%  Similarity=0.220  Sum_probs=233.0

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-CC-CEEEecccH-HHHHhh
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-TP-DSILYSYGL-STMFSA  185 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-~e-~~i~~~sG~-~a~~~a  185 (483)
                      ..+|+++| |++|.+  |.+.+++.+.++...        .|. .+...++++.+++++| .+ +.|+.+.|+ +.+...
T Consensus        23 ~~i~LssNenP~gp~--~~~~~~~~~~~~~~~--------rYP-d~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l   91 (356)
T COG0079          23 GIIKLSSNENPYGPP--PKVIEAIRAALDKLN--------RYP-DPDYRELRAALAEYYGVVDPENVLVGNGSDELIELL   91 (356)
T ss_pred             cceeecCCCCCCCCC--HHHHHHHHHHHHhhc--------cCC-CCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHH
Confidence            68999999 898874  889998888776421        121 1246889999999999 54 455555555 778888


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      +++++.+||.|++..+.+..+...++..|.+++.++..    |++.+.+.+.+   +       .++|++..++|+||..
T Consensus        92 ~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~---~-------~~lv~i~nPNNPTG~~  161 (356)
T COG0079          92 VRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD---K-------TKLVFLCNPNNPTGTL  161 (356)
T ss_pred             HHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhc---C-------CCEEEEeCCCCCCCCC
Confidence            99999999999999999999888999999999888774    44444433332   2       5678888888899999


Q ss_pred             cChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHH
Q 011567          262 APLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR  336 (483)
Q Consensus       262 ~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~  336 (483)
                      .+.++|.++.+..  +.++++||+|.-+. +.   ...+... . .+.-+++.||||++|..|   ||+++++++++.++
T Consensus       162 ~~~~~l~~l~~~~~~~~~vVvDEAY~eF~-~~---~~~~l~~-~-~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~  235 (356)
T COG0079         162 LPREELRALLEALPEGGLVVIDEAYIEFS-PE---SSLELLK-Y-PPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALN  235 (356)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEeCchhhcC-Cc---hhhhhcc-C-CCCEEEEEecHHhhhcchhceeeccCCHHHHHHHH
Confidence            9988888887765  88999999997542 11   1112111 1 222477899999999777   99999999999998


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce-eecCCCCCEEEEEecCCCCCchhh
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS-IASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~-i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      ....+|    +.+..+.+++.++++.-+...+..+++.+.++++.+.|+.+. +. +. +...+++.+++++        
T Consensus       236 ~vr~p~----~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~-pS~aNFvlv~~~~--------  301 (356)
T COG0079         236 KVRPPF----NVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFGVF-PSQANFVLVRVPD--------  301 (356)
T ss_pred             HhcCCC----CCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeec-CCCCcEEEEECCC--------
Confidence            877776    446667777777776554445678888899999999999874 44 44 3468899988753        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .. ...+.+.+ .++||+++.......    .+..+||++   -|++|.++++++|+++++.
T Consensus       302 ~~-~~~l~~~L-~~~giivR~~~~~~~----~~~~lRitv---gt~een~~ll~AL~~~~~~  354 (356)
T COG0079         302 AE-AAALAEAL-LKKGILVRDCSSVGL----LPGYLRITV---GTPEENDRLLAALREVLKG  354 (356)
T ss_pred             cc-HHHHHHHH-HHCCEEEEeCCCCCC----CCCeEEEEe---CCHHHHHHHHHHHHHHHhc
Confidence            11 22456654 456999997643111    123599999   4889999999999988753

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.91  E-value=2.4e-21  Score=195.08  Aligned_cols=290  Identities=16%  Similarity=0.185  Sum_probs=203.7

Q ss_pred             hHHHHHHHHHHHhhhCCCC---EE-EecccHHHHHhhhhhhccCCc-EEEEcCCchhHH-HhHhhhcCCeEEEecCC---
Q 011567          153 IDVHLDCEARIAKFLGTPD---SI-LYSYGLSTMFSAIPCFCKKGD-LIVADEGVHWGI-QNGLYLSRSTVVYFKHN---  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~---~i-~~~sG~~a~~~ai~~~~~~gd-iI~~~~~~h~s~-~~g~~~s~~~v~~~~~~---  223 (483)
                      .+...++++.+++++|.+.   .+ +.++|++++..++.++..++| +|+....+|+.. ...++..|.+++.++.+   
T Consensus        34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~  113 (363)
T TIGR02326        34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVE  113 (363)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCC
Confidence            3567889999999999752   34 558889999999988876665 556666666663 44456677777766543   


Q ss_pred             --CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC
Q 011567          224 --DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG  301 (483)
Q Consensus       224 --d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~  301 (483)
                        |++++++.+++..        .++++.+..+.+++|.+.|+++|.++|++||+++++|+++++|...         ++
T Consensus       114 ~~d~~~l~~~l~~~~--------~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~---------~~  176 (363)
T TIGR02326       114 PPDVVEVEAILAADP--------AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP---------ID  176 (363)
T ss_pred             CCCHHHHHHHHhhCC--------CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcc---------cc
Confidence              6788888776532        1456666777788999999999999999999999999999876432         22


Q ss_pred             CCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcCC------------------ceeecCCCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSS------------------GYVFSASLPPYLASAAITAID  361 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~~------------------~~~fs~~~~p~~~aaa~~al~  361 (483)
                      +...++|++++|++|++ |+.| ||++.+++.++.+.....                  .+.|+.  ++....+..++++
T Consensus       177 ~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~--~~~~~~al~~al~  254 (363)
T TIGR02326       177 IAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTS--PTHVVHAFAQALL  254 (363)
T ss_pred             hhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHH
Confidence            33335699999999998 5566 999998887776432111                  123433  5556666667777


Q ss_pred             HHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEE
Q 011567          362 VLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV  435 (483)
Q Consensus       362 ~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~  435 (483)
                      .+.+.   +++.++++++.+++++.|+++ |+.+...+  .+++ ..+.+.+...      ....++.+. |+++||.+.
T Consensus       255 ~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~-L~~~gi~v~  326 (363)
T TIGR02326       255 ELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD------YRFADFYQR-LKEQGFVIY  326 (363)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC------CCHHHHHHH-HHHCCEEEE
Confidence            66432   457889999999999999886 77765432  4554 4565532100      012245665 455699998


Q ss_pred             eecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       436 ~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ++..+.      +..+|+++...+|.+|+++++++|++++
T Consensus       327 ~g~~~~------~~~iRi~~~~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       327 PGKVSQ------VDCFRIGNIGEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             CCcCCC------CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            664321      2459999877899999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.91  E-value=2.6e-22  Score=202.86  Aligned_cols=214  Identities=14%  Similarity=0.188  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||+++|.+.++++++|++|+..++.++.++||.|+++...|.+...    .+...|.++..++.+|+++++
T Consensus        59 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~  138 (391)
T TIGR01328        59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVK  138 (391)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Confidence            4578999999999999999999999999999999999999999999887765433    344567888888877887777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|++|.+++++|.+.|+++|.++|++||+++|+|++++.+..++   .    .+   ...|+
T Consensus       139 ~~i~~----------~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---~----~~---~g~Di  198 (391)
T TIGR01328       139 AHIKD----------NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN---P----VA---LGVDV  198 (391)
T ss_pred             Hhhcc----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC---c----hh---cCCCE
Confidence            76642          37899999999999999999999999999999999999998765432   1    11   23489


Q ss_pred             EEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.+|+.    ||++++++++++.++.......++..++|..++.++..++.+   +..+++..++++.+.+.|+
T Consensus       199 vv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl---~~r~~~~~~na~~la~~L~  275 (391)
T TIGR01328       199 VVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL---NIRMKRHSENAMKVAEYLK  275 (391)
T ss_pred             EEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH---HHHHHHHHHHHHHHHHHHH
Confidence            999999999843    588999999888776533233345567888888777666544   3467888899999999998


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+++
T Consensus       276 ~~p~v  280 (391)
T TIGR01328       276 SHPAV  280 (391)
T ss_pred             hCCCc
Confidence            87654

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.91  E-value=1.6e-21  Score=200.77  Aligned_cols=345  Identities=17%  Similarity=0.177  Sum_probs=233.4

Q ss_pred             eeEEEeecCCC-CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEe-cccH
Q 011567          109 KEVVNFASANY-LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILY-SYGL  179 (483)
Q Consensus       109 ~~~id~~s~~~-lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~-~sG~  179 (483)
                      ...++|..++. ..+-+...+.++..+.++.++....   ..|++..-..+|++.+++++    |.   ++-|+. ++..
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~---~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q  165 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLA---LQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ  165 (459)
T ss_pred             CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhh---hcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence            57889988742 1332445667777777765543311   12333233445555555554    42   244555 5555


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      +|+..+.+.++++||.|+++.+.|......++..|.+++.++.+    |++.||+.+++...        +.++++...+
T Consensus       166 ~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~--------k~~y~~P~~q  237 (459)
T COG1167         166 QALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKP--------KAVYVTPTFQ  237 (459)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCC--------cEEEECCCCC
Confidence            88999999999999999999999999999999999999988765    79999999877521        3444445556


Q ss_pred             CCCCCccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCCceeeccHH
Q 011567          256 QNSGQIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSAR  330 (483)
Q Consensus       256 ~~~G~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~  330 (483)
                      |++|...++   ++|.++|++|++++|.||.|+...+..  .........+..+..|+++||||++.  ..-||++++++
T Consensus       238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~--~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~  315 (459)
T COG1167         238 NPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDG--PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE  315 (459)
T ss_pred             CCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCC--CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence            779999995   789999999999999999999866542  22222234444566899999999996  44599999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHH--HHh-cCcHHHHHHHHHHHHHHHhhccCC--CceeecCCCCCEEEEEe
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAID--VLE-ENPDLITKLKKNTAILRTGLSDIH--GLSIASNPESPIVFLIL  405 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~--~l~-~~~~~~~~l~~~~~~l~~~L~~~~--~~~i~~~~~~~i~~l~l  405 (483)
                      +++++.........++  +.+...+...-+.  .++ ....++..++++.+.+.+.|.+..  +..+..+..+.++|+.+
T Consensus       316 ~~~~~~~~k~~~~~~~--s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l  393 (459)
T COG1167         316 LIEKLLRLKQAADLGP--SSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLEL  393 (459)
T ss_pred             HHHHHHHHHHHhcCCC--ChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEc
Confidence            9888765443333333  3333232222222  011 124567777788888888887763  34555555677888888


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +....        ..++...++++ |+.+.+ +........ ..+.+|++++. .+++++++++..|.+++++..
T Consensus       394 ~~~~~--------~~~l~~~a~~~-gv~i~~~g~~f~~~~~-~~~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         394 PEGID--------ARELLAAALEK-GVVVTPLGSAFSADGD-PRNGLRLSFSS-PSEEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             CCCCC--------HHHHHHHHHHC-CCEEEcCCccccCCCC-CCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHHh
Confidence            65421        33567776665 888877 544332211 23469999876 569999999999999988764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=3.6e-21  Score=192.70  Aligned_cols=317  Identities=15%  Similarity=0.187  Sum_probs=217.5

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEeccc-HHHHHhhhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYG-LSTMFSAIPC  188 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG-~~a~~~ai~~  188 (483)
                      .++|..+.. .+..++.+.+++.+.+......      .|+. +...++++.+|++++.+ +.+++++| ++++..++.+
T Consensus        24 ~~~l~~~~~-~~~~p~~~~~a~~~~~~~~~~~------~y~~-~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~   95 (351)
T PRK14807         24 KYKMDANET-PFELPEEVIKNIQEIVKSSQVN------IYPD-PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLA   95 (351)
T ss_pred             eeEccCCCC-CCCCCHHHHHHHHHHhhcCccc------CCCC-ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHH
Confidence            477777632 3334588999988877532221      1222 22478999999999864 45556555 5678888899


Q ss_pred             hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                      ++++||.|+++.+++......++..|.+++.++.+     |++++++.+...         ++++|++..+++++|.+.+
T Consensus        96 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~---------~~k~v~l~~p~NPtG~~~~  166 (351)
T PRK14807         96 FINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKY---------QPKLVFLCNPNNPTGSVIE  166 (351)
T ss_pred             hcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhcc---------CCCEEEEeCCCCCCCCCCC
Confidence            99999999999998887777778888888877543     566676665431         2566666788999999999


Q ss_pred             hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCC
Q 011567          264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSS  340 (483)
Q Consensus       264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~  340 (483)
                      .+++.++|++++.++|+||+|... .+.   ......+  ..+..|+++||||++|.+|   ||+++++++++.++....
T Consensus       167 ~~~l~~l~~~~~~~~ivDe~y~~~-~~~---~~~~~~~--~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~  240 (351)
T PRK14807        167 REDIIKIIEKSRGIVVVDEAYFEF-YGN---TIVDVIN--EFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS  240 (351)
T ss_pred             HHHHHHHHHhCCCEEEEeCcchhh-ccc---chHHHhh--hCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccC
Confidence            999999999999999999999643 232   1111111  1233688999999998777   999999999998875433


Q ss_pred             ceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          341 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       341 ~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      .+  +  .+++...++.+.++.- ...+..+.++++.+.+.+.|++++|+.+. +++++++++.+.+           ..
T Consensus       241 ~~--~--~~~~~q~~~~~~l~~~-~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~-----------~~  303 (351)
T PRK14807        241 PY--N--INSLSQVIALKVLRTG-VLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKD-----------AD  303 (351)
T ss_pred             CC--C--cCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCC-----------HH
Confidence            32  2  2445555555555421 12345566777888888888877787765 4567777777631           22


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ++++.++ ++||.+.+....    ...++.+||++.   +.++.++++++|++++
T Consensus       304 ~~~~~l~-~~gV~v~~~~~~----~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        304 YVYQGLL-ERGILVRDFSKV----EGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             HHHHHHH-HCCEEEEECCCC----CCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence            4566555 459999764211    012355999985   6788999999988753

>PRK03321 putative aminotransferase; Provisional

Probab=99.91  E-value=9.6e-22  Score=197.11  Aligned_cols=315  Identities=18%  Similarity=0.195  Sum_probs=216.7

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEecccH-HHHHhhh
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYGL-STMFSAI  186 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG~-~a~~~ai  186 (483)
                      .++||.++ +.+|.  .+.+.+++.+.+....        .|+ .....++++.+|++++.+ +.+++++|+ +++..++
T Consensus        23 ~~i~l~~~~~~~~~--~~~~~~a~~~~~~~~~--------~y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~   91 (352)
T PRK03321         23 GAIKLSSNETPFGP--LPSVRAAIARAAAGVN--------RYP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLV   91 (352)
T ss_pred             cceeccCCCCCCCC--CHHHHHHHHHHHHhcC--------cCC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHH
Confidence            47999887 44443  4788888887765421        121 123678999999999864 456666666 5566677


Q ss_pred             hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          187 PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       187 ~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      .++.++||.|+++.+.+......++..|.+++.++.+     |++++++.++.          ++++|++..+++++|.+
T Consensus        92 ~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~----------~~~~v~l~~p~NPtG~~  161 (352)
T PRK03321         92 QATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITD----------RTRLIFVCNPNNPTGTV  161 (352)
T ss_pred             HHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc----------CCCEEEEeCCCCCcCCC
Confidence            8888999999999888777766777788888877654     45666655532          25566677888999999


Q ss_pred             cChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHH
Q 011567          262 APLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR  336 (483)
Q Consensus       262 ~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~  336 (483)
                      .|.+++.++|++  +++++|+||+|.....+...........  ..+..++++|+||+||..|   ||+++++++++.++
T Consensus       162 ~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~  239 (352)
T PRK03321        162 VTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALR  239 (352)
T ss_pred             cCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHH
Confidence            999999999987  5999999999986554321111111111  1223578899999998666   99999999999887


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                      .....+    +.+++...++.++++..+...+..+++.++...+.+.|.+. ++.+.. +.++++++.+..       + 
T Consensus       240 ~~~~~~----~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~-~~g~~i~i~l~~-------~-  305 (352)
T PRK03321        240 KVAVPF----SVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWTVPP-SQANFVWLPLGE-------R-  305 (352)
T ss_pred             HhcCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccCC-CCCCEEEEeCCC-------C-
Confidence            543222    33566666666666433222334455555667788888775 666543 467888877631       1 


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                        ..++++.+ +++||.+.+..         .++|||++   .+.+++++++++|++++.
T Consensus       306 --~~~~~~~l-~~~gI~v~~~~---------~~~iRi~~---~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        306 --TADFAAAA-AEAGVVVRPFA---------GEGVRVTI---GAPEENDAFLRAARAWRA  350 (352)
T ss_pred             --HHHHHHHH-HHCCEEEEccC---------CCcEEEee---CCHHHHHHHHHHHHHHhc
Confidence              23567764 55799997621         23599998   589999999999998753

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.91  E-value=1.5e-21  Score=195.99  Aligned_cols=324  Identities=15%  Similarity=0.129  Sum_probs=208.5

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC----CEEEe-cccHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILY-SYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~i~~-~sG~~a  181 (483)
                      ++++++||.+++.... ..|.+.+++.+......  .+   ...|..++..++++.+.+.+|..    +.++. ++++++
T Consensus        19 ~~~~~i~l~~~~p~~~-~~~~~~~~~~~~~~~~~--Y~---~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~   92 (357)
T TIGR03539        19 HPDGIVDLSVGTPVDP-VPPLIRAALAAAADAPG--YP---QTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKEL   92 (357)
T ss_pred             CCCCeEEccCCCCCCC-CCHHHHHHHHHHHhhCC--CC---cccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHH
Confidence            4567899999865322 45777787766544211  11   13344555556666665554532    45555 555677


Q ss_pred             HHhhhhhh-ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          182 MFSAIPCF-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       182 ~~~ai~~~-~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      +..++.++ +++||.|+++.+.|..+...+...|.+++.++  |++.++.      .       ++++|+++.++|++|.
T Consensus        93 i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~--~~~~l~~------~-------~~~~v~~~~p~NPtG~  157 (357)
T TIGR03539        93 VAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD--DPTELDP------V-------GPDLIWLNSPGNPTGR  157 (357)
T ss_pred             HHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC--ChhhcCc------c-------CccEEEEeCCCCCcCc
Confidence            77777877 79999999999999988888888888887763  4332221      1       3677778889999999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccc--cCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          261 IAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH--CGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       261 i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~--~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      ..+   +++|.++|++||+++|+||+|....++.........  .+.. .+..|+++||||.++.+|   ||++++++++
T Consensus       158 ~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~  236 (357)
T TIGR03539       158 VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGD-HTGLLAVHSLSKRSNLAGYRAGFVAGDPALV  236 (357)
T ss_pred             cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCc-cccEEEEeccccccCCCceeEEEEecCHHHH
Confidence            987   778999999999999999999753332211111100  0111 123588999999997555   9999999988


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.++.......+  +.++....++.++++.-......++.++++.+.+.+.|++. |+.+..+..+.++++.++.     
T Consensus       237 ~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~~~~~~~-----  308 (357)
T TIGR03539       237 AELLTVRKHAGL--MVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLWATRGE-----  308 (357)
T ss_pred             HHHHHHHhhccc--CCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEEEEECCC-----
Confidence            877543322222  23455555555555321112345677778888898998885 7766544445456665521     


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                        +   ..++.+. |.++||.+.+..+....   .+..+||++..  ++++++++++.|
T Consensus       309 --~---~~~~~~~-l~~~gV~v~pg~~f~~~---~~~~iRis~~~--~~~~i~~~~~~l  356 (357)
T TIGR03539       309 --D---AWDTVDR-LAELGILVAPGDFYGPA---GSQHVRVALTA--TDERIAAAVARL  356 (357)
T ss_pred             --C---HHHHHHH-HHhCCEEECCccccCCC---CCCeEEEEecC--CHHHHHHHHHhh
Confidence              1   2245665 45679999887643211   12459999975  689999988765

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.6e-21  Score=195.86  Aligned_cols=319  Identities=15%  Similarity=0.151  Sum_probs=222.2

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccH-HHHH
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGL-STMF  183 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~-~a~~  183 (483)
                      +++++||..+ |.++  ..|.+++++.+.+......      .|.. ....+|++.+|++++.+  +.+++++|+ +++.
T Consensus        25 ~~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~   95 (356)
T PRK04870         25 ATGMVKLDAMENPYR--LPAELRAELGERLAEVALN------RYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQ   95 (356)
T ss_pred             CCCceeCcCCCCCCC--CCHHHHHHHHHHhhccccc------cCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHH
Confidence            4578999887 5444  4589999999888652221      1221 12478999999999864  356666665 6777


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      .++.+++++||.|+++.++|..+...++..|.+++.++.+     |++++++.+...         ++++|++...++++
T Consensus        96 ~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~---------~~~~v~l~~p~NPt  166 (356)
T PRK04870         96 LLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEH---------RPALVFLAYPNNPT  166 (356)
T ss_pred             HHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcC---------CCCEEEEcCCCCCC
Confidence            8888899999999999999999888888999998887653     567777666432         24566666678899


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.+.+++.++++..+.++|+||+|.... +   ......  +...+..+++.|+|| ++..|   ||+++++++++.+
T Consensus       167 G~~~~~~~~~~i~~~~~~~ii~De~y~~~~-~---~~~~~~--~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~  239 (356)
T PRK04870        167 GNLFDDADVERIIEAAPGLVVVDEAYQPFA-G---DSWLPR--LARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAEL  239 (356)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCchhhc-C---cchHHH--HhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHH
Confidence            999998888888877789999999996432 1   111111  111223688999999 77666   9999999999887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....+    +.+.+...++..+++..+...+.+++++++.+.+.+.|++++++.+. ++.+.++++.+++        
T Consensus       240 ~~~~~~~----~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~--------  306 (356)
T PRK04870        240 DKVRPPY----NVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVPD--------  306 (356)
T ss_pred             HHccCCC----cCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECCC--------
Confidence            6544332    23444444455555432222346777888899999999887787665 4467777777631        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         ..++.+. |+++||.+.+.....   ...+..+||++.   +.+++++++++|+++
T Consensus       307 ---~~~~~~~-l~~~gI~v~~~~~f~---~~~~~~iRis~~---~~~~~~~l~~al~~~  355 (356)
T PRK04870        307 ---AAAVFDG-LKTRGVLVKNLSGMH---PLLANCLRVTVG---TPEENAQFLAALKAA  355 (356)
T ss_pred             ---HHHHHHH-HHHCCEEEEECCCCC---CCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence               1245554 556799998764321   011345999985   789999999999875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.91  E-value=2.5e-22  Score=203.06  Aligned_cols=287  Identities=15%  Similarity=0.144  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhh----cCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL----SRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~----s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||+.+|+++|.++++++++|++|+..++.+++++||.|+++.+.|+.....+..    .+.++..++..|+++++
T Consensus        61 pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~  140 (386)
T PRK06767         61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIE  140 (386)
T ss_pred             cchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHH
Confidence            45689999999999999999999999999999999999999999999988876655432    24455555556777776


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|++|.+++++|.+.|+++|.++|+++|+++|+||+|+.+..+   +.+      . ..+|+
T Consensus       141 ~~i~~----------~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~---~pl------~-~g~Di  200 (386)
T PRK06767        141 NKIRP----------NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQ---RPL------E-LGCDA  200 (386)
T ss_pred             HhhCc----------CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccC---Cch------h-cCCcE
Confidence            66532          2689999999999999999999999999999999999999755433   111      1 23489


Q ss_pred             EEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.+++.    ||+++++++.++.++..... .+++.++|+.+++++..++.+   +...++.++++..+.+.|+
T Consensus       201 v~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~-~~g~~~~~~~a~l~~~~L~tl---~~r~~~~~~~a~~la~~L~  276 (386)
T PRK06767        201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK-DIGGIMAPFDAWLLLRGLKTL---AVRMDRHCDNAEKIVSFLK  276 (386)
T ss_pred             EEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH-HhCCCCCHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHH
Confidence            999999999754    68999998877664322111 223446788777666665544   3477888999999999999


Q ss_pred             cCCCceeec-----------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-------ccCC-
Q 011567          386 DIHGLSIAS-----------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-------DKCR-  446 (483)
Q Consensus       386 ~~~~~~i~~-----------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-------~~~~-  446 (483)
                      +++++..+.           ...+.++.+.++.       ......++++. |+..++.++-+...++       .+.. 
T Consensus       277 ~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~-------~~~~~~~f~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~~~  348 (386)
T PRK06767        277 NHDAVEGVWYPEGELASRQMKRGGGVISFSIKG-------GKEETQAFIND-LHFITIAVSLGDTETLIQHPATMTHAAI  348 (386)
T ss_pred             cCCCccEEECCCcHHHHHhCCCCCceEEEEEcC-------CHHHHHHHHHh-CCccEEecCCCCcCccccCCCccccccC
Confidence            988876432           1245688888842       12234466664 4444555554433221       0000 


Q ss_pred             ---------CCC-ceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          447 ---------LPV-GIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       447 ---------~~~-~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                               .++ -||+++..    ||.+.+++-|++++.
T Consensus       349 ~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~  384 (386)
T PRK06767        349 PAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALK  384 (386)
T ss_pred             CHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                     112 39999976    556666666666654

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.90  E-value=4.6e-21  Score=195.13  Aligned_cols=297  Identities=15%  Similarity=0.163  Sum_probs=212.2

Q ss_pred             hHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecCC----
Q 011567          153 IDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKHN----  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~~----  223 (483)
                      .+...++++.+++++|.+  + .++.++|++++..++..+.++||.|++....|++..  ..++..|.+++.++.+    
T Consensus        41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~  120 (401)
T PLN02409         41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQG  120 (401)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCC
Confidence            467789999999999874  2 455588889999999888899998888887776653  4455667787777643    


Q ss_pred             -CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHH--HHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          224 -DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL--KEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       224 -d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l--~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                       |++++++.+++...      .++++|++.++.+.+|.+.|+++|.++  |+++|+++++|++++.|...         .
T Consensus       121 ~~~~~l~~~l~~~~~------~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~---------i  185 (401)
T PLN02409        121 ADLDILKSKLRQDTN------HKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALD---------F  185 (401)
T ss_pred             CCHHHHHHHHhhCcC------CCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcc---------c
Confidence             57778777764210      126788888888889999999999999  99999999999999865321         2


Q ss_pred             CCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcC-Ccee--------------e-cCCCcHHHHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSS-SGYV--------------F-SASLPPYLASAAITAIDV  362 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~-~~~~--------------f-s~~~~p~~~aaa~~al~~  362 (483)
                      +++..++|++++|.+|+|+ +.| ||++.+++.++.+.... .++.              + ..+.|.....+..++++.
T Consensus       186 d~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~  265 (401)
T PLN02409        186 RMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDL  265 (401)
T ss_pred             cccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Confidence            3332356999999999995 454 88888888877765321 1111              1 113344456667788888


Q ss_pred             HhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC---CCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe
Q 011567          363 LEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP---ESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT  436 (483)
Q Consensus       363 l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~  436 (483)
                      +.+.  +.+.++.+++.+++++.|+++ |+++..+.   .++ +.++.++...     +   ..++...+++++||.+..
T Consensus       266 ~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~-----~---~~~l~~~l~~~~~i~i~~  336 (401)
T PLN02409        266 IFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI-----D---SAEIVKNAWKKYNLSLGL  336 (401)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCC-----C---HHHHHHHHHHhCCEEEEc
Confidence            7643  467888999999999999886 88776531   243 4445553211     1   224666666778999987


Q ss_pred             ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          437 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       437 ~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +..+.-     ...+||+....+|++|+..++++|++++.++
T Consensus       337 G~~~~~-----~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~  373 (401)
T PLN02409        337 GLNKVA-----GKVFRIGHLGNVNELQLLGALAGVEMVLKDV  373 (401)
T ss_pred             CCCccc-----CCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            643211     2349999999999999999999999988764

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.90  E-value=3.2e-21  Score=191.37  Aligned_cols=302  Identities=13%  Similarity=0.070  Sum_probs=204.5

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      .+++|+++| |++|.... .+.+   ..+..|..         +    ..+|++.|++++|.++.++.+++.+++..+. 
T Consensus        20 ~~~i~l~~ne~p~~~~~~-~~~~---~~~~~yp~---------~----~~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~-   81 (330)
T PRK05664         20 ADWLDLSTGIAPWPWPVP-AIPA---DAWARLPE---------T----DDGLEAAARAYYGAPQLLPVAGSQAAIQALP-   81 (330)
T ss_pred             HHheeecCCcCCCCCCCc-ccCH---HHHHhCCC---------C----hHHHHHHHHHHhCCCCEEECcCHHHHHHHHH-
Confidence            468999999 88888433 3322   33444521         1    1688999999999876666666667877664 


Q ss_pred             hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---h
Q 011567          188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---L  264 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L  264 (483)
                       ...+||.|+++.+++..+...++..|.+++.++.   +++++.+..          ...++++.| +|+||.+.+   +
T Consensus        82 -~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~---~~~~~~~~~----------~~~v~l~nP-~NPTG~~~s~~~l  146 (330)
T PRK05664         82 -RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE---AEVEAALDS----------LDVLVVVNP-NNPTGRRFDPARL  146 (330)
T ss_pred             -HccCCCEEEEcCCChHHHHHHHHHcCCeEEEech---hhHhhhhcC----------CCEEEEeCC-cCCCCCccCHHHH
Confidence             3579999999999999999999999999988864   345544421          234455544 689999998   6


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCc
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~  341 (483)
                      ++|+++|+++|+++|+||+|..+.  + ...+.   ...+.+..++++||||++|.+|   ||+++++++++.+......
T Consensus       147 ~~l~~~~~~~~~~iI~DE~y~~~~--~-~~s~~---~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~  220 (330)
T PRK05664        147 LAWHARLAARGGWLVVDEAFMDNT--P-QHSLA---ACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGP  220 (330)
T ss_pred             HHHHHHHHhcCCEEEEECCcccCC--C-ccccc---ccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCC
Confidence            667777899999999999996432  1 11111   2222333588999999999888   9999999999888755433


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      +    +.+.....++.++|+........++.++++.+++.+.|++. ++... .+...++++.+.        +   ..+
T Consensus       221 ~----~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~~~~~f~~~~~~--------~---~~~  283 (330)
T PRK05664        221 W----TVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPA-GGCALFQWVRTE--------D---AAA  283 (330)
T ss_pred             C----CCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCcceEEEEecC--------C---HHH
Confidence            2    22445555566666533222356788888889999999886 65421 112234444431        1   235


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.+.+ .++||.+....        .++.+||++..  ++++++++.++|+++.++
T Consensus       284 ~~~~l-~~~gi~v~~f~--------~~~~iRis~~~--~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        284 LHEFL-ARRGILTRLFE--------QPASLRFGLPA--DEADWARLDQALLAYRKE  328 (330)
T ss_pred             HHHHH-HHCCeEEEECC--------CCCeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence            66654 45699997431        13569999874  678899999998877554

>PRK14012 cysteine desulfurase; Provisional

Probab=99.90  E-value=3.1e-21  Score=196.91  Aligned_cols=334  Identities=14%  Similarity=0.145  Sum_probs=213.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHH---hcCCCCCCCCC-cccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALE---KYGVGSCGPRG-FYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~---~~g~g~~~~~~-~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      -|+|.++.   +. .++.+.+++.+.+.   .++........ .+...+...++++.+++++|.+  +.++.++|++++.
T Consensus         5 iyld~a~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~   80 (404)
T PRK14012          5 IYLDYSAT---TP-VDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDN   80 (404)
T ss_pred             EEecCcCC---CC-CCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHH
Confidence            46776664   33 56788899888886   23221110000 0111246778999999999975  3666688889988


Q ss_pred             hhhhhhc----cCCcEEEEcCCchhHHHhHhh---hcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          184 SAIPCFC----KKGDLIVADEGVHWGIQNGLY---LSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       184 ~ai~~~~----~~gdiI~~~~~~h~s~~~g~~---~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .++.++.    ++||.|+++...|.+......   ..|.+++.++.+     |+++|++.+.+          ++++|++
T Consensus        81 ~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~----------~t~lv~~  150 (404)
T PRK14012         81 LAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD----------DTILVSI  150 (404)
T ss_pred             HHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC----------CCEEEEE
Confidence            8877653    789999999999987754433   347777776543     67777776643          2678999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~  330 (483)
                      ..+++++|.+.|+++|.++|++||+++|+|+++++|...         +++....+|++++|++|.+|+.| |+++.+++
T Consensus       151 ~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~  221 (404)
T PRK14012        151 MHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVP---------IDLSKLKVDLMSFSAHKIYGPKGIGALYVRRK  221 (404)
T ss_pred             ECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCcccCCCCEEEEehhhccCCCceEEEEEecC
Confidence            999999999999999999999999999999999876432         12222346999999999888655 66655544


Q ss_pred             HHHHHHh--cCCce--eec-CCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCC--C-CCEE
Q 011567          331 VVDHQRL--SSSGY--VFS-ASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP--E-SPIV  401 (483)
Q Consensus       331 ~~~~~~~--~~~~~--~fs-~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~-~~i~  401 (483)
                      ....+..  .+.+.  .|. ++.+.....+..++++.++. ..+..++.+++.+++.+.|++++++.+.+..  . .+..
T Consensus       222 ~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~  301 (404)
T PRK14012        222 PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNL  301 (404)
T ss_pred             CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEE
Confidence            3221111  11110  021 12333334444456665543 2346788888999999999888777665321  2 2233


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc--------------cCCCCCceEEEccCCCCHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD--------------KCRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~--------------~~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      .+.+....    .     .++... |+  ++.+.........              ....+..||++++..+|++|+|++
T Consensus       302 ~~~~~~~~----~-----~~~~~~-l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~  369 (404)
T PRK14012        302 NVSFNYVE----G-----ESLIMA-LK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYA  369 (404)
T ss_pred             EEEEeCcC----H-----HHHHHh-CC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHH
Confidence            33332111    1     134442 33  5555443221100              001124599999999999999999


Q ss_pred             HHHHHHHHHHH
Q 011567          468 CESLKRISAVV  478 (483)
Q Consensus       468 ~~~l~~~~~~~  478 (483)
                      +++|+++++++
T Consensus       370 ~~~l~~~~~~~  380 (404)
T PRK14012        370 IELVRKSIGKL  380 (404)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>PLN02672 methionine S-methyltransferase

Probab=99.90  E-value=4.4e-21  Score=209.29  Aligned_cols=344  Identities=15%  Similarity=0.167  Sum_probs=229.7

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC----CEEEecccH-H
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGL-S  180 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~i~~~sG~-~  180 (483)
                      +|+.+|++..+ +.++  .+|.+++++.+.+.++..       .+|..++...+.+.+++.+|.+    +.|++++|+ +
T Consensus       695 ~g~~vI~LsinE~d~p--pPp~V~eAi~eal~~~~~-------s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~e  765 (1082)
T PLN02672        695 QESSLIHMDVDESFLP--VPSAVKASIFESFVRQNI-------SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLA  765 (1082)
T ss_pred             CCCCEEEEeCCCCCCC--CCHHHHHHHHHHHhhcCC-------CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHH
Confidence            46789999998 5544  568999999988866432       3455677889999999988753    357777776 5


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ++..++.+++++||.|++..+++..+...++..|.+++.++.+       |.+.|++.++...        +..++++.|
T Consensus       766 lL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~--------~~~I~L~nP  837 (1082)
T PLN02672        766 LFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVK--------KPWVYISGP  837 (1082)
T ss_pred             HHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC--------CCEEEEECc
Confidence            5557789999999999999999999999999999999887653       4566666653211        134566666


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCc---cc---cccC-CCCCceeEEEccccccccCCC-
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG---LT---EHCG-VPVDKIDIVTAAMGHALATEG-  322 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g---~~---~~~~-v~~~~~Di~~~s~~K~lg~~G-  322 (483)
                      .+|++|.+.+   +++|+++|++||+++|+||+|+...+......   +.   ..+. ..+...-++++||||.++.+| 
T Consensus       838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL  917 (1082)
T PLN02672        838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH  917 (1082)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence            5699999988   78899999999999999999986555321100   11   0111 001224578899999998777 


Q ss_pred             --ceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          323 --GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAID-----VLEENPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       323 --G~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~-----~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                        ||+++++ ++++.++... .+.-..+.+.++++++.+++.     +.+...+.++.++++.+++.+.|++. |+.+..
T Consensus       918 RIGylIap~~eLi~~l~~~~-~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~  995 (1082)
T PLN02672        918 EFGFLALNDSVLIDAFHSAP-GLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLE  995 (1082)
T ss_pred             HheeEEeCCHHHHHHHHHhh-hhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEec
Confidence              9999864 4888776431 111011112333333333221     11111345667888999999999886 887765


Q ss_pred             CCCCCEEEEEecCCC------CCchh---hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH
Q 011567          395 NPESPIVFLILEKST------GSMKN---DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~------~~~~~---~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      +..+.++++.+....      ...+.   ......++++.++++.||.+.++.+...     ++.+||++.  .++++++
T Consensus       996 PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~-----~g~~RIsfa--~~~e~Le 1068 (1082)
T PLN02672        996 PQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI-----PGYCRFSFA--LEDSEFD 1068 (1082)
T ss_pred             CCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-----CCeEEEEec--CCHHHHH
Confidence            545656666542100      00000   0012346888888777999998754322     344999986  4889999


Q ss_pred             HHHHHHHHHHH
Q 011567          466 KACESLKRISA  476 (483)
Q Consensus       466 ~~~~~l~~~~~  476 (483)
                      ++++.|+++..
T Consensus      1069 eALerL~kf~~ 1079 (1082)
T PLN02672       1069 RALKAIARFKE 1079 (1082)
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.90  E-value=4.4e-21  Score=192.51  Aligned_cols=324  Identities=15%  Similarity=0.131  Sum_probs=213.8

Q ss_pred             ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHH
Q 011567          106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTM  182 (483)
Q Consensus       106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~  182 (483)
                      .++++++||+.+ |.+|.  ++.+.+++.+.+....        .|... ...+|++.+|++++.+ +.+++ +++.+++
T Consensus        17 ~~~~~~i~l~~~~~~~~~--p~~~~~a~~~~~~~~~--------~y~~~-~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l   85 (356)
T PRK08056         17 ISPDQLLDFSANINPLGM--PVSLKRAIIDNLDCAE--------RYPDV-EYRHLHQALARHHQVPASWILAGNGETESI   85 (356)
T ss_pred             CChhhEEEeccccCCCCC--CHHHHHHHHHHHHhcc--------cCcCc-cHHHHHHHHHHHhCcChhhEEECCCHHHHH
Confidence            456789999998 66664  4788899888776531        12222 2578999999999853 34555 5555777


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ..+++++ .++++|+. .+.+..+...++..|.+++.++..   +.+.-++.++....       ++++|++..+++++|
T Consensus        86 ~~~~~~l-~~g~viv~-~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~k~v~l~~p~NPTG  156 (356)
T PRK08056         86 FAVVSGL-KPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADGWQLTDAILEALTP-------DLDCLFLCTPNNPTG  156 (356)
T ss_pred             HHHHHHh-CCCCEEEe-CCCcHHHHHHHHHcCCeEEEEecccccCCCccHHHHHhccC-------CCCEEEEeCCcCCCC
Confidence            7777777 56776655 456666667778888888887642   11100122222222       356777788899999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec-cHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG-SARVV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~  332 (483)
                      .+.+   +++|+++|++|++++|+||+|......  +........  ..+.+++++|+||++|..|   ||+++ +++++
T Consensus       157 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~  232 (356)
T PRK08056        157 LLPERQLLQAIAERCKSLNIALILDEAFIDFIPD--ETGFIPQLA--DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAV  232 (356)
T ss_pred             CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCc--chHHHHHhc--cCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence            9999   888999999999999999999764432  222111111  1234788999999999766   99987 46777


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.++.....  +  +.+.+...++..+++.-....+.++.++++.+++.+.|++++++.+. ++.++++++.+..+    
T Consensus       233 ~~l~~~~~~--~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~----  303 (356)
T PRK08056        233 ARMRRQQMP--W--SINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERP----  303 (356)
T ss_pred             HHHHHhCCC--C--chhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCC----
Confidence            776543222  1  23455555555555311111345677888889999999887777765 34678887776421    


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                            ..++++.++ ++||.+.+......   ..++.+||++.   ++++.++++++|++++
T Consensus       304 ------~~~~~~~l~-~~gI~v~~~~~f~~---~~~~~iRis~~---~~~~~~~l~~~l~~~~  353 (356)
T PRK08056        304 ------DIDLQRALL-TQRILIRSCANYPG---LDSRYYRVAIR---SAAENERLLAALRNVL  353 (356)
T ss_pred             ------hHHHHHHHH-HCCeEEEECCCCCC---CCCCEEEEEEc---CHHHHHHHHHHHHHHH
Confidence                  125677655 46999987653211   11245999984   7899999999998764

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.90  E-value=7.6e-21  Score=180.94  Aligned_cols=326  Identities=18%  Similarity=0.159  Sum_probs=232.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEeccc-HHHHHhhhhhhccCCcEEE
Q 011567          122 LIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYG-LSTMFSAIPCFCKKGDLIV  197 (483)
Q Consensus       122 ~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG-~~a~~~ai~~~~~~gdiI~  197 (483)
                      +...|.|.+|+.+.++..-.|.     .+++.++...+....++..+.   ++.++++.| --++..++++++++||-|+
T Consensus        37 f~~pp~i~~Al~~rvdhGvfGY-----~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vv  111 (388)
T COG1168          37 FPTPPEIIEALRERVDHGVFGY-----PYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVV  111 (388)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeE
Confidence            3367999999999998722222     234444566666666666553   467777555 5889999999999999999


Q ss_pred             EcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHH
Q 011567          198 ADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDE  266 (483)
Q Consensus       198 ~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~  266 (483)
                      +..+++....+.+...+.+++..+-.        |+++||+.+.+..         +++++...++|++|.++.   |.+
T Consensus       112 i~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~---------vkl~iLCnPHNP~Grvwt~eeL~~  182 (388)
T COG1168         112 IQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER---------VKLFILCNPHNPTGRVWTKEELRK  182 (388)
T ss_pred             ecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC---------ccEEEEeCCCCCCCccccHHHHHH
Confidence            99999999999999999988876532        8999999887632         456666777889999987   999


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC--ceeEEEccccccccCCC---ce-eeccHHHHHHHHhcCC
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD--KIDIVTAAMGHALATEG---GF-CTGSARVVDHQRLSSS  340 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~--~~Di~~~s~~K~lg~~G---G~-i~~~~~~~~~~~~~~~  340 (483)
                      |.+||.|||+++|.||+|+-.+++.. + ......+++.  +.-|.+.|-||+|+..|   ++ ++.+++..++.-..-.
T Consensus       183 i~elc~kh~v~VISDEIHaDlv~~g~-~-h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~  260 (388)
T COG1168         183 IAELCLRHGVRVISDEIHADLVLGGH-K-HIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLK  260 (388)
T ss_pred             HHHHHHHcCCEEEeecccccccccCC-C-ccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHH
Confidence            99999999999999999998877532 2 1222233332  45677778899998665   44 5666666443211111


Q ss_pred             ceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          341 GYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       341 ~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                       .......|.+...|..++.+.-+.. +++.+.++.|..++.+.|.+ +|++.+..+.++.+.++.+..-.-    ++  
T Consensus       261 -~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l----~d--  333 (388)
T COG1168         261 -RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGL----DD--  333 (388)
T ss_pred             -HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCC----Ch--
Confidence             1122345778888887787654432 46899999999999999976 579999987788888988754321    11  


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCc-eEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVG-IRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~-lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       .++.+.++++.+|.+..+......    ..| +|+.+  ..+++-++++++.|+.+++.
T Consensus       334 -~~l~~~ll~~akVal~~G~~FG~~----g~gf~RlN~--acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         334 -SELAEFLLEEAKVALSPGSTFGEE----GSGFVRLNF--ACPRAILEEALERLKRALKK  386 (388)
T ss_pred             -HHHHHHHHHhhcEeccCCCccCcC----CCceEEEec--CCCHHHHHHHHHHHHHHHhc
Confidence             134556677788999877543310    012 77754  58999999999999987764

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.90  E-value=1.3e-21  Score=196.43  Aligned_cols=287  Identities=16%  Similarity=0.161  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +.+..||++||++.|.+++++++||++|+..++.++.++||.|++.+..|.+...-    +...|.++..++.++.++++
T Consensus        50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~  129 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIA  129 (377)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence            56789999999999999999999999999999999999999998776666554321    23456777777666556666


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|++|.+.+++|.+.|+++|+++|++||+++|+|++|+.|.+.+   .+  .     .++|+
T Consensus       130 ~~i~~----------~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~---pl--~-----~gaDi  189 (377)
T TIGR01324       130 TLIQP----------NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK---PL--E-----HGVDI  189 (377)
T ss_pred             HhcCC----------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---cc--c-----cCceE
Confidence            65532          37899999999999999999999999999999999999999876542   11  1     34599


Q ss_pred             EEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      +++|++|.+++    .||+++++++..+.++..  .+.++..++|..+...+..++.+   +.++++.++++..+.+.|+
T Consensus       190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~rgl~tl---~~R~~~~~~~a~~la~~L~  264 (377)
T TIGR01324       190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREH--SYLMGQMVDADDAYTTLRGLRTL---GVRLKQHQESSLAIAKWLS  264 (377)
T ss_pred             EEecCceeccCCCCceEEEEEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence            99999999973    368888888877766532  44667778898888777777655   3467888888888888888


Q ss_pred             cCCCce-eec----------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc------
Q 011567          386 DIHGLS-IAS----------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML------  442 (483)
Q Consensus       386 ~~~~~~-i~~----------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~------  442 (483)
                      +.+.+. +..                ...+.++.+.++..      ......++.+. |+-.++.++-+...++      
T Consensus       265 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~------~~~~~~~~~~~-l~~~~~~~slG~~~sl~~~~~~  337 (377)
T TIGR01324       265 EQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL------TQKQVHAFLDH-LQLFGLGYSWGGYESLALCNQP  337 (377)
T ss_pred             hCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC------CHHHHHHHHHh-CCcceEeccCCCccceeecCCC
Confidence            765431 111                12356888888521      12223455553 4332333322222111      


Q ss_pred             --c-----c-CCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          443 --D-----K-CRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       443 --~-----~-~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                        .     . ...++-||+++..    ||.|.+++-|+++++
T Consensus       338 ~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~  375 (377)
T TIGR01324       338 ELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFE  375 (377)
T ss_pred             CCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHh
Confidence              0     0 0111239999976    455566666666654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02242 methionine gamma-lyase

Probab=99.90  E-value=1.8e-21  Score=197.75  Aligned_cols=217  Identities=16%  Similarity=0.231  Sum_probs=167.8

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh-----hhcCCeEEEecCCCHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL-----YLSRSTVVYFKHNDMDS  227 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~-----~~s~~~v~~~~~~d~~~  227 (483)
                      .+...+||+.+|+++|.+.++++++|++|+..++.++.++||.|+++.+.|..+...+     +..|.++..++..|+++
T Consensus        75 ~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~  154 (418)
T PLN02242         75 NPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEA  154 (418)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHH
Confidence            4678999999999999999999999999999999999999999999998877665443     34577777777778888


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +++.++..         ++++|+++.++|++|.+.++++|+++|++||+++|+||+|+.+.+..     . .+     ..
T Consensus       155 l~~~i~~~---------~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~-----~-~~-----g~  214 (418)
T PLN02242        155 VKKAVVPG---------KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSP-----A-RL-----GA  214 (418)
T ss_pred             HHHhcCcC---------CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCH-----H-Hc-----CC
Confidence            87776431         26899999999999999999999999999999999999997544321     1 11     24


Q ss_pred             eEEEccccccccCC----CceeeccHHHHHHHHhcCCc--eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSG--YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~--~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                      |++++|++|++++.    ||++++++++++.++....+  ..++..+.|..++.....++.   .+..+++..+++.++.
T Consensus       215 divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~t---l~~r~~~~~~~a~~la  291 (418)
T PLN02242        215 DVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPH---LSLRMKEHCRRAMEYA  291 (418)
T ss_pred             cEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCc---HHHHHHHHHHHHHHHH
Confidence            89999999999743    69999999988887654332  223334556665555443332   2346778889999999


Q ss_pred             HhhccCCCceee
Q 011567          382 TGLSDIHGLSIA  393 (483)
Q Consensus       382 ~~L~~~~~~~i~  393 (483)
                      +.|++. ++++.
T Consensus       292 ~~L~~~-~~~V~  302 (418)
T PLN02242        292 KRMKEL-GLKVI  302 (418)
T ss_pred             HHHHhC-CCEEE
Confidence            999887 55554

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=7.7e-21  Score=190.88  Aligned_cols=317  Identities=18%  Similarity=0.182  Sum_probs=210.1

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~  183 (483)
                      +|.+++||..+ +.++.  .|.+.+++.+.++.. .       .|+. ....+|++.+|++++.+ +.++. +++.+++.
T Consensus        28 ~~~~~i~l~~~~~~~~~--~~~~~~~~~~~~~~~-~-------~Y~~-~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~   96 (357)
T PRK14809         28 DPDDLVKLSSNENPHGP--SPAAVEAIREAAERV-H-------SYPK-ASHADLTAALADRWDVSPEQVWLANGGDGALD   96 (357)
T ss_pred             CccceeEecCCCCCCCC--CHHHHHHHHHHHhhh-h-------cCCC-CCHHHHHHHHHHHhCCCcceEEECCCHHHHHH
Confidence            46689999998 66554  578888888776541 1       1211 12468999999999843 44555 55568888


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---CHH-HHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---DMD-SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---d~~-~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      .++++++++||.|+++.+++..........|..++.++..   +.+ +++++.+...        .+++|++.+++|++|
T Consensus        97 ~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~k~i~l~~p~NPTG  168 (357)
T PRK14809         97 YLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD--------GERIVYLTSPHNPTG  168 (357)
T ss_pred             HHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc--------CCcEEEEeCCCCCCC
Confidence            8999999999999999998876666667777777666532   111 1233222211        145666668889999


Q ss_pred             CccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          260 QIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      .+.+.+++.++++.+  ++++|+||+|+.....  +... ..  +...+..++++||||.+|.+|   ||+++++++++.
T Consensus       169 ~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~--~~~~-~~--~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~  243 (357)
T PRK14809        169 SEIPLDEVEALAERTDEETLVVVDEAYGEFAER--PSAV-AL--VEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADA  243 (357)
T ss_pred             cCCCHHHHHHHHHhCccCcEEEEechhhhccCC--chhH-HH--HhhCCCEEEEecchhHhcCcchhheeeecCHHHHHH
Confidence            999977777777654  7899999999865432  2111 11  112233578899999999777   999999999888


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      +......  +  +.++....++.++++.-....+.++.++++.+.+.+.|... .+    ++.+.++++.+.+       
T Consensus       244 ~~~~~~~--~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~----~~~g~f~~~~~~~-------  307 (357)
T PRK14809        244 YARVNTP--F--AASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-TW----ESAGNFVLAEVGD-------  307 (357)
T ss_pred             HHHhCCC--C--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc-cC----CCCCCEEEEECCC-------
Confidence            7654322  2  24566666666666421111234556666677777777542 22    3467788877631       


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                          ..++++.+ +++||.+.++.....     ++.+|+++.   +++++++++++|+++++
T Consensus       308 ----~~~~~~~l-~~~gv~v~~g~~f~~-----~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        308 ----ASAVAEAA-QERGVIVRDCTSFGL-----PECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             ----HHHHHHHH-HHCCEEEEECccCCC-----CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence                22566654 556999998754432     345999874   57999999999988764

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.90  E-value=1.4e-20  Score=189.96  Aligned_cols=294  Identities=16%  Similarity=0.217  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHHhhhCCC---CEE-EecccHHHHHhhhhhhccCCcEEEE-cCCchhHH-HhHhhhcCCeEEEecC-----
Q 011567          154 DVHLDCEARIAKFLGTP---DSI-LYSYGLSTMFSAIPCFCKKGDLIVA-DEGVHWGI-QNGLYLSRSTVVYFKH-----  222 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e---~~i-~~~sG~~a~~~ai~~~~~~gdiI~~-~~~~h~s~-~~g~~~s~~~v~~~~~-----  222 (483)
                      +...++++.+++++|.+   +.+ ++++|++++..++.++..++|.|++ +..+++.. ...++..|.++..++.     
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~  116 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEP  116 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCC
Confidence            57899999999999974   334 5589999999999998888775554 44444332 3556667777776654     


Q ss_pred             CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       223 ~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                      .|++++++.+++..        ..++|.+..+.+++|.+.|+++|.++|+++|+++|+|+++++|...         .++
T Consensus       117 ~d~~~l~~~l~~~~--------~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~---------~~~  179 (368)
T PRK13479        117 PDAAEVEAALAADP--------RITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIP---------IDI  179 (368)
T ss_pred             CCHHHHHHHHHhCC--------CCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcc---------ccc
Confidence            26778877765421        2456777777788999999999999999999999999988775321         223


Q ss_pred             CCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcCCceeec---------------CCCcHHHHHHHHHHHHHHhc
Q 011567          303 PVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSSGYVFS---------------ASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~~~~~fs---------------~~~~p~~~aaa~~al~~l~~  365 (483)
                      ...++|++++|++|++ |+.| ||++.++++++.+.....++.++               .+.+....++..++++.+.+
T Consensus       180 ~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~  259 (368)
T PRK13479        180 AELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE  259 (368)
T ss_pred             cccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            2234689999999987 5666 99999998887765433222110               12344555566677776643


Q ss_pred             C---cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          366 N---PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       366 ~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      .   ++..+++.++.+++++.|.++ |+.+..++  .+|. ..+.+......   +   ..++.+.+. ++||.+.+...
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~L~-~~gi~v~~g~~  331 (368)
T PRK13479        260 EGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAY---D---FKEFYERLK-EQGFVIYPGKL  331 (368)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCc---C---HHHHHHHHH-HCCEEEecCCC
Confidence            2   466788899999999999887 77764331  3443 44544321100   1   235666544 46999976532


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..      ...+|++....+|++|+++++++|+++++++
T Consensus       332 ~~------~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        332 TQ------VDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             CC------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            11      2459998877789999999999999988754

>PRK09105 putative aminotransferase; Provisional

Probab=99.90  E-value=7.8e-21  Score=191.36  Aligned_cols=316  Identities=14%  Similarity=0.125  Sum_probs=212.5

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      +.++++..+ +.++  .+|.+.+++.+.+...+        .|+... ..+|++.+++++|.+  +.++.+++++++..+
T Consensus        43 ~~~i~l~~~~~~~~--~~~~~~~a~~~~~~~~~--------~Y~~~~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~  111 (370)
T PRK09105         43 EGAVFLNANECPLG--PSPAARDAAARSAALSG--------RYDLEL-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYA  111 (370)
T ss_pred             CCcEEecCCCCCCC--CCHHHHHHHHHHHHHhc--------CCCCch-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHH
Confidence            456777776 4444  56899999888776422        233333 678999999999853  444556667899999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC--HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND--MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d--~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                      +.+++++||.|++++++|..+...++..|.+++.++..+  .-+++++.+. ..       +++++++..++|++|.+.+
T Consensus       112 ~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~-------~~~~v~l~nP~NPTG~~~~  183 (370)
T PRK09105        112 VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DP-------NAGLIYICNPNNPTGTVTP  183 (370)
T ss_pred             HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CC-------CCCEEEEeCCCCCCCcCcC
Confidence            999999999999999999999888898999988876431  1123333222 11       2456666667899999999


Q ss_pred             hHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhc
Q 011567          264 LDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLS  338 (483)
Q Consensus       264 L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~  338 (483)
                      .+++.++++.  +++++|+||+|...  +. +.......+.  .+..+++.||||++|..|   ||+++++++++.++..
T Consensus       184 ~~~l~~l~~~~~~~~~lIvDEaY~~f--~~-~~s~~~~~~~--~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~  258 (370)
T PRK09105        184 RADIEWLLANKPAGSVLLVDEAYIHF--SD-APSVVDLVAQ--RKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF  258 (370)
T ss_pred             HHHHHHHHHhCCCCcEEEEECchHHh--cc-CcchHHHHhh--CCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc
Confidence            8777777654  48999999999542  21 1111111111  222477899999999888   9999999999887654


Q ss_pred             CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          339 SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       339 ~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                       ..    .+.+.....++.++++......+.++.++++.+.+.+.|++. |+.+.. +.+.++.+.++.       +   
T Consensus       259 -~~----~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~-~~~~f~~~~~~~-------~---  321 (370)
T PRK09105        259 -GH----NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKCTP-SQANCFMVDVKR-------P---  321 (370)
T ss_pred             -CC----CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcCC-CCCcEEEEeCCC-------C---
Confidence             11    123445555555666432212345677888888999999886 777654 456666555521       1   


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ..++++.+++ +||.+... ++.     .++.+|+++.   +++++++++++|++++
T Consensus       322 ~~~l~~~L~~-~gI~v~~~-~~~-----~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        322 AKAVADAMAK-QGVFIGRS-WPI-----WPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             HHHHHHHHHH-CCcEEecC-CCC-----CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            2357776665 49998422 211     1345999985   6899999999998765

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.90  E-value=1.6e-20  Score=188.83  Aligned_cols=323  Identities=15%  Similarity=0.117  Sum_probs=215.3

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~a  185 (483)
                      .+++||..+ |.++  .++.+.+++.+.+... .       .|+... ..+|++.||++++.+ +.|+. +++.+++..+
T Consensus        22 ~~~i~l~~~~n~~~--~~~~~~~a~~~~~~~~-~-------~Y~~~~-~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~   90 (360)
T PRK07392         22 DAILDFSASINPLG--PPESVIAAIQSALSAL-R-------HYPDPD-YRELRLALAQHHQLPPEWILPGNGAAELLTWA   90 (360)
T ss_pred             ccEEEeCCcCCCCC--CCHHHHHHHHHHHHHh-h-------cCCCcC-HHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence            368999987 6655  4588888888777642 1       122222 358999999999753 33444 5556788888


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC-------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND-------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d-------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++++. ++|.|+++.+++..+...++..|.+++.++..+       ..+++++.+...        .++++++...+|++
T Consensus        91 ~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~nP~NPT  161 (360)
T PRK07392         91 GRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLT--------PNDGLLLNNPHNPT  161 (360)
T ss_pred             HHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhcc--------CCCEEEEeCCCCCC
Confidence            88875 678888999999999999999999988876531       234554443221        24566666779999


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.+.++|.++++++++ +|+||+|...........+....  +..+.-++++||||++|..|   ||+++++++++.+
T Consensus       162 G~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~--~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~  238 (360)
T PRK07392        162 GKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCL--AEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRW  238 (360)
T ss_pred             CCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHh--hcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHH
Confidence            999999999999999986 66699998654322111111111  12233588899999998666   9999999988887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      ......  +  +.+.+...++.++++.-.-.....+.++++.+.+.+.|+.++++.+.. +.++++++.+..        
T Consensus       239 ~~~~~~--~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~--------  305 (360)
T PRK07392        239 QQWRDP--W--PVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQG--------  305 (360)
T ss_pred             HhhCCC--C--CCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCC--------
Confidence            644322  2  345666666666664321112345667788888999998877877654 567777776632        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                        ...+++..++++.||.+.++.....  . .+..+||++.   +.++.+++.+++++++
T Consensus       306 --~~~~l~~~ll~~~gv~v~pg~~f~~--~-~~~~iRi~~~---~~~~~~~l~~al~~~~  357 (360)
T PRK07392        306 --SALQLQEKLLQQHRILIRDCLSFPE--L-GDRYFRVAVR---TEAENQRLLEALAAIL  357 (360)
T ss_pred             --CHHHHHHHHHhhCCEEEEeCCCCCC--C-CCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence              1235676667777999998754321  0 1245999985   3555666666666544

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.90  E-value=5.1e-21  Score=191.31  Aligned_cols=280  Identities=19%  Similarity=0.225  Sum_probs=193.5

Q ss_pred             ChHHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhhhcc--------------CCcEEEEcCCchhHHHhHhhhc
Q 011567          152 TIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------------KGDLIVADEGVHWGIQNGLYLS  213 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~~~~--------------~gdiI~~~~~~h~s~~~g~~~s  213 (483)
                      ..++..++.+.+++++|.+    +.+++++|++++..++.++..              .+++|+++...|.++..++...
T Consensus        36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~  115 (345)
T cd06450          36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL  115 (345)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHH
Confidence            3456666777778888864    677889999999988877642              2458999999999998888887


Q ss_pred             CCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc
Q 011567          214 RSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       214 ~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                      |.+++.++.     .|+++|++.+.+...+    ..++++|++....+++|.+.|+++|.++|++||+++++|++|+.+.
T Consensus       116 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~----~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~  191 (345)
T cd06450         116 DVKVRLVPVDEDGRMDPEALEAAIDEDKAE----GLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFL  191 (345)
T ss_pred             hcCeEEeeeCCCCCcCHHHHHHHHHHHHHC----CCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHH
Confidence            888877763     3788888888653221    1124566666667778999999999999999999999999999876


Q ss_pred             ccCC-CCccccccCCCCCceeEEEccccccccCC-C-ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          289 LGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       289 lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      +... ..+.  ..++  .++|.++.|++|+++++ | |++..+                        +.+..++++.+..
T Consensus       192 ~~~~~~~~~--~~~~--~~~d~~~~s~~K~l~~p~g~g~~~~~------------------------~~~~~~~l~~l~~  243 (345)
T cd06450         192 LPFPEPRHL--DFGI--ERVDSISVDPHKYGLVPLGCSAVLVR------------------------ALKLWATLRRFGR  243 (345)
T ss_pred             hhChhhHHH--hcCc--cccCEEEEchhHhhCCCcchHHHHHH------------------------HHHHHHHHHHHhH
Confidence            5321 1111  1111  35688888999988632 2 554433                        2223334444432


Q ss_pred             --CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567          366 --NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD  443 (483)
Q Consensus       366 --~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~  443 (483)
                        .++.+++..++.+++.+.|++++++.+..++.++++.+.+....    .......++.+.+.+++++++....+.   
T Consensus       244 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~----~~~~~~~~i~~~L~~~g~~~~~~~~~~---  316 (345)
T cd06450         244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSV----KLDELNYDLSDRLNERGGWHVPATTLG---  316 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcc----hhhHHHHHHHHHHHhcCCEEEEeeEEC---
Confidence              24678888899999999999988888776667888888875311    001223467776544434445432221   


Q ss_pred             cCCCCCceEEEccCCC-CHHHHHHHHHHHHH
Q 011567          444 KCRLPVGIRLFVSAAH-SEADLVKACESLKR  473 (483)
Q Consensus       444 ~~~~~~~lRi~~~~~~-t~edi~~~~~~l~~  473 (483)
                         .+..+|++++..+ |++|+++++++|++
T Consensus       317 ---~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         317 ---GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             ---CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence               1234999999875 99999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.5e-20  Score=189.66  Aligned_cols=321  Identities=18%  Similarity=0.170  Sum_probs=213.9

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEeccc-HHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYG-LSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG-~~a~~~  184 (483)
                      +.+++||..+ |.++  ..+.+.+++.+..... .       .|+.... .+|++.+|+++|.+ +.+++++| ++++..
T Consensus        35 ~~~~i~l~~~~~~~~--~~~~~~~al~~~~~~~-~-------~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~  103 (371)
T PRK05166         35 VPRIAKLGSNENPLG--PSPAVRRAFADIAELL-R-------LYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAV  103 (371)
T ss_pred             CcceEEcCCCCCCCC--CCHHHHHHHHHHHHHh-h-------cCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHH
Confidence            4578999998 5554  4578888887654331 1       1222222 37999999999854 44555554 578888


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++.++.++||.|++..+.|......++..|.+++.++.+     |++++++.+++          .+++|++...++++|
T Consensus       104 ~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~----------~~~~v~l~~p~NPtG  173 (371)
T PRK05166        104 ICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVAR----------APRMLMFSNPSNPVG  173 (371)
T ss_pred             HHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc----------CCCEEEEeCCCCCCC
Confidence            889999999999999999988888888889888877653     56777666543          145677778889999


Q ss_pred             CccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee-ccHHHHH
Q 011567          260 QIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVVD  333 (483)
Q Consensus       260 ~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~~~~  333 (483)
                      .+.|.+++.++++.  .++++|+||+|.....+........... ...+..|+++||||++|..|   ||++ +++++++
T Consensus       174 ~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~  252 (371)
T PRK05166        174 SWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLK-ARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVG  252 (371)
T ss_pred             CCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHh-hcCCCEEEEeechHhhhcchhheeeeecCCHHHHH
Confidence            99997666666553  4789999999987654321111111111 11123588999999998777   9965 5788888


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      .++.....  ++  .+.+...++.+++..-...++.++.++++.+.+.+.|++. |+.+. ++.++++++.+..      
T Consensus       253 ~~~~~~~~--~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~------  320 (371)
T PRK05166        253 LLDRVRTP--FN--VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARR------  320 (371)
T ss_pred             HHHHhccC--CC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC------
Confidence            77543322  22  3555555555555321112345667777888899999886 77654 4467777776521      


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                       +   ..++++.+++ +||.+.+...+.     .++.+||++.   +.++.+++.++|++++
T Consensus       321 -~---~~~l~~~l~~-~gi~v~p~~~~~-----~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        321 -P---ASAVAEALLR-QGVIVKPWKQPG-----FETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             -C---HHHHHHHHHH-CCeEEecCCCCC-----CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence             1   2356776665 599998764322     1345999996   6778888888887654

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.89  E-value=4.9e-21  Score=198.80  Aligned_cols=307  Identities=12%  Similarity=0.175  Sum_probs=197.2

Q ss_pred             HHHHHHHHhhhC--------C-CCEE-EecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC--
Q 011567          157 LDCEARIAKFLG--------T-PDSI-LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN--  223 (483)
Q Consensus       157 ~~l~~~La~~~g--------~-e~~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~--  223 (483)
                      .+|++.||++++        . ++.| +.+++++++..++.+++++||.|+++.++|......+. ..|.+++.++..  
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~  176 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSS  176 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCC
Confidence            456666666553        1 2344 44566688999999999999999999999998887776 478888887652  


Q ss_pred             -----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-C
Q 011567          224 -----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-R  294 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~  294 (483)
                           |++.++..++.....    ..++++|++..++|++|.+.+   +++|+++|++|++++|+||+|+..++.... .
T Consensus       177 ~~~~~~~~~le~a~~~a~~~----~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~  252 (496)
T PLN02376        177 DNFKLTVDAADWAYKKAQES----NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFV  252 (496)
T ss_pred             ccCcCCHHHHHHHHHHHHhc----CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcc
Confidence                 466776655432210    113566666677889999999   788999999999999999999876553211 1


Q ss_pred             cccccc-CCCCC----ceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH---
Q 011567          295 GLTEHC-GVPVD----KIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV---  362 (483)
Q Consensus       295 g~~~~~-~v~~~----~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~---  362 (483)
                      .+.+.. ..+..    +.-+++.||||.||.+|   ||+++ ++.+.+..+... .  |+ ..+.....++.+.++.   
T Consensus       253 si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~-~--~~-~vs~~~Q~a~~~~L~d~~~  328 (496)
T PLN02376        253 SVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS-S--FG-LVSSQTQLMLASMLSDDQF  328 (496)
T ss_pred             cHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh-h--cC-CCCHHHHHHHHHHhCChhH
Confidence            111111 00101    12355789999998766   99988 456666544332 1  22 1234444444334321   


Q ss_pred             Hhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc
Q 011567          363 LEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM  441 (483)
Q Consensus       363 l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~  441 (483)
                      +++ ..+.+++++++.+.+.+.|++. |+.+..+..+.++++.++...... .......++++.++++.||.+.++....
T Consensus       329 ~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~~~-~~~~~e~~l~~~ll~~~gV~v~pGs~F~  406 (496)
T PLN02376        329 VDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLRHLLRDR-NSFESEIELWHIIIDKVKLNVSPGSSFR  406 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEchhhhccC-CchhHHHHHHHHHHHcCCEEEeCccccC
Confidence            111 1234666777888888888875 777665556678888875321100 0111224577777777799999875432


Q ss_pred             cccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          442 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       442 ~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .   ..++.+||++.. .++++++.+++.|++++.+
T Consensus       407 ~---~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~  438 (496)
T PLN02376        407 C---TEPGWFRICFAN-MDDDTLHVALGRIQDFVSK  438 (496)
T ss_pred             C---CCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHH
Confidence            1   123569999864 5689999999999998864

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.89  E-value=7.8e-21  Score=188.63  Aligned_cols=304  Identities=16%  Similarity=0.155  Sum_probs=202.0

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEecccH-HHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYGL-STMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG~-~a~~~a  185 (483)
                      ++.++|+.+ |.+++   | ..+...+.+..|+           ... ..++++.+++++|.+ +.+++++|+ +++..+
T Consensus        17 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~y~-----------~~~-~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~   80 (330)
T TIGR01140        17 EDWLDFSTGINPLGP---P-VPPIPASAWARYP-----------DPE-YDELRAAAAAYYGLPAASVLPVNGAQEAIYLL   80 (330)
T ss_pred             hheeEccccCCCCCC---C-hhhcchHHHhhCC-----------Ccc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHH
Confidence            467999988 56555   2 2233233333332           223 488999999999964 667776666 455555


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC--
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP--  263 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~--  263 (483)
                      ..+ .++|+ |++..++|..+...+...|.+++.++  |++++++.+++           +++|++..+.+++|.+.+  
T Consensus        81 ~~~-l~~g~-vl~~~p~y~~~~~~~~~~g~~~~~~~--d~~~l~~~~~~-----------~~~v~i~~p~NPtG~~~~~~  145 (330)
T TIGR01140        81 PRL-LAPGR-VLVLAPTYSEYARAWRAAGHEVVELP--DLDRLPAALEE-----------LDVLVLCNPNNPTGRLIPPE  145 (330)
T ss_pred             HHH-hCCCe-EEEeCCCcHHHHHHHHHcCCEEEEeC--CHHHHHhhccc-----------CCEEEEeCCCCCCCCCCCHH
Confidence            444 45675 56667778788888888898988887  88888776532           335555666889999999  


Q ss_pred             -hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcC
Q 011567          264 -LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSS  339 (483)
Q Consensus       264 -L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~  339 (483)
                       +++|+++|++||+++|+||+|+.+...   ..+....+  ..+.+|+++|+||++|..|   ||+++++++++.+....
T Consensus       146 ~~~~l~~~a~~~~~~ii~De~y~~~~~~---~~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~  220 (330)
T TIGR01140       146 TLLALAARLRARGGWLVVDEAFIDFTPD---ASLAPQAA--RFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL  220 (330)
T ss_pred             HHHHHHHHhHhcCCEEEEECcccccCCc---cchhhHhc--cCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcC
Confidence             777889999999999999999765432   12222111  1244799999999999777   99999999988876544


Q ss_pred             CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 011567          340 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL  419 (483)
Q Consensus       340 ~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~  419 (483)
                      ..+    +.++...+++.+.++.-....+.+++++++.+.+.+.|++++.+.+. ++.+.++++.+++           .
T Consensus       221 ~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~-----------~  284 (330)
T TIGR01140       221 GPW----TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPD-----------A  284 (330)
T ss_pred             CCC----CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCC-----------H
Confidence            332    23455555555555422111346788889999999999887545554 3356677766531           2


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      .++++.+++ +||.+.++..+..   ..++.+|++++..  .++ ++++++|
T Consensus       285 ~~l~~~l~~-~gi~v~pg~~f~~---~~~~~iRi~~~~~--~~~-~~~~~~l  329 (330)
T TIGR01140       285 AALHEALAR-RGILIRDFDNFPG---LDPRYLRFALPTD--EEN-DRLEEAL  329 (330)
T ss_pred             HHHHHHHHH-CCEEEEECCCCCC---CCCCEEEEEecCH--HHH-HHHHHhh
Confidence            367777665 6999998765420   0124599998642  244 7777665

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.89  E-value=4e-21  Score=194.25  Aligned_cols=213  Identities=15%  Similarity=0.171  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...++|+++++++|.++++++++|++|+..++.++.++||.|+++...|.++..    .+...|.+++.++.+|++++
T Consensus        60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l  139 (390)
T PRK08133         60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW  139 (390)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHH
Confidence            35688999999999999999999999999999999999999999999888876553    34456888989988888888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          ++++|++|.+.+++|.+.|+++|+++|++||+++|+|++++.+....   .+    .   ..+|
T Consensus       140 ~~~i~~----------~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~---pl----~---~g~D  199 (390)
T PRK08133        140 RAAVRP----------NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ---PL----K---LGAD  199 (390)
T ss_pred             HHhcCc----------CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC---ch----h---hCCc
Confidence            877643          37899999999999999999999999999999999999987554321   11    1   2348


Q ss_pred             EEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          309 IVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++++|++|.+++    .||+++++++.++.+.....  ..+..++|..+..++..++.+   ..+.++..++...+.+.|
T Consensus       200 ivv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~--~~g~~~~~~~a~~~l~gl~tl---~~R~~~~~~~a~~la~~L  274 (390)
T PRK08133        200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR--TAGPTLSPFNAWVFLKGLETL---SLRMEAHSANALALAEWL  274 (390)
T ss_pred             EEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHH--HhCCCCCHHHHHHHHcccchH---HHHHHHHHHHHHHHHHHH
Confidence            999999999975    35888888877665432211  123346777766666665544   346677778888888888


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+++
T Consensus       275 ~~~p~v  280 (390)
T PRK08133        275 EAHPGV  280 (390)
T ss_pred             HhCCCe
Confidence            877654

>PRK05839 hypothetical protein; Provisional

Probab=99.89  E-value=1.4e-20  Score=190.08  Aligned_cols=330  Identities=15%  Similarity=0.111  Sum_probs=204.9

Q ss_pred             CeeEEEeecCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEeccc-HHHH
Q 011567          108 GKEVVNFASAN-YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYG-LSTM  182 (483)
Q Consensus       108 G~~~id~~s~~-~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG-~~a~  182 (483)
                      |++++||..+. .++  ..+.+.+++.+..... ...+.   ..|..++.+.+++.+++..|   .++.|+.++| .+++
T Consensus        23 ~~~~i~l~~~~p~~~--~~~~~~~a~~~~~~~~-~~Y~~---~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al   96 (374)
T PRK05839         23 EYKGLDLTIGEPQFE--TPKFIQDALKNNAHLL-NKYPK---SAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL   96 (374)
T ss_pred             CCCeEEcCCCCCCCC--CCHHHHHHHHHHhhcc-CCCCC---CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence            77899999973 344  3477777777655431 11111   22344555555666666556   2344555555 5677


Q ss_pred             Hhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC-----HHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          183 FSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       183 ~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ..++.++.  ++||.|+++.+++..+...+...|.+++.++.+.     ++..+..+    .       .+++|++...+
T Consensus        97 ~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~----~-------~~k~v~i~nP~  165 (374)
T PRK05839         97 FNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKEL----Q-------EVDLVILNSPN  165 (374)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhhh----c-------cccEEEEeCCC
Confidence            77777663  6899999999999988888888899988886531     11111111    1       25666666888


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc---CCCCCceeEEEccccccccCCC---ceee
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC---GVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~---~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      |++|.+.+   +++|+++|++||+++|+||+|.....+.....+....   +....+.-|+++||||.++.+|   ||++
T Consensus       166 NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii  245 (374)
T PRK05839        166 NPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIA  245 (374)
T ss_pred             CCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEe
Confidence            99999988   7888899999999999999998643221100111100   0101123588899999997666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      +++++++.++.......++  .+.....++.+++..-....+.++.++++.+.+.+.|    ++.  .+..+.++++.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~  317 (374)
T PRK05839        246 GDASILKKYKAYRTYLGCA--SPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVD  317 (374)
T ss_pred             cCHHHHHHHHHHHhhcCCC--CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCC
Confidence            9999988775442221222  2333344444344211111235666666666666654    322  2346777777763


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      +           ..+++.++++++||.+.++.+...+.. .++.+||++.  .++++++++++.|++++.
T Consensus       318 ~-----------~~~~~~~l~~~~gi~v~pg~~f~~~~~-~~~~iRis~~--~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        318 N-----------DEEFTKKLYQNEGIKVLPGSFLGRNGI-GKGYVRIALV--YDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             C-----------hHHHHHHHHHHCCEEEeCchhhCCCCC-CCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence            1           125677777667999998754322111 1355999985  479999999999988763

>PLN02651 cysteine desulfurase

Probab=99.89  E-value=4.5e-21  Score=193.02  Aligned_cols=311  Identities=18%  Similarity=0.149  Sum_probs=206.0

Q ss_pred             CChHHHHHHHHHHHh-cCCCCC-CCCCcccChHHHHHHHHHHHhhhCCC-C-EEEecccHHHHHhhhhh----hccCCcE
Q 011567          124 GHEKLLESCTSALEK-YGVGSC-GPRGFYGTIDVHLDCEARIAKFLGTP-D-SILYSYGLSTMFSAIPC----FCKKGDL  195 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~-~g~g~~-~~~~~~g~~~~~~~l~~~La~~~g~e-~-~i~~~sG~~a~~~ai~~----~~~~gdi  195 (483)
                      .++++.+++.+.+.. ++.... +........+...++++.+++++|.+ + .++.++|++++..++.+    +.++||.
T Consensus        11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~   90 (364)
T PLN02651         11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKH   90 (364)
T ss_pred             CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCE
Confidence            467888988888765 332111 00000112356788999999999965 3 44556777887666544    3578999


Q ss_pred             EEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHH
Q 011567          196 IVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDEL  267 (483)
Q Consensus       196 I~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l  267 (483)
                      |++....|.++....   ...|.+++.++.+     |++++++.+++          .++++++..+.+++|.+.|+++|
T Consensus        91 vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----------~t~lv~v~~~~n~tG~~~~l~~I  160 (364)
T PLN02651         91 VITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP----------DTALVSVMAVNNEIGVIQPVEEI  160 (364)
T ss_pred             EEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC----------CcEEEEEECCCCCceecccHHHH
Confidence            999998888765443   3456777666542     56677766632          26789999999999999999999


Q ss_pred             HHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCC--ce--
Q 011567          268 IRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSS--GY--  342 (483)
Q Consensus       268 ~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~--~~--  342 (483)
                      .++|++||+++++|++|+.|.+.         +++...++|++++|.+|.+|+.| |++..+++..+.+.....  ++  
T Consensus       161 ~~~~~~~g~~~~vD~a~~~g~~~---------~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~  231 (364)
T PLN02651        161 GELCREKKVLFHTDAAQAVGKIP---------VDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQER  231 (364)
T ss_pred             HHHHHHcCCEEEEEcchhhCCcc---------cCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccC
Confidence            99999999999999999976542         23333456999999999877665 777666654433321111  10  


Q ss_pred             -eecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhcc-CCCceeecC--CC---CCEEEEEecCCCCCchh
Q 011567          343 -VFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSD-IHGLSIASN--PE---SPIVFLILEKSTGSMKN  414 (483)
Q Consensus       343 -~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~--~~---~~i~~l~l~~~~~~~~~  414 (483)
                       ...++.|...+.+..++++++.+. +.+.++.++..+++.+.|++ ++++++.++  +.   .+++.+.++...     
T Consensus       232 ~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-----  306 (364)
T PLN02651        232 GRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE-----  306 (364)
T ss_pred             CccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCC-----
Confidence             123345666667777888887643 45678888899999999875 578888763  11   337777774211     


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccc---------cCC-----CCCceEEEccCCCCHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCR-----LPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~-----~~~~lRi~~~~~~t~edi~  465 (483)
                          ..+++.. |.+  |.++.+..+...         ...     ..+.+|++++..+|++|||
T Consensus       307 ----~~~~~~~-L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        307 ----GESLLMG-LKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             ----HHHHHHH-hCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence                2245554 443  777654422110         000     1245999999999999985

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=2.9e-20  Score=186.33  Aligned_cols=321  Identities=20%  Similarity=0.230  Sum_probs=210.8

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~  184 (483)
                      +++++||+.+ +.++.  ++.+.+++.+.+... .       .|.... ..+|++++|++++.+ +.+++ +++++++..
T Consensus        18 ~~~~~~l~~~~~~~~~--p~~~~~a~~~~~~~~-~-------~Y~~~~-~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~   86 (354)
T PRK06358         18 KNMILDFSANINPLGV--PESLKQAITENLDKL-V-------EYPDPD-YLELRKRIASFEQLDLENVILGNGATELIFN   86 (354)
T ss_pred             ccceEEecCCCCCCCC--CHHHHHHHHHHHHhh-h-------cCCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHH
Confidence            3457999887 55555  588888888876542 1       122222 468999999999854 34544 555688888


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC-----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++++ .+ +.|+++.+++..+...++..|.+++.++.++     ++  ++.++....       ..+++++...+|++|
T Consensus        87 ~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d--~~~~~~~~~-------~~~~v~~~~P~NPtG  155 (354)
T PRK06358         87 IVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN--EIVLEEIKE-------EIDLVFLCNPNNPTG  155 (354)
T ss_pred             HHHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc--HHHHHhhcc-------CCCEEEEeCCCCCCC
Confidence            88876 44 4577788888888888888888888776431     22  222332221       144544445588999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec-cHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG-SARVV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~  332 (483)
                      .+.+   +++|+++|++|++++|+||+|...............  ++..+.-|+++||||.+|..|   ||+++ ++.++
T Consensus       156 ~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~  233 (354)
T PRK06358        156 QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINY--LENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA  233 (354)
T ss_pred             CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHh--ccCCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence            9988   788999999999999999999866543211111111  222234588899999998666   99987 46777


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.+......  +  +.+.....++.++++.-....+.++.++++.+.+.+.|++.+++.+.. +.++++++.+++     
T Consensus       234 ~~~~~~~~~--~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~g~f~~~~~~~-----  303 (354)
T PRK06358        234 EKLLQMREP--W--SINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK-PSVNFIFFKLEK-----  303 (354)
T ss_pred             HHHHHhCCC--C--cchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC-CcceEEEEEcCc-----
Confidence            777554332  2  234444445555553211113456777888899999998877776654 466777777632     


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                        .    .++++.+++ +||.+.+......   ..++.+||++   -++++.++++++|++++
T Consensus       304 --~----~~~~~~l~~-~gI~v~~~~~f~~---~~~~~iRls~---~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        304 --P----IDLRKELLK-KGILIRSCSNYRG---LDENYYRVAV---KSREDNKKLLKALEVIL  353 (354)
T ss_pred             --h----HHHHHHHHH-CCeEEEECCCCCC---CCCCEEEEEe---CCHHHHHHHHHHHHHHh
Confidence              1    357776665 5999998754310   0123499998   57899999999998764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.89  E-value=1.3e-20  Score=194.82  Aligned_cols=308  Identities=15%  Similarity=0.144  Sum_probs=201.7

Q ss_pred             HHHHHHHHhhhC---------CCCEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC--
Q 011567          157 LDCEARIAKFLG---------TPDSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN--  223 (483)
Q Consensus       157 ~~l~~~La~~~g---------~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~--  223 (483)
                      .+|++.||++++         .++.|+. +++.+++..++.+++++||.|+++.++|..+...+. ..|.+++.++..  
T Consensus        89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~  168 (468)
T PLN02450         89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSS  168 (468)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCc
Confidence            456666666653         2233555 555688889999999999999999999988877777 478888877642  


Q ss_pred             -----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-C
Q 011567          224 -----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-R  294 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~  294 (483)
                           |++.+++.+++...    ...++++|++..++|++|.+.+   +++|+++|++|++++|+||+|+...+.... .
T Consensus       169 ~~~~~~~~~le~~~~~~~~----~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~  244 (468)
T PLN02450        169 NGFQITESALEEAYQQAQK----LNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV  244 (468)
T ss_pred             cCCcCCHHHHHHHHHHHHh----cCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcc
Confidence                 45777777655321    1113555555567889999988   788899999999999999999865543210 0


Q ss_pred             cccccc------CCCCCceeEEEccccccccCCC---ceeeccHH-HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-
Q 011567          295 GLTEHC------GVPVDKIDIVTAAMGHALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-  363 (483)
Q Consensus       295 g~~~~~------~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~-~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-  363 (483)
                      ...+..      +.++.+.-++++||||.+|..|   ||++++++ +.+.+.... .  ++. .+.....++.+.|+.- 
T Consensus       245 s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~-~--~~~-~s~~~Q~a~~~~L~~~~  320 (468)
T PLN02450        245 SVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS-S--FGL-VSSQTQYLLSALLSDKK  320 (468)
T ss_pred             cHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh-h--cCC-CCHHHHHHHHHHhCCch
Confidence            111111      1112334688899999998666   99998754 555544331 2  221 2444444444444321 


Q ss_pred             --h-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567          364 --E-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS  440 (483)
Q Consensus       364 --~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~  440 (483)
                        . ...+.+++++++.+.+.+.|++. |+++..+..+.++++.++.....  .......++...++++.||.+.++...
T Consensus       321 ~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~flwi~l~~~~~~--~~~~~~~~l~~~ll~~~gV~v~PG~~f  397 (468)
T PLN02450        321 FTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGLFCWVDMRHLLKS--NTFEAEMELWKKIVYEVKLNISPGSSC  397 (468)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceEEEEEEchHhcCc--CCchHHHHHHHHHHHhCCEEEeCcccc
Confidence              0 01235777888888999999886 87766554566888887532111  011112356677777789999987543


Q ss_pred             ccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          441 MLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       441 ~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ..   ..++.+|++++. .+++++++++++|++++.+..
T Consensus       398 ~~---~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        398 HC---TEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             CC---CCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence            21   113459999875 578999999999999987655

>PRK05968 hypothetical protein; Provisional

Probab=99.89  E-value=3.3e-21  Score=194.82  Aligned_cols=285  Identities=19%  Similarity=0.185  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||+++|+++|.+.++++++|+.|+..++.++.++||.|++....|.+..    ..+...|.++..++.+|+++++
T Consensus        63 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~  142 (389)
T PRK05968         63 PTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVA  142 (389)
T ss_pred             hhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHH
Confidence            457899999999999999999999999999999999999999888888777643    3455568888888888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+.           ++++|++|.+.++.+.+.|+++|.++|++||+++|+|++++.+....   .+ +      ..+|+
T Consensus       143 ~~i~-----------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~---p~-~------~g~Di  201 (389)
T PRK05968        143 KALP-----------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR---PI-T------LGVDL  201 (389)
T ss_pred             Hhcc-----------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC---ch-h------cCCcE
Confidence            7652           25788889988888999999999999999999999999997664321   11 1      23489


Q ss_pred             EEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.+++    .||++++++++++.++.....+ ++..++|+.++.++..|+.+   +...++-.++++.+.+.|+
T Consensus       202 vv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~-~g~~~~~~~A~~~l~~L~tl---~~r~~~~~~~a~~la~~L~  277 (389)
T PRK05968        202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY-LGAKLSPFEAWLLLRGLRTL---PLRMKAHEASALEIARRLK  277 (389)
T ss_pred             EEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh-CCCCCChHHHHHHHcccCcH---HHHHHHHHHHHHHHHHHHH
Confidence            99999999974    3688889988887766432222 23457788888777777655   4467777888999999999


Q ss_pred             cCCCceeecC------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-----------
Q 011567          386 DIHGLSIASN------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-----------  442 (483)
Q Consensus       386 ~~~~~~i~~~------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-----------  442 (483)
                      +++++..+..            ..+.++.+.++.        .....++++. |+..++.++-+...++           
T Consensus       278 ~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--------~~~~~~f~~~-L~~~~~~~s~G~~~slv~p~~~~~~~~  348 (389)
T PRK05968        278 AHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE--------GIDVRAFADA-LKLFRLGVSWGGHESLVVPAEVVLQQK  348 (389)
T ss_pred             hCCCccEEECCCCCCChHHhCCCCceEEEEEECC--------HHHHHHHHHh-CCccEEecCCCCCCceeeeCccccccc
Confidence            8887643321            124588888742        1124466664 4444444443322220           


Q ss_pred             --c----cCCC-CCceEEEccCCCCHHHHHHHHHHHH
Q 011567          443 --D----KCRL-PVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       443 --~----~~~~-~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                        .    .... +.-||+++....+++=++.+-.+|+
T Consensus       349 ~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~  385 (389)
T PRK05968        349 AQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALA  385 (389)
T ss_pred             CCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence              0    1111 2249999988655554444444444

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.89  E-value=2.7e-20  Score=188.63  Aligned_cols=332  Identities=16%  Similarity=0.131  Sum_probs=215.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhH
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG  205 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s  205 (483)
                      ..+.++..+++..-..+       |+...-..+|++.+++++|.+.++.+++|++|+..++.+++++||.|+ ..+.+.+
T Consensus        32 ~ams~~~~~a~~~gd~~-------Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~  103 (431)
T cd00617          32 GAMSDYQWAAMMLGDEA-------YAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTVP-SNMHFDT  103 (431)
T ss_pred             HHHHHHHHHHHHhCCCc-------cCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccc
Confidence            35666666666542222       333333578999999999999999999999999999999999999874 5555556


Q ss_pred             HHhHhhhcCCeEEEecC---------------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-CCccC---hHH
Q 011567          206 IQNGLYLSRSTVVYFKH---------------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIAP---LDE  266 (483)
Q Consensus       206 ~~~g~~~s~~~v~~~~~---------------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G~i~~---L~~  266 (483)
                      +...+...|.+++.++.               -|+++|++.+.+..      +..+++|+++...|.+ |.+.+   +++
T Consensus       104 ~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~------~~~~~~I~v~~p~N~~gG~~~s~~~l~~  177 (431)
T cd00617         104 TRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG------AENIPYIVLTITNNTAGGQPVSMANLRE  177 (431)
T ss_pred             hHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCccc------CCCccEEEEECCcCCCCCccCCHHHHHH
Confidence            66677788877665432               26788888876431      1136777777666654 88876   568


Q ss_pred             HHHHHHHcCcEEEEeCcccccc-c-------cCCCCcccc----ccCCCCCceeEEEcccccccc-CCCceeeccH-HHH
Q 011567          267 LIRLKEKYRFRVFLDESNSFGV-L-------GRSGRGLTE----HCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA-RVV  332 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~-l-------g~~G~g~~~----~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~-~~~  332 (483)
                      |.++|++||++||.|+++..+- +       |..+..+.+    .+..    .|..+.|+.|..+ ..||++++++ +++
T Consensus       178 i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~----sd~~~mS~~K~~~~~~GG~i~~~d~~l~  253 (431)
T cd00617         178 VRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSY----ADGCTMSAKKDGLVNIGGFLALRDDELY  253 (431)
T ss_pred             HHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhcc----CCEEEEEeecCCCCccceEEEeCcHHHH
Confidence            8999999999999999976431 1       111121111    1111    2666667778765 4589999986 588


Q ss_pred             HHHHhcC---CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          333 DHQRLSS---SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       333 ~~~~~~~---~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +.++...   .++...+++++...++...+|+...+ .+..+...++.+++.+.|.+. |+++..+.++..+++....-.
T Consensus       254 ~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~  331 (431)
T cd00617         254 EEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFL  331 (431)
T ss_pred             HHHHHhccccCCccccccccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhc
Confidence            8776432   22322234555555544335543222 233444455668899999987 999887777888888764311


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecc------cccccCC--CCCceEEEccC-CCCHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKR------SMLDKCR--LPVGIRLFVSA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~------~~~~~~~--~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      +....+.-..+.++.+++++.||.+.-...      +.-....  ..+.+|+.++- ..|.+++|.+++++..+.++
T Consensus       332 ~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         332 PHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             CCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence            100001112557787888888998653221      1111111  12569998876 67999999999999988765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.89  E-value=2.9e-21  Score=183.52  Aligned_cols=324  Identities=19%  Similarity=0.250  Sum_probs=218.1

Q ss_pred             EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhcc
Q 011567          112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK  191 (483)
Q Consensus       112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~  191 (483)
                      +||.|-|+-|  .+|++.+++.++-.-.   .    ..||..+...++++.+++.+|.+.++|+.||++||..++.+.++
T Consensus         2 ~~f~SDn~~g--~~~~m~eam~~a~~~~---~----~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~   72 (342)
T COG2008           2 IDFRSDNVAG--PTPEMREALAAANAVG---D----DVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ   72 (342)
T ss_pred             CccccCccCC--CCHHHHHHHHhccccC---C----CCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC
Confidence            5777777766  4699999887654321   1    26899999999999999999998888889999999999999999


Q ss_pred             CCcEEEEcCCchhHHHh--Hhhh-c-CCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          192 KGDLIVADEGVHWGIQN--GLYL-S-RSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       192 ~gdiI~~~~~~h~s~~~--g~~~-s-~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                      |+..|++.+..|-...+  ++.. + +.++...+-+    ++++++..+...+.   .. .++..++.+...+..|.+.|
T Consensus        73 ~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~---~~-~~~~~~~~e~~~te~GtVy~  148 (342)
T COG2008          73 PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDI---HH-APTPLAVLENTATEGGTVYP  148 (342)
T ss_pred             CCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCc---cc-CCCceEEEeeccCCCceecC
Confidence            99999999999976653  2332 2 2344444422    68888887765211   11 13556666666668899998


Q ss_pred             ---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcC
Q 011567          264 ---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSS  339 (483)
Q Consensus       264 ---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~  339 (483)
                         |++|.++|++||+.|++|.+.=+-.+-.-|.-..+   + ...+|++..+++|.++.++ ..++++.+.++..+...
T Consensus       149 l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~---~-~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~r  224 (342)
T COG2008         149 LDELEAISAVCKEHGLPLHMDGARLANALVALGVALKT---I-KSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWR  224 (342)
T ss_pred             HHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHH---H-HhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHH
Confidence               67888999999999999987522222111111111   1 1446899999999998665 55788988877654322


Q ss_pred             C--ceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH--HHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          340 S--GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN--TAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       340 ~--~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~--~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      .  +-.++-  .-+.+++....|   +++-.+.....+|  +.+|.+.|...+|+++..+++++++++.+++..      
T Consensus       225 K~~Ggl~~k--~r~laA~~~~~l---~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~------  293 (342)
T COG2008         225 KRAGGLMRK--ARFLAAQGLYAL---EDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESA------  293 (342)
T ss_pred             HHhcccHhh--hhHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHH------
Confidence            1  112221  234444444444   3332334444444  999999999778999998889999999985321      


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .. ...... .+...|+++....          ..+|+..+...|++||++++..+++++
T Consensus       294 i~-~l~~~~-~~~~~~~~~~~~~----------~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         294 IE-ALRLAG-ALFYRGVLIGAHG----------EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             HH-HHHhhc-hhheeeeeccCCC----------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            11 011111 1223355554332          128999999999999999999998764

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.89  E-value=1e-19  Score=185.07  Aligned_cols=328  Identities=14%  Similarity=0.160  Sum_probs=213.9

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEecccH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYGL  179 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~sG~  179 (483)
                      +..++||+.++. .+...+.+.+++.+.++......    ..|+......++++.++++++        .++.+++++++
T Consensus        32 ~~~~~~l~~g~p-~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~  106 (394)
T PRK06836         32 ADNVFDFSLGNP-SVPPPAAVKEALRELAEEEDPGL----HGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAA  106 (394)
T ss_pred             CCCeEEecCcCC-CCCCCHHHHHHHHHHHhcCCcCc----ccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChH
Confidence            346789988753 23345778888877766421111    123333334566677777663        23455567777


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +++..++++++++||.|+++.+++......++..|.+++.++.+      |++++++.+..          ++++|++.+
T Consensus       107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~----------~~~~v~~~~  176 (394)
T PRK06836        107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP----------KTKAVIINS  176 (394)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc----------CceEEEEeC
Confidence            89999999999999999999998888877778788888887642      46666665532          256677777


Q ss_pred             ccCCCCCccC---hHHHHHHHHH------cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567          254 VYQNSGQIAP---LDELIRLKEK------YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k------~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      +++++|.+.|   +++|+++|++      ||+++|+||+|.....+.  .........  .+..++++|+||.+|.+|  
T Consensus       177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~--~~~~i~~~S~SK~~~~pGlR  252 (394)
T PRK06836        177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG--AEVPYIFKY--YDNSIVVYSFSKSLSLPGER  252 (394)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC--CCCCChHHc--cCcEEEEecchhhccCccee
Confidence            8899999988   6778888999      899999999998655432  111111111  123788999999998666  


Q ss_pred             -ceeeccHHHHHHHH------hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          323 -GFCTGSARVVDHQR------LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       323 -G~i~~~~~~~~~~~------~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                       ||+++++++.+..+      .......+ ...++....++...+   ++ ....+.++++.+.+.+.|++. |+.+..+
T Consensus       253 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l---~~-~~~~~~~~~~r~~l~~~L~~~-g~~~~~~  326 (394)
T PRK06836        253 IGYIAVNPEMEDADDLVAALVFANRILGF-VNAPALMQRVVAKCL---DA-TVDVSIYKRNRDLLYDGLTEL-GFECVKP  326 (394)
T ss_pred             eEEEecCHHHhhhHHHHHHHHHHhhcccc-ccCCHHHHHHHHHHh---CC-hHHHHHHHHHHHHHHHHHHhC-CCEeecC
Confidence             99998877643211      11111011 122444434333333   22 234566777888888888886 7776655


Q ss_pred             CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+.++++.++..      +   ..++++. +.++||.+.+......     +..+||++.  .++++++++++.|++++
T Consensus       327 ~gg~~~~~~~~~~------~---~~~~~~~-l~~~gv~v~~g~~f~~-----~~~iRi~~~--~~~~~~~~~i~~l~~~l  389 (394)
T PRK06836        327 QGAFYLFPKSPEE------D---DVAFCEK-AKKHNLLLVPGSGFGC-----PGYFRLSYC--VDTETIERSLPAFEKLA  389 (394)
T ss_pred             CceEEEEEeCCCC------C---HHHHHHH-HHhCCEEEECchhcCC-----CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence            4566777666321      1   2245654 4556999988654321     345999997  58999999999999988


Q ss_pred             HH
Q 011567          476 AV  477 (483)
Q Consensus       476 ~~  477 (483)
                      ++
T Consensus       390 ~~  391 (394)
T PRK06836        390 KE  391 (394)
T ss_pred             HH
Confidence            65

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=2e-20  Score=186.12  Aligned_cols=302  Identities=15%  Similarity=0.148  Sum_probs=200.7

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccH-HHHHh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGL-STMFS  184 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~-~a~~~  184 (483)
                      .+++||++| |++|.+..+ +.   ...+.+|.             +...+|++.||+++|..  +.|+.++|+ +++..
T Consensus        24 ~~~i~ls~Nenp~~~~~~~-~~---~~~~~~Yp-------------~~~~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~   86 (339)
T PRK06959         24 DAWLDLSTGINPHGYPVPP-VP---ADAWRRLP-------------EDDDGLAACAARYYGAPDAAHVLPVAGSQAAIRA   86 (339)
T ss_pred             hhhceeccCCCCCCCCCCC-CC---HHHHHhCC-------------CchHHHHHHHHHHhCCCCcccEEECcCHHHHHHH
Confidence            468999999 999884222 21   13344442             22278999999999974  466666665 56554


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      + ..+.++|+ |++..+++..+...++..|.+++.++.++ +.+    .+   .      ...++++.| +|++|.+.+.
T Consensus        87 l-~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~----~~---~------~~~v~l~nP-nNPTG~~~s~  149 (339)
T PRK06959         87 L-PALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA-DTL----PA---A------LTHLIVVNP-NNPTAERLPA  149 (339)
T ss_pred             H-HHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc-hhc----cc---c------CCEEEEeCC-CCCCCCCCCH
Confidence            4 44567787 66688899888889999999988876543 111    11   1      124455554 7899999995


Q ss_pred             HHH---HHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhc
Q 011567          265 DEL---IRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLS  338 (483)
Q Consensus       265 ~~l---~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~  338 (483)
                      +++   ++.|++++.++|+||+|..+...   ..+....  . .+.-++++||||++|..|   ||+++++++++.++..
T Consensus       150 ~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~--~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~  223 (339)
T PRK06959        150 ARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHT--D-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDA  223 (339)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhcc--C-CCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHh
Confidence            555   45567889999999999864321   1121111  1 122478899999999878   9999999999988765


Q ss_pred             CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          339 SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       339 ~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                      ...+  +  .+.....++.++|+.-....+.++.++++.+++.+.|+++ |+.+.  +.+.++++.+.        +   
T Consensus       224 ~~~~--~--vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--------~---  285 (339)
T PRK06959        224 LGAW--T--VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--------R---  285 (339)
T ss_pred             cCCC--C--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--------C---
Confidence            4433  2  3455566666666432222356788888999999999886 77654  23445555542        1   


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ..++.+.++ ++||+++....        ++.+||++.  .+++|+++++++|+++++.+.
T Consensus       286 ~~~l~~~l~-~~GI~vr~~~~--------~~~lRisi~--~~~~e~~~l~~al~~~~~~~~  335 (339)
T PRK06959        286 AAALHAALA-RRGIWTRYFAP--------PPSVRFGLP--ADEAEWQRLEDALAECVPTLA  335 (339)
T ss_pred             HHHHHHHHH-hCCeEEEECCC--------CCeEEEECC--CCHHHHHHHHHHHHHHHHHHh
Confidence            235666544 56999974311        246999974  467899999999998877653

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=3.5e-20  Score=187.16  Aligned_cols=323  Identities=15%  Similarity=0.164  Sum_probs=208.6

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhhCC---------CCEEEeccc
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLGT---------PDSILYSYG  178 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~g~---------e~~i~~~sG  178 (483)
                      +.++++.++.+ .+..+|.+.+++.+.+.... ..      .|.. .-..+|++.||++++.         ++.|+.++|
T Consensus        28 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~G   99 (374)
T PRK02610         28 IQLDRLDTNEF-PYDLPPDLKQKLAWLYQQGIESN------RYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNG   99 (374)
T ss_pred             cceeEecCCCC-CCCCCHHHHHHHHHHHhhccccc------CCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCC
Confidence            45899998833 33355899999988776511 11      1211 2246788888888762         133555554


Q ss_pred             -HHHHHhhhhhhccCCc-EEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          179 -LSTMFSAIPCFCKKGD-LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       179 -~~a~~~ai~~~~~~gd-iI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                       .+++..++.+++.++| .|+++.+++..+...++..|.+++.++..      |+++|++.+++....      ++++|+
T Consensus       100 a~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~------~~k~i~  173 (374)
T PRK02610        100 SDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNP------PVRVVF  173 (374)
T ss_pred             hHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCC------CceEEE
Confidence             5777777777777775 89999999999998899999998887632      567777776542111      256666


Q ss_pred             EecccCCCCCccChHHHHHHHH-HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          251 VEAVYQNSGQIAPLDELIRLKE-KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~-k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      +.+.+|++|...+.+++.++.+ .+++++|+||+|.... +   ......  +...+.-|+++||||++|.+|   ||++
T Consensus       174 l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~-~---~~~~~~--~~~~~~~ivi~SfSK~~g~~GlRiG~~v  247 (374)
T PRK02610        174 VVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFS-Q---TTLVGE--LAQHPNWVILRTFSKAFRLAAHRVGYAI  247 (374)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccC-c---cchHHH--HhcCCCEEEEEecchhccCcccceeeee
Confidence            6567899999999655555543 1489999999997542 1   111111  111122477899999998777   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      +++++++.+......  ++  .+.+...++.++++..+...+.+++..+..+.+.+.|++++++.+. +..++++++.++
T Consensus       248 ~~~~l~~~l~~~~~~--~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~  322 (374)
T PRK02610        248 GHPELIAVLEKVRLP--YN--LPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLS  322 (374)
T ss_pred             cCHHHHHHHHHhcCC--CC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCC
Confidence            999999887654322  22  3455555555555432221122333444456677788776676654 456778888774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ...        ...++++.+ .++||.+.+.          ++.+||++.   +.+++++++++|++++.++
T Consensus       323 ~~~--------~~~~~~~~l-~~~gi~v~~~----------~~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        323 QDA--------ALAALHQAL-KAQGTLVRHT----------GGGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             CCC--------CHHHHHHHH-HHCCEEEEeC----------CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence            321        123566654 4569998642          134999985   4678999999999887653

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.89  E-value=2.5e-20  Score=190.50  Aligned_cols=337  Identities=14%  Similarity=0.112  Sum_probs=209.1

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C---CCCEEEecccH-
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G---TPDSILYSYGL-  179 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g---~e~~i~~~sG~-  179 (483)
                      |+.++|+..++. .+..+|.+.+++.+.+++.....  .-..|+...-..+|++.+|+++    |   .++.|+.++|+ 
T Consensus        33 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         33 EAKIIRLGIGDV-TQPLPPAVIEAMHKAVDEMGTAE--TFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CCceEEecCcCC-CCCCCHHHHHHHHHHHhcccccC--CccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            456899998743 23346888999988887632100  0011222222356677777764    3   23456665555 


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEecCCCHHHHHHHHHHhhhhhhhccCccEE
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST-----------VVYFKHNDMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      +++..+ ..+..+||.|+++.+++..+...++..|.+           ++.++.+.-+.++..+.+  .       .+++
T Consensus       110 ~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--~-------~~k~  179 (409)
T PRK07590        110 CDTGNI-LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE--E-------KVDI  179 (409)
T ss_pred             HHHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc--c-------CceE
Confidence            666554 455689999999999999888888888875           666654311111111111  1       2556


Q ss_pred             EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC--
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G--  322 (483)
                      |++...+|++|.+.+   +++|+++|++||++||+||+|+......  .-......++. .+..|+++||||++|.+|  
T Consensus       180 i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlR  257 (409)
T PRK07590        180 IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDP--SLPHSIYEIEGARECAIEFRSFSKTAGFTGTR  257 (409)
T ss_pred             EEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCC--CCCcchhhCCCcccceEEEecCccccCCcCce
Confidence            666677899999998   6788889999999999999998654322  11111112221 123577899999998777  


Q ss_pred             -ceeeccHHHHHHH-----------HhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCC
Q 011567          323 -GFCTGSARVVDHQ-----------RLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       323 -G~i~~~~~~~~~~-----------~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                       ||+++++++++.+           ........+. +.+.+...++.++++.  .....+.++.++++.+.+.+.|++. 
T Consensus       258 iG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-  335 (409)
T PRK07590        258 CAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFN-GVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA-  335 (409)
T ss_pred             eEEEEcCHHHhhhccccchhhhHHHHHHHHhhccc-CcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence             9999998888621           0111111221 2244444444444431  1111345777888888899999886 


Q ss_pred             CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHH
Q 011567          389 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~  468 (483)
                      ++.+..+..+.++++.+++..     +   ..+++..+++++||.+.++......   ....+||+.  ..+++++++++
T Consensus       336 ~~~~~~~~g~~f~wi~~~~~~-----~---~~~~~~~l~~~~gv~v~pg~~f~~~---~~~~iRi~~--~~~~~~l~~~l  402 (409)
T PRK07590        336 GFEVYGGVNAPYIWVKTPDGM-----S---SWDFFDKLLQEANVVGTPGSGFGPS---GEGYFRLSA--FGSRENVLEAM  402 (409)
T ss_pred             CCceecCCcceEEEEECCCCC-----C---HHHHHHHHHHHCCEEEeChhHhCCC---CCCEEEEEc--cCCHHHHHHHH
Confidence            777665456778888885421     1   2356666777779999887543210   023599985  35799999999


Q ss_pred             HHHHHH
Q 011567          469 ESLKRI  474 (483)
Q Consensus       469 ~~l~~~  474 (483)
                      +.|.++
T Consensus       403 ~rl~~~  408 (409)
T PRK07590        403 ERIKKA  408 (409)
T ss_pred             HHHHhh
Confidence            999865

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.89  E-value=2e-20  Score=185.86  Aligned_cols=283  Identities=14%  Similarity=0.125  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHhhhCCC-CEEEec-ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHH
Q 011567          155 VHLDCEARIAKFLGTP-DSILYS-YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTL  232 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e-~~i~~~-sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l  232 (483)
                      ...+|+++||+++|.+ +.|+.+ ++.+++..++. +.+++++|+. .+++..+...++..|.+++.++.++.+...+.+
T Consensus        41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~~vv~~-~P~y~~y~~~~~~~G~~v~~vp~~~~~~~~~~l  118 (332)
T PRK06425         41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVGNIIIV-EPNFNEYKGYAFTHGIRISALPFNLINNNPEIL  118 (332)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCCcEEEe-CCChHHHHHHHHHcCCeEEEEeCCcccCcHHHH
Confidence            4689999999999964 445554 44577777776 4567776666 788888999999999999888764321112333


Q ss_pred             HHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ++.         ++++|++...+|++|.+.+   +++|+++|++||+++|+||+|.....+. ........+  ..+..|
T Consensus       119 ~~~---------~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-~~~~~~~~~--~~~~vi  186 (332)
T PRK06425        119 NNY---------NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-AEEDVLLNR--SYGNVI  186 (332)
T ss_pred             hhc---------CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-chhHHHHhc--cCCCEE
Confidence            221         2456666678899999988   6778888999999999999998654321 011111111  123368


Q ss_pred             EEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567          310 VTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       310 ~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      +++||||++|.+|   ||+++++++++.++.....+.    .+..++++ ......-....+.++.++++.+++.+.|++
T Consensus       187 ~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~~----~~~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  261 (332)
T PRK06425        187 IGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWS----VCDPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEA  261 (332)
T ss_pred             EEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCCc----cCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999777   999999999988876443321    22322222 222211111124677788888999999988


Q ss_pred             CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567          387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       387 ~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~  466 (483)
                      + |+.+..++.++++++.+++           ..++++.+++ +||.+.+.......   .++.+||++.   ++++.++
T Consensus       262 ~-g~~~~~~~~g~f~~~~~~~-----------~~~~~~~l~~-~gi~v~~~~~f~~~---~~~~iRis~~---~~~~~~~  322 (332)
T PRK06425        262 M-GFRAAGDPSANFITFMIPD-----------AHDFYSYLLK-NGILVRLLDDYECL---GEQYIRIAIR---RRSFNIK  322 (332)
T ss_pred             C-CCEECCCCCceEEEEEcCC-----------HHHHHHHHHH-CCeEEEECCCCCCC---CCCEEEEEeC---CHHHHHH
Confidence            6 7776544577788887631           2356776665 59999886432110   0235999984   7899999


Q ss_pred             HHHHHHHHH
Q 011567          467 ACESLKRIS  475 (483)
Q Consensus       467 ~~~~l~~~~  475 (483)
                      ++++|++++
T Consensus       323 l~~al~~~~  331 (332)
T PRK06425        323 LVNALRNFL  331 (332)
T ss_pred             HHHHHHHHh
Confidence            999998764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=1.1e-20  Score=191.16  Aligned_cols=213  Identities=15%  Similarity=0.167  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+||++||++.|.+.++++++|++|+..++.++.++||.|+++...|.++..    .+...|.++..++..|++++
T Consensus        63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l  142 (398)
T PRK08249         63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQI  142 (398)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHH
Confidence            36789999999999999999999999999999999999999999999988876543    24456788888888888888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.+++          ++++|++|.+.+++|.+.|+++|.++|++||+++|+|++|+.+...+   .    ..   ..+|
T Consensus       143 ~~~i~~----------~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---~----l~---~~~D  202 (398)
T PRK08249        143 EAEIAK----------GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN---P----LA---LGAD  202 (398)
T ss_pred             HHhcCC----------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC---c----hh---hCCC
Confidence            877743          26899999999999999999999999999999999999998553321   1    11   2358


Q ss_pred             EEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          309 IVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++.|++|.+|+    .||++++++++++.++....  ..+..++|..+..++..++.+.   ..+++..++++.+.+.|
T Consensus       203 ivv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~--~~g~~~s~~~a~l~l~~l~tL~---~R~~~~~~na~~la~~L  277 (398)
T PRK08249        203 LVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE--INGATMDPMSAYLILRGMKTLK---LRVRQQQESAMALAKYL  277 (398)
T ss_pred             EEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhCcchHH---HHHHHHHHHHHHHHHHH
Confidence            999999999974    36888999888887654322  2345678888888888877764   36677888999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+.+
T Consensus       278 ~~~p~v  283 (398)
T PRK08249        278 QTHPKV  283 (398)
T ss_pred             HcCCCe
Confidence            876543

>PRK06460 hypothetical protein; Provisional

Probab=99.88  E-value=9.6e-21  Score=190.57  Aligned_cols=212  Identities=14%  Similarity=0.142  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCch----hHHHhHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVH----WGIQNGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h----~s~~~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|++++|++.|.+.++++++|++|+..++.++.++||.|++..+.+    ..+...++..|.++..++.++.+.++
T Consensus        45 p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~  124 (376)
T PRK06460         45 PTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIE  124 (376)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHH
Confidence            56789999999999999999999999999999999999999888876543    23345667778888888877655444


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ++++   +       ++++|+++.++|++|.+.|+++|+++|++||+++|+||+|+.+...   ..      +. .++|+
T Consensus       125 ~~~~---~-------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~---~~------l~-~~~di  184 (376)
T PRK06460        125 KAKS---K-------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ---KP------LE-LGADI  184 (376)
T ss_pred             HhcC---C-------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC---Ch------hh-cCCCE
Confidence            4321   1       3689999999999999999999999999999999999998754211   11      11 23589


Q ss_pred             EEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|++++    .+|++++++++++.++.....  ++.+++|..+..++..++.++   ..++++.++++++.+.|+
T Consensus       185 vv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~--~g~~~~~~~a~~~l~~~~~l~---~r~~~~~~n~~~l~~~L~  259 (376)
T PRK06460        185 VVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRT--LGTSLDPHAAYLTLRGIKTLK---IRMDVINRNAEQIAEFLE  259 (376)
T ss_pred             EEeecceeccCCCCceEEEEecCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhchhhHH---HHHHHHHHHHHHHHHHHH
Confidence            99999999974    368999999988887654333  344567766666666666554   478889999999999998


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+.+
T Consensus       260 ~~p~v  264 (376)
T PRK06460        260 GHPKV  264 (376)
T ss_pred             cCCCc
Confidence            76543

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.88  E-value=3.1e-20  Score=190.73  Aligned_cols=351  Identities=16%  Similarity=0.164  Sum_probs=218.9

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHhcC-----CCCCCCCCcccChHHHHHHHHHHHhhh----C-----CCC-EE
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEKYG-----VGSCGPRGFYGTIDVHLDCEARIAKFL----G-----TPD-SI  173 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g-----~g~~~~~~~~g~~~~~~~l~~~La~~~----g-----~e~-~i  173 (483)
                      -+||++.. |.|-+   ..+.+.+.+..+.-.     ...+..-..|+...-..+|++.+|+++    |     .++ .+
T Consensus        48 g~i~l~~aeN~l~~---d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Iv  124 (447)
T PLN02607         48 GVIQMGLAENQVSF---DLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIV  124 (447)
T ss_pred             ceEEEechhhhhhH---HHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeE
Confidence            38888886 66533   567766666543100     000000011211122345555555554    3     123 44


Q ss_pred             EecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCc
Q 011567          174 LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       174 ~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      +.+++++++..++.+++.+||.|+++.++++.....+. ..|.+++.++.+       |++.+|+.+++..+.    ..+
T Consensus       125 it~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~----~~~  200 (447)
T PLN02607        125 LTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAA----NIR  200 (447)
T ss_pred             EcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHh----CCC
Confidence            44556788888889999999999999999988776666 467777776532       677888887654321    223


Q ss_pred             cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-Cccccc---cCC-CCCceeEEEcccccc
Q 011567          246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-RGLTEH---CGV-PVDKIDIVTAAMGHA  317 (483)
Q Consensus       246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~g~~~~---~~v-~~~~~Di~~~s~~K~  317 (483)
                      ++++++..++|++|.+.+   +++|+++|++||+.+|+||+|+..+++... ..+.+.   .+. +..+.-+++.||||.
T Consensus       201 vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~  280 (447)
T PLN02607        201 VRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKD  280 (447)
T ss_pred             eeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhc
Confidence            566666677889999988   889999999999999999999876665311 111111   111 101234677899999


Q ss_pred             ccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH---Hhc-CcHHHHHHHHHHHHHHHhhccCCC
Q 011567          318 LATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LEE-NPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       318 lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      ||..|   ||+++ ++++++.++... .  |+. .+.....++.+.|+.   .+. ..+.+++++++.+.+.+.|++. |
T Consensus       281 fg~~GlRvG~ivs~n~~l~~~~~~~~-~--~~~-~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-g  355 (447)
T PLN02607        281 LGLPGFRVGTIYSYNDKVVTTARRMS-S--FTL-VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-G  355 (447)
T ss_pred             CCCCcceEEEEEEcCHHHHHHHHHHh-h--cCC-CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            98777   99887 666766655432 1  221 123333333333321   111 1235667778888888899885 7


Q ss_pred             ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHH
Q 011567          390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE  469 (483)
Q Consensus       390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~  469 (483)
                      +++.....+.++++.++......  ......++.++++++.||.+.++....   +..++.+||+++. .++++++++++
T Consensus       356 i~~~~~~ag~fvw~~L~~~~~~~--~~~~e~~l~~~ll~~~gV~v~pG~~f~---~~~~g~fRi~fa~-~~~~~l~~gl~  429 (447)
T PLN02607        356 IECLKGNAGLFCWMNLSPLLETP--TREGELALWDSILREVKLNISPGSSCH---CSEPGWFRVCFAN-MSEDTLEVALK  429 (447)
T ss_pred             CCcccCCeeEEEEEEchHhhcCC--CchhHHHHHHHHHHhCCEEEcCccccC---CCCCCEEEEEecc-CCHHHHHHHHH
Confidence            77665556788888885311100  011123566677777799999875432   1124569999875 57899999999


Q ss_pred             HHHHHHHHH
Q 011567          470 SLKRISAVV  478 (483)
Q Consensus       470 ~l~~~~~~~  478 (483)
                      +|.+++.+-
T Consensus       430 Ri~~~l~~~  438 (447)
T PLN02607        430 RIHRFMDRR  438 (447)
T ss_pred             HHHHHHHHH
Confidence            999998754

>PLN02231 alanine transaminase

Probab=99.88  E-value=7.7e-20  Score=191.02  Aligned_cols=342  Identities=13%  Similarity=0.129  Sum_probs=214.2

Q ss_pred             hHHHHHHHHHHHhc-CCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecccHHHHHhhhhhhc-cCCcE
Q 011567          126 EKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYGLSTMFSAIPCFC-KKGDL  195 (483)
Q Consensus       126 p~i~~a~~~~l~~~-g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG~~a~~~ai~~~~-~~gdi  195 (483)
                      ..+++++.+.+... +...    +.|+...-..+|++.+|+++    |.    ++.++++++++++..++++++ .+||.
T Consensus       143 ~~~i~~a~~~l~~~~~~~~----~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~  218 (534)
T PLN02231        143 ADAIERAWQILDQIPGRAT----GAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDG  218 (534)
T ss_pred             HHHHHHHHHHHHhcCCccc----cCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCE
Confidence            46666666666652 2111    12333333455666666654    42    344555666788999999997 47999


Q ss_pred             EEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hH
Q 011567          196 IVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LD  265 (483)
Q Consensus       196 I~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~  265 (483)
                      |+++.+.|..+...+...|.+++.++.+       |+++|++.+++....    ..+++++++...+|++|.+.+   ++
T Consensus       219 Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~----~~~~k~ivl~nP~NPTG~vls~e~l~  294 (534)
T PLN02231        219 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSK----GITVRALVVINPGNPTGQVLAEENQR  294 (534)
T ss_pred             EEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCCCcCCCHHHHH
Confidence            9999999999988899889888777532       678888887653221    112455555566889999988   78


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCC--ccccc---cCCCCCc-eeEEEccccccc-c---CCCceeec---cHHHH
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGR--GLTEH---CGVPVDK-IDIVTAAMGHAL-A---TEGGFCTG---SARVV  332 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~--g~~~~---~~v~~~~-~Di~~~s~~K~l-g---~~GG~i~~---~~~~~  332 (483)
                      +|+++|++||++||+||+|...++.....  .+.+.   .+....+ .-++++|+||.+ |   ..+||++.   +++++
T Consensus       295 ~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~  374 (534)
T PLN02231        295 DIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVR  374 (534)
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHH
Confidence            99999999999999999998766532111  11111   1111111 246789999976 4   34599865   67888


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHH-----------HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV  401 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~  401 (483)
                      +.+..... .....  +.....++..+++           ++++.+++++.++++.+.+.+.|++++|+.+..+.++.++
T Consensus       375 ~~l~k~~~-~~~~s--~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfyl  451 (534)
T PLN02231        375 EQIYKVAS-VNLCS--NISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYL  451 (534)
T ss_pred             HHHHHHHh-hhcCC--ChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEE
Confidence            87654322 11111  2233333333331           1112224577889999999999998888888765556566


Q ss_pred             EEEecCCCCCchhhH----HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          402 FLILEKSTGSMKNDL----QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~----~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +..+.-+....+...    .....++.+++++.||.+.++........  ...+|+++  ..++++++++++.|++++++
T Consensus       452 w~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g--~~~~Rit~--~~~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        452 FPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPG--TWHFRCTI--LPQEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             eccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCC--CCeEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence            644421110000000    00123556677778999998764321000  11399987  36899999999999999999


Q ss_pred             HHhcC
Q 011567          478 VLRDR  482 (483)
Q Consensus       478 ~~~~~  482 (483)
                      .++++
T Consensus       528 ~~~~~  532 (534)
T PLN02231        528 FMDEF  532 (534)
T ss_pred             HHHHh
Confidence            88764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.4e-20  Score=188.38  Aligned_cols=306  Identities=14%  Similarity=0.145  Sum_probs=204.5

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHhhh
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFSAI  186 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~ai  186 (483)
                      ..+++.+| |.+|..  +.+.   ...+..|.            .....+|++.+++++|.+ +.|++ +++++++..++
T Consensus        29 ~~~~l~~Nenp~~~~--~~~~---~~~~~~Yp------------~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~   91 (351)
T PRK01688         29 GDVWLNANEYPTAVE--FQLT---QQTLNRYP------------ECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLI   91 (351)
T ss_pred             CceEecCCCCCCCCC--hhhc---ccccccCC------------CCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHH
Confidence            35889888 777753  3321   11122221            112478999999999954 34544 55568888999


Q ss_pred             hhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          187 PCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       187 ~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      +++.++| |.|++..+.|..+...++..|.+++.++.+     |++++++.+.           .+++|++..++|++|.
T Consensus        92 ~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-----------~~~lv~l~nPnNPTG~  160 (351)
T PRK01688         92 RAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-----------GVKVVYVCSPNNPTGN  160 (351)
T ss_pred             HHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-----------CCcEEEEeCCCCCCCC
Confidence            9999887 889999999988888888889988877643     4555555431           2567777788899999


Q ss_pred             ccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          261 IAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       261 i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      +.+.+++.++++..  +.++|+||+|..+....   ........  .+.-+++.||||++|..|   ||+++++++++.+
T Consensus       161 ~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~---s~~~~~~~--~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l  235 (351)
T PRK01688        161 LINPQDLRTLLELTRGKAIVVADEAYIEFCPQA---SLAGWLAE--YPHLVILRTLSKAFALAGLRCGFTLANEEVINLL  235 (351)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEECchhhcCCCC---ChHHHHhh--CCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHH
Confidence            99976666665532  68999999997643211   11111111  122588899999999777   9999999999888


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      +....+|    +.+....+++.++|+.  .+...+.++.+.++.+++.+.|++++++....++.++++++.+.+      
T Consensus       236 ~~~~~~~----~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~------  305 (351)
T PRK01688        236 LKVIAPY----PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTA------  305 (351)
T ss_pred             HhccCCC----CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC------
Confidence            7654443    2344445555555542  111234566777788899999988767653335578888877631      


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecc-cccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKR-SMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~-~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                           ..++.+.++ ++||.++.... +..     ++.+||++.   +++|+++++++|+
T Consensus       306 -----~~~l~~~L~-~~gi~vr~~~~~~~~-----~~~iRis~~---~~~e~~~l~~al~  351 (351)
T PRK01688        306 -----SSAVFKSLW-DQGIILRDQNKQPGL-----SNCLRITIG---TREECQRVIDALR  351 (351)
T ss_pred             -----HHHHHHHHH-HCCeEEEECCCcCCC-----CCeEEEeCC---CHHHHHHHHHhhC
Confidence                 235677655 46999986432 221     345999985   7899999998873

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=2.5e-20  Score=185.14  Aligned_cols=310  Identities=14%  Similarity=0.129  Sum_probs=211.0

Q ss_pred             ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---C-CCEEEe-cccH
Q 011567          106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---T-PDSILY-SYGL  179 (483)
Q Consensus       106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~-e~~i~~-~sG~  179 (483)
                      .+|+..+||..+ |.++  .+|.+.+++.+.+..-..+      .|.. +...+|++.++++++   . ++.++. +++.
T Consensus        16 ~~~~~~i~l~~~~~~~~--~p~~~~~~~~~~~~~~~~~------~Y~~-~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~   86 (335)
T PRK14808         16 TEKRDRTYLALNENPFP--FPEDLVDEVFRRLNSDTLR------IYYD-SPDEELIEKILSYLDTDFLSKNNVSVGNGAD   86 (335)
T ss_pred             CCCCceeEecCCCCCCC--CCHHHHHHHHHHhhhhhhh------cCCC-CChHHHHHHHHHHhCCCCCCcceEEEcCCHH
Confidence            467789999988 5554  4588999988876531111      1111 135789999999987   2 344555 5556


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++..++.++    |.|++..++|..+...++..|.+++.++..+--.+...  .. .       .+++|++...+|++|
T Consensus        87 ~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~--~~-~-------~~~~i~i~nP~NPTG  152 (335)
T PRK14808         87 EIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV--NV-G-------EGDVVFIPNPNNPTG  152 (335)
T ss_pred             HHHHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChh--Hc-c-------CCCEEEEeCCCCCCC
Confidence            8888888887    55788889999999999999999988875321001000  01 1       246888888999999


Q ss_pred             CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHH
Q 011567          260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR  336 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~  336 (483)
                      .+.+.+++.+++ ++++++|+||+|.... +.   .......-  .+.-++++||||++|..|   ||+++++++++.+.
T Consensus       153 ~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~-~~---~~~~~~~~--~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~  225 (335)
T PRK14808        153 HVFEREEIERIL-KTGAFVALDEAYYEFH-GE---SYVDLLKK--YENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYN  225 (335)
T ss_pred             CCcCHHHHHHHH-hcCCEEEEECchhhhc-CC---chHHHHHh--CCCEEEEEechhhccCcccceEEEEeCHHHHHHHH
Confidence            999999999998 5899999999997642 21   11111111  123588899999999878   99999999999886


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                      .....  ++  .++....++.++++..+...+..+.++++.+.+.+.|++. |+.+.. +.++++++.++..      + 
T Consensus       226 ~~~~~--~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~-~~g~f~~~~l~~~------~-  292 (335)
T PRK14808        226 RVRLP--FN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRITD-SRGNFVFIFMEKE------E-  292 (335)
T ss_pred             HhcCC--CC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECC-CCCeEEEEeCCCc------c-
Confidence            54422  22  2444445555566533222345566777788888899886 777654 4788888887521      1 


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                        ..++.+. |.++||+++..          +..+||++.   +.++.++++++|+++
T Consensus       293 --~~~~~~~-l~~~Gi~V~~~----------~~~~Risi~---~~~~~~~~~~~l~~~  334 (335)
T PRK14808        293 --KERLLEH-LRAKNIAVRSF----------REGVRITIG---KREENDMILKELEVF  334 (335)
T ss_pred             --HHHHHHH-HHHCCeEEEEC----------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence              1345665 44569999842          134999984   679999999988753

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.88  E-value=3e-20  Score=189.49  Aligned_cols=337  Identities=15%  Similarity=0.145  Sum_probs=208.1

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh---CC-CCEEEeccc-HHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---GT-PDSILYSYG-LSTM  182 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~---g~-e~~i~~~sG-~~a~  182 (483)
                      |+.++|+..++. .+...|.+.+++.+.+++.....  .-..|+...-..+|++.+|+++   +. ++.|++++| .+++
T Consensus        32 ~~~~i~l~~~~~-~~~~~~~v~~~~~~~~~~~~~~~--~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        32 SADIIRLGIGDT-TQPLPASVIEAFHNAVDELASEE--TFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCCeEEcCCCCC-CCCCCHHHHHHHHHHHhcccccc--cccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            457899998743 22245788899888887632110  0011322233466778888765   32 244555545 5666


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCC-----------eEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRS-----------TVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~-----------~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ..+ ..+..+||.|+++.++|..+...++..|.           ++..++..+-+.+...+.+. .       ++++|++
T Consensus       109 ~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-------~~~~i~l  179 (402)
T TIGR03542       109 FRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-P-------KIDIIYL  179 (402)
T ss_pred             HHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-C-------CceEEEE
Confidence            654 45567899999999999888888888887           77766543111111111110 1       2456666


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      ...++++|.+.+   +++|+++|++||+++|+||+|+....+.+ . ......++. .+..|+++||||.+|.+|   ||
T Consensus       180 ~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~-~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~  257 (402)
T TIGR03542       180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS-L-PHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW  257 (402)
T ss_pred             eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC-C-CcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence            678899999999   78999999999999999999986544321 1 111112221 233577899999998777   99


Q ss_pred             eeccHHHH--------HHHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          325 CTGSARVV--------DHQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       325 i~~~~~~~--------~~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      ++++++++        +.+.... ...+. +.+++...++.+.++.  .....+.++.++++.+.+.+.|++. ++.+..
T Consensus       258 ~i~~~~l~~~~~~~~~~~~~~~~-~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~  334 (402)
T TIGR03542       258 TVVPKELTYADGHSVIQDWERRQ-CTKFN-GASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-GFKVYG  334 (402)
T ss_pred             EEecHHHhhcchhhHHHHHHHHh-hhccc-CCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-CceecC
Confidence            99988776        2221111 11121 1234444444444421  1111234566778888888999875 776654


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..++++++.++...     +   ..+++..++++.||.+.++......   .++.+||+..  .++++++++++.|+++
T Consensus       335 ~~~~~f~~v~l~~~~-----~---~~~l~~~l~~~~gv~v~pg~~f~~~---~~~~iRis~~--~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       335 GEHAPYLWVKTPEGI-----S---SWDFFDFLLYQYHVVGTPGSGFGPS---GEGFVRFSAF--GKRENIVEACERIKEA  401 (402)
T ss_pred             CCceeEEEEECCCCC-----C---HHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEec--CCHHHHHHHHHHHHhh
Confidence            446778888875321     1   2256777776679999887543211   1245999963  4789999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=6.5e-21  Score=192.12  Aligned_cols=212  Identities=15%  Similarity=0.161  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh---hhcCCeEEEecCCCHHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHNDMDSLRN  230 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~d~~~Le~  230 (483)
                      +...+||+.+|+++|.++++++++|++|+..++.++.++||.|+++...|.++...+   ...+.++..+. .|++++++
T Consensus        53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~-~d~~~l~~  131 (385)
T PRK08574         53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY-PSTEDIIE  131 (385)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-CCHHHHHH
Confidence            467889999999999999999999999999999999999999999999998876655   33466665553 46777777


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEE
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIV  310 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~  310 (483)
                      .+++.         ++++|++|.+++++|.+.|+++|+++|++||+++|+|++++.+...   +++      . .++|++
T Consensus       132 ~i~~~---------~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~---~~l------~-~GaDiv  192 (385)
T PRK08574        132 AIKEG---------RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLY---RPL------R-HGADFV  192 (385)
T ss_pred             hcCcc---------CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC---Chh------h-hCCcEE
Confidence            66431         2678889999999999999999999999999999999999866432   222      1 234999


Q ss_pred             EccccccccC----CCc-eeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          311 TAAMGHALAT----EGG-FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       311 ~~s~~K~lg~----~GG-~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++|++|++++    .|| ++++++++.+.++....  .++..++|+.++.++..++.+.   ...++..+++..+.+.|+
T Consensus       193 v~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~--~~g~~~~p~~a~l~l~~l~tL~---~R~~~~~~na~~la~~L~  267 (385)
T PRK08574        193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR--RLGTIMQPFEAYLVLRGLKTLE---VRFERQCRNAMAIAEFLS  267 (385)
T ss_pred             EeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCcHH---HHHHHHHHHHHHHHHHHH
Confidence            9999999974    367 55667777776653322  2456678888887777776654   467777888888889898


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+.+
T Consensus       268 ~~p~v  272 (385)
T PRK08574        268 EHPKV  272 (385)
T ss_pred             cCCCc
Confidence            76643

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=5.1e-20  Score=180.52  Aligned_cols=310  Identities=19%  Similarity=0.297  Sum_probs=216.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-cCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-KKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-~~gdiI~~~~~~h~  204 (483)
                      .+..+++.+.++..-.         .+.+...++|+.+++++|...++.++||+.|+..+++++. ++||.|+++..++.
T Consensus        15 ~~e~~~v~~vl~sg~i---------~~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~Tfv   85 (374)
T COG0399          15 EEELAAVQEVLKSGWL---------TGGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFV   85 (374)
T ss_pred             hHHHHHHHHHHHcCCe---------ecChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchH
Confidence            4566777777776322         1235678999999999999999999999999999999665 99999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++.+++...|++++.++.+      |++.+|+.+..          ++++|+.-+.+   |..+++++|.++|++||+++
T Consensus        86 ATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~----------~tKAIipVhl~---G~~~dm~~i~~la~~~~l~v  152 (374)
T COG0399          86 ATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITP----------RTKAIIPVHLA---GQPCDMDAIMALAKRHGLPV  152 (374)
T ss_pred             HHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHccc----------CCeEEEEehhc---cCCCCHHHHHHHHHHcCCeE
Confidence            9999999999998877643      78888888765          36788877777   88899999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEccc--cccccC-CCceeecc-HHHHHHH---HhcCCc------e---
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT-EGGFCTGS-ARVVDHQ---RLSSSG------Y---  342 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~-~GG~i~~~-~~~~~~~---~~~~~~------~---  342 (483)
                      |.|.+|++|..-+ |+.. ..+|      |+-++||  .|.++. -||+++.+ +++.+..   +..+..      |   
T Consensus       153 IEDaAqa~Ga~y~-gk~v-Gt~G------d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~  224 (374)
T COG0399         153 IEDAAQAHGATYK-GKKV-GSFG------DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHE  224 (374)
T ss_pred             EEEcchhccCeec-Cccc-cccc------ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceee
Confidence            9999999886432 3321 1233      5666677  788864 48887665 4555543   333332      1   


Q ss_pred             --eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCC-----CEEEEEecCCCCCchhh
Q 011567          343 --VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPES-----PIVFLILEKSTGSMKND  415 (483)
Q Consensus       343 --~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~-----~i~~l~l~~~~~~~~~~  415 (483)
                        -|..-++.+.+|.++..|+.+++   ..++-+++.+...+.|++++++.+...+..     ....+.+.+. + .   
T Consensus       225 ~~G~N~rm~~iqAAigl~QL~~l~~---~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~-~---  296 (374)
T COG0399         225 ELGYNYRLTEIQAAIGLAQLERLDE---INERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE-G-I---  296 (374)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-C-C---
Confidence              12234778888888888887754   666777788888888888765544322222     2333444322 0 0   


Q ss_pred             HHHHHHHHHHHHHhCCEE----EEeecccc-ccc------CCCCC-------ceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVF----VVTSKRSM-LDK------CRLPV-------GIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~----v~~~~~~~-~~~------~~~~~-------~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                        .-..+.. .|++.||.    ..|..... ..+      ...|.       .|++.+...+|++|+++++++|++++.
T Consensus       297 --~R~~l~~-~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~  372 (374)
T COG0399         297 --SRDALME-SLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG  372 (374)
T ss_pred             --CHHHHHH-HHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence              1113444 56777665    22211110 000      11222       388989999999999999999998875

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.88  E-value=9.6e-20  Score=184.41  Aligned_cols=316  Identities=17%  Similarity=0.227  Sum_probs=212.2

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      ++-.+++.+.++...         +...+...++|+.+++++|.+.++++++|++|+..++.++ .++||.|+++...|.
T Consensus        10 ~~~~~~v~~~~~~~~---------~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~   80 (380)
T TIGR03588        10 QDDIDAVVEVLKSDF---------LTQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFV   80 (380)
T ss_pred             HHHHHHHHHHHhcCC---------ccCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchH
Confidence            445677777776531         1123457889999999999999999999999999999998 789999999999999


Q ss_pred             HHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++...+...|.+++.++.      .|++++++.+++...     + ++++|++.+   ..|...|+++|.++|++||+++
T Consensus        81 ~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-----~-~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~l  151 (380)
T TIGR03588        81 ATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKG-----K-LPKAIVPVD---FAGKSVDMQAIAALAKKHGLKI  151 (380)
T ss_pred             HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccC-----C-CceEEEEeC---CCCccCCHHHHHHHHHHcCCEE
Confidence            988888888998887754      267888877753211     1 245555433   3588899999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeec-cHHHHHHHHh---cCC-----------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTG-SARVVDHQRL---SSS-----------  340 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~-~~~~~~~~~~---~~~-----------  340 (483)
                      |+|++|++|.. -.|+    ..|.. .-.|+.+.|++  |.++ +.||+++. ++++.+.++.   .+.           
T Consensus       152 I~D~a~a~g~~-~~~~----~~g~~-~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  225 (380)
T TIGR03588       152 IEDASHALGAE-YGGK----PVGNC-RYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD  225 (380)
T ss_pred             EEECCCcccCc-cCCE----eCCCc-cccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence            99999998743 1121    12220 12288888886  8886 46777654 5666655432   110           


Q ss_pred             --cee-------ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC----C-CEEEEEec
Q 011567          341 --GYV-------FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE----S-PIVFLILE  406 (483)
Q Consensus       341 --~~~-------fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----~-~i~~l~l~  406 (483)
                        .+.       +...++.+.++.++..|+.+   ++..++-+++.+++++.|.+++++.+...+.    + .+..+.+.
T Consensus       226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l---~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~  302 (380)
T TIGR03588       226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKL---DRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD  302 (380)
T ss_pred             cCcceeeeeccccccCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEEC
Confidence              011       12235677777777666655   4577888999999999999887665432211    1 23333443


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---------ccCCCC-------CceEEEccCCCCHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---------DKCRLP-------VGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---------~~~~~~-------~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      ...+ .     ...++.+. |+++||.++....+..         .....|       ..|++.++..+|++|+++++++
T Consensus       303 ~~~~-~-----~r~~l~~~-L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~  375 (380)
T TIGR03588       303 QEFG-C-----TRKEVFEA-LRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVET  375 (380)
T ss_pred             CcCC-C-----CHHHHHHH-HHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHH
Confidence            2111 0     12245554 5667998864432211         011112       2388989999999999999999


Q ss_pred             HHHHH
Q 011567          471 LKRIS  475 (483)
Q Consensus       471 l~~~~  475 (483)
                      |++++
T Consensus       376 l~~~~  380 (380)
T TIGR03588       376 LRKVL  380 (380)
T ss_pred             HHHhC
Confidence            98763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.88  E-value=2.4e-20  Score=189.23  Aligned_cols=214  Identities=15%  Similarity=0.173  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++++++.|.+.++++++|++|+..++.++.++||.|+++...|....    ..+...|.++..++..|+++++
T Consensus        65 p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~  144 (403)
T PRK07503         65 PTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALK  144 (403)
T ss_pred             chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHH
Confidence            467899999999999999999999999999999999999999999988776543    3455678888888888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.+++|.+.|+++|.++|++||+++|+|++|+.+..+   +.    .+   ...|+
T Consensus       145 ~~i~~----------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~---~~----l~---~g~Di  204 (403)
T PRK07503        145 AAISD----------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQ---RP----LE---LGADL  204 (403)
T ss_pred             HhcCc----------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC---Cc----hh---hCCCE
Confidence            77643          2678889999999999999999999999999999999999865432   11    11   23489


Q ss_pred             EEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      +++|++|.+++.    ||++++++++.+.++........+..++|+.++.++..|+.+.   ...++..++...+.+.|+
T Consensus       205 ~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~---~r~~~~~~na~~~a~~L~  281 (403)
T PRK07503        205 VVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA---LRMDRHCASAQAVAEWLA  281 (403)
T ss_pred             EEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH---HHHHHHHHHHHHHHHHHH
Confidence            999999999853    5888888888887764322223345678998888877776653   356666788888888888


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+.+
T Consensus       282 ~~p~v  286 (403)
T PRK07503        282 RHPAV  286 (403)
T ss_pred             hCCCc
Confidence            76544

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.7e-20  Score=191.36  Aligned_cols=329  Identities=13%  Similarity=0.094  Sum_probs=207.8

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCCEEE---eccc
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSIL---YSYG  178 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~~i~---~~sG  178 (483)
                      +..+|++.+.+-...+++.+.+++.+++++.-.  .+.-..|+...-..+|++.+++++.       .++.++   +.+|
T Consensus        29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~  106 (404)
T PTZ00376         29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE--KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG  106 (404)
T ss_pred             cccEecccceeECCCCCEehhhHHHHHHHHhcc--ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence            467899887543333344555666665533110  0000123333334567777777652       123344   4555


Q ss_pred             HHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          179 LSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       179 ~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      .+|+..++   .+++++||.|++++++|..+...++..|.+++.++.   +    |++.+++.+++...       ++++
T Consensus       107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~-------~~~~  179 (404)
T PTZ00376        107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPN-------GSVV  179 (404)
T ss_pred             chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCC-------CCEE
Confidence            66666554   577899999999999999999999999999988875   2    57777777754322       2567


Q ss_pred             EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC---CCccccccCCCCCceeEEEccccccccCCC
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS---GRGLTEHCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~---G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +++...+|+||.+.+   +++|+++|++|++++|+||+|....++..   ...+......  .+.-|+++||||+++..|
T Consensus       180 ~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~--~~~vi~i~SfSK~~~~~G  257 (404)
T PTZ00376        180 LLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER--GVEFLVAQSFSKNMGLYG  257 (404)
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCcccccc
Confidence            888889999999988   78889999999999999999976544210   0001111111  112588899999999666


Q ss_pred             ---cee---eccHHHHHHHHhcC---CceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhcc
Q 011567          323 ---GFC---TGSARVVDHQRLSS---SGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       323 ---G~i---~~~~~~~~~~~~~~---~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                         ||+   ++++++++.+....   ....++ +.+++...++.++++.-       +...+.+++++++.+.+.+.|++
T Consensus       258 lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  336 (404)
T PTZ00376        258 ERIGALHIVCANKEEAANVLSQLKLIIRPMYS-SPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA  336 (404)
T ss_pred             cccceEEEEeCCHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               997   57877555432110   111222 22445555555555321       11123456778888999999987


Q ss_pred             CC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          387 IH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       387 ~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      ..   ++.+..+..+.++++.+.             .+++.+++++.||.+.++            + |++++. .++++
T Consensus       337 ~~~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~------------~-Ris~~~-~~~~~  389 (404)
T PTZ00376        337 LGSPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDN------------G-RISVAG-LTSKN  389 (404)
T ss_pred             cCCCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCC------------C-eEEEec-cCHHh
Confidence            62   133333334445555441             146777777779988653            2 898854 79999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          464 LVKACESLKRISA  476 (483)
Q Consensus       464 i~~~~~~l~~~~~  476 (483)
                      +++++++|++++.
T Consensus       390 ~~~~~~~l~~~~~  402 (404)
T PTZ00376        390 VDYVAEAIHDVVR  402 (404)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.87  E-value=1.8e-20  Score=189.03  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|++.+++++|.+.+++++||++|+..++.++.++||.|++....|++...    .+...|.++..++.+|+++++
T Consensus        54 p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~  133 (380)
T TIGR01325        54 PTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWE  133 (380)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHH
Confidence            5678999999999999999999999999999999999999999988887765432    344567888888888888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.+++|.+.|+++|.++|++||+++|+|++++.+...   ..    ..   ..+|+
T Consensus       134 ~~i~~----------~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~---~p----l~---~g~Di  193 (380)
T TIGR01325       134 AAVKP----------NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQ---QP----LK---LGADV  193 (380)
T ss_pred             HhcCC----------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC---Cc----hh---hCCCE
Confidence            66532          3689999999999999999999999999999999999999754322   11    11   23489


Q ss_pred             EEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.+++.    ||++++++++++.++....  .++..++|..+..++..++.+.   ...++..+++..+.+.|+
T Consensus       194 vv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~--~~g~~~~p~~a~~~l~~l~tl~---~r~~~~~~~a~~la~~L~  268 (380)
T TIGR01325       194 VVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR--HTGPAMSPFNAWVLLKGLETLS---LRMQKQFDSALAIAEWLQ  268 (380)
T ss_pred             EEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH--hhCCCCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHHHHH
Confidence            999999999743    5889998888777654321  2344567887777766666654   367777888888888888


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+++
T Consensus       269 ~~p~v  273 (380)
T TIGR01325       269 AQPQV  273 (380)
T ss_pred             cCCCc
Confidence            77643

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.87  E-value=1.9e-20  Score=189.77  Aligned_cols=212  Identities=13%  Similarity=0.144  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||+++|.+.++++++|++|+..++.++.++||.|++....|.++...+    ...|.++..++..|+++++
T Consensus        65 p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~  144 (398)
T PRK07504         65 PTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWE  144 (398)
T ss_pred             chHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHH
Confidence            457899999999999999999999999999888888999999999888877654332    3457788888877888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|+++.+.+++|.+.|+++|.++|+++|+++|+||+|+.+....   .    ..   ..+|+
T Consensus       145 ~ai~~----------~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~---~----~~---~gaDi  204 (398)
T PRK07504        145 KAVRP----------NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK---P----LE---LGAHI  204 (398)
T ss_pred             HhcCc----------CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCC---c----hh---hCCCE
Confidence            77642          37899999999999999999999999999999999999998664321   1    11   13489


Q ss_pred             EEccccccccC----CCceeeccHHHHHH-HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTGSARVVDH-QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~~~~~~-~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|++++    .||+++++++.++. ++...  ...+..++|..++.++..++.+.   ...++..+++..+.+.|
T Consensus       205 vv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~--~~~g~~~s~~~A~~~l~~L~tl~---~R~~~~~~na~~la~~L  279 (398)
T PRK07504        205 VVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF--RHTGPSLSPFNAWTLLKGLETLP---VRVRQQTESAAAIADFL  279 (398)
T ss_pred             EEeeccccccCCccceEEEEEeCcHHHHHHHHHHH--HHhCCCCCHHHHHHHHhccchHH---HHHHHHHHHHHHHHHHH
Confidence            99999999974    35788888776542 22110  11234578999998888887764   46777788999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+++
T Consensus       280 ~~~p~v  285 (398)
T PRK07504        280 AGHPKV  285 (398)
T ss_pred             HcCCCc
Confidence            887654

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.87  E-value=2.5e-20  Score=186.87  Aligned_cols=286  Identities=19%  Similarity=0.242  Sum_probs=195.1

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCC-ccc--ChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHhhhhhhc----cCC-
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRG-FYG--TIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFSAIPCFC----KKG-  193 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~-~~g--~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~ai~~~~----~~g-  193 (483)
                      .++.+.+++.+.++... +..+.+. .++  ..+...++++++++++|.+ +.+++ +++++++..++.++.    ++| 
T Consensus        10 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~   88 (353)
T TIGR03235        10 IDPAVAEAMLPWLLEEF-GNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGK   88 (353)
T ss_pred             CCHHHHHHHHHHHHhcC-CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCC
Confidence            56889999988886521 2222211 112  2256789999999999975 44555 556788888888775    245 


Q ss_pred             cEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChH
Q 011567          194 DLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLD  265 (483)
Q Consensus       194 diI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~  265 (483)
                      +.|+++...|.++....   ...|.+++.++.+     |++++++.+++          .+++|+++++++++|.+.|++
T Consensus        89 ~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~----------~~~lv~~~~~~n~tG~~~~~~  158 (353)
T TIGR03235        89 KHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRP----------DTLLVSIMHVNNETGSIQPIR  158 (353)
T ss_pred             CeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC----------CCEEEEEEcccCCceeccCHH
Confidence            78999998898876553   3357777776642     67777766532          268898999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcC----C
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSS----S  340 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~----~  340 (483)
                      +|.++|++||+++++|+++++|...         +++...++|++++|.+|++|+.| |+++.+++..+..+...    .
T Consensus       159 ~I~~l~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~  229 (353)
T TIGR03235       159 EIAEVLEAHEAFFHVDAAQVVGKIT---------VDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGG  229 (353)
T ss_pred             HHHHHHHHcCCEEEEEchhhcCCcc---------ccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCC
Confidence            9999999999999999999977542         23433457999999999988765 78777766432211110    0


Q ss_pred             c---eeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEecCCCCCch
Q 011567          341 G---YVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLILEKSTGSMK  413 (483)
Q Consensus       341 ~---~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~~i~~l~l~~~~~~~~  413 (483)
                      +   ....++.|+....+..++++.+.+. ++..++++++.+++++.|++ +|+++..++.   ..++.+.++..     
T Consensus       230 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~-----  303 (353)
T TIGR03235       230 GQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGV-----  303 (353)
T ss_pred             CCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCc-----
Confidence            0   0112345666666777788877643 46788999999999999988 6988764322   33566655321     


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccc
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSM  441 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~  441 (483)
                       +   ..++... |++ +|.++++..+.
T Consensus       304 -~---~~~v~~~-L~~-~i~v~~g~~~~  325 (353)
T TIGR03235       304 -N---SEALIVN-LRA-DAAVSTGSACS  325 (353)
T ss_pred             -C---HHHHHHH-HhC-CeEEEchhhcC
Confidence             1   2245554 565 89998765543

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.87  E-value=4.6e-20  Score=186.91  Aligned_cols=213  Identities=16%  Similarity=0.178  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||++.|.++++++++|++|+..++.++.++||.|+++...|+...    ..+...|.++..++.+|+++++
T Consensus        70 p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~  149 (403)
T PRK07810         70 PTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWE  149 (403)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHH
Confidence            447899999999999999999999999999999999999999998886664433    3455678899999998999998


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|++|.+.+++|.+.|+++|+++|+++|+++|+|++|+.+...   +++      . ..+|+
T Consensus       150 ~ai~~----------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~---~~~------~-~gaDi  209 (403)
T PRK07810        150 EALSV----------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQ---RGL------P-LGADV  209 (403)
T ss_pred             HhcCc----------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccC---Chh------h-cCCcE
Confidence            87753          2689999999999999999999999999999999999999866543   221      1 23599


Q ss_pred             EEccccccccCC----CceeeccHHHHHH-HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDH-QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~-~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|.+++.    ||+++++++.+.. ++...  ...+..++|..++.++..|+.+.   .+.++..+++..+.+.|
T Consensus       210 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~--~~~g~~~s~~~a~l~l~~L~tl~---~R~~~~~~~a~~~a~~L  284 (403)
T PRK07810        210 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM--RHTGPALSAFNAWVLLKGLETLA---LRVRHSNASALRIAEFL  284 (403)
T ss_pred             EEccCCceecCCcCceeEEEEeChHHHHHHHHHHH--HHhCCCCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHHHH
Confidence            999999999742    6888888775542 32111  12234578998888888777664   47888888988999999


Q ss_pred             ccCCCce
Q 011567          385 SDIHGLS  391 (483)
Q Consensus       385 ~~~~~~~  391 (483)
                      ++.+++.
T Consensus       285 ~~~p~v~  291 (403)
T PRK07810        285 EGHPAVR  291 (403)
T ss_pred             hcCCCcc
Confidence            8876543

>PRK07908 hypothetical protein; Provisional

Probab=99.87  E-value=1.5e-19  Score=180.93  Aligned_cols=316  Identities=16%  Similarity=0.172  Sum_probs=209.1

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~  184 (483)
                      ++.++||..+ |.++  .++.+.+++.+.+....        .|+...-..++++.++++++.+ +.|++ +++++++..
T Consensus        21 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~--------~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~   90 (349)
T PRK07908         21 GPGLLDFAVNVRHDT--PPEWLRERLAARLGDLA--------AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFAL   90 (349)
T ss_pred             CCCeEEecCCCCCCC--CCHHHHHHHHHHhhHhh--------cCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHH
Confidence            5679999997 4443  45789999988876531        1222233578999999999853 44555 555688877


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC-H-HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND-M-DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA  262 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d-~-~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~  262 (483)
                      +++ + +++++++ ..+.+......++..|.+++.++.++ . -+++ .++   .       .++++++..+++++|.+.
T Consensus        91 ~~~-l-~~~~viv-~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~-~l~---~-------~~~~i~l~np~NPTG~~~  156 (349)
T PRK07908         91 LAR-L-RPRRAAV-VHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPA-AVP---D-------DADLVVIGNPTNPTSVLH  156 (349)
T ss_pred             HHh-c-CCCeEEE-eCCCChHHHHHHHHcCCEEEeeccCcccCcChh-Hhc---c-------CCCEEEEcCCCCCCCCCc
Confidence            777 4 5666554 56777777777888899888876542 1 0112 111   1       255777777789999999


Q ss_pred             ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcC
Q 011567          263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSS  339 (483)
Q Consensus       263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~  339 (483)
                      |.++|.++|++ +.++|+||+|+....+. -..+..   ...+ ..++++|+||.+|..|   ||+++++++++.++...
T Consensus       157 ~~~~l~~l~~~-~~~iIvDe~y~~~~~~~-~~~l~~---~~~~-~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~  230 (349)
T PRK07908        157 PAEQLLALRRP-GRILVVDEAFADAVPGE-PESLAG---DDLP-GVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGR  230 (349)
T ss_pred             CHHHHHHHHhc-CCEEEEECcchhhccCC-cccccc---ccCC-CEEEEeecccccCCccceeeeeecCHHHHHHHHhcC
Confidence            99999999975 77888999998643222 111111   1212 2578889999998666   99999999988876543


Q ss_pred             CceeecCCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 011567          340 SGYVFSASLPPYLASAAITAID--VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ  417 (483)
Q Consensus       340 ~~~~fs~~~~p~~~aaa~~al~--~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~  417 (483)
                      ..+  +  .++...+++.+.++  ......+.+++++++.+++.+.|++. ++++..++.++++++.+++          
T Consensus       231 ~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~----------  295 (349)
T PRK07908        231 AHW--P--VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPD----------  295 (349)
T ss_pred             CCC--C--ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCc----------
Confidence            332  2  23333333333332  11112346777888888999999887 8887765678888888742          


Q ss_pred             HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          418 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       418 ~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                       ...+.+ .|+++||.+.++.....   ..+..+||++   .+++|+++++++|++++.
T Consensus       296 -~~~~~~-~l~~~gI~v~~g~~f~~---~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        296 -AELLRK-RLRERGIAVRRGDTFPG---LDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             -HHHHHH-HHHhCCEEEEECCCCCC---CCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence             123444 45667999987653211   0134699999   478999999999988754

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.87  E-value=2.4e-19  Score=180.20  Aligned_cols=308  Identities=17%  Similarity=0.247  Sum_probs=209.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-cCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-KKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-~~gdiI~~~~~~h~  204 (483)
                      .+..+++.+.++.-..        ....+...++|+++++++|.+.++.++||+.|+..++.++- ++||.|+++...+.
T Consensus         5 ~e~~~~v~~~l~s~~~--------~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~   76 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWL--------STYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFP   76 (363)
T ss_dssp             HHHHHHHHHHHHHTCC--------SSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-T
T ss_pred             HHHHHHHHHHHHhCCc--------cCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcch
Confidence            3556677777776311        11147789999999999999999999999999999999874 78999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++..++...|.+++.++.+      |++++++.+.+          .+++|++.+.+   |..+++++|.++|+++|+.|
T Consensus        77 ~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~----------~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i~l  143 (363)
T PF01041_consen   77 ATASAILWAGAEPVFVDIDPETLNIDPEALEKAITP----------KTKAILVVHLF---GNPADMDAIRAIARKHGIPL  143 (363)
T ss_dssp             HHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHT----------TEEEEEEE-GG---GB---HHHHHHHHHHTT-EE
T ss_pred             HHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhcc----------CccEEEEecCC---CCcccHHHHHHHHHHcCCcE
Confidence            9999999999999888754      78888888765          36788887776   88889999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEccc--ccccc-CCCceeecc-HHHHHHHH---hcCCc----------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALA-TEGGFCTGS-ARVVDHQR---LSSSG----------  341 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg-~~GG~i~~~-~~~~~~~~---~~~~~----------  341 (483)
                      |.|.+|++|..- .|+.. ..+|      |+.+.||  +|.+. +.||+++.+ +++.+.++   ..+..          
T Consensus       144 IeD~a~a~g~~~-~g~~~-G~~g------d~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  215 (363)
T PF01041_consen  144 IEDAAQAFGARY-KGRPV-GSFG------DIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHE  215 (363)
T ss_dssp             EEE-TTTTT-EE-TTEET-TSSS------SEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEES
T ss_pred             EEccccccCcee-CCEec-cCCC------CceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCcccccccccc
Confidence            999999987532 12211 1122      7778888  58885 457887665 45555443   22211          


Q ss_pred             --eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC------CCEEEEEecCCCCCch
Q 011567          342 --YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE------SPIVFLILEKSTGSMK  413 (483)
Q Consensus       342 --~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~------~~i~~l~l~~~~~~~~  413 (483)
                        +.+...++++.++.++..|+.++   +..++-+++.+.+++.|.+++++.....+.      ...+.+.+++... . 
T Consensus       216 ~~~g~n~rm~~~~AAigl~QL~~L~---~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~-~-  290 (363)
T PF01041_consen  216 LPPGYNFRMSELQAAIGLAQLKRLD---EIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL-A-  290 (363)
T ss_dssp             SSS--B-B-BHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC-S-
T ss_pred             ccCCcccccHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc-c-
Confidence              12333578999998988888775   467777889999999999988764432211      2245666654321 0 


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccc------cC------CCCC-------ceEEEccCCCCHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLD------KC------RLPV-------GIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~------~~------~~~~-------~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                          ...++.+. |++.||.+.+.....+.      ..      ..|.       .|.+.++..+|++|+++++++|+
T Consensus       291 ----~rd~l~~~-L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  291 ----DRDELVEA-LRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             ----THHHHHHH-HHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHH-HHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence                12245664 56679999876531221      00      1121       28899999999999999999885

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=2e-19  Score=180.91  Aligned_cols=285  Identities=14%  Similarity=0.146  Sum_probs=193.7

Q ss_pred             HHHHHHHHHhhhCCC-CEEEe-cccHHHHHhhhhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCCC----H-HH
Q 011567          156 HLDCEARIAKFLGTP-DSILY-SYGLSTMFSAIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHND----M-DS  227 (483)
Q Consensus       156 ~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~ai~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~d----~-~~  227 (483)
                      ..+|++.||+++|.+ +.|++ +++++++..++.+++.+| |.|+++.+++..+....+..|.+++.++..+    + .+
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d  140 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHAD  140 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcC
Confidence            478999999999854 34555 555688889999999888 7899988888777777788899988887521    1 12


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      ++++++.....      ++++|++..+++++|.+.+.+++.++++.  +++++|+||+|.......   ......+.  .
T Consensus       141 ~~~l~~~~~~~------~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~---~~~~~~~~--~  209 (364)
T PRK04781        141 VPAIVAAALAS------NAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP---SAVGLLAR--Y  209 (364)
T ss_pred             HHHHHHHHhcc------CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc---chHHHHhh--C
Confidence            34433322111      25677777888999999998777777764  478999999998654221   11111121  2


Q ss_pred             ceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAIL  380 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l  380 (483)
                      +.-|+++||||++|.+|   ||+++++++++.++.....+  +  .+.....++.++++.-  ....+..++++++.+.+
T Consensus       210 ~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~--~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  285 (364)
T PRK04781        210 DNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY--P--VPTPCAALAEQALSAPALAVTARRVAEVRAERERL  285 (364)
T ss_pred             CCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC--C--CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            23588899999998777   99999999999887654433  2  3444444454555321  11123455677888899


Q ss_pred             HHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc-cccccCCCCCceEEEccCCC
Q 011567          381 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR-SMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       381 ~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~-~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .+.|++++++....++.++++++.+++           ..++.+. +.++||.+.+... +..     +..+||++.   
T Consensus       286 ~~~L~~~~~~~~~~p~~g~f~~~~~~~-----------~~~~~~~-l~~~gI~v~~~~~~~~~-----~~~~Ris~~---  345 (364)
T PRK04781        286 HAALAQLPGVRRVYPSQGNFLLVRFDD-----------AEAAFQA-LLAAGVVVRDQRAAPRL-----SDALRITLG---  345 (364)
T ss_pred             HHHHHhCCCCCeECCCCCcEEEEEcCC-----------HHHHHHH-HHHCCeEEeeCCCCCCC-----CCeEEEeCC---
Confidence            999988767642335578888888731           1245555 4567999987642 221     345999985   


Q ss_pred             CHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRIS  475 (483)
Q Consensus       460 t~edi~~~~~~l~~~~  475 (483)
                      ++++.++++++|+++.
T Consensus       346 ~~~~~~~l~~al~~~~  361 (364)
T PRK04781        346 TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            7899999999998764

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.5e-19  Score=181.31  Aligned_cols=307  Identities=16%  Similarity=0.146  Sum_probs=203.7

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~~  184 (483)
                      ++..+++.+| |.+|..  +.+   ....+..|.           ... ..+|++.+|+++|.+ +.|++ +++++++..
T Consensus        30 ~~~~~~l~~ne~~~~~~--~~~---~~~~~~~Yp-----------~~~-~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~   92 (354)
T PRK04635         30 GRGDIWINANESPFNNE--YKL---DLARLNRYP-----------ECQ-PPELINAYSAYAGVAPEQILTSRGADEAIEL   92 (354)
T ss_pred             CCCcEEeeCCCCCCCCC--hhh---hhHHhccCC-----------CCC-HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHH
Confidence            3456888887 666653  222   112233332           222 578999999999854 44555 555688999


Q ss_pred             hhhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          185 AIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       185 ai~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++.+++++| |.|++..+.+..+...++..|.+++.++.+     |++.++    .. .       ++++|++..++|++
T Consensus        93 ~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~----~~-~-------~~~li~i~nP~NPT  160 (354)
T PRK04635         93 LIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIE----QL-D-------GAKLVFICNPNNPT  160 (354)
T ss_pred             HHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHH----hc-c-------CCCEEEEeCCCCCC
Confidence            999999988 889999999888777778889988887753     333343    11 1       25677777889999


Q ss_pred             CCccChHHHHHHHHHc-CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          259 GQIAPLDELIRLKEKY-RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~-~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      |.+.|.+++.++++.. ++++|+||+|..+...   .........  .+.-+++.||||++|.+|   ||+++++++++.
T Consensus       161 G~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~---~s~~~~~~~--~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~  235 (354)
T PRK04635        161 GTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE---YSVADLLAS--YPNLVVLRTLSKAFALAGARCGFTLANEELIEI  235 (354)
T ss_pred             CccCCHHHHHHHHHhCCCcEEEEeCchHhhccC---cchHHHHhh--CCCEEEEechHHHhhhhHHHHhhhhCCHHHHHH
Confidence            9999999999988874 7999999999754321   111111111  122477899999998777   999999999988


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.....++    +.+.....++.++++.  .+...+..+.++++.+.+.+.|++++++.+.. +.++++++.+++     
T Consensus       236 l~~~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~g~f~~~~~~~-----  305 (354)
T PRK04635        236 LMRVIAPY----PVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLE-GNGNYVLAKFDD-----  305 (354)
T ss_pred             HHhhcCCC----CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECC-CCCcEEEEECCC-----
Confidence            76543332    2234444445555532  11112345667778888999998875576654 467777776631     


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                            ..++.+. ++++||.++....+.     .++.+||++.   +++|+++++++|++
T Consensus       306 ------~~~~~~~-l~~~gv~v~~~~~~~-----~~~~lRis~~---~~e~~~~l~~al~~  351 (354)
T PRK04635        306 ------VDAVFKA-LWDAGIVARAYKDPR-----LANCIRFSFS---NRAETDKLIGLIRN  351 (354)
T ss_pred             ------HHHHHHH-HHHCCEEEEECCCCC-----CCCeEEEEeC---CHHHHHHHHHHHHH
Confidence                  1245554 456799997542211     1345999974   79999999999975

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.87  E-value=3e-20  Score=169.99  Aligned_cols=329  Identities=19%  Similarity=0.286  Sum_probs=222.8

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF  189 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~  189 (483)
                      ..+|+=|-.. -- +..+..+++.++.--    -    ..||..+...+||+..|+++|.|.++|++||+..|..+|+..
T Consensus        22 ~~vDLRSDTv-T~-PTdeMr~am~eA~vg----D----dVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~H   91 (384)
T KOG1368|consen   22 RSVDLRSDTV-TV-PTDEMRRAMAEASVG----D----DVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVH   91 (384)
T ss_pred             eccccccccc-cC-ChHHHHHHHhhcccC----c----ccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHH
Confidence            3455555322 12 334555555554332    1    257888888999999999999999999999999999999998


Q ss_pred             cc-CCcEEEEcCCchhHHHhH---hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC-
Q 011567          190 CK-KGDLIVADEGVHWGIQNG---LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG-  259 (483)
Q Consensus       190 ~~-~gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G-  259 (483)
                      +. ||..|++++..|-..++.   ..++|..+..++..     |++++|+.+....- +- ....+++|.+|...++.| 
T Consensus        92 c~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~G-D~-H~p~T~LIclENT~~~~Gg  169 (384)
T KOG1368|consen   92 CHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKG-DC-HMPPTKLICLENTHNNCGG  169 (384)
T ss_pred             hcCCCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCC-Cc-cCCCceEEEeeccccccCc
Confidence            75 899999999999766542   34567766666432     57788877763221 11 112589999999888755 


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHHHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQ  335 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~  335 (483)
                      .+.|   +.++.+||+++|+.|+.|.+.-+-.--..|-++-+..    ...|-+.-++||++| +.|..++|++++++.-
T Consensus       170 ~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~----~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA  245 (384)
T KOG1368|consen  170 KVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKIC----SAFDSVSICLSKGLGAPVGSVIVGSKDFIDKA  245 (384)
T ss_pred             eEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHH----HhhhhhhhhhhccCCCCcccEEEccHHHHHHH
Confidence            7888   4678889999999999998754332111122221111    122555558999998 6688899999988754


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~  414 (483)
                      +.....+..+.-...++|+|++-+|+.   +-.....-.++++.+.+.+....++++..+ .+++++.+.+..+.-    
T Consensus       246 ~~~RKalGGGmRQsGvLaaaaLval~~---~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~----  318 (384)
T KOG1368|consen  246 RHFRKALGGGMRQSGVLAAAALVALDE---NVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARL----  318 (384)
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccC----
Confidence            432222111112245677777766652   223566667788888888887656877654 688999988754332    


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         ..+++++. +++.||.+.....         .++|+.++...|+++++.+..++.+.
T Consensus       319 ---~~~~l~~~-~~k~gi~lm~~~s---------~r~Rivlh~Qvt~~~ve~~~~~~~k~  365 (384)
T KOG1368|consen  319 ---TAEELCKF-LEKNGILLMGGAS---------RRIRIVLHHQVTDEDVEYVKSVLSKK  365 (384)
T ss_pred             ---CHHHHHHH-HHHCCeEEeeccc---------cceEEEEEEecCHHHHHHHHHHHHHH
Confidence               23456775 5667999876422         23899999999999999999999543

>PLN02509 cystathionine beta-lyase

Probab=99.87  E-value=6e-20  Score=187.53  Aligned_cols=211  Identities=17%  Similarity=0.181  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+++++++++.|.+.++++++|.+|+..++ .+.++||.|+++...|+++.    ..+...|.++..++.+|+++++
T Consensus       133 pt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~  211 (464)
T PLN02509        133 PTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVA  211 (464)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHH
Confidence            578999999999999999999999998875544 57899999999998888765    3445678888888888888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|++|.+++++|.+.|+++|+++|++||+++|+|++++.+.++.   .    .+   ..+|+
T Consensus       212 ~ai~~----------~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~---p----l~---~gaDi  271 (464)
T PLN02509        212 AAIGP----------QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR---P----LE---LGADI  271 (464)
T ss_pred             HhCCc----------CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC---h----hh---cCCcE
Confidence            76632          37899999999999999999999999999999999999998765542   1    11   23489


Q ss_pred             EEccccccccCC----Cceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|++++.    ||+++.+ +.+.+.++....  ..++.++|+.|+.++..|+.+.   .++++.+++++.+.+.|
T Consensus       272 vv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~--~~g~~l~p~~A~l~lr~L~tL~---~R~~r~~~nA~~la~~L  346 (464)
T PLN02509        272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTMA---LRIEKQQENARKIAMYL  346 (464)
T ss_pred             EEecCcccccCCCccceeEEEeccHHHHHHHHHHHH--hcCCCcCHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Confidence            999999999742    6777654 444333221110  1123468999888888888774   47888899999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.|.+
T Consensus       347 ~~~p~V  352 (464)
T PLN02509        347 SSHPRV  352 (464)
T ss_pred             hcCCCc
Confidence            887654

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=8.2e-21  Score=177.26  Aligned_cols=346  Identities=16%  Similarity=0.186  Sum_probs=226.1

Q ss_pred             cccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHH-HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--
Q 011567           96 LESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--  168 (483)
Q Consensus        96 i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~-~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--  168 (483)
                      -++.-|.|+. +||+.+||..+.   -.+|+ +||.+.+++.+ +..+.=++... -+.+...+....+.+.|-+.-+  
T Consensus        62 YEkS~GNYlvDvDGN~lLDvYsQIsSvplGY-n~P~LvK~a~~p~~~~~lvnRPA-Lg~fP~kd~~~~l~~~ll~~APKG  139 (484)
T KOG1405|consen   62 YEKSIGNYLVDVDGNRLLDVYSQISSVPLGY-NNPALVKAAQQPQNATMLVNRPA-LGNFPPKDFAEKLRQSLLSIAPKG  139 (484)
T ss_pred             hhhhcCceEEecCCCeeehhhhhhcccccCC-CCHHHHHHhcChHHHHHHhcccc-ccCCChhhHHHHHHHHHHhhCcch
Confidence            4678899999 899999999875   68999 89999888764 22211111000 0122233555666665555543  


Q ss_pred             CCCEEEecccHHHHHhhhhhhc------cC-------------------C----cEEEEcCCchhHHHhHhhhcCCeEE-
Q 011567          169 TPDSILYSYGLSTMFSAIPCFC------KK-------------------G----DLIVADEGVHWGIQNGLYLSRSTVV-  218 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~~------~~-------------------g----diI~~~~~~h~s~~~g~~~s~~~v~-  218 (483)
                      .......-+|+.||+.|+++.-      +|                   |    .++.+...+|+.+...+.-..++.+ 
T Consensus       140 ~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIH  219 (484)
T KOG1405|consen  140 QKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIH  219 (484)
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCcccc
Confidence            3455556889999998875421      11                   1    2455677888877766665554321 


Q ss_pred             -----------------Eec------CC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hH
Q 011567          219 -----------------YFK------HN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LD  265 (483)
Q Consensus       219 -----------------~~~------~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~  265 (483)
                                       .++      +|      .++++|+++.+...    +..++++||+||+++.+|+-..    ++
T Consensus       220 KldiPaFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~----k~~pVaaiIvEPIQsEGGDnhaSp~Ff~  295 (484)
T KOG1405|consen  220 KLDIPAFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRK----KKKPVAAIIVEPIQSEGGDNHASPDFFR  295 (484)
T ss_pred             ccCCCCCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhh----cCCCeEEEEeechhccCCCccCCHHHHH
Confidence                             011      11      25567777766543    2346899999999999997543    89


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      .|+++|+||++.+|+||+|++|  |.||..++ ||++++ +.+|++  ||||-|-+ |||.-..+     ++.+...-.|
T Consensus       296 kLrdi~~Kh~v~fivDEVQTGg--GaTGk~WaHehw~l~-~PpD~v--TFSKK~q~-gGffh~~~-----frpn~pYrif  364 (484)
T KOG1405|consen  296 KLRDITKKHGVAFIVDEVQTGG--GATGKFWAHEHWNLD-SPPDVV--TFSKKFQT-GGFFHDEE-----FRPNEPYRIF  364 (484)
T ss_pred             HHHHHHHhcCeEEEeeeeecCC--CccCceeeehhcCCC-CCccce--ehhhhhhc-CccccCcc-----cCCCchHHHh
Confidence            9999999999999999999874  77887655 999996 677998  79998854 56654322     2222111122


Q ss_pred             cC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 011567          345 SA-SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLL  419 (483)
Q Consensus       345 s~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~  419 (483)
                      .+ -..|.-+..+.++++.++++ ++.++....++.|.++|.++    ++.--.-.+++.++.+.+++.        ..-
T Consensus       365 NTWmGdP~k~lll~~vv~~I~~~-~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~--------~~R  435 (484)
T KOG1405|consen  365 NTWMGDPSKNLLLEEVVQEIKRE-DLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSG--------SIR  435 (484)
T ss_pred             hhhcCChHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCCh--------HHH
Confidence            21 12455555566677777764 58999999999999998765    221111133566676666432        223


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+++.. ++.+|+.+..-..         .+||+.|+...++...+-++++++++++.
T Consensus       436 dk~i~~-~~~nGv~~GGCg~---------~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  436 DKLILI-ARLNGVNLGGCGD---------KSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             HHHHHH-HHHcCceeccccc---------ceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence            345553 5557888753221         34999999999999999999999988753

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=4.5e-19  Score=176.51  Aligned_cols=306  Identities=19%  Similarity=0.192  Sum_probs=201.4

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEeccc-HHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYG-LSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG-~~a~~~  184 (483)
                      |..++||..+ +.++  .+|.+.+++.+.+.....+      .|. ..-..+++++++++++.+ +.+++++| ++++..
T Consensus        17 ~~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~Y~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~   87 (337)
T PRK03967         17 GNYRIWLDKNENPFD--LPEELKEEIFEELKRVPFN------RYP-HITSDPLREAIAEFYGLDAENIAVGNGSDELISY   87 (337)
T ss_pred             CCceEEecCCCCCCC--CCHHHHHHHHHHhhcCccc------cCC-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence            4567999987 4554  4588999998888653221      121 112477999999999853 45555555 577776


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++.++  +||.|+++.+.|..+....+..|.+++.++..     |++++++.+    .       +++++++..+++++|
T Consensus        88 ~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~----~-------~~~~v~~~~P~NPtG  154 (337)
T PRK03967         88 LVKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA----K-------NASAVFICSPNNPTG  154 (337)
T ss_pred             HHHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc----c-------CCCEEEEeCCCCCCC
Confidence            66666  68999999999987777677888888777643     345554432    1       134555566789999


Q ss_pred             CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHH
Q 011567          260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQR  336 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~  336 (483)
                      .+.+.++|.++++ +++++|+||+|.... +.   ........  .+..|+++||||++|..|   ||+++++++++.++
T Consensus       155 ~~~~~~~l~~i~~-~~~~ii~De~y~~~~-~~---~~~~~~~~--~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~  227 (337)
T PRK03967        155 NLQPEEEILKVLE-TGKPVVLDEAYAEFS-GK---SLIGLIDE--YPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALY  227 (337)
T ss_pred             CCCCHHHHHHHHh-cCCEEEEECchhhhc-cc---chHHHHhh--CCCEEEEecchHhhcchhhhheeeecCHHHHHHHH
Confidence            9999999999995 799999999997532 21   11111111  122588899999998666   99999999998887


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                      .....+    +.+.+...++.++++..+...+.++...++.+.+.+.|.+. .    .+++++++++.+           
T Consensus       228 ~~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~----~~~~~~~~~~~~-----------  287 (337)
T PRK03967        228 RIKPPF----SLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY-A----YPSDANFLLLKL-----------  287 (337)
T ss_pred             hhcCCC----CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC-c----CCCCCcEEEEhH-----------
Confidence            654332    23455555555555422211234455566667777777653 1    134677776654           


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                          .+.+.++ ++||.+++... .     .++.+|+++.   +.++.++++++|+++..
T Consensus       288 ----~~~~~l~-~~gi~v~~~~~-~-----~~~~~Ri~~~---~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        288 ----DAYDYLL-ENGIVVRKLSG-R-----LEGHIRVTVG---KREENDEFIKALKEIKE  333 (337)
T ss_pred             ----HHHHHHH-HCCEEEEeCCC-C-----CCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence                1455555 46999986421 1     1345999985   67888888888877654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=2.2e-19  Score=171.62  Aligned_cols=338  Identities=19%  Similarity=0.266  Sum_probs=232.1

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccCh--HHHHHH-HHHHHhhhCCCCEEEe-cccHHHHH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--DVHLDC-EARIAKFLGTPDSILY-SYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~--~~~~~l-~~~La~~~g~e~~i~~-~sG~~a~~  183 (483)
                      +.|++..+ ||    .+|.+.+|.-..+. +|.-|..|-|.+.|+.  |..++| .++..++||.+.+-+- .||+.||.
T Consensus        27 ~~ieLIASEN~----~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~  102 (413)
T COG0112          27 EHIELIASENF----TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQ  102 (413)
T ss_pred             hceeeeecccc----CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHH
Confidence            45666665 66    66899999887775 6999999999554442  333333 3555668899877555 89999999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHh---HhhhcCCe--EEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQN---GLYLSRST--VVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~---g~~~s~~~--v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++.++.+|||.|+--...|+..+.   .+..+|..  .+.++.+      |+|.++++.++..         .++||.-
T Consensus       103 av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k---------PK~ii~G  173 (413)
T COG0112         103 AVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK---------PKLIIAG  173 (413)
T ss_pred             HHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC---------CCEEEEC
Confidence            9999999999999876666655332   23444443  3333332      8899999888765         3466653


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccH-H
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA-R  330 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~-~  330 (483)
                      .  +.--...|+++++++|++-|++|++|-+|-.|...   .|..  .+ +-...|++++|.+|+| |+.||++++++ +
T Consensus       174 ~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA---~G~~--p~-P~~~AdvVTtTTHKTlrGPrGG~Il~~~ee  245 (413)
T COG0112         174 G--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIA---GGVH--PN-PLPHADVVTTTTHKTLRGPRGGIILTNDEE  245 (413)
T ss_pred             c--cccccccCHHHHHHHHHHhCceEEehHHHHHHHHh---cccC--CC-CCCccceEeCCcccCCCCCCceEEEeccHH
Confidence            2  22245568999999999999999999999777553   1221  11 1133699999999999 78999999885 7


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKS  408 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~  408 (483)
                      +.+.+...-.+...++.+....++-+.+.-+.++.+ .+..+++.+|++.|.+.|.+. |+.+.+. .++.++.+.+.+.
T Consensus       246 l~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~  324 (413)
T COG0112         246 LAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSK  324 (413)
T ss_pred             HHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccC
Confidence            777776544444444433334444444444545443 568889999999999999985 9998753 4677777777532


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC-CCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC-RLPVGIRLFVSA----AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~-~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~  477 (483)
                       +       ...+-++.+|.+.||.+.....|.-+.. ..+.||||..++    ...++|++++.+.|.+++..
T Consensus       325 -~-------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         325 -G-------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             -C-------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence             1       1113455678888998876654433222 246789996544    45688999999988888753

>PRK02769 histidine decarboxylase; Provisional

Probab=99.86  E-value=3.4e-19  Score=178.55  Aligned_cols=287  Identities=15%  Similarity=0.100  Sum_probs=207.8

Q ss_pred             ChHHHHHHHHHHHhhhCCC--C--EEEecccHHHHHhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---
Q 011567          152 TIDVHLDCEARIAKFLGTP--D--SILYSYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---  222 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e--~--~i~~~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---  222 (483)
                      +.+...++.+.+++++|.+  +  .++.++|+++|..++.+..  .+++.|++.+..|.|+.++++..+.....++.   
T Consensus        63 ~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~  142 (380)
T PRK02769         63 SFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPN  142 (380)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCC
Confidence            4567888999999999964  3  3566888999887765442  46789999999999999998877765554443   


Q ss_pred             --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC---cEEEEeCccccccccCCCCccc
Q 011567          223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR---FRVFLDESNSFGVLGRSGRGLT  297 (483)
Q Consensus       223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~---~~li~DEa~s~g~lg~~G~g~~  297 (483)
                        -|+++|++.+++..       ..+++|++....+.+|.+.|+++|.++|++||   +++++|.++++|.+... +.. 
T Consensus       143 g~id~~~L~~~i~~~~-------~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~-~~~-  213 (380)
T PRK02769        143 GEIDYDDLISKIKENK-------NQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFV-NNP-  213 (380)
T ss_pred             CcCcHHHHHHHHHhCC-------CCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeeccc-Ccc-
Confidence              27888988887642       13678888888999999999999999999998   79999999998765311 000 


Q ss_pred             cccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhc-----CCceeecCCCcHHHHHHHHHHHHHHhcC--cH
Q 011567          298 EHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLS-----SSGYVFSASLPPYLASAAITAIDVLEEN--PD  368 (483)
Q Consensus       298 ~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~-----~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~  368 (483)
                      ..++.. ..+|.++.|.+|.++ +.| |+++.+++..+.+...     ...+++.++-|...+++..++++.+...  .+
T Consensus       214 ~~~d~~-~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~  292 (380)
T PRK02769        214 PPFSFA-DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQ  292 (380)
T ss_pred             ccCCcc-CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHH
Confidence            113333 267999999999998 544 6766666655544221     1112334455556666677788877532  46


Q ss_pred             HHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCC
Q 011567          369 LITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP  448 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~  448 (483)
                      ..++..++++++.++|++. |+++..++.++++.+..++       +     ++     . +|..+.+.          +
T Consensus       293 ~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~-------~-----~~-----~-~~w~l~~~----------~  343 (380)
T PRK02769        293 RVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS-------E-----RI-----W-KKWHLATS----------G  343 (380)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC-------H-----HH-----H-hCeeEccc----------C
Confidence            7888999999999999885 8888878888888775321       1     11     1 35655543          1


Q ss_pred             CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          449 VGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       449 ~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+|+++...+|++.+|++++.|.+..+.
T Consensus       344 ~~~hi~~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        344 NQAHIITMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            34899999999999999999999887764

>PLN02397 aspartate transaminase

Probab=99.86  E-value=1e-19  Score=186.26  Aligned_cols=328  Identities=15%  Similarity=0.099  Sum_probs=204.8

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-C------CCEE-----Eec
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-T------PDSI-----LYS  176 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-~------e~~i-----~~~  176 (483)
                      ...||++.+.+-....+|.+.+++.++....-..  +.-..|+...-..+|++.+++++. .      ++.+     +.+
T Consensus        48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g  125 (423)
T PLN02397         48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAG--SRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG  125 (423)
T ss_pred             cceEecccceeeCCCCCcccchHHHHHHHHhhcc--CCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccc
Confidence            3468888775434334455555555553221000  000123333344567777777652 1      1212     223


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      +|+.++..++.++..+||.|++++++|..+...+...|.+++.++.       .|++.+++.+++...       +++++
T Consensus       126 ~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~-------~~~~i  198 (423)
T PLN02397        126 TGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPD-------GSFVL  198 (423)
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCC-------CCEEE
Confidence            4444455555555569999999999999999999999999887753       156667666654321       36788


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc--cccCCCCCceeEEEccccccccCCC--
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT--EHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~--~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      ++...+|++|.+.+   +++|+++|++||+++|.||+|....++.......  ..+.-. .+.-|+++||||+++..|  
T Consensus       199 ~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~~vI~~~SfSK~~~~~G~R  277 (423)
T PLN02397        199 LHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED-GHEILVAQSYAKNMGLYGER  277 (423)
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc-CCcEEEEEECcccCCCcccc
Confidence            88889999999988   7888999999999999999998765532101111  111101 122588899999999776  


Q ss_pred             -ceee---ccHHHHHH----HHhcCCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhccC
Q 011567          323 -GFCT---GSARVVDH----QRLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       323 -G~i~---~~~~~~~~----~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~~  387 (483)
                       ||++   +++++++.    +...... .+. +.+.....++.++++.-       +...+.++.++++.+.+.+.|+++
T Consensus       278 vG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        278 VGALSVVCKSADVAVRVKSQLKLIARP-MYS-NPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHHHHhc-ccC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             9973   45555443    2222111 121 12344444444444211       111346778888999999999887


Q ss_pred             CC----ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          388 HG----LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       388 ~~----~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                       +    +.+..+.++.++++.+.             .+++++++++.||.+..            . .|+++.. .+++.
T Consensus       356 -~~~~~~~~~~p~gg~fl~~~l~-------------~~~~~~Ll~~~~V~v~~------------~-~Ri~~~~-~~~~~  407 (423)
T PLN02397        356 -GSPGDWSHITKQIGMFSFTGLN-------------KEQVDRMTKEYHIYMTR------------D-GRISMAG-LSSKN  407 (423)
T ss_pred             -CCCCCCCcccCCceEEEecCCC-------------HHHHHHHHHhCCEEECC------------C-CeEEEee-CCHHH
Confidence             5    55544545666666551             14677788888999952            2 2898843 78999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          464 LVKACESLKRISA  476 (483)
Q Consensus       464 i~~~~~~l~~~~~  476 (483)
                      +++++++|++++.
T Consensus       408 i~~~~~~i~~~~~  420 (423)
T PLN02397        408 VPYLADAIHAVVT  420 (423)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999874

>PRK08354 putative aminotransferase; Provisional

Probab=99.86  E-value=1.2e-18  Score=171.55  Aligned_cols=295  Identities=15%  Similarity=0.127  Sum_probs=187.5

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      ..+|||+.+ |+++   +|.+.+++.+.++...        .|.   ....+++.+++++|. +.++.+++++++..++.
T Consensus         8 ~~~i~l~~~~np~~---p~~~~~a~~~~~~~~~--------~yp---~~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~   72 (311)
T PRK08354          8 EGLIDFSASVNPYP---PEWLDEMFERAKEISG--------RYT---YYEWLEEEFSKLFGE-PIVITAGITEALYLIGI   72 (311)
T ss_pred             cceeEecCCCCCCC---CHHHHHHHHHHHHHhh--------cCC---ChHHHHHHHHHHHCC-CEEECCCHHHHHHHHHH
Confidence            468999998 7764   3788888887765421        111   135789999999984 44445556678776664


Q ss_pred             hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---h
Q 011567          188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---L  264 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L  264 (483)
                      .+ .+||.|+++.++|..+...++..|.+++.++ .|++.+++.+++          +..++++. ++|++|.+.+   +
T Consensus        73 ~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~----------~~~vi~~~-P~NPTG~~~~~~~l  139 (311)
T PRK08354         73 LA-LRDRKVIIPRHTYGEYERVARFFAARIIKGP-NDPEKLEELVER----------NSVVFFCN-PNNPDGKFYNFKEL  139 (311)
T ss_pred             hh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC-CCHHHHHHhhcC----------CCEEEEec-CCCCCCCccCHHHH
Confidence            44 4899999999999999999999999887764 467777665532          23444444 4789999988   6


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCc
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~  341 (483)
                      ++|+++|++||+++|+||+|..++.+.  ..      .. .+..++++||||++|.+|   ||+++   ..+.++.....
T Consensus       140 ~~l~~~a~~~~~~li~De~y~~f~~~~--~~------~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~  207 (311)
T PRK08354        140 KPLLDAVEDRNALLILDEAFIDFVKKP--ES------PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMP  207 (311)
T ss_pred             HHHHHHhhhcCcEEEEeCcchhccccc--cc------cC-CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCC
Confidence            778888999999999999998765432  11      11 234688999999999777   99988   44555443322


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      +    +.+....+++.+.++   ..   .++++++.+.+++..+.+.+.... .+.++++.+.+.+           ..+
T Consensus       208 ~----~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~-----------~~~  265 (311)
T PRK08354        208 W----SIGSTGYAFLEFLIE---DD---FEHLRKTMPLIWREKERFEKALYV-KSDANFFIKDVGD-----------AEK  265 (311)
T ss_pred             c----cCCHHHHHHHHHHHH---hH---HHHHHHHHHHHHHHHHHHHHhcCC-CCCCcEEEEECCC-----------HHH
Confidence            2    123333333322222   11   122223333333322221111111 3456666654421           124


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +++.+ .++||.+.+...+..     ++.+||++.   +.++.+++.++++++
T Consensus       266 ~~~~l-~~~gv~v~~g~~f~~-----~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        266 FVEFL-KRNGILVRDCTSFGL-----PGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             HHHHH-HHCCeEEEecccCCC-----CCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            66654 456999998765432     345999985   567788888877764

>PLN02880 tyrosine decarboxylase

Probab=99.86  E-value=2.9e-19  Score=184.81  Aligned_cols=315  Identities=12%  Similarity=0.101  Sum_probs=205.5

Q ss_pred             ChHHHHHHHHHHHhhhCCCC---------EEEecccHHHHHhhhhhhcc-----------CCcEEEEcCCchhHHHhHhh
Q 011567          152 TIDVHLDCEARIAKFLGTPD---------SILYSYGLSTMFSAIPCFCK-----------KGDLIVADEGVHWGIQNGLY  211 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e~---------~i~~~sG~~a~~~ai~~~~~-----------~gdiI~~~~~~h~s~~~g~~  211 (483)
                      ...+..++-+++++++|.++         .++.++|++||..++.+...           +.-+|++++..|+|+.+++.
T Consensus       120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~  199 (490)
T PLN02880        120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ  199 (490)
T ss_pred             cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence            45677788888899888654         56778889999887644321           23367789999999999999


Q ss_pred             hcCCe---EEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe
Q 011567          212 LSRST---VVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       212 ~s~~~---v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D  281 (483)
                      +.|..   ++.++.       -|+++|++.+++...+    .....+|+...-..++|.+.|+++|.++|++||+|+++|
T Consensus       200 ~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~----g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVD  275 (490)
T PLN02880        200 IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSS----GLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVD  275 (490)
T ss_pred             HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHC----CCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEe
Confidence            88862   444433       2788999988765432    223455666656667899999999999999999999999


Q ss_pred             CccccccccC-CCCccccccCCCCCceeEEEccccccccC-CC-ceeeccH-H-HHHHHHhcCCceeecC------CCc-
Q 011567          282 ESNSFGVLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSA-R-VVDHQRLSSSGYVFSA------SLP-  349 (483)
Q Consensus       282 Ea~s~g~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~G-G~i~~~~-~-~~~~~~~~~~~~~fs~------~~~-  349 (483)
                      .+|+++.+-. ..+..  ..|+  ..+|.++.+++|+++. .| |++..++ . ..+.+.. ...|.+..      ..+ 
T Consensus       276 aA~gg~~~~~~~~~~~--l~gi--e~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~-~~~Yl~~~~~~~~~~~~~  350 (490)
T PLN02880        276 AAYAGSACICPEYRHY--IDGV--EEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLST-NPEFLKNKASQANSVVDY  350 (490)
T ss_pred             hhhHHHHHhCHHHHHH--hcCc--hhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHcc-CHHHhcCccccccCCCCh
Confidence            9998875421 11111  1233  3468999999999973 23 5544332 2 2222211 11121110      000 


Q ss_pred             ---------HHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          350 ---------PYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       350 ---------p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                               .+.+.....+++.+-.  ..+.+++..++++++.+.|.+.+++++..++..+++.+++.+.....+.....
T Consensus       351 ~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~  430 (490)
T PLN02880        351 KDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKL  430 (490)
T ss_pred             hccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHH
Confidence                     0111222233444322  12344444589999999998888999988888889999986532222222445


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC-CHHHHHHHHHHHHHHHHHHHhc
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH-SEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~-t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ..++.+++.+++.++++......      ...+|+++.... |++|++.+++.|++...+++.+
T Consensus       431 n~~l~~~l~~~g~~~v~~t~~~g------~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~  488 (490)
T PLN02880        431 NHDLLDAVNSSGKIFISHTVLSG------KYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK  488 (490)
T ss_pred             HHHHHHHHHhCCCEEEEEEEECC------EEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            56777777777778887654322      134999886555 5699999999999998887654

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=2e-19  Score=181.77  Aligned_cols=213  Identities=15%  Similarity=0.130  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||++.|.+.++++++|++|+..++.++.++||.|++..+.|.+....+.    ..+.++..++..|+++++
T Consensus        61 p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~  140 (388)
T PRK07811         61 PTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVR  140 (388)
T ss_pred             ccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHH
Confidence            4578999999999999999999999999999999999999999999888876544332    246677777777888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+.+          ++++|++|.+.+++|.+.++++|+++|++||+++|+||+++.+..+.   .    .+   ...|+
T Consensus       141 ~~i~~----------~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~---p----~~---~gaDi  200 (388)
T PRK07811        141 AAITP----------RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQ---P----LA---LGADV  200 (388)
T ss_pred             HhcCc----------CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCC---c----hh---hCCcE
Confidence            76643          26899999999999999999999999999999999999998654321   1    11   23489


Q ss_pred             EEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.+++.    ||++++ ++++.+.++...  ...+...+|..+..+...++.+   +.++++..++...+.+.|
T Consensus       201 vv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~--~~~g~~~s~~~a~l~~~~L~tl---~~R~~~~~~na~~la~~L  275 (388)
T PRK07811        201 VVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQ--NGAGAVPGPFDAYLTLRGLKTL---AVRMDRHSENAEAVAEFL  275 (388)
T ss_pred             EEecCceeecCCCCcEEEEEEECCHHHHHHHHHHH--HhcCCCCCHHHHHHHHhccCcH---HHHHHHHHHHHHHHHHHH
Confidence            999999999853    587665 566666554321  1123345677666555555543   457788888999999999


Q ss_pred             ccCCCce
Q 011567          385 SDIHGLS  391 (483)
Q Consensus       385 ~~~~~~~  391 (483)
                      ++.+++.
T Consensus       276 ~~~p~v~  282 (388)
T PRK07811        276 AGHPEVS  282 (388)
T ss_pred             HhCCCee
Confidence            8876543

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.86  E-value=4.2e-19  Score=180.32  Aligned_cols=331  Identities=12%  Similarity=0.078  Sum_probs=220.3

Q ss_pred             CChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC----CEEE--ecccHHHHHhhhhhhc----c-
Q 011567          124 GHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP----DSIL--YSYGLSTMFSAIPCFC----K-  191 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~i~--~~sG~~a~~~ai~~~~----~-  191 (483)
                      .+|++.+++.+.+.+ ++..+..+    .......+..+++++++|.+    +.++  .++|++||..++.+..    . 
T Consensus        53 ~~p~~~~~~~~~l~~~~~np~s~~----~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~  128 (431)
T TIGR01788        53 MEPEARKLMDETINKNMIDKDEYP----QTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKR  128 (431)
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCc----cHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHH
Confidence            468888888888874 33322222    23378888999999999976    3443  4888999988875432    1 


Q ss_pred             --------CCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          192 --------KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       192 --------~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                              ++..|++....|.++.+++...|.++..++.+      |+++|++.+++          .+.+|++...+++
T Consensus       129 ~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~----------~t~lV~~t~g~t~  198 (431)
T TIGR01788       129 MEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDE----------NTIGVVCILGTTY  198 (431)
T ss_pred             HHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhh----------CCeEEEEEeCCCC
Confidence                    12479999999999999998888777666532      56777777753          2678888889999


Q ss_pred             CCCccChHHHHHHHHHc------CcEEEEeCccccccccC-CCCccccccCCCCCceeEEEccccccc-cCCC-ceeecc
Q 011567          258 SGQIAPLDELIRLKEKY------RFRVFLDESNSFGVLGR-SGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGS  328 (483)
Q Consensus       258 ~G~i~~L~~l~~l~~k~------~~~li~DEa~s~g~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~  328 (483)
                      +|.+.|+++|.++|++|      |+++++|.+|+++.+.- .++ ..  ++.....+|.++.|.+|.+ |+.| |+++.+
T Consensus       199 tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~-~~--~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r  275 (431)
T TIGR01788       199 TGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD-LE--WDFRLPRVKSINVSGHKYGLVYPGVGWVIWR  275 (431)
T ss_pred             CcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC-ch--hhcCCCCceEEEECchhccCCCCCcEEEEEe
Confidence            99999999999999999      99999999999665210 011 11  1122356799999999987 7666 766544


Q ss_pred             HH--HHHHHHhc----C---CceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecC-C
Q 011567          329 AR--VVDHQRLS----S---SGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASN-P  396 (483)
Q Consensus       329 ~~--~~~~~~~~----~---~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~  396 (483)
                      +.  +.+.+...    +   ..++...+-+...+.+....+..+-  ...++.++..++++++.+.|++.+++++..+ +
T Consensus       276 ~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~  355 (431)
T TIGR01788       276 DEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGS  355 (431)
T ss_pred             ChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCC
Confidence            33  22322111    0   0112222222112223334444432  2246788889999999999999888998865 6


Q ss_pred             CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          397 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       397 ~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ..+++.+++++...    ......++.+. |.++|+.+.....|..-+.  ..-+|+++...++++.++++++.|++++.
T Consensus       356 ~~~iV~Fr~~~~~~----~~~~~~~l~~~-L~~~G~~~~~~~~p~~~~~--~~~lR~~~~~~~~~~~~~~~~~~~~~~~~  428 (431)
T TIGR01788       356 GIPLVAFKLKDDAD----PGYTLYDLSHR-LRERGWIVPAYTLPKNAED--IVVMRIVVREGFSRDLAELLIEDIEAALA  428 (431)
T ss_pred             CceEEEEEeCCCCC----CCcCHHHHHHH-HHHCCCcccCCCCCCccCC--eEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            78899999864221    11124456665 5567886543322211000  01289999889999999999999999886


Q ss_pred             HH
Q 011567          477 VV  478 (483)
Q Consensus       477 ~~  478 (483)
                      .+
T Consensus       429 ~~  430 (431)
T TIGR01788       429 YL  430 (431)
T ss_pred             hh
Confidence            54

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=2e-19  Score=179.97  Aligned_cols=212  Identities=15%  Similarity=0.145  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++-|.+.+++|+||++|+.+++.++.++||.|+++...|+++...+    ...|.++..++..|+++++
T Consensus        62 Pt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~  141 (395)
T PRK08114         62 LTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIA  141 (395)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence            567889999999999999999999999999999999999999999887877766544    4457889899888998888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +.++.          ++++|++|.+.|++|.+.|+++|+++|+++|  +++++|.+++.+.+          +......+
T Consensus       142 ~~l~~----------~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~----------~~pl~~Ga  201 (395)
T PRK08114        142 KLIQP----------NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL----------FKALDFGI  201 (395)
T ss_pred             HhcCC----------CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc----------cCHHHcCC
Confidence            87743          3789999999999999999999999999985  99999999976532          11112345


Q ss_pred             eEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          308 DIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |+++.|.+|.+++    .+|.++++++..+.++..  ....+..++|..|...+..|+-+   +-+.++..+++..+.+.
T Consensus       202 Divv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~--~~~~G~~~~p~~a~l~~rgl~TL---~lR~~~~~~na~~va~~  276 (395)
T PRK08114        202 DISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN--SYLMGQMVDADTAYMTSRGLRTL---GVRLRQHEESSLKVAEW  276 (395)
T ss_pred             cEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH--HHhccCCCCHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHH
Confidence            9999999999973    347777777765554422  22334567888887776666544   34778888899999999


Q ss_pred             hccCCCc
Q 011567          384 LSDIHGL  390 (483)
Q Consensus       384 L~~~~~~  390 (483)
                      |++.|.+
T Consensus       277 L~~hp~V  283 (395)
T PRK08114        277 LAEHPEV  283 (395)
T ss_pred             HHcCCCE
Confidence            9887643

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.85  E-value=1.3e-18  Score=175.68  Aligned_cols=312  Identities=18%  Similarity=0.207  Sum_probs=204.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      ++-.+++.+.++.. .       . ...+...+||+++++++|.+.++.+++|++|+..++.++ .++||.|++....|.
T Consensus        14 ~~e~~~~~~~l~~~-~-------~-~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~   84 (379)
T PRK11658         14 DEELAAVKEVLRSG-W-------I-TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWV   84 (379)
T ss_pred             HHHHHHHHHHHHcC-C-------c-cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHH
Confidence            45577777777652 2       1 122457899999999999999999999999999999998 799999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++...+...|.+++.++.+      |++++++.+..          ++++|+..+   .+|...|+++|.++|++||+++
T Consensus        85 ~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~----------~tkav~~~~---~~G~~~d~~~i~~~a~~~gi~v  151 (379)
T PRK11658         85 STLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP----------RTKAIIPVH---YAGAPADLDAIRAIGERYGIPV  151 (379)
T ss_pred             HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc----------CCeEEEEeC---CCCCcCCHHHHHHHHHHcCCeE
Confidence            9988888889998877642      56777766532          255665332   3689999999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeec-cHHHHHHHHh---cCCc------------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTG-SARVVDHQRL---SSSG------------  341 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~-~~~~~~~~~~---~~~~------------  341 (483)
                      |+|++|++|..- .|+.+    +-  ...++..++-+|.+. +.||+++. ++++.+.++.   .+..            
T Consensus       152 i~D~a~a~g~~~-~~~~~----g~--~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~  224 (379)
T PRK11658        152 IEDAAHAVGTYY-KGRHI----GA--RGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRA  224 (379)
T ss_pred             EEECCCccCCeE-CCeec----CC--CCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCC
Confidence            999999977532 12211    11  122566555568774 55788776 4666655432   1100            


Q ss_pred             --e-----eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC----C-CEEEEEecCCC
Q 011567          342 --Y-----VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE----S-PIVFLILEKST  409 (483)
Q Consensus       342 --~-----~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----~-~i~~l~l~~~~  409 (483)
                        +     .+...++.+.+|.++..++.++   +..++-+++.+++.+.|++++...+..+..    + .++.+.+....
T Consensus       225 ~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~---~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
T PRK11658        225 PQAEVLTPGYKYNLADINAAIALVQLAKLE---ALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER  301 (379)
T ss_pred             CcceeeccccccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc
Confidence              0     0112256667777777776654   467778888889999998774332221111    1 23444443211


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---------ccCCCCC-------ceEEEccCCCCHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---------DKCRLPV-------GIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---------~~~~~~~-------~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ...     ...++.+. |+++||.+.....+..         .....|.       .|.+.++..+|++|+++++++|++
T Consensus       302 ~~~-----~r~~~~~~-L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~  375 (379)
T PRK11658        302 CGI-----SRDALMEA-LKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQ  375 (379)
T ss_pred             ccC-----CHHHHHHH-HHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            000     12245654 5566887653221110         0011122       277777888999999999999998


Q ss_pred             HH
Q 011567          474 IS  475 (483)
Q Consensus       474 ~~  475 (483)
                      ++
T Consensus       376 ~~  377 (379)
T PRK11658        376 IA  377 (379)
T ss_pred             HH
Confidence            75

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.85  E-value=4.3e-19  Score=184.12  Aligned_cols=329  Identities=15%  Similarity=0.165  Sum_probs=204.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCC-CCcccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhh---hhh-hccCCc---
Q 011567          124 GHEKLLESCTSALEKYGVGSCGP-RGFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSA---IPC-FCKKGD---  194 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~-~~~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~a---i~~-~~~~gd---  194 (483)
                      .+|.+.+++.+...-++.....+ ....|..+...++++.+++++|.+.+.++ ++|+.+...+   ++. +..+||   
T Consensus        82 ~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~  161 (481)
T PRK04366         82 YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKR  161 (481)
T ss_pred             CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCC
Confidence            45778887776522222222222 13556778889999999999999877666 5665544332   332 344554   


Q ss_pred             -EEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-cChHHH
Q 011567          195 -LIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-APLDEL  267 (483)
Q Consensus       195 -iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~~L~~l  267 (483)
                       .|++....|.++...+...|.+++.++.+     |+++|++.+..          .+++|++.... ++|.+ .|+++|
T Consensus       162 ~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~----------~t~~V~v~~Pn-~tG~~~~dl~eI  230 (481)
T PRK04366        162 TEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE----------DTAALMLTNPN-TLGLFERNILEI  230 (481)
T ss_pred             CEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhccc----------CCeEEEEeCCC-CccccchHHHHH
Confidence             88888899999999999999988887652     66677666532          24555555544 67877 589999


Q ss_pred             HHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-------CceeeccHHHHHHHHh---
Q 011567          268 IRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-------GGFCTGSARVVDHQRL---  337 (483)
Q Consensus       268 ~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-------GG~i~~~~~~~~~~~~---  337 (483)
                      .++|+++|+++++|+++..+.+|....   ..     ..+|+++++.+|+|+.+       +|+++.++++.+.+..   
T Consensus       231 ~~~a~~~gal~iVD~a~~~~~~g~~~~---~~-----~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v  302 (481)
T PRK04366        231 AEIVHEAGGLLYYDGANLNAILGKARP---GD-----MGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVV  302 (481)
T ss_pred             HHHHHHcCCEEEEEecChhhhcccCCc---cc-----cCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCee
Confidence            999999999999999998665543111   11     24599999999999622       2677777777665521   


Q ss_pred             --cCCceeecC------------CCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 011567          338 --SSSGYVFSA------------SLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV  401 (483)
Q Consensus       338 --~~~~~~fs~------------~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~  401 (483)
                        .+.+|.+..            +.+.+.+.++...+..+-.+  .+..++..+++++++++|.++  +.+... ...+.
T Consensus       303 ~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~-~~~~~  379 (481)
T PRK04366        303 EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYD-RPCMH  379 (481)
T ss_pred             eccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCC-CCeeE
Confidence              111222211            11222233333333333211  234566777899999999886  333211 11122


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      .+.+....  .........++.+++. ++||.+....+|..    ....+|++++..+|++|||+++++|+++.+++..+
T Consensus       380 ~~~~~~~~--~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p~~----~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~  452 (481)
T PRK04366        380 EFVLSGKK--LKETGVRTLDIAKRLL-DYGFHPPTIYFPLI----VPEALMIEPTETESKETLDAFIAAMKQIAEEAKEN  452 (481)
T ss_pred             EEEEECcc--ccccCCCHHHHHHHHH-HCCccCCccccccc----cCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            22221110  0000112446777655 56998764444322    12359999999999999999999999998876543

>PLN02590 probable tyrosine decarboxylase

Probab=99.85  E-value=1.8e-18  Score=179.05  Aligned_cols=313  Identities=12%  Similarity=0.139  Sum_probs=209.8

Q ss_pred             hHHHHHHHHHHHhhhCCCC---------EEEecccHHHHHhhhhhhcc-----------CCcEEEEcCCchhHHHhHhhh
Q 011567          153 IDVHLDCEARIAKFLGTPD---------SILYSYGLSTMFSAIPCFCK-----------KGDLIVADEGVHWGIQNGLYL  212 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~---------~i~~~sG~~a~~~ai~~~~~-----------~gdiI~~~~~~h~s~~~g~~~  212 (483)
                      ..+..++-++|++++|.++         .++.++|++|+..++.+...           +.-+|++.+..|+|+.+++.+
T Consensus       169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~i  248 (539)
T PLN02590        169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLI  248 (539)
T ss_pred             HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHH
Confidence            4566777788888888653         57789999999887644321           233777899999999999998


Q ss_pred             cCC---eEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeC
Q 011567          213 SRS---TVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       213 s~~---~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DE  282 (483)
                      .|.   .++.++.+       |+++|++.+++....    .....+|+...-..++|.+.||++|.++|++||+||+||.
T Consensus       249 lGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~----g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDa  324 (539)
T PLN02590        249 GGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAK----GFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDA  324 (539)
T ss_pred             cCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhc----CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEec
Confidence            875   35554432       788999888764332    2234555555556678999999999999999999999999


Q ss_pred             ccccccc-cCCCCccccccCCCCCceeEEEccccccccCC--Cce-eeccHH-HHHH-------HHhcC---------Cc
Q 011567          283 SNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE--GGF-CTGSAR-VVDH-------QRLSS---------SG  341 (483)
Q Consensus       283 a~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~--GG~-i~~~~~-~~~~-------~~~~~---------~~  341 (483)
                      +|+++.+ -+..+.+  ..|+  +.+|-++...+|++..+  .|+ ++.++. +.+.       +....         ..
T Consensus       325 A~GG~al~~~~~r~~--~~Gi--e~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d  400 (539)
T PLN02590        325 AYAGNACICPEYRKF--IDGI--ENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKD  400 (539)
T ss_pred             chhhhhhcChhhHHH--hcCC--ccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccc
Confidence            9987653 2222221  2344  45688888999999722  244 444332 2222       21100         00


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL  419 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~  419 (483)
                      +....+ -.+-+.....+++.+-  ...+.+++..+++++|.+.|++.+++++..++..+++++++.++....+......
T Consensus       401 ~~i~ls-Rr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln  479 (539)
T PLN02590        401 WQISLS-RRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERN  479 (539)
T ss_pred             cCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHH
Confidence            111112 1233333444555442  2356788888999999999999889999888888999999865432222234567


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      .++.+++.+.+.+++++.....      ...||+++ +...|++||+.+++.|.+...++-+
T Consensus       480 ~~l~~~l~~~G~~~vs~t~~~g------~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        480 RELLAAVNSTGKIFISHTALSG------KFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             HHHHHHHHhCCCEEEEeeEECC------EEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            7888877776667777654321      12399987 6677899999999999998776543

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.85  E-value=2.5e-19  Score=161.91  Aligned_cols=316  Identities=17%  Similarity=0.214  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHhcCCC-----CCC-CCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCC
Q 011567          128 LLESCTSALEKYGVG-----SCG-PRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEG  201 (483)
Q Consensus       128 i~~a~~~~l~~~g~g-----~~~-~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~  201 (483)
                      +.+++++++-++|-|     .|+ .|.---+.++..++-+.|++|+|++.+-+.++.-++-.+++.+++++||.|++|..
T Consensus        29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~  108 (382)
T COG1103          29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSL  108 (382)
T ss_pred             CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCc
Confidence            456677777776654     332 22222344556667777999999999888888889999999999999999999999


Q ss_pred             chhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567          202 VHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY  274 (483)
Q Consensus       202 ~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~  274 (483)
                      .|++..-+....|.++..+++.       +++...+.+++..++   +....++.++..+-++.|.+.+.++++++|++|
T Consensus       109 aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~---~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~  185 (382)
T COG1103         109 AHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDE---GGDPPALALLTHVDGEYGNLADAKKVAKICREY  185 (382)
T ss_pred             chHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhc---cCCCceEEEEeccCCCcCCchhhHHHHHHHHHc
Confidence            9999999999999999988854       577888888776554   334577888888888889999999999999999


Q ss_pred             CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHH-HhcCCce------eec
Q 011567          275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQ-RLSSSGY------VFS  345 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~-~~~~~~~------~fs  345 (483)
                      |+.+++..+|+.|++.-.++      .   ..+|++++|-+|+++..|  |.+.-+.++.+.. |.++..|      .++
T Consensus       186 gvPlllN~AYt~Grmpvs~k------e---~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellG  256 (382)
T COG1103         186 GVPLLLNCAYTVGRMPVSGK------E---IGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLG  256 (382)
T ss_pred             CCceEeecceeecccccccc------c---cCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeec
Confidence            99999999999988764332      2   234999999999997544  8887788877754 3332322      122


Q ss_pred             CC--CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHH
Q 011567          346 AS--LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       346 ~~--~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      .+  ..|+..  ..+++-...+--..++.--+++++|.+.|.++-|+...+..  ..-++.+.-+           ...+
T Consensus       257 CT~rGapivT--lmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp-----------~f~e  323 (382)
T COG1103         257 CTVRGAPIVT--LMASFPHVVERVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETP-----------VFHE  323 (382)
T ss_pred             ccccCchHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCc-----------hHHH
Confidence            21  223322  22233222221123444456788898999888556544321  1223333221           0112


Q ss_pred             HHHH----------HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          422 IADW----------ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       422 i~~~----------~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +++.          -|+++||.-...   .+     ...+.+++ +.+|.|+++..++++++++.+
T Consensus       324 Iakk~~r~gyFlY~ELK~RgI~GI~~---G~-----Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         324 IAKKHKRKGYFLYEELKKRGIHGIQP---GQ-----TKYFKLSV-YGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             HHHhCcCCceeeHHHHHhcCcccccc---Cc-----eeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            2222          244445432211   10     01266765 568999999999999998865

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.85  E-value=3.8e-19  Score=178.63  Aligned_cols=227  Identities=15%  Similarity=0.184  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||++.|.+.++++++|++|+..++ .+.++||.|++..+.|++..    ..+...|.++..++..|+++++
T Consensus        52 pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~  130 (366)
T PRK08247         52 PTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIE  130 (366)
T ss_pred             chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHH
Confidence            467899999999999999999999999998766 56788998888877776532    3445578889888888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+.+          ++++|++|.+.+++|...++++|.++|++||+++|+||+|+.+....   .      +. ..+|+
T Consensus       131 ~~i~~----------~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~---p------~~-~g~di  190 (366)
T PRK08247        131 QAITP----------NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR---P------LE-EGADI  190 (366)
T ss_pred             Hhccc----------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---c------hh-cCCcE
Confidence            77643          26799999999999999999999999999999999999986544321   1      11 24589


Q ss_pred             EEccccccccC----CCceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.+++    .||+++++ +++.+.++....  ..+..++|+.+..+...++.+.   ..+++.++++..+.+.|
T Consensus       191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l~~~~l~tl~---~r~~~~~~~a~~l~~~L  265 (366)
T PRK08247        191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN--AAGAVLSPFDSWLLIRGMKTLA---LRMRQHEENAKAIAAFL  265 (366)
T ss_pred             EEeecceeccCCCceeeeEEecChHHHHHHHHHHHH--hcCCCCChHHHHHHHhccCcHH---HHHHHHHHHHHHHHHHH
Confidence            99999999974    46888876 566665543211  1123456776666666665443   45667799999999999


Q ss_pred             ccCCCcee-ecCCCCCEEEEEec
Q 011567          385 SDIHGLSI-ASNPESPIVFLILE  406 (483)
Q Consensus       385 ~~~~~~~i-~~~~~~~i~~l~l~  406 (483)
                      ++.+++.. ..++.+.++.+.++
T Consensus       266 ~~~p~v~~v~~P~~gg~~sf~~~  288 (366)
T PRK08247        266 NEQPGVTDVLYPGRGGMLSFRLQ  288 (366)
T ss_pred             HhCCCeeEEecCCcCcEEEEEEC
Confidence            98887763 33446778888774

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.85  E-value=1.5e-18  Score=175.23  Aligned_cols=309  Identities=13%  Similarity=0.155  Sum_probs=205.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      ++-.+++.+.++. |.       .+|..+...++++.+++++|.++++++++|++|+..++.++ .++||.|+++...|.
T Consensus        11 ~~~~~~~~~~l~~-~~-------~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~   82 (375)
T PRK11706         11 GTELDYIQQAMSS-GK-------LCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFV   82 (375)
T ss_pred             HHHHHHHHHHHHc-CC-------ccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcH
Confidence            3446667776665 22       34556788999999999999999999999999998877655 689999999999999


Q ss_pred             HHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++...+...|.+++.++.      .|++++++.+.+          ++++|++.+   ++|...++++|.++|++||+++
T Consensus        83 ~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~----------~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~v  149 (375)
T PRK11706         83 STANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP----------KTRAIVPVH---YAGVACEMDTIMALAKKHNLFV  149 (375)
T ss_pred             HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC----------CCeEEEEeC---CCCCccCHHHHHHHHHHcCCEE
Confidence            999999999999888763      257777776643          245555432   4698899999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccccC--CCceeeccHHHHHHHH---hcCC-----------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALAT--EGGFCTGSARVVDHQR---LSSS-----------  340 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~--~GG~i~~~~~~~~~~~---~~~~-----------  340 (483)
                      |+|++|++|... .|+.... +      .|+-+.|++  |.+++  .|++++.++++.+.++   ..+.           
T Consensus       150 IeD~a~a~g~~~-~~~~~g~-~------~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  221 (375)
T PRK11706        150 VEDAAQGVMSTY-KGRALGT-I------GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVD  221 (375)
T ss_pred             EEECcccccccc-CCeeeec-C------cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCC
Confidence            999999987521 1222111 1      155555665  99953  2345666777776433   2210           


Q ss_pred             c-----eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC--C-ceeec-CC----CCCEEEEEecC
Q 011567          341 G-----YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH--G-LSIAS-NP----ESPIVFLILEK  407 (483)
Q Consensus       341 ~-----~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~--~-~~i~~-~~----~~~i~~l~l~~  407 (483)
                      .     ..++.-++.+.++.+.+.++.++   +..++.+++.+++++.|.+++  + +.+.. ++    ..+++++.+.+
T Consensus       222 ~~~~~~~g~~~~~~~~~aa~~~~ql~~l~---~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T PRK11706        222 KYTWVDIGSSYLPSELQAAYLWAQLEAAD---RINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD  298 (375)
T ss_pred             cceeeecccccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC
Confidence            0     01222356777777777777764   366777788888888887764  2 33211 11    12355555532


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-----cc-----CCCCC-------ceEEEccCCCCHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-----DK-----CRLPV-------GIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-----~~-----~~~~~-------~lRi~~~~~~t~edi~~~~~~  470 (483)
                      ..        ...++.+. |.++||.+.....|..     .+     ...|.       .|.+.++..+|++|++.++++
T Consensus       299 ~~--------~r~~l~~~-L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~  369 (375)
T PRK11706        299 LE--------DRSALINF-LKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDT  369 (375)
T ss_pred             cC--------CHHHHHHH-HHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHH
Confidence            10        12255664 5566998764322211     01     11121       277778888999999999999


Q ss_pred             HHHHH
Q 011567          471 LKRIS  475 (483)
Q Consensus       471 l~~~~  475 (483)
                      |++++
T Consensus       370 i~~~~  374 (375)
T PRK11706        370 ILEFF  374 (375)
T ss_pred             HHHHh
Confidence            98764

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.85  E-value=3.8e-19  Score=181.08  Aligned_cols=321  Identities=15%  Similarity=0.132  Sum_probs=200.8

Q ss_pred             eEEEeecCCC---CCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C---CCCE---EEe
Q 011567          110 EVVNFASANY---LGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G---TPDS---ILY  175 (483)
Q Consensus       110 ~~id~~s~~~---lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g---~e~~---i~~  175 (483)
                      .+|||+.+.+   -+... .+.+.+++.+.++.....      .|+...-..+|++.+++++    +   .++.   +++
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~------~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT  100 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTK------NYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQT  100 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCC------CcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEec
Confidence            4688888732   11212 356777777665432111      1222222345666666654    2   1233   344


Q ss_pred             cccHHHHHhhhhhh--ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCcc
Q 011567          176 SYGLSTMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       176 ~sG~~a~~~ai~~~--~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +++.+|+..+++++  +.+||.|+++++++..+...++..|.+++.++.       -|++++++.+++...       ++
T Consensus       101 ~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~-------~~  173 (396)
T PRK09257        101 PGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA-------GD  173 (396)
T ss_pred             CCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC-------CC
Confidence            55568888888766  479999999999999999999999999988764       156777777654322       25


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC--CCccccccCCCCCceeEEEccccccccCC
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATE  321 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~--G~g~~~~~~v~~~~~Di~~~s~~K~lg~~  321 (483)
                      +++++...+|++|.+.+   +++|+++|++||+++|.||+|+....+..  -..+....+.  .+..|+++||||+++..
T Consensus       174 ~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--~~~vi~i~SfSK~~~~~  251 (396)
T PRK09257        174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA--GLELLVASSFSKNFGLY  251 (396)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc--CCcEEEEEEcCCcCccc
Confidence            67777889999999988   78899999999999999999976433200  0011111111  12358889999999876


Q ss_pred             C---ceee---ccHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhh
Q 011567          322 G---GFCT---GSAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       322 G---G~i~---~~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      |   ||++   .+++    +++.++..... .++. .+++...++.+.++.       .+...+.++.++++.+.+.+.|
T Consensus       252 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L  329 (396)
T PRK09257        252 GERVGALSVVAEDAEEADRVLSQLKATIRT-NYSN-PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEAL  329 (396)
T ss_pred             cccceeEEEEeCCHHHHHHHHHHHHHHhhh-hcCC-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6   9986   3443    33333222111 1221 234444444433321       1112346777888888899888


Q ss_pred             ccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          385 SDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       385 ~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      ++..   ++.+..+.++.++++.+.        +     +.+.+++++.||.+.+            . .||+++. .++
T Consensus       330 ~~~~~~~~~~~~~p~gg~~~w~~l~--------~-----~~~~~l~~~~~V~~~p------------~-~ri~~~~-~~~  382 (396)
T PRK09257        330 KAKGPSRDFDFIARQRGMFSYSGLT--------P-----EQVDRLREEFGVYAVG------------S-GRINVAG-LNE  382 (396)
T ss_pred             HhcCCCCCcccccccceEEEecCCC--------H-----HHHHHHHHcCCEEEcC------------C-CeEEEee-CCH
Confidence            8762   244444445556666551        1     2345566778998854            1 2888854 899


Q ss_pred             HHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRI  474 (483)
Q Consensus       462 edi~~~~~~l~~~  474 (483)
                      ++|+++++.|+++
T Consensus       383 ~~i~~~~~~i~~~  395 (396)
T PRK09257        383 SNIDYVAEAIAAV  395 (396)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>PLN03032 serine decarboxylase; Provisional

Probab=99.85  E-value=1.4e-18  Score=172.82  Aligned_cols=309  Identities=14%  Similarity=0.064  Sum_probs=210.6

Q ss_pred             hHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--C--EEEecccHHHHHhhhhhhc--cCCcEEEE
Q 011567          126 EKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D--SILYSYGLSTMFSAIPCFC--KKGDLIVA  198 (483)
Q Consensus       126 p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~--~i~~~sG~~a~~~ai~~~~--~~gdiI~~  198 (483)
                      +.+.+++.+.+.+ +|..+..+..-..+.+...++.+.+++++|.+  +  .++.++|+++|..++.+..  .++.+|++
T Consensus        37 ~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~  116 (374)
T PLN03032         37 YGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYA  116 (374)
T ss_pred             hHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEe
Confidence            3445555555442 33322221111134578889999999999964  3  3777899999998876543  24568999


Q ss_pred             cCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          199 DEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       199 ~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      +...|.|+.++++..+..+..++.+     |+++|++.+++...       .+.+|++....+++|.+.|+++|.++|++
T Consensus       117 s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~-------~~~lvv~tagtt~tG~idpi~eI~~i~~~  189 (374)
T PLN03032        117 SRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRD-------KPAILNVNIGTTVKGAVDDLDRILRILKE  189 (374)
T ss_pred             CCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCC-------CCEEEEEEecCcCCccCCCHHHHHHHHHH
Confidence            9999999999998887766555433     78999998875321       25677777777889999999999999999


Q ss_pred             cC-----cEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCce----
Q 011567          274 YR-----FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSGY----  342 (483)
Q Consensus       274 ~~-----~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~~----  342 (483)
                      ||     +++++|.+++++.+.-...  ...++.. ..+|.++.|.+|.+| +.| |+++.++...+.+... ..|    
T Consensus       190 ~g~~~~~~~lHvDaA~gg~~~p~~~~--~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~-~~Yl~~~  265 (374)
T PLN03032        190 LGYTEDRFYIHCDGALFGLMMPFVSR--APEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQN-VEYLNSR  265 (374)
T ss_pred             hCCCCCCeeEEEEccchhhhhhccCC--CcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhccC-CcccCCC
Confidence            96     5999999998876532110  1112222 347999999999998 656 7776666665544321 222    


Q ss_pred             --eecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          343 --VFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       343 --~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                        +..++-+...++++..+++.+-.  ..+..++..++++++.+.|++. ++++..++.++++.+.-+.       +   
T Consensus       266 d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~-------~---  334 (374)
T PLN03032        266 DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPM-------D---  334 (374)
T ss_pred             CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCC-------c---
Confidence              33344444555566666766532  2467888899999999999885 8887667777777665421       0   


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                           + .+.+ |..+.+.          +..+|+++...+|++.+|++++-|++
T Consensus       335 -----~-~~~~-~w~l~~~----------~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        335 -----E-AFIK-KWQLACE----------GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             -----H-hHhh-eeeeccc----------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence                 1 1223 5655532          13489999998999999999988875

>PLN02271 serine hydroxymethyltransferase

Probab=99.85  E-value=1.1e-18  Score=176.92  Aligned_cols=336  Identities=16%  Similarity=0.126  Sum_probs=219.9

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHHH----HHHHHhhhCCCC----E-EEecc
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDC----EARIAKFLGTPD----S-ILYSY  177 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~l----~~~La~~~g~e~----~-i~~~s  177 (483)
                      ++.|++..+ ||    ..|.+.++.-..+. +|..|.+|.|.+.|+. ...++    .++..++||.+.    + +-.-|
T Consensus       148 ~~~l~LIASEN~----~S~av~~algS~ltnkYaEG~pG~Ryy~G~~-~iD~iE~la~era~~lF~~~~~~~gaNVQp~S  222 (586)
T PLN02271        148 FKGIELIASENF----VCRAVMEALGSHLTNKYSEGMPGARYYTGNQ-YIDQIERLCCERALAAFGLDSEKWGVNVQPYS  222 (586)
T ss_pred             hcCeeecccccc----CCHHHHHHhcCcccccCCCCCCCCcCCCCCh-hHHHHHHHHHHHHHHHhCCcccccccceeecc
Confidence            356777665 65    55788888776664 5889999998665554 22333    455666788654    2 33469


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHh-H--------hhhcCCe--EEEecCC------CHHHHHHHHHHhhhhhh
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQN-G--------LYLSRST--VVYFKHN------DMDSLRNTLERVTADNK  240 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~-g--------~~~s~~~--v~~~~~~------d~~~Le~~l~~~~~~~~  240 (483)
                      |+.|+.+++.++.++||.|+.-+..|+.... +        +..++..  ++.|+.+      |++++++.....     
T Consensus       223 Gs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~-----  297 (586)
T PLN02271        223 CTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDF-----  297 (586)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhc-----
Confidence            9999999999999999999886555544322 1        1223332  3344443      788888765442     


Q ss_pred             hccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-c
Q 011567          241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-A  319 (483)
Q Consensus       241 ~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g  319 (483)
                          ++++|++.+....  ...|+++++++|+++|++|++|.+|..|.+..   +..   ..+...+|++++|.+|+| |
T Consensus       298 ----rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~---g~~---~sP~~~aDvvt~TTHKtLrG  365 (586)
T PLN02271        298 ----RPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAA---KEC---VNPFDYCDIVTSTTHKSLRG  365 (586)
T ss_pred             ----CCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccccccccc---CcC---CCCCcCCcEEEeCCcccCCC
Confidence                3678888664333  56789999999999999999999999987752   221   111235699999999999 7


Q ss_pred             CCCceeeccHH--------------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Q 011567          320 TEGGFCTGSAR--------------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNT  377 (483)
Q Consensus       320 ~~GG~i~~~~~--------------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~  377 (483)
                      +.||+++.+++                    +.+.+...-.+...++..+. ..++...+++...  +..+..+++.+|+
T Consensus       366 PrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~-~IAalAvalkea~~~efk~Ya~QVv~NA  444 (586)
T PLN02271        366 PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNN-HIAALAIALKQVATPEYKAYMQQVKKNA  444 (586)
T ss_pred             CCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHH-HHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            88998876653                    22223222222122222222 2333334565443  2256888999999


Q ss_pred             HHHHHhhccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          378 AILRTGLSDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       378 ~~l~~~L~~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +.|.+.|.+. |+++.+ ..++.++.+.+....    .+.    +.+.+.|++-||.+.....|.-.....|+||||..+
T Consensus       445 kaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g----~~G----~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~  515 (586)
T PLN02271        445 QALASALLRR-KCRLVTGGTDNHLLLWDLTTLG----LTG----KNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTP  515 (586)
T ss_pred             HHHHHHHHHC-CCeEeeCCCCcceeeecCcccC----CCH----HHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCH
Confidence            9999999885 999764 345667777764321    011    345556777789887654443222224678999654


Q ss_pred             C----CCCHHHHHHHHHHHHHHHH
Q 011567          457 A----AHSEADLVKACESLKRISA  476 (483)
Q Consensus       457 ~----~~t~edi~~~~~~l~~~~~  476 (483)
                      .    .+.++|++++.+.|.++++
T Consensus       516 alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        516 AMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHh
Confidence            3    4568999999999998876

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1e-18  Score=177.05  Aligned_cols=212  Identities=14%  Similarity=0.142  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.++++++++|++|+..++.++.++||.|++..+.|+....    .+...+.++..++..|+++++
T Consensus        60 p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~  139 (405)
T PRK08776         60 PTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLA  139 (405)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence            4568899999999999999999999999999999999999999988887766332    233446777777777888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|+++.+.|++|.+.++++|+++|++||+++|+||+|..+..-   +.+ +      ..+|+
T Consensus       140 ~~i~~----------~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~---~pl-~------~gaDi  199 (405)
T PRK08776        140 DALAQ----------SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQ---KPL-E------FGADL  199 (405)
T ss_pred             HhcCc----------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccC---Ccc-c------ccCCE
Confidence            76642          2678899999999999999999999999999999999999754211   111 1      23489


Q ss_pred             EEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|.+|.+++.    ||++++ ++++.+.++.....  .+..++|+.+..+...++.++   .+.++..+|...+.+.|
T Consensus       200 vv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~--~g~~~s~~~a~l~~~gl~tl~---~r~~~~~~na~~la~~L  274 (405)
T PRK08776        200 VLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANA--LGLTGSPFDAFLTLRGLRTLD---ARLRVHQENADAIAALL  274 (405)
T ss_pred             EEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhCcHH---HHHHHHHHHHHHHHHHH
Confidence            999999999743    466654 56776665432211  122457888888877776663   47888899999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+.+
T Consensus       275 ~~~p~v  280 (405)
T PRK08776        275 DGHAAV  280 (405)
T ss_pred             HcCCCe
Confidence            877643

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.84  E-value=5e-18  Score=160.62  Aligned_cols=334  Identities=18%  Similarity=0.193  Sum_probs=229.3

Q ss_pred             eeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEecc
Q 011567          109 KEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSY  177 (483)
Q Consensus       109 ~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~s  177 (483)
                      |++|-+..++   |-.+...++..+|+.++++..-.+      .|+...-+...++++|+++.        .++++++++
T Consensus        61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N------~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsG  134 (447)
T KOG0259|consen   61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGN------GYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSG  134 (447)
T ss_pred             ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCC------CcCCccccHHHHHHHHHHhhcCCCCccCcCceEEecc
Confidence            5788888873   344556789999999999862221      23334445677888888853        357788889


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +++|++.++.+++++|.-|+++++.+.-+..-...++..+++|+.   +    |++.+|.++.+          ++++++
T Consensus       135 C~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DE----------NT~Aiv  204 (447)
T KOG0259|consen  135 CSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADE----------NTVAIV  204 (447)
T ss_pred             chHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhcc----------CeeEEE
Confidence            999999999999999999999999887666666677888888753   2    67778777755          355666


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc---cccCCCCCceeEEEccccccccCCC--
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT---EHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~---~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      +....++.|.+..   |++|+++|+|+|+.+|.||+|...++|.  ..+.   +.-.+-|   .|.+|+++|.+=.+|  
T Consensus       205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~--~pfvpmg~fssiVP---VitlggisKrW~VPGWR  279 (447)
T KOG0259|consen  205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD--KPFVPMGKFSSIVP---VITLGGISKRWIVPGWR  279 (447)
T ss_pred             EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC--CCccchhhccccCc---eEeecccccccccCCce
Confidence            6666677788766   9999999999999999999999888875  3222   2222333   688899999997666  


Q ss_pred             -ceeec--------cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHhhccCC
Q 011567          323 -GFCTG--------SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-----PDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       323 -G~i~~--------~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-----~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                       ||++-        +..+++.+.....    -...|+....+|+-.  ++++.     .....-++.+.+.-.+.|+++|
T Consensus       280 lGWi~~hD~~gvf~~~~~~q~~~~~~~----~~~~p~TiiQ~AlP~--IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP  353 (447)
T KOG0259|consen  280 LGWIALHDPRGVFRDTKVVQGIKNFLD----IIPGPATIIQGALPD--ILEKTPEEFFDKKLSFLKSNADLCYSRLKDIP  353 (447)
T ss_pred             eeeEEEecccccccchHHHHHHHHHHh----ccCCccHhHHHHhHH--HHHhChHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence             88643        2233333332211    112344444444432  23322     2467778899999999999999


Q ss_pred             CceeecCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567          389 GLSIASNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       389 ~~~i~~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      ++.....+.+. ...+.+.-..-   .+-+.-.+++.++.++..+++.|+.....     ++.+|+++.  ...+.++++
T Consensus       354 ~l~cp~kPeg~mylmv~l~~s~~---~~~~dD~dFc~kL~~Eesv~~LPG~af~~-----~nw~Ri~i~--~~~~~leea  423 (447)
T KOG0259|consen  354 CLTCPVKPEGCMYLMVKLNLSLF---PDIEDDVDFCQKLAREESVICLPGQAFGL-----KNWLRIVIT--VEEEMLEEA  423 (447)
T ss_pred             CcccCcCCCcceEEEeccchhhh---ccccccHHHHHHHhhhcceEEeccccccC-----CCeEEEEEc--cChHHHHHH
Confidence            98854444444 44444422100   01111236777777778899988765543     455999886  577999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          468 CESLKRISAVVL  479 (483)
Q Consensus       468 ~~~l~~~~~~~~  479 (483)
                      +++|+++..+..
T Consensus       424 ~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  424 FSRIKEFCDRHS  435 (447)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=5.6e-19  Score=178.62  Aligned_cols=291  Identities=12%  Similarity=0.086  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++++++.|.+.+++++||++|+..++.+++++||.|+++.+.|..+..    .+...|.++..++..+.++++
T Consensus        65 pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~  144 (394)
T PRK07050         65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIA  144 (394)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHH
Confidence            4468999999999999999999999999999999999999999999988877553    345568888888766666777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.+++|.+.++++|+++|+++|+++|+|++|+.+..-   +++    .   ..+|+
T Consensus       145 ~~i~~----------~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~---~~l----~---~GaDi  204 (394)
T PRK07050        145 DLIQP----------NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF---KPF----E---HGVDI  204 (394)
T ss_pred             HhcCC----------CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc---CHH----H---cCCeE
Confidence            66532          3789999999999999999999999999999999999999876432   111    1   13489


Q ss_pred             EEccccccccC----CCce-eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGF-CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~-i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|.++.    .||. +++++++.+.++....  ..+.+++|..+..++..++   ......++..+++..+.+.|
T Consensus       205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~--~~G~~~~~~~a~l~lr~l~---tl~~Rl~~~~~~a~~la~~L  279 (394)
T PRK07050        205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARM--RLGIGVSADDCSLVLRGLP---SLQVRLAAHDRSALEVAEWL  279 (394)
T ss_pred             EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHH
Confidence            99999999963    2554 4557777776653321  1244566766654444333   33346677777888888888


Q ss_pred             ccCCCceeec-----------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-----
Q 011567          385 SDIHGLSIAS-----------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-----  442 (483)
Q Consensus       385 ~~~~~~~i~~-----------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-----  442 (483)
                      ++.+++..+.                 ...+.++.+.++...     ......++.+. |+..++.++-+...++     
T Consensus       280 ~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~-----~~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~~~  353 (394)
T PRK07050        280 KARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY-----SPAQVDAFVEA-LELFAIGWSWGGACSLAMPYD  353 (394)
T ss_pred             HhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC-----CHHHHHHHHHc-CCCCeeccccCCccceEeeCc
Confidence            8765432111                 112446777774321     12234455553 4433333322221111     


Q ss_pred             ------ccCCCC-CceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          443 ------DKCRLP-VGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       443 ------~~~~~~-~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                            .....+ .-||+++..    ||.|.+++-|++++..++
T Consensus       354 ~~~~~~~~~~~~~~~iR~svGl----E~~~dl~~dl~~al~~~~  393 (394)
T PRK07050        354 VASMRTAKWPHRGTLVRLYIGL----EDEADLIADLEQALEAAL  393 (394)
T ss_pred             ccccchhhcCCCCCEEEEEeCc----CCHHHHHHHHHHHHHHhh
Confidence                  001111 239999976    556666666666665543

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=4.3e-19  Score=180.82  Aligned_cols=214  Identities=18%  Similarity=0.233  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.+.++++++|++|+..++.++.++||.|+++...|+.....+    ...+.++..++.+|+++++
T Consensus        58 pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le  137 (425)
T PRK06084         58 PTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALE  137 (425)
T ss_pred             chHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHH
Confidence            456799999999999999999999999999999999999998888877665444333    2345677778888999998


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|++|++.+++|.+.|+++|.++|++||+++|+|++++.+....   .    ..   ..+|+
T Consensus       138 ~ai~~----------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~---p----~~---~gaDi  197 (425)
T PRK06084        138 ALIDE----------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCR---P----FE---HGADI  197 (425)
T ss_pred             HHhcc----------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC---h----hh---cCCCE
Confidence            88754          26788999999999999999999999999999999999998654321   1    11   23489


Q ss_pred             EEccccccccCC----CceeeccHHH--HHH------HHh-------------c-----------CCceeecCCCcHHHH
Q 011567          310 VTAAMGHALATE----GGFCTGSARV--VDH------QRL-------------S-----------SSGYVFSASLPPYLA  353 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~--~~~------~~~-------------~-----------~~~~~fs~~~~p~~~  353 (483)
                      ++.|++|.+++.    ||+++.+...  .+.      ++.             .           ...-.+++.++|+.|
T Consensus       198 vv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a  277 (425)
T PRK06084        198 VVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNA  277 (425)
T ss_pred             EEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            999999999743    5766653321  000      000             0           000123456788888


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      ..++..++.+   +.+.++..+++..+.+.|++.+++
T Consensus       278 ~l~lrgl~tl---~~R~~~~~~na~~la~~L~~~p~v  311 (425)
T PRK06084        278 FLILQGLETL---ALRMERHTENALKVARYLQQHPQV  311 (425)
T ss_pred             HHHHcCcCcH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            8777776655   457888889999999999887754

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.84  E-value=7e-19  Score=177.20  Aligned_cols=285  Identities=16%  Similarity=0.150  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||+++++++|.+.++++++|++|+..++. +.++||.|++....|.++...    +...|.++..++..|+++++
T Consensus        47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le  125 (378)
T TIGR01329        47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVK  125 (378)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHH
Confidence            4578999999999999999999999998887665 779999999988888765442    34568889888888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.+++|.+.|+++|+++|++||+++|+|++++.+...   +.    .+   ..+|+
T Consensus       126 ~~i~~----------~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~---~~----l~---~g~Di  185 (378)
T TIGR01329       126 AALGP----------KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLC---NP----LE---LGADI  185 (378)
T ss_pred             HhcCc----------CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC---Ch----hh---cCCcE
Confidence            77742          3789999999999999999999999999999999999998654321   11    11   13489


Q ss_pred             EEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|++++.    ||+++. ++++.+.++....  ..+..++|..+..+...++   ..+.++++..+++..+.+.|
T Consensus       186 ~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--~~G~~~~~~~a~l~~~~l~---tl~~R~e~~~~na~~la~~L  260 (378)
T TIGR01329       186 VYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--STGSGLAPFDCWLLLRGIK---TLAIRIEKQQENARAIAMFL  260 (378)
T ss_pred             EEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH--hcCCcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHHHHH
Confidence            999999999642    677765 5555454442211  1234456776655444443   33457788888888888888


Q ss_pred             ccCCCce--------------eec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-----
Q 011567          385 SDIHGLS--------------IAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-----  442 (483)
Q Consensus       385 ~~~~~~~--------------i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-----  442 (483)
                      ++.+.+.              +..   ...++++.|.+.+        .....++++. |+..++.++.+...++     
T Consensus       261 ~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~--------~~~~~~~~~~-L~~~~i~~s~G~~~sl~~~p~  331 (378)
T TIGR01329       261 STHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS--------VALSKRLVEA-TKLFSITVSFGSVNSLISMPC  331 (378)
T ss_pred             HhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC--------HHHHHHHHHh-CcCcccccCCCCCCceeeCCC
Confidence            7654321              111   1245688888721        2224466664 4544555544333221     


Q ss_pred             --ccC----------CCCC-ceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          443 --DKC----------RLPV-GIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       443 --~~~----------~~~~-~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                        .+.          ..++ -||+++..    ||.+.+++-|++++.+
T Consensus       332 ~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  375 (378)
T TIGR01329       332 FMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVT  375 (378)
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence              011          1122 39999976    5566666666666653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.84  E-value=3.1e-18  Score=172.25  Aligned_cols=309  Identities=16%  Similarity=0.188  Sum_probs=203.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      ++..+++.+.+.. |.       .+|..+...++++.+++++|.+.++++++|++|+..++.++ .++||.|+++...|.
T Consensus        11 ~~e~~a~~~~~~~-~~-------~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~   82 (376)
T TIGR02379        11 GQELEYIAEAISE-GK-------LSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFV   82 (376)
T ss_pred             HHHHHHHHHHHHc-CC-------ccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence            4557778877765 22       33445678999999999999999999999999999888887 789999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++...+...|.+++.++.+      |++++++.++.          ++++|+..   +.+|...++++|.++|++||+++
T Consensus        83 ~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~----------~tk~Iip~---~~~G~~~d~~~I~~la~~~~i~v  149 (376)
T TIGR02379        83 STANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH----------RTKAIVPV---HYAGVACDMDTIMALANKHQLFV  149 (376)
T ss_pred             HHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc----------CceEEEEe---CCCCCccCHHHHHHHHHHCCCEE
Confidence            9988888889998887643      55666665532          25666533   34699999999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc--CCCceeec-cHHHHHHHHh---cCC----------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA--TEGGFCTG-SARVVDHQRL---SSS----------  340 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg--~~GG~i~~-~~~~~~~~~~---~~~----------  340 (483)
                      |+|++|++|.. -.|+..    |.-   .|+.+.||+  |.+.  +.||+++. ++++.+.++.   .+.          
T Consensus       150 IeDaa~~~g~~-~~~~~~----g~~---~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  221 (376)
T TIGR02379       150 IEDAAQGVMST-YKGRAL----GSI---GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEV  221 (376)
T ss_pred             EEECccccCCc-cCCccc----CCC---CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCC
Confidence            99999998752 112211    111   155555653  6564  36787655 4777766542   111          


Q ss_pred             -ce-----eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC--C-ceee--cCCCC---CEEEEEec
Q 011567          341 -GY-----VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH--G-LSIA--SNPES---PIVFLILE  406 (483)
Q Consensus       341 -~~-----~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~--~-~~i~--~~~~~---~i~~l~l~  406 (483)
                       .+     .+..-++.+.++.+++.|+.+++   ..++-+++.++..+.|..++  + ..+.  .+...   .++.+.+.
T Consensus       222 ~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~---~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  298 (376)
T TIGR02379       222 DKYTWRDIGSSYLPSELQAAYLWAQLEQADR---INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLK  298 (376)
T ss_pred             CcceeeeecccCCccHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEEC
Confidence             01     12223567777777777877754   56666677777777776643  1 2221  11111   23445553


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc--c---c-----CCCC-------CceEEEccCCCCHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML--D---K-----CRLP-------VGIRLFVSAAHSEADLVKACE  469 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~--~---~-----~~~~-------~~lRi~~~~~~t~edi~~~~~  469 (483)
                      ...        ...++.+. |+++||.++....|..  +   .     ...|       ..|.+.++..+|++|++++++
T Consensus       299 ~~~--------~r~~l~~~-L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~  369 (376)
T TIGR02379       299 DED--------DRNELIKY-LKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQ  369 (376)
T ss_pred             CcC--------CHHHHHHH-HHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHH
Confidence            210        12255654 5667998764322111  0   0     0111       138888888999999999999


Q ss_pred             HHHHHH
Q 011567          470 SLKRIS  475 (483)
Q Consensus       470 ~l~~~~  475 (483)
                      +|++++
T Consensus       370 ~i~~~~  375 (376)
T TIGR02379       370 TICDYL  375 (376)
T ss_pred             HHHHHh
Confidence            998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07049 methionine gamma-lyase; Validated

Probab=99.84  E-value=9.4e-19  Score=178.58  Aligned_cols=217  Identities=16%  Similarity=0.175  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEec-CCCHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFK-HNDMDSL  228 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~-~~d~~~L  228 (483)
                      +....|++.||++.|.++++++++|.+|+..++.+++++||.|+++.+.++.+...+    ...|.+++.+. ..|.+++
T Consensus        83 Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l  162 (427)
T PRK07049         83 PNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAI  162 (427)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHH
Confidence            446799999999999999999999999999999999999999999998887765443    44577755554 4577888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH------cCcEEEEeCccccccccCCCCccccccCC
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK------YRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k------~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                      ++.+++....     .++++|++|.++|++|.+.++++|.+++++      +++++|+||++..... .  +.      +
T Consensus       163 ~~~l~~~~~~-----~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~-~--~p------l  228 (427)
T PRK07049        163 GAAAEAAAAK-----GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF-Q--KP------L  228 (427)
T ss_pred             HHHHHhhccC-----CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc-C--Cc------c
Confidence            8777543211     137899999999999999999999999988      8999999999753221 1  11      1


Q ss_pred             CCCceeEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA  378 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~  378 (483)
                      . ...|+++.|++|.+|+    .+||+++++++++.++...  ..++..++|..+.++...++.+   ...+++..++++
T Consensus       229 ~-~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~--~~~g~~ls~~~a~l~~r~L~tl---~~R~~~~~~~a~  302 (427)
T PRK07049        229 E-HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALR--SAIGTQLDPHSCWMLGRSLETL---VLRMERANRNAR  302 (427)
T ss_pred             c-cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHH--HhcCCCCCHHHHHHHHcCCChH---HHHHHHHHHHHH
Confidence            1 2348999999999984    3589999999888776432  2345567888888887777654   335677788999


Q ss_pred             HHHHhhccCCCc
Q 011567          379 ILRTGLSDIHGL  390 (483)
Q Consensus       379 ~l~~~L~~~~~~  390 (483)
                      .+.+.|++.+++
T Consensus       303 ~la~~L~~~p~V  314 (427)
T PRK07049        303 AVAEFLRDHPKV  314 (427)
T ss_pred             HHHHHHHhCCCc
Confidence            999999887654

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=1.4e-18  Score=174.57  Aligned_cols=212  Identities=17%  Similarity=0.191  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++.+.+++++++||++|+..++.++.++||.|++..+.|+++..    .+...|.++..++..|.+.++
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~  140 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIR  140 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHH
Confidence            4567999999999998899999999999999999999999998888777766553    233456777777767777777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|++|.+.|++|.+.|+++|+++|++||+++++|++|+.+..-   +.    +.   ..+|+
T Consensus       141 ~~l~~----------~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~---~P----l~---~GaDi  200 (394)
T PRK09028        141 ELIRP----------NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS---RP----FE---MGVDI  200 (394)
T ss_pred             HhcCc----------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC---Cc----cc---cCceE
Confidence            66532          3789999999999999999999999999999999999999865321   10    11   34599


Q ss_pred             EEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|.+|++++.    ||+++++++..+.++..  ....+..++|..|...+..|+-+   +-++++..+++..+.+.|+
T Consensus       201 vv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~--~~~~G~~~~p~~a~l~~rgl~TL---~lR~~~~~~na~~la~~L~  275 (394)
T PRK09028        201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREH--SYLMGQCTSPDDVYLAMRGLRTL---GVRLAQHEKNALKVANWLA  275 (394)
T ss_pred             EEEeCCeEecCCCCEEEEEEECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHcccCcH---HHHHHHHHHHHHHHHHHHh
Confidence            999999999754    57777777766555432  11234567888888777666655   3477888889999999998


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+.+
T Consensus       276 ~~p~v  280 (394)
T PRK09028        276 TRPEV  280 (394)
T ss_pred             cCCCc
Confidence            87644

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=9.5e-19  Score=178.69  Aligned_cols=214  Identities=16%  Similarity=0.207  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++||++.|.+.+++++||++|+..++.++.++||.|++....|.+...    .+...|.+++.++.+|+++++
T Consensus        63 p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~  142 (427)
T PRK05994         63 PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFE  142 (427)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence            4568899999999999999999999999999999999999999988887775443    345568888888888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|++|.+.+++|.+.|+++|+++|++||+++|+|++++.+....       .+.   ..+|+
T Consensus       143 ~ai~~----------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~-------pl~---~gaDi  202 (427)
T PRK05994        143 RAITP----------RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIR-------PIE---HGADI  202 (427)
T ss_pred             HhcCc----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCC-------ccc---cCCcE
Confidence            77643          37899999999999999999999999999999999999997553221       111   34599


Q ss_pred             EEccccccccCC----CceeeccHH-----------------------HHHHHH-------h-cCCceeecCCCcHHHHH
Q 011567          310 VTAAMGHALATE----GGFCTGSAR-----------------------VVDHQR-------L-SSSGYVFSASLPPYLAS  354 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~-----------------------~~~~~~-------~-~~~~~~fs~~~~p~~~a  354 (483)
                      ++.|++|.+|+.    ||+++....                       +.+.+.       . .......+..++|+.|+
T Consensus       203 vv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~  282 (427)
T PRK05994        203 VVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAF  282 (427)
T ss_pred             EEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHH
Confidence            999999999853    455553211                       111100       0 00001234457898888


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       355 aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      .++..|+.+   +.+.++..+++..+.+.|++.|++
T Consensus       283 l~~~~l~tL---~~r~~~~~~~a~~la~~L~~~p~v  315 (427)
T PRK05994        283 LILTGIETL---PLRMQRHSDNALAVAEWLKGHPKV  315 (427)
T ss_pred             HHHcCcccH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            887777666   347788888999999999887654

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=1.4e-18  Score=176.89  Aligned_cols=214  Identities=17%  Similarity=0.168  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEec-CCCHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFK-HNDMDS  227 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~-~~d~~~  227 (483)
                      .+.+.+||++||++.|.+.+++++||++|+..++.++.++||.|+++...|.++...    +...|.+++.++ ..|+++
T Consensus        68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~  147 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDA  147 (436)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHH
Confidence            356789999999999999999999999999999999999999998888777765543    233456666664 335555


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +++.++   +       ++++|++|.+++++|.+.|+++|.++|++||+++|+|++++.+.+.   +.      + ...+
T Consensus       148 l~~ai~---~-------~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~---~p------l-~~Ga  207 (436)
T PRK07812        148 WRAAVR---P-------NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLI---RP------L-EHGA  207 (436)
T ss_pred             HHHhCC---C-------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC---Cc------h-hcCC
Confidence            554442   2       3789999999999999999999999999999999999998765432   11      1 1245


Q ss_pred             eEEEccccccccCCC----ceeeccHHH------------------------------HHHHHhcCCceeecCCCcHHHH
Q 011567          308 DIVTAAMGHALATEG----GFCTGSARV------------------------------VDHQRLSSSGYVFSASLPPYLA  353 (483)
Q Consensus       308 Di~~~s~~K~lg~~G----G~i~~~~~~------------------------------~~~~~~~~~~~~fs~~~~p~~~  353 (483)
                      |+++.|++|.+|+.|    |.++.+...                              +...+... ....++.++|..|
T Consensus       208 Divv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~l~p~~a  286 (436)
T PRK07812        208 DIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQL-LRDLGSAISPFNA  286 (436)
T ss_pred             CEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHH-HHhcCCCCCHHHH
Confidence            999999999998665    444432210                              00111000 0022346778877


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      ...+..++.+   +.+.++..+++..+.+.|++.|++
T Consensus       287 ~l~~rgl~tL---~~R~~~~~~nA~~la~~L~~~p~v  320 (436)
T PRK07812        287 FLIAQGLETL---SLRIERHVANAQRVAEFLEARDEV  320 (436)
T ss_pred             HHHhcCcCcH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            7666665544   457888889999999999887654

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=2e-18  Score=173.59  Aligned_cols=212  Identities=14%  Similarity=0.114  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....|+++||++.|.+.++++++|++|+..++.++.++||.|++..+.|++....+    ...+.++..++..|+++++
T Consensus        53 pt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~  132 (388)
T PRK08861         53 PNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALD  132 (388)
T ss_pred             chHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Confidence            457899999999999999999999999999999999999999999888887654322    2335677777777888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..          ++++|+++.+.+++|.+.|+++|.++|+++|+++|+||+|..+.+.   +.    ..   ..+|+
T Consensus       133 ~~i~~----------~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~---~p----l~---~GaDi  192 (388)
T PRK08861        133 AALAK----------KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ---KP----LE---LGADF  192 (388)
T ss_pred             HhcCc----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC---CC----cc---cCCCE
Confidence            76643          3689999999999999999999999999999999999999866432   11    11   23599


Q ss_pred             EEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.+++.    ||++++ ++++.+.++...  ...+..++|+.+...+..|+-+   .-++++..+++..+.+.|
T Consensus       193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~--~~~G~~~~p~~a~l~~rgl~Tl---~lR~~~~~~~a~~~a~~L  267 (388)
T PRK08861        193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG--NCIGATGTPFDSYMTLRGIRTL---GARMRVHEESAQQILAYL  267 (388)
T ss_pred             EEeecceeccCCCcceeEEEEecHHHHHHHHHHHH--hccCCCCChHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHH
Confidence            999999999742    688766 455655554221  2335567888877666666544   346788888888899999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.|.+
T Consensus       268 ~~~p~v  273 (388)
T PRK08861        268 QTQSLV  273 (388)
T ss_pred             HhCCCe
Confidence            877643

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.83  E-value=8.8e-18  Score=174.12  Aligned_cols=350  Identities=14%  Similarity=0.132  Sum_probs=212.4

Q ss_pred             EEeecCCCCCCCCC--hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---------------CCEEE
Q 011567          112 VNFASANYLGLIGH--EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---------------PDSIL  174 (483)
Q Consensus       112 id~~s~~~lG~~~~--p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---------------e~~i~  174 (483)
                      ++..+..|+||...  |.+.-++.+.+..++.+............+..++-++++++++.               ...++
T Consensus        85 ~~~~hP~f~g~~~~~~p~~~~~l~~l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~  164 (522)
T TIGR03799        85 VHTASPSFIGHMTSALPYFMLPLSKLMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAF  164 (522)
T ss_pred             CCCCCCCeEEeccCCCchHHHHHHHHHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEE
Confidence            44445577777654  55433333322222222111111112234555566666666531               12577


Q ss_pred             ecccHHHHHhhhhhhcc--------------------------CCcEEEEcCCchhHHHhHhhhcCC---eEEEecCC--
Q 011567          175 YSYGLSTMFSAIPCFCK--------------------------KGDLIVADEGVHWGIQNGLYLSRS---TVVYFKHN--  223 (483)
Q Consensus       175 ~~sG~~a~~~ai~~~~~--------------------------~gdiI~~~~~~h~s~~~g~~~s~~---~v~~~~~~--  223 (483)
                      .++|++||..|+.+...                          ++..|++.+..|.|+.+++...|.   +++.++.+  
T Consensus       165 tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~  244 (522)
T TIGR03799       165 CSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDAN  244 (522)
T ss_pred             cCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCC
Confidence            79999999887533110                          245799999999999999887776   56665543  


Q ss_pred             ---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccccc-CCCCccccc
Q 011567          224 ---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLG-RSGRGLTEH  299 (483)
Q Consensus       224 ---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg-~~G~g~~~~  299 (483)
                         |+++|++.+++....    .....+|+.....+.+|.+.|+++|.++|++||+++++|.+++++.+- ...+..  .
T Consensus       245 g~~d~~~L~~~i~~~~~~----g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l  318 (522)
T TIGR03799       245 NRIDVDALRDKCAELAEQ----NIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--L  318 (522)
T ss_pred             CcCCHHHHHHHHHHHHHC----CCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--h
Confidence               789999988764332    111233333344557899999999999999999999999999865431 111111  1


Q ss_pred             cCCCCCceeEEEcccccccc-CCC-cee-eccHHHHHHHHhc--------C---CceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          300 CGVPVDKIDIVTAAMGHALA-TEG-GFC-TGSARVVDHQRLS--------S---SGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg-~~G-G~i-~~~~~~~~~~~~~--------~---~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      -++  ..+|.++.+.+|+++ +.| |++ +.++...+.+...        +   ..+.+.++-+..+ .....+++.+..
T Consensus       319 ~gl--e~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~  395 (522)
T TIGR03799       319 KGI--ERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGR  395 (522)
T ss_pred             cCc--hhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhH
Confidence            222  356999999999774 444 554 4455555544321        0   1134444434332 345567777643


Q ss_pred             --CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC--------------chhhHHHHHHHHHHHHHh
Q 011567          366 --NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS--------------MKNDLQLLEDIADWALKE  429 (483)
Q Consensus       366 --~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~--------------~~~~~~~~~~i~~~~l~~  429 (483)
                        ..+++++..+++++|.+.|++.+++++..++..+++++++.+....              ........+.+.+++.++
T Consensus       396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~  475 (522)
T TIGR03799       396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA  475 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc
Confidence              3578889999999999999998999999888888999987543210              011234456777766666


Q ss_pred             CCEEEEeecccc-cccCCCCCceEEEc-cCCCCHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSM-LDKCRLPVGIRLFV-SAAHSEADLVKACES  470 (483)
Q Consensus       430 ~Gv~v~~~~~~~-~~~~~~~~~lRi~~-~~~~t~edi~~~~~~  470 (483)
                      +.+++++..... .-+......+|+++ +...|++||+.+++-
T Consensus       476 G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       476 GKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             CCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence            566676543211 00010012389977 667789998886653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.2e-17  Score=163.65  Aligned_cols=294  Identities=20%  Similarity=0.248  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHhhhCCC--CEEEe-cccHHHHHhhhhhhccCCcEEE-EcCCchhH-HHhHhhhcCCeEEEecCC-----
Q 011567          154 DVHLDCEARIAKFLGTP--DSILY-SYGLSTMFSAIPCFCKKGDLIV-ADEGVHWG-IQNGLYLSRSTVVYFKHN-----  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~~ai~~~~~~gdiI~-~~~~~h~s-~~~g~~~s~~~v~~~~~~-----  223 (483)
                      +...++.+.|...++++  ++++. +||+.++++++..+.+|||.|+ +..+.++. ..+-++..|.++..+...     
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v  117 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAV  117 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            46788889999999977  55555 8999999999999999998655 45555544 345566777777665433     


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      |++++++.|++..+        .++|.+.+.-+.||.+.|+++|.++|++||.++|+|.+-|+|...         +.++
T Consensus       118 ~p~~v~~~L~~~~~--------~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~---------~~vd  180 (383)
T COG0075         118 DPEEVEEALDKDPD--------IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP---------LKVD  180 (383)
T ss_pred             CHHHHHHHHhcCCC--------ccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcc---------cchh
Confidence            89999999985432        556666666677899999999999999999999999999876322         3444


Q ss_pred             CCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCc-e---------------eecCCCcHHHHHHHHHHHHHHhc
Q 011567          304 VDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSG-Y---------------VFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~-~---------------~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      .-.+|+++++--|+|+ ++| |++..+++..+.+.....+ |               .|..+.|.....+..++|+.+.+
T Consensus       181 ~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~  260 (383)
T COG0075         181 EWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILE  260 (383)
T ss_pred             hcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4467999999999997 455 7787777776665433222 1               12223455566677789998876


Q ss_pred             C--cHHHHHHHHHHHHHHHhhccCCCceeecC--CCCCEE-EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567          366 N--PDLITKLKKNTAILRTGLSDIHGLSIASN--PESPIV-FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS  440 (483)
Q Consensus       366 ~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~i~-~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~  440 (483)
                      +  +..+++.+++.+.+++++.++ |+++..+  ..+|.+ .+.++...  .  +.    ++...+++++|+.+..+..+
T Consensus       261 EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~--~--~~----~~~~~~~~~~g~~i~gg~~~  331 (383)
T COG0075         261 EGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGV--D--DK----KVRRALLKEYGVEIAGGQGP  331 (383)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCC--C--cH----HHHHHHHHhCCEEecccccc
Confidence            5  678999999999999999987 9887762  235444 44443211  1  11    22335677789999876544


Q ss_pred             ccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          441 MLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       441 ~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..+     .-+||......+.+|+..++.+|..+++++
T Consensus       332 l~g-----kifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         332 LKG-----KIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             cCc-----cEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            321     239998777899999999999999999875

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.83  E-value=1.9e-18  Score=174.05  Aligned_cols=212  Identities=13%  Similarity=0.125  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|++.||++.|.+.++++++|++|+..++.++.++||.|++..+.|++...-+    ...+.++..++..|+++++
T Consensus        51 p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~  130 (382)
T TIGR02080        51 PTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALR  130 (382)
T ss_pred             chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHH
Confidence            467899999999999889999999999999999999999999999888887644322    2234566666556777777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|+++.+.+++|.+.|+++|.++|+++|+++++||+|..+...   ..    ..   ..+|+
T Consensus       131 ~ai~~----------~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~---~p----l~---~gaDi  190 (382)
T TIGR02080       131 AALAQ----------KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ---NP----LA---LGADL  190 (382)
T ss_pred             HhcCc----------CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC---Cc----hh---hCCCE
Confidence            76643          2688999999999999999999999999999999999999765322   11    11   13489


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.+++    .+|+++. ++++.+.++...  ...+..++|+.+..++..++.+.   ..+++..+++..+.+.|
T Consensus       191 vv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~--~~~g~~~sp~~a~l~lr~l~tl~---~R~~~~~~na~~~a~~L  265 (382)
T TIGR02080       191 VLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA--NNLGVTGGAFDSYLTLRGLRTLV---ARMRLQQRNAQAIVEYL  265 (382)
T ss_pred             EEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH--HccCCCCCHHHHHHHHcccchHH---HHHHHHHHHHHHHHHHH
Confidence            99999999963    3577654 667766654332  12244578888887777666553   35777788888888988


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+.+
T Consensus       266 ~~~p~v  271 (382)
T TIGR02080       266 QTQPLV  271 (382)
T ss_pred             HhCCCe
Confidence            876644

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.83  E-value=2.3e-18  Score=178.15  Aligned_cols=292  Identities=18%  Similarity=0.214  Sum_probs=183.8

Q ss_pred             cccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc-cCCcEEEEcCCchhHHHhHhhh----cCCeEEEec
Q 011567          149 FYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC-KKGDLIVADEGVHWGIQNGLYL----SRSTVVYFK  221 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~-~~gdiI~~~~~~h~s~~~g~~~----s~~~v~~~~  221 (483)
                      ..|..+...++.+.+++++|.+  +.+++++|++++.+++.++. +++|.|++.+..|.++...+..    .|.+++.++
T Consensus       107 ~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~  186 (447)
T PRK00451        107 SQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVP  186 (447)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEec
Confidence            4444556677778899999975  34566777888877777764 6889999999999888776654    578888887


Q ss_pred             CC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE--eCccccccccCCCCc
Q 011567          222 HN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL--DESNSFGVLGRSGRG  295 (483)
Q Consensus       222 ~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~--DEa~s~g~lg~~G~g  295 (483)
                      .+    |+++|++.+.+          ++++|++... +++|.+.|+++|.++|+++|+++++  |.+ +.|.+..    
T Consensus       187 ~~~~~~d~~~l~~~i~~----------~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~----  250 (447)
T PRK00451        187 YEDGVTDLEALEAAVDD----------DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKP----  250 (447)
T ss_pred             CCCCCCCHHHHHHhcCC----------CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCC----
Confidence            65    56666665532          2667777766 7789999999999999999999998  533 3333221    


Q ss_pred             cccccCCCCCceeEEEcc---ccccc--c-CCCceeeccHHHHHHHHhc----------CCcee----------------
Q 011567          296 LTEHCGVPVDKIDIVTAA---MGHAL--A-TEGGFCTGSARVVDHQRLS----------SSGYV----------------  343 (483)
Q Consensus       296 ~~~~~~v~~~~~Di~~~s---~~K~l--g-~~GG~i~~~~~~~~~~~~~----------~~~~~----------------  343 (483)
                          .+  ..++|++++|   ++|.+  + +..||++.++++++.+...          ..+|.                
T Consensus       251 ----~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (447)
T PRK00451        251 ----PG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKAT  324 (447)
T ss_pred             ----cc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccc
Confidence                11  1345888874   44443  3 3348888888887764110          00010                


Q ss_pred             ecC-CCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          344 FSA-SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       344 fs~-~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      ... +..++.+.++..+++.+.+  .++..+++.++++++.+.|++++++++........+.+.+..          ...
T Consensus       325 ~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~----------~~~  394 (447)
T PRK00451        325 SNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPK----------PAE  394 (447)
T ss_pred             ccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCC----------CHH
Confidence            010 1112222233334443322  246788899999999999998877877521111112233310          123


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ++++++++ +|+.+.....+..+  ...+.+|++++..+|++|+++++++|++++
T Consensus       395 ~~~~~L~~-~gi~~~~~~~~~~~--~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        395 EVNEALLE-KGILGGYDLGRYYP--ELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             HHHHHHHh-cCCCCCcccccccC--CcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            67777655 46654221111100  012459999999999999999999998764

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.83  E-value=1.2e-17  Score=170.83  Aligned_cols=292  Identities=18%  Similarity=0.221  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-  223 (483)
                      +...+||+++|+++|.+.+++++||++|+..++.++         .++||.|+++...|.++..++...|.+++.++.+ 
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~  142 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL  142 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence            457899999999999999999999999999998875         3789999999999999999998889888776542 


Q ss_pred             -----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcccc
Q 011567          224 -----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTE  298 (483)
Q Consensus       224 -----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~  298 (483)
                           |++++++.+..          ++++|++.+++   |...++++|.++|++||+++|+|++|++|..-. |+.. .
T Consensus       143 ~~~~id~~~le~~i~~----------~tkaVi~~~~~---G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~-g~~~-G  207 (438)
T PRK15407        143 PTYNIDASLLEAAVSP----------KTKAIMIAHTL---GNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYD-GRMT-G  207 (438)
T ss_pred             CcCCcCHHHHHHHcCc----------CCeEEEEeCCC---CChhhHHHHHHHHHHCCCEEEEECccchhhhcC-Ceee-e
Confidence                 56667665532          26777777653   677889999999999999999999999876422 2211 1


Q ss_pred             ccCCCCCceeEEEccc--ccccc-CCCceeeccH-HHHHH---HHhcCCc------------------------------
Q 011567          299 HCGVPVDKIDIVTAAM--GHALA-TEGGFCTGSA-RVVDH---QRLSSSG------------------------------  341 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~--~K~lg-~~GG~i~~~~-~~~~~---~~~~~~~------------------------------  341 (483)
                      .+|      |+.++||  +|.+. +.||+++.++ ++.+.   ++..+..                              
T Consensus       208 ~~g------d~~~fSf~~~k~~~~geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (438)
T PRK15407        208 TFG------DIATLSFYPAHHITMGEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKY  281 (438)
T ss_pred             ccC------ceEEEeCCCCCCccccCceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccc
Confidence            122      6666677  46564 4578876654 44333   2222110                              


Q ss_pred             ----eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC-ceeec--CCCCC---EEEEEecCCCCC
Q 011567          342 ----YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-LSIAS--NPESP---IVFLILEKSTGS  411 (483)
Q Consensus       342 ----~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~-~~i~~--~~~~~---i~~l~l~~~~~~  411 (483)
                          ..|...++.+.+|.++..|+.++   +..++-+++.+++.+.|.++++ +.+..  ....+   .+.+.+.+..+ 
T Consensus       282 ~~~~~G~n~rmsel~AAig~~qL~~l~---~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  357 (438)
T PRK15407        282 TYSHLGYNLKITDMQAAIGLAQLEKLP---GFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAG-  357 (438)
T ss_pred             cccccccccCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCC-
Confidence                01223478899999988888775   4677788888999999987754 22211  11112   33444532111 


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeeccccc------cc------CCCCC-------ceEEEccCCCCHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSML------DK------CRLPV-------GIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~------~~------~~~~~-------~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      .     .-.++.+. |+++||.......+.+      ..      ...|.       .|-+.++..+|++|+++++++|+
T Consensus       358 ~-----~Rd~l~~~-L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~  431 (438)
T PRK15407        358 F-----TRVELVKY-LEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIE  431 (438)
T ss_pred             C-----CHHHHHHH-HHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHH
Confidence            0     12255664 5567987653321111      00      11121       27777788889999999999999


Q ss_pred             HHHH
Q 011567          473 RISA  476 (483)
Q Consensus       473 ~~~~  476 (483)
                      ++++
T Consensus       432 ~~~~  435 (438)
T PRK15407        432 EFFG  435 (438)
T ss_pred             HHHh
Confidence            9875

>PRK05939 hypothetical protein; Provisional

Probab=99.83  E-value=9.6e-19  Score=176.82  Aligned_cols=213  Identities=16%  Similarity=0.159  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhH---HHhHhhhcCCeEEEecCCCHHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG---IQNGLYLSRSTVVYFKHNDMDSLRN  230 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s---~~~g~~~s~~~v~~~~~~d~~~Le~  230 (483)
                      +...+||++|+++.|.+.++++++|.+|+..++.++.++||.|++....|++   ....+...|.++..++..|++++++
T Consensus        47 p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~  126 (397)
T PRK05939         47 PTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAA  126 (397)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence            6678999999999999999999999999999999999999999998887654   3345666788999998888888888


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEE
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIV  310 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~  310 (483)
                      .+..          ++++|+++.+.+++|.+.|+++|+++|++||+++|+|++++.+..          ++....++|++
T Consensus       127 ~l~~----------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~----------~~~~~~gaDiv  186 (397)
T PRK05939        127 AIRP----------NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL----------FRPKDVGASLV  186 (397)
T ss_pred             hCCC----------CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc----------cCccccCCEEE
Confidence            7743          378999999999999999999999999999999999999864321          11111245999


Q ss_pred             EccccccccCCC----ceeeccHH--------HHH-------------HHHhcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          311 TAAMGHALATEG----GFCTGSAR--------VVD-------------HQRLSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       311 ~~s~~K~lg~~G----G~i~~~~~--------~~~-------------~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      +.|++|.+++.|    |.++.+..        +.+             .++... .-.+++.++|..+-.....++.+  
T Consensus       187 v~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~p~~a~l~~rgl~tl--  263 (397)
T PRK05939        187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKG-LRDMGATLSSEAAHRIAIGAETL--  263 (397)
T ss_pred             EecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHH-HHhcCCCCCHHHHHHHHcCcCcH--
Confidence            999999998654    33332221        111             111100 01234556777776665555544  


Q ss_pred             CcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          366 NPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                       ..+.++..+++..+.+.|++.|.+
T Consensus       264 -~~R~~~~~~na~~la~~L~~~p~V  287 (397)
T PRK05939        264 -ALRVDRSCSNALALAQFLEAHPKV  287 (397)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCCCc
Confidence             346777778888899999876643

>PRK08637 hypothetical protein; Provisional

Probab=99.82  E-value=1.6e-17  Score=168.59  Aligned_cols=279  Identities=15%  Similarity=0.119  Sum_probs=176.6

Q ss_pred             EEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecC--C----CHHHHHHHHHHhhhhhhhccCc
Q 011567          173 ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKH--N----DMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       173 i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~--~----d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      ++.+++.+++..++.+++++||.|+++.++|..+...+. ..|.+++.++.  +    |++++++.++....      ..
T Consensus        73 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~------~~  146 (388)
T PRK08637         73 IVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYN------KG  146 (388)
T ss_pred             eEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhcc------CC
Confidence            444555688888999999999999999999888877654 57888887764  2    56777776652111      13


Q ss_pred             cEEEEEecccCCCCCccC---hHHHHHHHHH-----cCcEEEEeCccccccccCCCC-ccccc-cCCCCCce-eEEEccc
Q 011567          246 RRYIVVEAVYQNSGQIAP---LDELIRLKEK-----YRFRVFLDESNSFGVLGRSGR-GLTEH-CGVPVDKI-DIVTAAM  314 (483)
Q Consensus       246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k-----~~~~li~DEa~s~g~lg~~G~-g~~~~-~~v~~~~~-Di~~~s~  314 (483)
                      ++++++...+|++|...+   +++|+++|++     |++++|+||+|....+..... .+... .+.. +.+ -+.++|+
T Consensus       147 ~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~-~~vi~i~~~s~  225 (388)
T PRK08637        147 KVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLH-SNILAVKLDGA  225 (388)
T ss_pred             CEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhccc-ccceEEEeccc
Confidence            567777778999999888   6777777765     999999999998655432110 11111 1221 122 2345699


Q ss_pred             cccccCCC---ceeec------cHHHHHHHHhcCC---ceeecCCCcHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHH
Q 011567          315 GHALATEG---GFCTG------SARVVDHQRLSSS---GYVFSASLPPYLASAAITAIDV---LEENPDLITKLKKNTAI  379 (483)
Q Consensus       315 ~K~lg~~G---G~i~~------~~~~~~~~~~~~~---~~~fs~~~~p~~~aaa~~al~~---l~~~~~~~~~l~~~~~~  379 (483)
                      ||.++.+|   ||++.      ++++++.+.....   ...+. +.|.+..+++.+.++.   .....+.+..++++.+.
T Consensus       226 SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~  304 (388)
T PRK08637        226 TKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS-NGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEK  304 (388)
T ss_pred             cccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC-CCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            99987666   99863      3677766543110   01111 2345555555555531   11112234456666666


Q ss_pred             HHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +.+.|++.   .++.+..+..+.++++.++.         ....++++.+++++||.+....         ...+||+++
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~l~~~l~~~~gv~~~~~~---------~~~iRi~~~  366 (388)
T PRK08637        305 TKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG---------VDAEELRVHLLEKYGIGTIALN---------ETDLRIAFS  366 (388)
T ss_pred             HHHHHHhhCCCCCcccccccceEEEEecCCh---------HHHHHHHHHHhhhcceEEEecc---------CCceEEEee
Confidence            66666543   14555544456677777631         1234677777766799876321         134999997


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      . .++++++++++.|+++++.+
T Consensus       367 ~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        367 C-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             c-CCHHHHHHHHHHHHHHHHhc
Confidence            6 78999999999999988753

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=6e-18  Score=170.53  Aligned_cols=212  Identities=15%  Similarity=0.147  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.++++++++|++|+..++.++.++||.|++..+.|++....+    ...+.++..++..|+++++
T Consensus        52 pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~  131 (386)
T PRK08045         52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALR  131 (386)
T ss_pred             ccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHH
Confidence            457899999999999888999999999999999999999999999888887544322    1233466666656777777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|+++.+.|++|.+.|+++|.++|+++|+++|+||+|..+...   +.    ..   ..+|+
T Consensus       132 ~~l~~----------~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~---~p----l~---~gaDi  191 (386)
T PRK08045        132 AALAE----------KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ---NP----LA---LGADL  191 (386)
T ss_pred             Hhccc----------CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC---Cc----hh---hCCCE
Confidence            76643          2678999999999999999999999999999999999999765331   11    11   23489


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|.+++    .||++++ ++++.+.++....  ..+..++|+.+..+..+|+.+   +..+++..+++..+.+.|
T Consensus       192 vv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~--~~g~~~~p~~~~l~~rgl~tl---~~R~~~~~~na~~la~~L  266 (386)
T PRK08045        192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN--NIGVTGGAFDSYLLLRGLRTL---VPRMELAQRNAQAIVKYL  266 (386)
T ss_pred             EEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHH
Confidence            99999999963    2466544 5777666543221  224456788887777777655   347788888999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+.+
T Consensus       267 ~~~p~v  272 (386)
T PRK08045        267 QTQPLV  272 (386)
T ss_pred             HcCCCE
Confidence            877644

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.82  E-value=1.1e-17  Score=183.51  Aligned_cols=348  Identities=13%  Similarity=0.090  Sum_probs=222.3

Q ss_pred             eeEEEeecCCCCCCCCChHHH-HHHHHHHHhcCCCCCC-CCCcccChHHHHHHHHHHHhhhCCC--C-EEEe-cccHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLL-ESCTSALEKYGVGSCG-PRGFYGTIDVHLDCEARIAKFLGTP--D-SILY-SYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~-~a~~~~l~~~g~g~~~-~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~-~sG~~a~  182 (483)
                      .-|+|.++...    ..|... +++.+.+..+..+..+ .....-..+...+.++.+++++|.+  + .|+| +++++++
T Consensus        35 ~iYLD~Aatt~----~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~al  110 (805)
T PLN02724         35 VVYLDHAGATL----YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAAL  110 (805)
T ss_pred             CEeEeCCCCCC----CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHH
Confidence            46888887532    234444 4444454543222221 1111113457789999999999963  3 3455 5677888


Q ss_pred             Hhhhhhh-ccCCcEEEEcCCchhHHHhHhh---hcCCeEEEecCC-----------CH----HHHHHHHHH-hhhhhhhc
Q 011567          183 FSAIPCF-CKKGDLIVADEGVHWGIQNGLY---LSRSTVVYFKHN-----------DM----DSLRNTLER-VTADNKRA  242 (483)
Q Consensus       183 ~~ai~~~-~~~gdiI~~~~~~h~s~~~g~~---~s~~~v~~~~~~-----------d~----~~Le~~l~~-~~~~~~~~  242 (483)
                      ..++..+ .++||.|++....|.++.....   ..|.++.+++.+           ++    ++|++.++. .... ...
T Consensus       111 nlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~-~~~  189 (805)
T PLN02724        111 KLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKR-EDD  189 (805)
T ss_pred             HHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccc-ccc
Confidence            8887776 4678988888888887664433   246777766543           11    234433210 0000 000


Q ss_pred             cCccEEEEEecccCCCCCccChHHHHHHHHHc--------CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc
Q 011567          243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY--------RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM  314 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~--------~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~  314 (483)
                      ..++++|++.++.+.+|.+.|++.+.++++..        ++++++|.+|+.|...         .++...++|++++|.
T Consensus       190 ~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~p---------iDv~~~~~Dfl~~S~  260 (805)
T PLN02724        190 GEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSP---------PDLSRYPADFVVVSF  260 (805)
T ss_pred             CCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCC---------CChhhcCCCEEEEec
Confidence            12457999999999999999999775555532        3689999999977542         344434569999999


Q ss_pred             ccccc-CCC-ceeeccHHHHHHHHhc--CC-------------------ceeec-CCCcHHHHHHHHHHHHHHhc--CcH
Q 011567          315 GHALA-TEG-GFCTGSARVVDHQRLS--SS-------------------GYVFS-ASLPPYLASAAITAIDVLEE--NPD  368 (483)
Q Consensus       315 ~K~lg-~~G-G~i~~~~~~~~~~~~~--~~-------------------~~~fs-~~~~p~~~aaa~~al~~l~~--~~~  368 (483)
                      +|.+| +.| |+++.+++..+.+...  +.                   ...|. ++.|...+++..++++++.+  .+.
T Consensus       261 HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~  340 (805)
T PLN02724        261 YKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISA  340 (805)
T ss_pred             ceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHH
Confidence            99998 555 8887777776654421  11                   01122 23555666677788888875  256


Q ss_pred             HHHHHHHHHHHHHHhhccCC------CceeecC--------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567          369 LITKLKKNTAILRTGLSDIH------GLSIASN--------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV  434 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~~------~~~i~~~--------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v  434 (483)
                      +.++.+++.+++.+.|++++      ++.++++        .++|++.|.+....+..-..     ..+..++.++||.+
T Consensus       341 I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~-----~~v~~l~~~~gI~v  415 (805)
T PLN02724        341 IAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGH-----REVEKLASLSGIQL  415 (805)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCH-----HHHHHHHHhcCcEE
Confidence            78889999999999998875      4666643        25689998886543221111     11334556679999


Q ss_pred             Eeecccccc---c---------------------------CCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          435 VTSKRSMLD---K---------------------------CRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       435 ~~~~~~~~~---~---------------------------~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      +.+..+...   .                           ..+.+.+|+|+...+|.+|||+++++|++..
T Consensus       416 R~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        416 RTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             eeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            877553311   0                           0112459999999999999999999999865

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.82  E-value=2.9e-18  Score=175.09  Aligned_cols=149  Identities=16%  Similarity=0.193  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.+.++++++|++|+..++.++.++||.|++....|++..    ..+...|.++..++.+|+++++
T Consensus        57 p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~  136 (418)
T TIGR01326        57 PTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFE  136 (418)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHH
Confidence            456899999999999999999999999999999999999998888877665443    3345678889889888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+.+          ++++|++|.+.+++|.+.|+++|+++|++||+++|+||+++.+....       ...   ..+|+
T Consensus       137 ~~l~~----------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~-------~l~---~g~Di  196 (418)
T TIGR01326       137 KAIDE----------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCR-------PID---HGADI  196 (418)
T ss_pred             HhcCc----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCC-------chh---cCCeE
Confidence            77743          26788899999999999999999999999999999999997553211       111   23599


Q ss_pred             EEccccccccCCC
Q 011567          310 VTAAMGHALATEG  322 (483)
Q Consensus       310 ~~~s~~K~lg~~G  322 (483)
                      ++.|++|++++.|
T Consensus       197 vv~S~sK~l~g~G  209 (418)
T TIGR01326       197 VVHSATKYIGGHG  209 (418)
T ss_pred             EEECccccccCCc
Confidence            9999999998644

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.82  E-value=5e-18  Score=175.26  Aligned_cols=341  Identities=14%  Similarity=0.111  Sum_probs=200.6

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh-hh-C---C--C-CEEEecccHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK-FL-G---T--P-DSILYSYGLS  180 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~-~~-g---~--e-~~i~~~sG~~  180 (483)
                      +.++|++-+.+ ++..++.+.+ +.+.+.  |.+.+.|   .|..+..+++.+...+ .+ +   .  + +.++.+++++
T Consensus       100 ~~~i~l~~g~p-~~~~~~~v~e-~~~~~~--~~~Y~~~---~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~  172 (527)
T PRK09275        100 RDAVSYVRDQL-GFDADEFVYE-LVDGII--GDNYPVP---DRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA  172 (527)
T ss_pred             HHHHhhcCCCC-CCCCCHHHHH-HHHHHh--cCCCCCC---CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            35677777643 7766666777 445553  2222222   2333334443332221 11 2   1  2 3445566678


Q ss_pred             HHHhhhhh-----hccCCcEEEEcCCchhHHHhHhhhcC--CeEEEecC-------CCHHHHHHHHHHhhhhhhhccCcc
Q 011567          181 TMFSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLSR--STVVYFKH-------NDMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       181 a~~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s~--~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      |+..++.+     ++++||.|++..+++..+...+.+.+  ..++.++.       .|.+++++++..          ++
T Consensus       173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~----------~t  242 (527)
T PRK09275        173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP----------SI  242 (527)
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC----------CC
Confidence            88888775     68999999999999999888777765  44444432       145566554321          25


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE  321 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~  321 (483)
                      ++|++..++|++|.+.+   +++|+++|++  +++++|.||+|+.... . ...+.   ...+ +..|++.||||++|..
T Consensus       243 kai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~-~~s~~---~~~~-~~~I~v~SfSK~f~mt  316 (527)
T PRK09275        243 KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD-D-FRSLF---AVLP-YNTILVYSFSKYFGAT  316 (527)
T ss_pred             CEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc-c-ccCHH---HhCC-CCEEEEeehhhhccCc
Confidence            66666677899999998   7889999965  5999999999986432 1 11111   1122 3368889999999977


Q ss_pred             C---ceeeccHH-----HHHHH--------------------------------HhcCCceeecCCCcHHHHHHHHHHH-
Q 011567          322 G---GFCTGSAR-----VVDHQ--------------------------------RLSSSGYVFSASLPPYLASAAITAI-  360 (483)
Q Consensus       322 G---G~i~~~~~-----~~~~~--------------------------------~~~~~~~~fs~~~~p~~~aaa~~al-  360 (483)
                      |   ||++++++     +++.+                                +.... ++..+...|...++++.++ 
T Consensus       317 G~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~-~~t~~~s~p~Q~a~al~~~~  395 (527)
T PRK09275        317 GWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVAL-NHTAGLSTPQQVQMALFSLF  395 (527)
T ss_pred             HhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHH-hhccCCCCHHHHHHHHHHHH
Confidence            7   99988875     33222                                11111 1222223455444332111 


Q ss_pred             HHHhcC----cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC----CCchh----hHHHHHHHHHHHHH
Q 011567          361 DVLEEN----PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST----GSMKN----DLQLLEDIADWALK  428 (483)
Q Consensus       361 ~~l~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~----~~~~~----~~~~~~~i~~~~l~  428 (483)
                      ..+++.    .+.++.++++.+.+.+.|. + ++....+..+..+++.+....    +..-.    ......+++.++++
T Consensus       396 all~~~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~  473 (527)
T PRK09275        396 ALLDEEDAYKKAMKDIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAE  473 (527)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHh
Confidence            112221    2456677777777777762 2 222222334455555553210    00000    00013567888888


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +.||.+.|+.....    .++.+|+++. ..+++++.++.+.|++++.+...
T Consensus       474 e~gV~v~PG~~Fg~----~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        474 ETGVVLLPGGGFGG----PEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             cCCEEEeCchhhCC----CCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            88999998865431    1345999984 36889999999999999877644

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=7.6e-18  Score=170.42  Aligned_cols=283  Identities=12%  Similarity=0.134  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|++++|++.|.+.++++++|+.|+..++. +.++||.|++....|++..    ..+...|.++..++..|+++++
T Consensus        54 p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~  132 (390)
T PRK08064         54 PTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVA  132 (390)
T ss_pred             hhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHH
Confidence            5678999999999999999999999999988886 6788998888887776433    3345578888888877877777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+.+          ++++|+++.+.+++|.+.|+++|.++|+++|+++++|++|+.+....   .    ..   ..+|+
T Consensus       133 ~~l~~----------~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---~----~~---~g~Di  192 (390)
T PRK08064        133 QNIKP----------NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQK---P----LD---LGADV  192 (390)
T ss_pred             HhcCC----------CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccC---c----hh---hCCcE
Confidence            66532          36899999999999999999999999999999999999987553221   1    11   23489


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|.+++    .+|+++. ++++.+.++....  .++..++|..+..+...++.   .+..+++..++...+.+.|
T Consensus       193 vv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~--~~g~~~~~~~a~l~~~gl~t---l~~R~~~~~~~a~~la~~L  267 (390)
T PRK08064        193 VLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN--SFGAVLGVQDCWLVLRGLKT---LHVRLEHSSETANKIALYL  267 (390)
T ss_pred             EEeecceeccCCccceeEEEEeCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCc---HHHHHHHHHHHHHHHHHHH
Confidence            99999999963    2476554 5677776654332  23445566666654444433   2456777788888888888


Q ss_pred             ccCCCc--------------eeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE---EEeecccc---
Q 011567          385 SDIHGL--------------SIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF---VVTSKRSM---  441 (483)
Q Consensus       385 ~~~~~~--------------~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~---v~~~~~~~---  441 (483)
                      ++.+.+              .+..   ...+.++.+.+++        .+.+.+    ++++.+++   ++.+...+   
T Consensus       268 ~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--------~~~~~~----f~~~l~l~~~~~s~G~~~sl~~  335 (390)
T PRK08064        268 QEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--------EEAVRQ----FVSHVKLPVFAVSLGAVESILS  335 (390)
T ss_pred             hcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--------HHHHHH----HHHhCCcceEcccCCCCcceeE
Confidence            765432              1111   1345688888842        112233    34444442   22111100   


Q ss_pred             ----cccCC----------C-CCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          442 ----LDKCR----------L-PVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       442 ----~~~~~----------~-~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                          ..++.          . +..||+|+....+++.|+.+.++|+++
T Consensus       336 ~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        336 YPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             CCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence                01111          1 234999999998888888888888764

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=3.4e-18  Score=173.21  Aligned_cols=213  Identities=15%  Similarity=0.206  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCC-CHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHN-DMDSL  228 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-d~~~L  228 (483)
                      +...+||+.+|++.|.+.++.++||++|+..++.++.++||.|++....|+++...    +...|.++..++.+ |++++
T Consensus        61 Ptv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l  140 (432)
T PRK06702         61 PTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEI  140 (432)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Confidence            56889999999999999999999999999999999999999999999988876665    55668899888875 88888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          ++++|++|.+.++++.+.++++|+++|++||+++|+|++++...+       +.-+.   ..+|
T Consensus       141 ~~~I~~----------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-------~~pl~---~GAD  200 (432)
T PRK06702        141 VALAND----------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-------CQAFE---HGAN  200 (432)
T ss_pred             HHhCCc----------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-------CChhh---cCCC
Confidence            887754          367888999999999999999999999999999999999752211       11111   2348


Q ss_pred             EEEccccccccC----CCceeeccH----------HHH---------------------HHHHhcCCceeecCCCcHHHH
Q 011567          309 IVTAAMGHALAT----EGGFCTGSA----------RVV---------------------DHQRLSSSGYVFSASLPPYLA  353 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~~~~----------~~~---------------------~~~~~~~~~~~fs~~~~p~~~  353 (483)
                      |++.|++|.+++    .||.++...          ++.                     ...+.. ....++..++|+.+
T Consensus       201 Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~sp~~a  279 (432)
T PRK06702        201 IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ-LLRDYGNCMSPFNA  279 (432)
T ss_pred             EEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHH-HHHHccCCCCHHHH
Confidence            999999999973    345554211          111                     001100 01123456789988


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      ..++..|+.+   +.+.++..+|+..+.+.|++.+.+
T Consensus       280 ~l~~rgL~Tl---~lR~~r~~~Na~~la~~L~~~p~V  313 (432)
T PRK06702        280 YISNIGLETL---HLRMERHSENALAVAKWLADHERI  313 (432)
T ss_pred             HHHHhccCcH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            8887777655   347778889999999999887654

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=4.8e-18  Score=173.25  Aligned_cols=213  Identities=20%  Similarity=0.198  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...++|+++|++.|.+.+++++||++|+..++.++.++||.|++....|.++...+    ...|.++..++.+|+++++
T Consensus        64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~  143 (433)
T PRK08134         64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWR  143 (433)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHH
Confidence            568899999999999999999999999999999888999999998888877665443    3367888888878888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|+++.+.+++|.+.|+++|.++|++||+++|+|.+++.+.+..   .    ..   ..+|+
T Consensus       144 ~~i~~----------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~---p----l~---~GaD~  203 (433)
T PRK08134        144 AAIRP----------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLR---P----FE---HGADL  203 (433)
T ss_pred             HhcCC----------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c----hh---cCCCE
Confidence            87753          37889999999999999999999999999999999999997654321   1    11   24599


Q ss_pred             EEccccccccCCC----ceeeccHH--------------------------------HHHHHHhcCCceeecCCCcHHHH
Q 011567          310 VTAAMGHALATEG----GFCTGSAR--------------------------------VVDHQRLSSSGYVFSASLPPYLA  353 (483)
Q Consensus       310 ~~~s~~K~lg~~G----G~i~~~~~--------------------------------~~~~~~~~~~~~~fs~~~~p~~~  353 (483)
                      ++.|.+|.+|+.|    |+++....                                .....+.. ....++..++|..|
T Consensus       204 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~G~~ls~~~A  282 (433)
T PRK08134        204 VYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARRE-GLRDFGACLSPMNA  282 (433)
T ss_pred             EEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHH-HHHhcCCCCCHHHH
Confidence            9999999998544    55442110                                00001100 01123445778877


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      ...+..|+.+   +.+.++..+++..+.+.|++.+.+
T Consensus       283 ~l~~~gL~tl---~~R~~~~~~nA~~la~~L~~~p~V  316 (433)
T PRK08134        283 WQLLQGIETL---PLRMERHVANTRKVVAFLASHPAV  316 (433)
T ss_pred             HHHhcCCCcH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            7776666554   457888889999999999887643

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=3.6e-18  Score=174.21  Aligned_cols=214  Identities=17%  Similarity=0.203  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++.|.+.+++++||++|+..++.++.++||.|++....|+....    .+...|.+++.++..|+++++
T Consensus        64 p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~  143 (431)
T PRK08248         64 PTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFE  143 (431)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHH
Confidence            4578899999999999999999999999999999999999999998887765433    345578889899888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|+++.+.+++|.+.|+++|.++|++||+++|+|++++.+...   ..      +. ..+|+
T Consensus       144 ~ai~~----------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~---~p------l~-~gaDi  203 (431)
T PRK08248        144 AAITD----------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLL---RP------IE-HGADI  203 (431)
T ss_pred             HhcCC----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccC---Ch------hH-cCCCE
Confidence            77643          2678888999999999999999999999999999999998643211   11      11 34599


Q ss_pred             EEccccccccCC----CceeeccHHHH-----------------------H--------HHHhcCCceeecCCCcHHHHH
Q 011567          310 VTAAMGHALATE----GGFCTGSARVV-----------------------D--------HQRLSSSGYVFSASLPPYLAS  354 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~~~~-----------------------~--------~~~~~~~~~~fs~~~~p~~~a  354 (483)
                      ++.|++|.+|+.    ||+++.+.+..                       +        +..........+..++|..|.
T Consensus       204 vv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~  283 (431)
T PRK08248        204 VVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSF  283 (431)
T ss_pred             EEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH
Confidence            999999999854    46665433210                       0        000000112234567888888


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       355 aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      .....|+.+   +.+.++..+++..+.+.|++.+++
T Consensus       284 l~~rgl~tl---~~R~~~~~~nA~~la~~L~~~p~v  316 (431)
T PRK08248        284 LLLQGLETL---HLRMERHSENALAVAKFLEEHEAV  316 (431)
T ss_pred             HHhcCcCcH---HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            776666554   347788889999999999887754

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=6e-18  Score=170.28  Aligned_cols=211  Identities=12%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++.|.+.++++++|++++..++ .+.++||.|++..+.|++...    .+...|.++..++..|+++++
T Consensus        50 p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~  128 (377)
T PRK07671         50 PTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVE  128 (377)
T ss_pred             hHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHH
Confidence            567899999999999999999999998877655 577899999988887775443    234457888888877888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|++|.+.+++|.+.++++|.++|+++|+++++||+++.+..++   .    ..   ..+|+
T Consensus       129 ~ai~~----------~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~---p----~~---~g~Di  188 (377)
T PRK07671        129 EAIRP----------NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS---P----IS---LGADI  188 (377)
T ss_pred             HhcCC----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC---h----hh---hCCeE
Confidence            77643          36899999999999999999999999999999999999987543321   1    11   23489


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|++++    .||+++. ++++.+.++....  ..++.++|..+..++..++.+.   ..+++..++...+.+.|
T Consensus       189 vv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~--~~g~~~~~~~a~l~~~~l~tl~---~R~~~~~~na~~la~~L  263 (377)
T PRK07671        189 VLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN--STGGILGPQDSWLLLRGLKTLG---IRMEEHETNSRAIAEFL  263 (377)
T ss_pred             EEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH--hhcCCCCHHHHHHHHcCcChHH---HHHHHHHHHHHHHHHHH
Confidence            99999999973    3576554 5667665543221  1234567877777666655543   36777788888999988


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+++
T Consensus       264 ~~~~~v  269 (377)
T PRK07671        264 NNHPAV  269 (377)
T ss_pred             HcCCCe
Confidence            876644

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.81  E-value=4.6e-18  Score=170.07  Aligned_cols=227  Identities=13%  Similarity=0.100  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhc--CCeEEEecCCCHHHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS--RSTVVYFKHNDMDSLRNT  231 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s--~~~v~~~~~~d~~~Le~~  231 (483)
                      +...+||++||++.|.+.+++++||.+|+..++. +.++||.|++....++....-+...  ...+......|++++++.
T Consensus        54 p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  132 (364)
T PRK07269         54 PTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAA  132 (364)
T ss_pred             ccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHh
Confidence            4568899999999999999999999999998884 5689998888877766544332221  111211112477777776


Q ss_pred             HHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEE
Q 011567          232 LERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVT  311 (483)
Q Consensus       232 l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~  311 (483)
                      ++.          ++++|++|.+.+++|.+.++++|+++|+++|+++++|++++.+..+   +.    .+   ..+|+++
T Consensus       133 i~~----------~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~---~p----l~---~gaDivv  192 (364)
T PRK07269        133 IEE----------DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ---RP----IE---LGADIVL  192 (364)
T ss_pred             cCc----------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC---Cc----hh---hCCcEEE
Confidence            643          3689999999999999999999999999999999999997543322   11    11   3448999


Q ss_pred             ccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567          312 AAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       312 ~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      .|++|.+++    .||++++ ++++.+.++... . ..+..++|+.++.++..|+.+   +..+++.++++..+.+.|++
T Consensus       193 ~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~-~~G~~~s~~~a~l~~~~L~tL---~~r~~~~~~na~~~a~~L~~  267 (364)
T PRK07269        193 HSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-N-TTGAVLSPFDSYLLMRGLKTL---SLRMERSTANAQEVVAFLKK  267 (364)
T ss_pred             ecCceeccCCCcccceEEEeCcHHHHHHHHHHH-H-HhCCCCCHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHh
Confidence            999999974    4688766 566666654221 1 223457899888888777765   34778888999999999988


Q ss_pred             CCCce-eecCCCCCEEEEEec
Q 011567          387 IHGLS-IASNPESPIVFLILE  406 (483)
Q Consensus       387 ~~~~~-i~~~~~~~i~~l~l~  406 (483)
                      .+++. +.-++.+.++.+.+.
T Consensus       268 ~p~v~~v~ypg~gg~~sf~~~  288 (364)
T PRK07269        268 SPAVKEVLYTGKGGMISFKVA  288 (364)
T ss_pred             CCCccEEeCCCcCcEEEEEEC
Confidence            77653 443556788888874

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.81  E-value=3.1e-17  Score=168.17  Aligned_cols=338  Identities=13%  Similarity=0.106  Sum_probs=193.1

Q ss_pred             eEEEeecCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEe-cccHH
Q 011567          110 EVVNFASANYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILY-SYGLS  180 (483)
Q Consensus       110 ~~id~~s~~~lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~-~sG~~  180 (483)
                      ..+||..++..-... .+.+.+++.+.++.....  ..-..|+...-..+|++.||+++    |.   ++.|+. +++.+
T Consensus        31 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~  108 (416)
T PRK09440         31 GAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLT--EALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQS  108 (416)
T ss_pred             CceeccCCCCCccCCHHHHHHHHHHHHhcCcccc--cccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHH
Confidence            468988875532211 124555655555431100  00001222222345555555554    42   244555 55558


Q ss_pred             HHHhhhhhhcc-----CCcEEEE-cCCchhHHHhHhhhc------CCeEEEecC------CCHHHHHHHHHHhhhhhhhc
Q 011567          181 TMFSAIPCFCK-----KGDLIVA-DEGVHWGIQNGLYLS------RSTVVYFKH------NDMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       181 a~~~ai~~~~~-----~gdiI~~-~~~~h~s~~~g~~~s------~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~  242 (483)
                      ++..++.++++     +||.|++ ..+++..+.......      +..+...+.      -|++.|+     ...     
T Consensus       109 al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~-----  178 (416)
T PRK09440        109 AFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH-----IDE-----  178 (416)
T ss_pred             HHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc-----cCC-----
Confidence            88888888884     5888888 677776655433211      122222221      1444444     111     


Q ss_pred             cCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEcccccc
Q 011567          243 KKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMGHA  317 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~K~  317 (483)
                        +++++++...+|++|.+.+   +++|+++|++|++++|+||+|+.....     . .+.+..+  .+.-|+++||||+
T Consensus       179 --~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-----~-~~~~~~~~~~~~vI~~~SfSK~  250 (416)
T PRK09440        179 --DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-----I-IFSEATPLWNPNIILCMSLSKL  250 (416)
T ss_pred             --CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-----c-chhhcCccccCCeEEEeccccc
Confidence              2567777777899999998   788999999999999999999642111     0 0011111  2235888999996


Q ss_pred             ccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCc-HHHHHHHHHHHHHHHhhccC-C-
Q 011567          318 LATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENP-DLITKLKKNTAILRTGLSDI-H-  388 (483)
Q Consensus       318 lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~-~~~~~l~~~~~~l~~~L~~~-~-  388 (483)
                       +.+|   ||+++++++++.+......+..+  .+.+...++.++++.-.   ... .+++.++++.+.+++.|.+. + 
T Consensus       251 -~~pGlRiG~~i~~~~l~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~  327 (416)
T PRK09440        251 -GLPGVRCGIVIADEEIIEALSNMNGIISLA--PGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPD  327 (416)
T ss_pred             -CCCcceEEEEeCCHHHHHHHHHHHHHhccC--CCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             6555   99999999988876544333332  34455555555553111   101 13444555666666666542 2 


Q ss_pred             -CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc--ccCC--CCCceEEEccCCCCHHH
Q 011567          389 -GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML--DKCR--LPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       389 -~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~--~~~~--~~~~lRi~~~~~~t~ed  463 (483)
                       ++.+..+..+.++++.++....    +   ..++++.+ +++||.+.++.....  ....  ....+||+++.  ++++
T Consensus       328 ~~~~~~~p~gg~fiw~~~~~~~~----~---~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~--~~~~  397 (416)
T PRK09440        328 EPCLIHKPEGAIFLWLWFKDLPI----T---TEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ--DDEE  397 (416)
T ss_pred             CCeEEecCCCceEEEEECCCCCC----C---HHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecC--CHHH
Confidence             3454445567888888753110    1   22456654 557999998754321  1000  01359999873  7999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 011567          464 LVKACESLKRISAVVLR  480 (483)
Q Consensus       464 i~~~~~~l~~~~~~~~~  480 (483)
                      +++++++|++++++...
T Consensus       398 l~~~i~~l~~~~~~~~~  414 (416)
T PRK09440        398 IEKGIAILAEEVEKAYA  414 (416)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999887543

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.81  E-value=8.8e-18  Score=183.32  Aligned_cols=306  Identities=13%  Similarity=0.117  Sum_probs=205.0

Q ss_pred             cChHHHHHHHHHHHhhhCCCCEEEecccH----HHHHhhhhhhccC-Cc----EEEEcCCchhHHHhHhhhcCCeEEEec
Q 011567          151 GTIDVHLDCEARIAKFLGTPDSILYSYGL----STMFSAIPCFCKK-GD----LIVADEGVHWGIQNGLYLSRSTVVYFK  221 (483)
Q Consensus       151 g~~~~~~~l~~~La~~~g~e~~i~~~sG~----~a~~~ai~~~~~~-gd----iI~~~~~~h~s~~~g~~~s~~~v~~~~  221 (483)
                      |..+...++++.|++++|.+.+++..+++    .|+..+++++.+. ||    +|+++...|++........|.+++.++
T Consensus       565 g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~  644 (993)
T PLN02414        565 GYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVG  644 (993)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEec
Confidence            55667789999999999997777664444    6888889988755 77    999999999999888888899998887


Q ss_pred             CC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcc
Q 011567          222 HN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL  296 (483)
Q Consensus       222 ~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~  296 (483)
                      .+     |+++|++.++...+       ++++|++....+.+|...|+++|.++|+++|+++++|.++..+..+.     
T Consensus       645 ~d~~G~vDle~L~~~i~~~~~-------~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l-----  712 (993)
T PLN02414        645 TDAKGNINIEELRKAAEAHKD-------NLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL-----  712 (993)
T ss_pred             cCCCCCcCHHHHHHHHhccCC-------CeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc-----
Confidence            64     78899988875433       27888888888888999999999999999999999999998764432     


Q ss_pred             ccccCCCCCceeEEEcccccccc-CC-----C-ceeeccHHHHHHHHhcC----Ccee--ec----CCCc--HH-HHHHH
Q 011567          297 TEHCGVPVDKIDIVTAAMGHALA-TE-----G-GFCTGSARVVDHQRLSS----SGYV--FS----ASLP--PY-LASAA  356 (483)
Q Consensus       297 ~~~~~v~~~~~Di~~~s~~K~lg-~~-----G-G~i~~~~~~~~~~~~~~----~~~~--fs----~~~~--p~-~~aaa  356 (483)
                      ..   ....++|++++|.+|+|+ +.     | |++..++.+...+-...    .++.  +.    ++.+  ++ .+.++
T Consensus       713 ~~---p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l  789 (993)
T PLN02414        713 TS---PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALIL  789 (993)
T ss_pred             CC---ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHH
Confidence            11   111345999999999885 22     1 67777766554432110    0000  00    1111  22 22333


Q ss_pred             HHHHHHHhc---C--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 011567          357 ITAIDVLEE---N--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDG  431 (483)
Q Consensus       357 ~~al~~l~~---~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~G  431 (483)
                      ..++.++..   +  .+..++...++.+++++|.+..++.+.++ .+++++=.+-+-............+++++++ ++|
T Consensus       790 ~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~-~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~G  867 (993)
T PLN02414        790 PISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGK-NGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYG  867 (993)
T ss_pred             HHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCC-CCCeeeeEEEeccccccccCCCHHHHHHHHH-HcC
Confidence            344444432   1  23366677889999999977434433322 2343222111100000000011356888766 569


Q ss_pred             EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +......+|.      ++.+|++++-..|++|||+++++++.+..++-
T Consensus       868 ihapt~~~pv------~~~lmiepTE~~skeelDrf~~al~~i~~e~~  909 (993)
T PLN02414        868 FHAPTMSWPV------PGTLMIEPTESESKAELDRFCDALISIREEIA  909 (993)
T ss_pred             cEEeeecccc------CCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            9876654431      35699999999999999999999998887764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=6.2e-18  Score=172.28  Aligned_cols=213  Identities=17%  Similarity=0.200  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEec-CCCHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFK-HNDMDSL  228 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~-~~d~~~L  228 (483)
                      +...++|++++++.|.+.+++++||++|+..++.++.++||.|++....|+++.    ..+...|.++..++ .+|++++
T Consensus        69 pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l  148 (437)
T PRK05613         69 PTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESW  148 (437)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHH
Confidence            667899999999999999999999999999999888899999998888888764    33455688888886 4577777


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          .+++|++|...+++|.+.|+++|.++|+++|+++|+|.+++.|.+-   +..  .     ..+|
T Consensus       149 ~~~l~~----------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~---~p~--~-----~GaD  208 (437)
T PRK05613        149 QAAVQP----------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALV---RPL--E-----LGAD  208 (437)
T ss_pred             HHhCCc----------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccccc---ChH--H-----hCCC
Confidence            776643          2678888998888999999999999999999999999999765431   111  1     2349


Q ss_pred             EEEccccccccCC----CceeeccHHHH------------------------------H-----HHHhcCCceeecCCCc
Q 011567          309 IVTAAMGHALATE----GGFCTGSARVV------------------------------D-----HQRLSSSGYVFSASLP  349 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~~~~~~------------------------------~-----~~~~~~~~~~fs~~~~  349 (483)
                      +++.|++|.+++.    ||+++++....                              +     ..+. .....+++.++
T Consensus       209 ivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~  287 (437)
T PRK05613        209 VVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARA-GLLRDTGATLS  287 (437)
T ss_pred             EEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHH-HHHHhcCCCCC
Confidence            9999999999853    57776432200                              0     0000 00112345678


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      |..|......|+.+   +.+.++..+++..+.+.|++.|.+
T Consensus       288 p~~a~l~~rgl~TL---~lR~~~~~~nA~~lA~~L~~hp~V  325 (437)
T PRK05613        288 PFNAWVTAQGLDTL---SLRLERHNENAIKVAEFLNNHEKV  325 (437)
T ss_pred             HHHHHHHHcccCcH---HHHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888777666655   347788889999999999887654

>PLN02368 alanine transaminase

Probab=99.81  E-value=7.8e-18  Score=170.79  Aligned_cols=242  Identities=12%  Similarity=0.137  Sum_probs=162.9

Q ss_pred             HHHHHHHHhhh----CC---CCEEEe-cccHHHHHhhhhhhc-cCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----
Q 011567          157 LDCEARIAKFL----GT---PDSILY-SYGLSTMFSAIPCFC-KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----  222 (483)
Q Consensus       157 ~~l~~~La~~~----g~---e~~i~~-~sG~~a~~~ai~~~~-~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----  222 (483)
                      .+|++.||+++    |.   ++.|++ +++.+++..++.++. .+||.|++..+++..+...+...|.+++.++.     
T Consensus       110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~  189 (407)
T PLN02368        110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESEN  189 (407)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccC
Confidence            45556666554    52   244555 555678888899887 69999999999999999999999988877653     


Q ss_pred             --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC--c
Q 011567          223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR--G  295 (483)
Q Consensus       223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~--g  295 (483)
                        -|+++|++.++.....    ..+++++++...+|++|.+.+   +++|+++|++||+++|.||+|+..+++....  .
T Consensus       190 ~~~d~~~le~~i~~~~~~----~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s  265 (407)
T PLN02368        190 WGLDVNNLRQSVAQARSK----GITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFIS  265 (407)
T ss_pred             CCCCHHHHHHHHHHHhhc----CCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccc
Confidence              2677888777642211    012555555556889999998   7888999999999999999998766542111  1


Q ss_pred             ccccc-CCCC----CceeEEEccccccc-cCCC---ceee---ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-
Q 011567          296 LTEHC-GVPV----DKIDIVTAAMGHAL-ATEG---GFCT---GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-  362 (483)
Q Consensus       296 ~~~~~-~v~~----~~~Di~~~s~~K~l-g~~G---G~i~---~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-  362 (483)
                      +.+.. ++.+    ...-|+++||||++ |.+|   ||++   +++++++.+.... ...++  .+.+...++.++++. 
T Consensus       266 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~--~~~~~Q~aa~~~l~~~  342 (407)
T PLN02368        266 AKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALS--PNVSGQIFMGLMVNPP  342 (407)
T ss_pred             HHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCC--CCcHHHHHHHHHhCCC
Confidence            11111 1211    22468889999998 6666   9987   5788888776542 22232  345555556666641 


Q ss_pred             ----------HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          363 ----------LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       363 ----------l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                                .++..++++.++++++.+.+.|++++|+.+..+.++.+++..+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i  395 (407)
T PLN02368        343 KPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQI  395 (407)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCC
Confidence                      1111246778899999999999998898876554555555444

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.80  E-value=1.6e-17  Score=166.65  Aligned_cols=278  Identities=15%  Similarity=0.136  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++||++. .++++++++|++|+..++.++.++||.|++..+.|+.+...    +...|.+++.++.++...  
T Consensus        51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--  127 (366)
T PRK07582         51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--  127 (366)
T ss_pred             ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--
Confidence            45789999999999 68899999999999999999999999888877766555433    234578888887765322  


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ..    .+       .+++|+++.+.+++|.+.|+++|.++|+++|+++++|++|... .|.   ..   ...   .+|+
T Consensus       128 ~~----~~-------~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~-~~~---~p---~~~---g~Di  186 (366)
T PRK07582        128 AA----LA-------GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP-LGQ---RP---LEL---GADL  186 (366)
T ss_pred             Hh----cc-------CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc-ccc---Cc---hhc---CCcE
Confidence            11    11       3678889999999999999999999999999999999998532 221   11   111   3489


Q ss_pred             EEccccccccC-C---Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT-E---GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~-~---GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|++++ .   +||+++ ++++.+.++....  ..+..++|+.+..+...++.+   +...++..+++..+.+.|
T Consensus       187 vv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~--~~g~~~~~~~a~l~~r~l~tl---~~R~~~~~~na~~la~~L  261 (366)
T PRK07582        187 VVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL--LAGAIPGPFEAWLAHRSLGTL---GLRFARQCANALAVAELL  261 (366)
T ss_pred             EEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHH
Confidence            99999999963 2   488876 4677666553221  113346788877776666644   346688889999999999


Q ss_pred             ccCCCcee-e-----cCC-----------CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc---ccc-c
Q 011567          385 SDIHGLSI-A-----SNP-----------ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR---SML-D  443 (483)
Q Consensus       385 ~~~~~~~i-~-----~~~-----------~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~---~~~-~  443 (483)
                      ++.+.+.- .     +++           .+.++.+.+++        ...    +.+++++.+++......   .++ .
T Consensus       262 ~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~--------~~~----~~~~~~~l~~~~~~~s~G~~~sl~~  329 (366)
T PRK07582        262 AGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD--------AAA----AERFVAASRLVVAATSFGGVHTSAD  329 (366)
T ss_pred             HhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC--------HHH----HHHHHHhCCcceecccCCCccchhh
Confidence            88775432 1     112           35688888841        111    22344444554431111   111 0


Q ss_pred             -----cCCCC-CceEEEccCCCCHHHHHHHHHHHH
Q 011567          444 -----KCRLP-VGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       444 -----~~~~~-~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                           ....+ .-||+++....+++.|+.+.++|+
T Consensus       330 ~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        330 RRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             hHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence                 00112 349999999877777777666664

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.80  E-value=1.4e-17  Score=164.94  Aligned_cols=330  Identities=20%  Similarity=0.225  Sum_probs=194.9

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHH----HHHHHHhhhCCC----CEEE-eccc
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLD----CEARIAKFLGTP----DSIL-YSYG  178 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~----l~~~La~~~g~e----~~i~-~~sG  178 (483)
                      +.|++..+ |+    ..|.+.++....+. +|..|..|.|.+.|+ +...+    ..+++.++|+.+    .+-+ .-||
T Consensus        21 ~~l~LiaSEN~----~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~-~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SG   95 (399)
T PF00464_consen   21 STLNLIASENY----MSPAVREALGSDLTNKYAEGYPGKRYYGGC-EYIDEIEELAIERAKELFGAEPKEWYANVQPHSG   95 (399)
T ss_dssp             HSEE-CTT---------HHHHHHHTSGGGGS-TTEETTEESSSST-HHHHHHHHHHHHHHHHHHT-STTTEEEE---SSH
T ss_pred             cCccccCcccc----cCHHHHHHhCCcceeeccccCCCcccccCc-chhhHHHHHHHHHHHHHhCCCcccceEEeecCCc
Confidence            46777765 55    45777777666554 477777777755554 33333    456677788988    5543 3899


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHh-Hhh--h-----cC--CeEEEecCC------CHHHHHHHHHHhhhhhhhc
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQN-GLY--L-----SR--STVVYFKHN------DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~-g~~--~-----s~--~~v~~~~~~------d~~~Le~~l~~~~~~~~~~  242 (483)
                      +.|+.++..+++++||.|+.-...|+.... +..  .     ++  -+.+.++.+      |++.+++++++..      
T Consensus        96 s~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k------  169 (399)
T PF00464_consen   96 SQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK------  169 (399)
T ss_dssp             HHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC------
Confidence            999999999999999998876555543221 111  1     11  234444432      8899999988865      


Q ss_pred             cCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccc-cC
Q 011567          243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHAL-AT  320 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~l-g~  320 (483)
                         .++|++.+-.  .-...|+++++++|++.|++|++|-+|..|.+.   .|.. .-+    ..+|++++|.+|+| |+
T Consensus       170 ---PklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa---~g~~~~P~----~~ADvvt~sThKtl~GP  237 (399)
T PF00464_consen  170 ---PKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIA---GGLFPNPF----PYADVVTGSTHKTLRGP  237 (399)
T ss_dssp             ----SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHH---TTSS--GC----CTSSEEEEESSGGG-SS
T ss_pred             ---CCEEEECchh--ccCccCHHHHHHHHHhcCcEEEeccccccccee---hheecCcc----ccceEEEeecccccccc
Confidence               3577775422  234457999999999999999999999877654   1222 112    23699999999999 68


Q ss_pred             CCceeecc--------------HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhc
Q 011567          321 EGGFCTGS--------------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       321 ~GG~i~~~--------------~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      .||+++.+              .++.+.+...-.+...++..+...++.|.+..+.+. +..+..+++.+|++.|.+.|.
T Consensus       238 rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~  317 (399)
T PF00464_consen  238 RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQ  317 (399)
T ss_dssp             S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999888              677777765433333332222222333333333232 225688899999999999999


Q ss_pred             cCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCCC
Q 011567          386 DIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHS  460 (483)
Q Consensus       386 ~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~t  460 (483)
                      +. |+++.. ..++.++.+.+....    .+.    .-+.+.|++.||.+.....|.-.....+.||||..+    ....
T Consensus       318 ~~-G~~v~~ggTd~H~vlvd~~~~~----~~g----~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~  388 (399)
T PF00464_consen  318 ER-GFKVVTGGTDNHQVLVDLRSFG----IDG----KEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMK  388 (399)
T ss_dssp             HT-T-EEGGGS-SSSEEEEEGGGGT----S-H----HHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--
T ss_pred             hC-CcEEEECCCCCCeEEEEecccc----cch----HHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCC
Confidence            85 999874 357888888875321    011    224456788899998765544322223578999754    3567


Q ss_pred             HHHHHHHHHHH
Q 011567          461 EADLVKACESL  471 (483)
Q Consensus       461 ~edi~~~~~~l  471 (483)
                      ++|++++.+.|
T Consensus       389 e~dm~~iA~~I  399 (399)
T PF00464_consen  389 EEDMKEIAELI  399 (399)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhC
Confidence            88888776654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=2e-17  Score=165.88  Aligned_cols=213  Identities=12%  Similarity=0.070  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+....|++.|+.+-+.+.+++++||.+|+..++.++.++||.|++..+.|++...    .+...|.++..++..+.+.+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l  142 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGI  142 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHH
Confidence            46778899999999998999999999999999999999999999998888877653    34566788888876666667


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.+++          ++++|++|.+.|+++.+.|+++|+++|+++|+++++|++++...+-+   .    ..   ..+|
T Consensus       143 ~~al~~----------~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~---p----l~---~GaD  202 (395)
T PRK05967        143 AKLMRP----------NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFR---P----LD---FGVD  202 (395)
T ss_pred             HHhcCc----------CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecC---h----hH---cCCC
Confidence            666643          37899999999999999999999999999999999999997543221   1    11   2348


Q ss_pred             EEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          309 IVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++.|++|.+++.    ||.++++++..+.++..  ....+..++|..|...+..++-+   .-+.++..+++..+.+.|
T Consensus       203 ivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~--~~~~G~~~~p~da~l~~rgl~Tl---~lR~~~~~~na~~lA~~L  277 (395)
T PRK05967        203 ISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA--HGTLGLCAGPDDTYQILRGLRTM---GIRLEHHRKSALEIARWL  277 (395)
T ss_pred             EEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH--HHHcCCCCCHHHHHHHHcCcccH---HHHHHHHHHHHHHHHHHH
Confidence            9999999999742    47777777765554322  11235567888877776666555   346777788888888888


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.|.+
T Consensus       278 ~~hp~v  283 (395)
T PRK05967        278 EGRPDV  283 (395)
T ss_pred             HhCCCC
Confidence            876644

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.80  E-value=2.5e-17  Score=169.81  Aligned_cols=338  Identities=14%  Similarity=0.106  Sum_probs=196.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHH-HHHHhhhC----CC---CEEEecccHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE-ARIAKFLG----TP---DSILYSYGLST  181 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~-~~La~~~g----~e---~~i~~~sG~~a  181 (483)
                      .++|++.+.+ ++. .|.+..++.+.+.  +.+.+.|   .|..+..+++. +.+.+.++    .+   +.++.+++++|
T Consensus        95 ~~i~l~~g~p-~~~-~~~~~~~~~~~~~--~~~Y~~p---~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~a  167 (521)
T TIGR03801        95 DIISYVIDQL-GFD-PDAFLYEMCDGII--GDNYPVP---DRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAA  167 (521)
T ss_pred             HHHhhcCCCC-CCC-CCHHHHHHHHHhh--cCCCCCC---CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHH
Confidence            5677776633 664 4566666666653  2222111   12223333333 23333322    12   34455667788


Q ss_pred             HHhhhhh-----hccCCcEEEEcCCchhHHHhHhhhc--CCeEEEecCC------------CHHHHHHHHHHhhhhhhhc
Q 011567          182 MFSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLS--RSTVVYFKHN------------DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       182 ~~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s--~~~v~~~~~~------------d~~~Le~~l~~~~~~~~~~  242 (483)
                      +..++.+     ++.+||.|++..+++..+...+.+.  +.+++.++..            |.+++++++.   .     
T Consensus       168 l~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~-----  239 (521)
T TIGR03801       168 MCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---P-----  239 (521)
T ss_pred             HHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC---C-----
Confidence            8887766     7899999999999998888777665  4565555421            3345554322   1     


Q ss_pred             cCccEEEEEecccCCCCCccC---hHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccc
Q 011567          243 KKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA  317 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~  317 (483)
                        ++++|++..+.|++|.+.+   +++|+++|++|  ++++|.||+|+.... . ...+.+   ..+ +..|++.|+||+
T Consensus       240 --~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-~-~~sl~~---~~~-~~vI~v~SfSK~  311 (521)
T TIGR03801       240 --SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-D-FRSLFA---ELP-YNTIGVYSFSKY  311 (521)
T ss_pred             --CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-c-ccchhh---hCC-CCEEEEEcchhh
Confidence              2566666566889999988   78889999987  999999999985432 1 111212   122 235888999999


Q ss_pred             ccCCC---ceeeccHH-HHH------------HH------------------------HhcCCceeecCCCcHHHH--H-
Q 011567          318 LATEG---GFCTGSAR-VVD------------HQ------------------------RLSSSGYVFSASLPPYLA--S-  354 (483)
Q Consensus       318 lg~~G---G~i~~~~~-~~~------------~~------------------------~~~~~~~~fs~~~~p~~~--a-  354 (483)
                      +|..|   ||++++++ +.+            .+                        +......+.+.+ .|...  + 
T Consensus       312 fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s-~p~Q~q~al  390 (521)
T TIGR03801       312 FGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLS-TPQQVQMAL  390 (521)
T ss_pred             ccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCC-cHHHHHHHH
Confidence            99777   99988754 211            11                        111111222222 23333  2 


Q ss_pred             -HHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCcee--ecCCCCCEEEEEecCCCCC---chh-----hHHHHHHH
Q 011567          355 -AAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSI--ASNPESPIVFLILEKSTGS---MKN-----DLQLLEDI  422 (483)
Q Consensus       355 -aa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i--~~~~~~~i~~l~l~~~~~~---~~~-----~~~~~~~i  422 (483)
                       ++.+.++.-+. ..+..+.++++.+.+.+.|    |+.+  ..+..+..+++.+......   .+-     +.....++
T Consensus       391 ~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~  466 (521)
T TIGR03801       391 FSLFALMDKENAYKAETKDICRRREKLLFRGL----GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDV  466 (521)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHH
Confidence             22223321111 1235666777777777776    3332  2233345566665421000   000     00013578


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +.+++++.||.+.|+.....    ..+.+|+++ +..++++++++.+.|++++.+...
T Consensus       467 ~~~L~~e~gV~v~PG~~Fg~----~~~~vRisl-a~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       467 LFRLAEETGIVLLPGGGFGG----PEWSVRVSL-ANLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             HHHHHHhCCEEEeCchhcCC----CCCeEEEEe-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999998865432    124599998 347899999999999999877643

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.80  E-value=1.9e-18  Score=168.62  Aligned_cols=219  Identities=17%  Similarity=0.235  Sum_probs=154.7

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---------  222 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---------  222 (483)
                      .....++++.+|+++|.++++++ +++++++..++.+++++||.|++++.+|.++..++...|.++++++.         
T Consensus        58 ~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~  137 (294)
T cd00615          58 TGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIA  137 (294)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcC
Confidence            45688999999999999988875 55568899999999999999999999999999999999988776532         


Q ss_pred             --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCCCCccccc
Q 011567          223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRSGRGLTEH  299 (483)
Q Consensus       223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~G~g~~~~  299 (483)
                        .|++++++.+++...       .+.++++.|  +.+|.+.|+++|+++|++||+++|+||+|+.+. ++.....    
T Consensus       138 ~~i~~~~l~~~l~~~~~-------~k~v~l~~p--~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~----  204 (294)
T cd00615         138 GGIPPETFKKALIEHPD-------AKAAVITNP--TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPS----  204 (294)
T ss_pred             CCCCHHHHHHHHHhCCC-------ceEEEEECC--CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCc----
Confidence              367888888765221       234455544  357999999999999999999999999997432 2111110    


Q ss_pred             cCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee-cCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLASAAITAIDVLE-ENPDLITKLKK  375 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f-s~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~  375 (483)
                       .....++|+++.|++|++++  .||++..+.+..+..+.......+ +++.+...+++..++++.+. +..+.++++.+
T Consensus       205 -~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~  283 (294)
T cd00615         205 -SAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE  283 (294)
T ss_pred             -chhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence             11113569999999999973  246654444322211111111122 33455556666667777765 34567888999


Q ss_pred             HHHHHHHhhc
Q 011567          376 NTAILRTGLS  385 (483)
Q Consensus       376 ~~~~l~~~L~  385 (483)
                      +.+.+++.|.
T Consensus       284 ~~~~~r~~l~  293 (294)
T cd00615         284 LALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02263 serine decarboxylase

Probab=99.80  E-value=6.6e-17  Score=163.28  Aligned_cols=305  Identities=13%  Similarity=0.058  Sum_probs=204.1

Q ss_pred             HHhcCCCCCCCCCccc-----ChHHHHHHHHHHHhhhCCCC----EEEecccHHHHHhhhhhhcc--CCcEEEEcCCchh
Q 011567          136 LEKYGVGSCGPRGFYG-----TIDVHLDCEARIAKFLGTPD----SILYSYGLSTMFSAIPCFCK--KGDLIVADEGVHW  204 (483)
Q Consensus       136 l~~~g~g~~~~~~~~g-----~~~~~~~l~~~La~~~g~e~----~i~~~sG~~a~~~ai~~~~~--~gdiI~~~~~~h~  204 (483)
                      +..++.+.+|.+...+     +.+...++-+.+++++|.+.    .++.++|+++|..++.+...  +..++++++..|+
T Consensus       110 ~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~  189 (470)
T PLN02263        110 LQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY  189 (470)
T ss_pred             HHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccH
Confidence            3344555455444444     44677778888888888642    67889999999998766543  3458999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCc---
Q 011567          205 GIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRF---  276 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~---  276 (483)
                      |+.+++.+.|.+++.++.+     |+++|++.+++...       ...+|+...-..++|.+.|+++|.++|++||+   
T Consensus       190 Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~-------~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~  262 (470)
T PLN02263        190 SVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANKD-------KPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQD  262 (470)
T ss_pred             HHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCCC-------CcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccC
Confidence            9999999999988877753     78899988865321       24555555555678999999999999999996   


Q ss_pred             --EEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-C-ceeeccHHHHHHHHhc-----CCceeecCC
Q 011567          277 --RVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRLS-----SSGYVFSAS  347 (483)
Q Consensus       277 --~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~~-----~~~~~fs~~  347 (483)
                        ||++|.+++++.+.. -+.. +.++-. ..+|-++.+.+|.++.+ + |.++.++..++.+...     ....+...+
T Consensus       263 ~iwlHVDAA~GG~~lPf-~~~~-~~~df~-~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gS  339 (470)
T PLN02263        263 RFYIHCDGALFGLMMPF-VKRA-PKVTFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS  339 (470)
T ss_pred             CeeEEEeccchhhHhhh-cccc-cccCCC-cCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCC
Confidence              999999998766521 1111 112211 23788899999999732 2 5554444443332111     111122223


Q ss_pred             CcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          348 LPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      -+...+.....+++.+-  ...+.+++..++++++.+.|++. |+....++.++++.+.-+.       +         .
T Consensus       340 R~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~-------~---------~  402 (470)
T PLN02263        340 RNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK-------D---------E  402 (470)
T ss_pred             CCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc-------h---------H
Confidence            23223344445565543  22467888888999999999987 7777667778877776321       1         1


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ... +|..+...          +..+++++...+|++.+|++++.|++..+..
T Consensus       403 ~~~-~gW~L~~~----------~~~~Hivvmphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        403 EFV-RRWQLACQ----------GNIAHVVVMPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             Hhh-cceEEccC----------CCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence            122 46766542          1238999988889999999999999887643

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.80  E-value=2.1e-17  Score=165.26  Aligned_cols=230  Identities=19%  Similarity=0.232  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L  228 (483)
                      .+....||++|+++-|.+.+++|+||.+|+.+++.++.++||.|++....++.+..-+    ...|.++..++..|++++
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l  133 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEAL  133 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHH
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHH
Confidence            3678899999999999999999999999999999999999999888887776665443    346888888988899999


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC-cEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR-FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~-~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      ++.++.          ++++|++|.+.|++..+.||++|+++|+++| +++++|.+.+...+-       ..+.   ..+
T Consensus       134 ~~~l~~----------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~-------~pL~---~Ga  193 (386)
T PF01053_consen  134 EAALRP----------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQ-------NPLE---LGA  193 (386)
T ss_dssp             HHHHCT----------TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC--------GGG---GT-
T ss_pred             Hhhccc----------cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeee-------ccCc---CCc
Confidence            988865          3889999999999999999999999999998 999999998643221       1111   224


Q ss_pred             eEEEccccccccC----CCceeecc--HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALAT----EGGFCTGS--ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG~i~~~--~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                      |+++.|++|.+++    .||.++.+  .++.+.++..  ...++..+.|..+......++.+   +.+.++..+++..+.
T Consensus       194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~--~~~~G~~~~p~da~ll~rgl~Tl---~~R~~~~~~nA~~lA  268 (386)
T PF01053_consen  194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF--RRLLGATLSPFDAWLLLRGLRTL---PLRMERQNENAEALA  268 (386)
T ss_dssp             SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH--HHHHT-B--HHHHHHHHHHHTTH---HHHHHHHHHHHHHHH
T ss_pred             eEEEeeccccccCCcceeeEEEEECchhhhhhhhcch--hhhcCccchHHHHHHHhcCCCcH---HHHHHHHHHHHHHHH
Confidence            9999999999973    35777754  4666655433  22344556788777776666554   457888899999999


Q ss_pred             HhhccCCCce-eecC----------------CCCCEEEEEecC
Q 011567          382 TGLSDIHGLS-IASN----------------PESPIVFLILEK  407 (483)
Q Consensus       382 ~~L~~~~~~~-i~~~----------------~~~~i~~l~l~~  407 (483)
                      +.|++.|.+. |.-+                ..+.++.+.++.
T Consensus       269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~  311 (386)
T PF01053_consen  269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG  311 (386)
T ss_dssp             HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred             HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence            9998876543 2111                234589999853

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.80  E-value=2e-17  Score=166.60  Aligned_cols=210  Identities=14%  Similarity=0.132  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++++++.|.+.+++++||++|+..++ .+.++||.|++....|.+...    .+...|.++..++..|+++++
T Consensus        50 p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~  128 (380)
T PRK06176         50 PTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIK  128 (380)
T ss_pred             hhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHH
Confidence            457889999999999999999999999998666 466899999888877765432    234457777777777888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.+++|.+.|+++|.++|++||+++|+|++++.+..++   .    .+   ..+|+
T Consensus       129 ~ai~~----------~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~---p----~~---~gaDi  188 (380)
T PRK06176        129 KAIKP----------NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQN---P----LL---LGADI  188 (380)
T ss_pred             HhcCc----------CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCC---c----cc---cCCCE
Confidence            76642          37889999999999999999999999999999999999998654321   1    11   23489


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|.+++    .||++++ ++++.+.++....  ..+..++|..+......++.+   +.+.++..++...+.+.|
T Consensus       189 vv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~~~l~~~gl~tl---~~R~~~~~~~a~~la~~L  263 (380)
T PRK06176        189 VVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN--AIGGVLGPQDSWLLQRGIKTL---GLRMEAHQKNALCVAEFL  263 (380)
T ss_pred             EEecCceeccCCccceeeEEEecHHHHHHHHHHHHH--HhcCCCCHHHHHHHHhccCcH---HHHHHHHHHHHHHHHHHH
Confidence            99999999974    3687766 4556555443211  112234555544443333322   335666667777777777


Q ss_pred             ccCCC
Q 011567          385 SDIHG  389 (483)
Q Consensus       385 ~~~~~  389 (483)
                      ++.+.
T Consensus       264 ~~~p~  268 (380)
T PRK06176        264 EKHPK  268 (380)
T ss_pred             HhCCC
Confidence            76554

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.80  E-value=5.3e-17  Score=165.52  Aligned_cols=198  Identities=17%  Similarity=0.233  Sum_probs=141.3

Q ss_pred             ChHHHHHHHHHHHhcCCCCCC-CCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCch
Q 011567          125 HEKLLESCTSALEKYGVGSCG-PRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVH  203 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~-~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h  203 (483)
                      ++++.+++.+.++.|+..... ..+.  ....+..+++.+++++|.+.++++++|++|+..++.+ ..+||.|++.+..|
T Consensus        94 ~~~vieAv~~~~~~y~~l~~~l~~g~--~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~  170 (454)
T TIGR00474        94 AEEAIEAVTDAARGYSNLEYDLETGK--RGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGEL  170 (454)
T ss_pred             CHHHHHHHHHHHhcccchhccccccc--cchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChh
Confidence            689999999999987521100 0001  1245789999999999999999999999999888865 46788888877654


Q ss_pred             h------HHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC--CC--CccChHHHHHH
Q 011567          204 W------GIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN--SG--QIAPLDELIRL  270 (483)
Q Consensus       204 ~------s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~--~G--~i~~L~~l~~l  270 (483)
                      .      .+...+...|.+++.++++   |++++++.+.   +       ++++|++++..+.  .|  .+.|+++|+++
T Consensus       171 v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~aI~---~-------~T~lv~~~h~sN~~~~G~~~~~dl~~I~~l  240 (454)
T TIGR00474       171 VEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDAIT---E-------NTALLLKVHTSNYRIVGFTEEVSIAELVAL  240 (454)
T ss_pred             hhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHhcC---c-------CCEEEEEEccCcccccCCCCCCCHHHHHHH
Confidence            2      3445677789999999874   4556665553   2       2677777766543  46  58899999999


Q ss_pred             HHHcCcEEEEeCccccccccCCCC-ccccc---cCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHHh
Q 011567          271 KEKYRFRVFLDESNSFGVLGRSGR-GLTEH---CGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRL  337 (483)
Q Consensus       271 ~~k~~~~li~DEa~s~g~lg~~G~-g~~~~---~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~  337 (483)
                      |++||+++++|.+  .|.++..+. |+...   ......++|++++|.+|++| +.||+++++++.++.++.
T Consensus       241 a~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~~l~~  310 (454)
T TIGR00474       241 GREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIERLKK  310 (454)
T ss_pred             HHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHHhhhh
Confidence            9999999999964  555654332 22110   11112456999999999996 558999999988876553

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.79  E-value=3.4e-17  Score=159.75  Aligned_cols=338  Identities=18%  Similarity=0.242  Sum_probs=206.7

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccCh--HHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI--DVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~--~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      -|+|..+.   |- -+|+|.+|..+.+..| .+..-++ .||..  +..++.++.+|++.|.+  +.+|++++|+++..+
T Consensus        45 vyld~~at---~p-~~~~Vldam~~~~~~~-~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlv  118 (428)
T KOG1549|consen   45 VYLDNQAT---GP-MDPRVLDAMLPYLLEY-LGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLV  118 (428)
T ss_pred             EEEecCcC---CC-CCHHHHHHHHHHHHHh-hcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHH
Confidence            47777765   33 5789999999988874 2222333 34443  44788899999999964  555557778999988


Q ss_pred             hhhhcc-CCc----EEEEcCCchhHHHhHhh---hcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          186 IPCFCK-KGD----LIVADEGVHWGIQNGLY---LSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       186 i~~~~~-~gd----iI~~~~~~h~s~~~g~~---~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++.+.. .+|    .|++-...|.++..+++   -.|..+..++.+     |.+.+++.++.          ++++|.+.
T Consensus       119 l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~----------~T~lv~I~  188 (428)
T KOG1549|consen  119 LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRS----------KTRLVSIM  188 (428)
T ss_pred             HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCC----------CceEEEEE
Confidence            876542 233    89998999999887665   346666666654     34444444433          48999999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      .+.++.|.+.|++||.++|+++|+.+++|.+|+.|...         .++..-++|+++.|.+|++|+.| |++..++ .
T Consensus       189 ~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~---------vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~-~  258 (428)
T KOG1549|consen  189 HVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP---------VDVQELNADFLSISAHKIYGPPGIGALYVRR-K  258 (428)
T ss_pred             ecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc---------ccHHHcCchheeeecccccCCCcceEEEEcc-C
Confidence            99999999999999999999999999999999976542         34444566999999999999876 7776654 1


Q ss_pred             HHHHH----hcCCce---eecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhcc-CCCceeecCCCC---C
Q 011567          332 VDHQR----LSSSGY---VFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSD-IHGLSIASNPES---P  399 (483)
Q Consensus       332 ~~~~~----~~~~~~---~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~---~  399 (483)
                      ..+++    ..+.+-   ..+++.++..+...-++.++...+ .-......+....+..++.. .++..+.+.+.+   .
T Consensus       259 ~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~  338 (428)
T KOG1549|consen  259 RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPG  338 (428)
T ss_pred             CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCccccccc
Confidence            11111    111111   123334444455555666666533 22233333445555554432 333333332221   1


Q ss_pred             EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc-c-------ccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR-S-------MLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       400 i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~-~-------~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      ...+.+....     ....+.+.....+.. |..+..... |       ..+.+....+|||++....|++|++++++.+
T Consensus       339 ~~~~~~~~~~-----g~~~~~~~~~~~l~s-~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i  412 (428)
T KOG1549|consen  339 LVSLSFPYVE-----GESLLMDLKDVALSS-GSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAI  412 (428)
T ss_pred             ceeeeccccc-----Ccchhhhhhhhhhcc-cchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHH
Confidence            2223332111     111122222222222 333322210 0       0111112356999999999999999999999


Q ss_pred             HHHHHHHH
Q 011567          472 KRISAVVL  479 (483)
Q Consensus       472 ~~~~~~~~  479 (483)
                      ++.+....
T Consensus       413 ~~~v~~~~  420 (428)
T KOG1549|consen  413 KKLVSLLR  420 (428)
T ss_pred             HHHHHhcc
Confidence            99887653

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.78  E-value=3.7e-16  Score=150.54  Aligned_cols=308  Identities=13%  Similarity=0.143  Sum_probs=207.2

Q ss_pred             CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCcc
Q 011567          171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +.++.++.+.+...+++.++.+||.|+++...+.+....++..|.+++.++.+    +++.|++++..-.....+.+++.
T Consensus       126 diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~  205 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPH  205 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCe
Confidence            34444555689999999999999999999999999999999999999998865    78999999987665544445555


Q ss_pred             EEEEEecccCCCCCccCh---HHHHHHHHHcCcEEEEeCccccccccCC--------C--C--c-----cccccCCCCCc
Q 011567          247 RYIVVEAVYQNSGQIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRS--------G--R--G-----LTEHCGVPVDK  306 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~--------G--~--g-----~~~~~~v~~~~  306 (483)
                      .+..+..-+|++|...++   ++|.+||+||++++|.||.|-+--++..        .  .  -     .....+++-+.
T Consensus       206 vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdG  285 (472)
T KOG0634|consen  206 VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDG  285 (472)
T ss_pred             EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccc
Confidence            666666677889998885   7899999999999999999987655520        0  0  0     11223445566


Q ss_pred             eeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC------cHHHHHHHHHHH
Q 011567          307 IDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN------PDLITKLKKNTA  378 (483)
Q Consensus       307 ~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~------~~~~~~l~~~~~  378 (483)
                      ..|-..||||-+++  .-||+.+++..++++-..+...+-+.  +.+......+.++..-++      .+++.....+..
T Consensus       286 rVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~p--Sg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn  363 (472)
T KOG0634|consen  286 RVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGP--SGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRN  363 (472)
T ss_pred             cEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999974  34999999988777644332222221  222222222333332221      234444445555


Q ss_pred             HHHHhhcc-CC-C-ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC-CC-ceEE
Q 011567          379 ILRTGLSD-IH-G-LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL-PV-GIRL  453 (483)
Q Consensus       379 ~l~~~L~~-~~-~-~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~-~~-~lRi  453 (483)
                      .+.+.|.+ ++ + +.+.++..+.++++.+.-........-...+++...++.++||.+.++....+..... .. -+|+
T Consensus       364 ~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRl  443 (472)
T KOG0634|consen  364 ALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRL  443 (472)
T ss_pred             HHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEE
Confidence            55556644 23 2 5666677788889988521111111222345566667778899999887655542211 11 3899


Q ss_pred             EccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          454 FVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       454 ~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +++. ...|+++++++++..++++.+..
T Consensus       444 s~a~-a~~e~l~~g~~rf~~~ike~f~~  470 (472)
T KOG0634|consen  444 SIAF-AEPEKLDEGIERFGSVIKEHFIT  470 (472)
T ss_pred             Eeec-CCHHHHHHHHHHHHHHHHHHhhc
Confidence            8866 57789999999999999987653

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.78  E-value=6.3e-17  Score=163.41  Aligned_cols=288  Identities=14%  Similarity=0.063  Sum_probs=192.6

Q ss_pred             hHHHHHHHHHHHhhhCCC---CEEEec-ccHHHHHhhhhhhccC-CcEEEEcCCchhHHHhH-h-hhcCC-eEEEecCCC
Q 011567          153 IDVHLDCEARIAKFLGTP---DSILYS-YGLSTMFSAIPCFCKK-GDLIVADEGVHWGIQNG-L-YLSRS-TVVYFKHND  224 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e---~~i~~~-sG~~a~~~ai~~~~~~-gdiI~~~~~~h~s~~~g-~-~~s~~-~v~~~~~~d  224 (483)
                      .+...+.++.++++++.+   ++++++ ||+.++..++..+.++ ++.++. ...|++-+.. + +..|. ++..++..+
T Consensus        47 ~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~  125 (378)
T PRK03080         47 KALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADY  125 (378)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCC
Confidence            357789999999999963   455564 8999999998887764 556555 4677664432 2 33466 666665431


Q ss_pred             --HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          225 --MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       225 --~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                        .-++++ ++.           ++.|.+.++.+.+|.+.|+++|.+  ++||+++++|.++++|...         +++
T Consensus       126 g~~~d~~~-i~~-----------~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~p---------idv  182 (378)
T PRK03080        126 GSLPDLSA-VDF-----------DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALP---------LDW  182 (378)
T ss_pred             CCCCCHhh-cCC-----------CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCC---------CCH
Confidence              112322 111           235778888888999999999999  7899999999999987542         333


Q ss_pred             CCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCc-----------------eeec---CCCcHH-HHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSG-----------------YVFS---ASLPPY-LASAAITA  359 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~-----------------~~fs---~~~~p~-~~aaa~~a  359 (483)
                        +++|++++|.+|+|+ +.| |++..+++..+.+.....+                 ..|.   ...++. ...+..++
T Consensus       183 --~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~a  260 (378)
T PRK03080        183 --SKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQ  260 (378)
T ss_pred             --HHCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHH
Confidence              457999999999996 466 8888888887765432110                 0111   112333 33445678


Q ss_pred             HHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecC---CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCE
Q 011567          360 IDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASN---PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV  432 (483)
Q Consensus       360 l~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~---~~~-~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv  432 (483)
                      ++++.+.   +.+.++.+++.+++++.|+++.++.+...   ..+ .++.+.+++.      +.....++...++++ |+
T Consensus       261 l~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~------~~~~~~~~~~~l~~~-~i  333 (378)
T PRK03080        261 LDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA------QAAVDAAAVAKLLRE-NG  333 (378)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc------hHHHHHHHHHHHHHc-CC
Confidence            8888653   46778889999999999998865655421   223 4677766431      001112345555554 77


Q ss_pred             EEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          433 FVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       433 ~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+....+..     .+..+|++++..+|++||++++++|++++++.
T Consensus       334 ~v~~g~~~~-----~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  374 (378)
T PRK03080        334 AVDIEPYRD-----APNGLRIWCGPTVEPADVEALTPWLDWAFERL  374 (378)
T ss_pred             eeccccccC-----CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            776543321     12459999999999999999999999987654

>PRK04311 selenocysteine synthase; Provisional

Probab=99.78  E-value=4.1e-16  Score=159.50  Aligned_cols=317  Identities=15%  Similarity=0.147  Sum_probs=194.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCC-CCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCc
Q 011567          124 GHEKLLESCTSALEKYGVGSC-GPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGV  202 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~-~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~  202 (483)
                      -++++.+++.+.+..|..... ...+..  .+.+..+++.+++++|.++++++++|++|+..++.++ ++||.|++.+..
T Consensus        98 l~~~v~eav~~~~~~~~~le~~l~~g~~--g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e  174 (464)
T PRK04311         98 LSEAAIEAVTEAARGYSNLEYDLATGKR--GSRDRALAALLCALTGAEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGE  174 (464)
T ss_pred             CCHHHHHHHHHHHhcccccccchhhccc--chHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchh
Confidence            357889999998887642110 000011  2446789999999999999999999999999888665 678878777654


Q ss_pred             hh------HHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC--CC--CccChHHHHH
Q 011567          203 HW------GIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN--SG--QIAPLDELIR  269 (483)
Q Consensus       203 h~------s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~--~G--~i~~L~~l~~  269 (483)
                      |.      .+...+...|.+++.++++   +++++++.+.+          ++++|++++..+.  .|  ...|+++|++
T Consensus       175 ~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~aI~~----------~TklV~~vh~sN~~i~G~~~~~dl~eI~~  244 (464)
T PRK04311        175 LVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQAINE----------NTALLLKVHTSNYRIEGFTKEVSLAELAA  244 (464)
T ss_pred             hhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHhcCc----------cCeEEEEEcCCCccccccCCcCCHHHHHH
Confidence            43      2344567789999888864   45566665532          2677777776653  44  6789999999


Q ss_pred             HHHHcCcEEEEeCccccccccCCC-CccccccCC---CCCceeEEEcccccccc-CCCceeeccHHHHHHHHhcCCceee
Q 011567          270 LKEKYRFRVFLDESNSFGVLGRSG-RGLTEHCGV---PVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       270 l~~k~~~~li~DEa~s~g~lg~~G-~g~~~~~~v---~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      +|++||+++++|..  .|.++..+ .|+.....+   -..++|++++|.+|.+| +.+|++++++++++.++.+...-..
T Consensus       245 lak~~gi~vivD~g--sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~~~~~r~l  322 (464)
T PRK04311        245 LGKEHGLPVVYDLG--SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKKHPLKRAL  322 (464)
T ss_pred             HHHHcCCeEEEECC--CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhhchhHHHH
Confidence            99999999999995  34444321 111111111   01356999999999996 5579999999998876633211111


Q ss_pred             cCCCcHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHhhccCC--Cc--eeecC-----------C
Q 011567          345 SASLPPYLASAAITAIDVLEE-------------NPDLITKLKKNTAILRTGLSDIH--GL--SIASN-----------P  396 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~-------------~~~~~~~l~~~~~~l~~~L~~~~--~~--~i~~~-----------~  396 (483)
                        ...-...++..+++.....             .....++++++++.+.+.|+...  ++  .+...           .
T Consensus       323 --r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~  400 (464)
T PRK04311        323 --RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVD  400 (464)
T ss_pred             --hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCC
Confidence              1122233333334432211             01124677778888888887653  22  33311           1


Q ss_pred             CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC--CEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          397 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKED--GVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       397 ~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~--Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      .-|-+.+.+.....       ...++.+ .|++.  .|+.+...          +.+.+-+- .+.++|++.+++.++++
T Consensus       401 ~~~~~~v~~~~~~~-------~~~~l~~-~lr~~~~~i~~r~~~----------~~~~ld~r-~~~~~~~~~~~~~~~~~  461 (464)
T PRK04311        401 RLPSAAVTLTPKDR-------SLEALAA-RLRLLPPPVIGRIED----------GRLLLDLR-TLEEEDEERLAAALLEA  461 (464)
T ss_pred             CCCeEEEEEeCCCC-------CHHHHHH-HHhcCCCCEEEEEEC----------CEEEEEeC-cCCHHHHHHHHHHHHHH
Confidence            12445555543211       1234444 35553  35554221          22455443 46889999999999887


Q ss_pred             HH
Q 011567          475 SA  476 (483)
Q Consensus       475 ~~  476 (483)
                      +.
T Consensus       462 ~~  463 (464)
T PRK04311        462 LN  463 (464)
T ss_pred             hh
Confidence            53

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.78  E-value=1.5e-16  Score=158.76  Aligned_cols=311  Identities=16%  Similarity=0.146  Sum_probs=198.4

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH-hhhcCCeEEEecC---------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYFKH---------  222 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g-~~~s~~~v~~~~~---------  222 (483)
                      .+-..+||+.+++++|.+.++.++||+.|...+.....++||.|  ...+|+....+ +...|...+.+..         
T Consensus        70 ~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~  147 (450)
T TIGR02618        70 SRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLN  147 (450)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccC
Confidence            34467999999999999999999999999766677788999977  55777666665 6777765444411         


Q ss_pred             -----C-CHHHHHHHHHHhhhhhhhccCccEEEEEecccC-CCCCccC---hHHHHHHHHHcCcEEEEeCcccccc--c-
Q 011567          223 -----N-DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGV--L-  289 (483)
Q Consensus       223 -----~-d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~--l-  289 (483)
                           | |++.|++.+++...      ..+++|.++-..+ .+|...|   ++++.++|++||+.+|.|.++.+|-  + 
T Consensus       148 ~p~~GniD~~~Le~aI~~~~~------~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I  221 (450)
T TIGR02618       148 IPFKGNVDLKKLQKLIDEVGA------DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFI  221 (450)
T ss_pred             CCCCCCcCHHHHHHHhccccC------cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhh
Confidence                 1 78889988864321      1234544444444 4577754   7999999999999999999998742  1 


Q ss_pred             -----cCCCCcc----ccccCCCCCceeEEEcccccccc-CCCceee-ccHHHHHHHHhcCCce---eecCCCcHHHHHH
Q 011567          290 -----GRSGRGL----TEHCGVPVDKIDIVTAAMGHALA-TEGGFCT-GSARVVDHQRLSSSGY---VFSASLPPYLASA  355 (483)
Q Consensus       290 -----g~~G~g~----~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~-~~~~~~~~~~~~~~~~---~fs~~~~p~~~aa  355 (483)
                           |..++.+    .+.+    ...|.++.|..|..+ ..||+++ +++++++..+.....+   .-.+.+..-.+.+
T Consensus       222 ~~re~g~~~~~i~ei~~e~~----~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~a  297 (450)
T TIGR02618       222 KEREQGYEDKSIAEILKEMM----SYADGCTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEA  297 (450)
T ss_pred             hcccccccCCCHHHHHHHHh----ccCcEEEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHH
Confidence                 1222222    1111    234888889999887 5599987 7888888776542222   1111111111112


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEE
Q 011567          356 AITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV  435 (483)
Q Consensus       356 a~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~  435 (483)
                      ..-+|+...+ ....++-..+.++|.+.|.+. |+++..+.+++.+++....-......+.--.+.++.++..+.||-..
T Consensus       298 la~gL~e~~~-~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~  375 (450)
T TIGR02618       298 MAIGIREAVD-YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSM  375 (450)
T ss_pred             HHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEE
Confidence            1223332222 235555666789999999987 99997777889998876432111112223355666666667777543


Q ss_pred             eec------ccccccCCCC--CceEEEccC-CCCHHHHHHHHHHHHHHHHH
Q 011567          436 TSK------RSMLDKCRLP--VGIRLFVSA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       436 ~~~------~~~~~~~~~~--~~lRi~~~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      -..      .|...+...+  .-+|++++- ..|.+++|.+++++..+.++
T Consensus       376 e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       376 ERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             eecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            211      1111111112  239997765 56999999999999887654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.77  E-value=2e-16  Score=151.08  Aligned_cols=332  Identities=16%  Similarity=0.216  Sum_probs=220.2

Q ss_pred             CCeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHh
Q 011567          107 SGKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFS  184 (483)
Q Consensus       107 ~G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~  184 (483)
                      ||...++..+.  +|.|+   |...+|+.+.+.++    |+.+..                 +..++.++.++++.|++.
T Consensus       106 eg~~~f~~la~fqdy~Gl---~~frqa~A~Fm~~~----r~~~v~-----------------fdP~~~Vv~~G~T~ane~  161 (471)
T KOG0256|consen  106 EGQSSFDELAMFQDYHGL---PSFRQAVAEFMERA----RGNRVK-----------------FDPERVVVTNGATSANET  161 (471)
T ss_pred             ccccchhhHhhcccccCc---hHHHHHHHHHHHHH----hCCCCc-----------------cCccceEEecccchhhHH
Confidence            44444444332  67666   67888888877775    121111                 134567888999999999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      .+.+++.+||..+++.+|+++...-++ ..|.+++++..   |    +.+.||..+++..+.    ..+++-+++..+.|
T Consensus       162 l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~----~~kVkGvlitNPsN  237 (471)
T KOG0256|consen  162 LMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKL----GLKVKGVLITNPSN  237 (471)
T ss_pred             HHHHhcCCCceeeecCCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHh----CCceeEEEEeCCCC
Confidence            999999999999999999988654444 35666665532   2    588999888776543    23466677777788


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC-cccccc---CCCCCceeEEEccccccccCCC---ceee
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHC---GVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~---~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      +-|++.+   |..+...+.++++.+|+||+|+..+++..+. .+.+..   ...++.+-| +-|+||-||.+|   |.+.
T Consensus       238 PLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHi-vyslSKD~GlpGfRvGviY  316 (471)
T KOG0256|consen  238 PLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHI-VYSLSKDFGLPGFRVGVIY  316 (471)
T ss_pred             CCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEE-EEEeccccCCCceEEEEEE
Confidence            8898887   8888888999999999999999988887431 112221   124555555 469999999888   7775


Q ss_pred             c-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          327 G-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       327 ~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      . ++.++...+..+ .|.--.+.....++..+.--++.++ .++..++++...+++-++|+++ |++......+.++++.
T Consensus       317 S~ne~VvsaA~kms-sf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvD  394 (471)
T KOG0256|consen  317 SNNEDVVSAATKMS-SFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVD  394 (471)
T ss_pred             ecChHHHHHHHHHh-hccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEE
Confidence            5 455666554332 1111111223333333332222222 1456788888889999999997 9998877677788887


Q ss_pred             ecCCC--CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKST--GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~--~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +..--  .+++.+.    ++.++.+.+-++.++|+...   +|.-|+.+|+|+. ...++.++-+++.|+..+.+
T Consensus       395 lr~lL~s~tfe~El----~Lw~~i~~~vklnlSpG~s~---~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  395 LRKLLTSLTFEGEL----ELWERILDNVKLNLSPGSSC---HCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             hHHhcCcCChHHHH----HHHHHHHHhhccccCCCCcc---eecCCCeEEEEec-cCCHHHHHHHHHHHHHHHHh
Confidence            65322  1222222    45556666658999887543   3444667999985 46677777799999988764

>PRK15029 arginine decarboxylase; Provisional

Probab=99.77  E-value=1.9e-16  Score=168.58  Aligned_cols=230  Identities=15%  Similarity=0.176  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------  223 (483)
                      .+..+.++..|+.+|.+++.+..+|+ .+|.+++.+.+++||.|++++.+|-|+..|+.++|+..+++...         
T Consensus       205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~  284 (755)
T PRK15029        205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGP  284 (755)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccC
Confidence            46788999999999999999886665 67888999999999999999999999999999999988876421         


Q ss_pred             -C-----HHHHHHHHHHhhhhhh-hccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc-cccCCCCc
Q 011567          224 -D-----MDSLRNTLERVTADNK-RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG-VLGRSGRG  295 (483)
Q Consensus       224 -d-----~~~Le~~l~~~~~~~~-~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g-~lg~~G~g  295 (483)
                       +     ++.+++.+++....-+ ..++..++|++.|.|.  |.+.++++|+++|+++++.|++||+|+.- .+.+   .
T Consensus       285 i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~--Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~---~  359 (755)
T PRK15029        285 IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD--GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNP---I  359 (755)
T ss_pred             CCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCc--ceeeCHHHHHHHHHhcCCeEEEECccccccccCc---c
Confidence             2     7889888877543210 1223347788888775  99999999999999999999999999642 1221   1


Q ss_pred             cccccCC-----CCCcee-EEEcccccccc--CCCceee--ccHHHHH--HHHhcCCceeecCCCcHHHHHHHHHHHHHH
Q 011567          296 LTEHCGV-----PVDKID-IVTAAMGHALA--TEGGFCT--GSARVVD--HQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       296 ~~~~~~v-----~~~~~D-i~~~s~~K~lg--~~GG~i~--~~~~~~~--~~~~~~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      +..+..+     .....| +++.|.+|.++  +.+.++-  +++..++  .++.. .....|+|.+-..+|..-.+.+++
T Consensus       360 ~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~-l~~~qSTSPSY~LmASLD~ar~~m  438 (755)
T PRK15029        360 YADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA-YMMHATTSPLYAICASNDVAVSMM  438 (755)
T ss_pred             ccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHH-HHHHcCCCcHHHHHHHHHHHHHHH
Confidence            2221222     113457 89999999997  3345542  2210122  22111 122234455555566666677777


Q ss_pred             hc--CcHHHHHHHHHHHHHHHhhccCCC
Q 011567          364 EE--NPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       364 ~~--~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      +.  ..++.++..+....+++.+.++++
T Consensus       439 ~~~~G~~l~~~~i~~~~~~r~~l~~~~~  466 (755)
T PRK15029        439 DGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence            64  456788888888889988876644

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.76  E-value=1e-16  Score=160.63  Aligned_cols=306  Identities=13%  Similarity=0.113  Sum_probs=196.4

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccCh-------HHHHHHHHHHHhhhCC--CC-EEEe-cccHHHHHhhhhhhcc-
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTI-------DVHLDCEARIAKFLGT--PD-SILY-SYGLSTMFSAIPCFCK-  191 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~-------~~~~~l~~~La~~~g~--e~-~i~~-~sG~~a~~~ai~~~~~-  191 (483)
                      .++.+.+|+.+.+..|+ +..  |+.+...       +...+.++.++++++.  ++ ++++ +||++++..++..+.+ 
T Consensus        10 ~p~~V~~a~~~~~~~~~-~~~--rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~   86 (355)
T cd00611          10 LPEEVLEQAQKELLDFN-GLG--MSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD   86 (355)
T ss_pred             CCHHHHHHHHHHHhhcc-cCC--ccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC
Confidence            46899999999887765 222  2222222       5678899999999995  23 4555 4489999999988876 


Q ss_pred             --CCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          192 --KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       192 --~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                        ++|.|+.....|.+ .+-++..|.++..++..      +..++++.  ...+       .+++|.+.+..+.+|.+.+
T Consensus        87 ~~~~~~i~~g~~~~~~-~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~--~~~~-------~~~lV~~~h~~t~tG~~~~  156 (355)
T cd00611          87 KGTADYVVTGAWSAKA-AKEAKRYGGVVVIVAAKEEGKYTKIPDVETW--DLAP-------DAAYVHYCSNETIHGVEFD  156 (355)
T ss_pred             CCeEEEEECCHHHHHH-HHHHHhcCCCcEEEecccccCCCCCCCHhhc--CCCC-------CCCEEEEeCCcccccEEcc
Confidence              66777664333322 22334456666666543      21222211  1112       3678888888888898733


Q ss_pred             hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCCce
Q 011567          264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSGY  342 (483)
Q Consensus       264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~~~  342 (483)
                           ++++.||+++++|.++++|.+.           ++.++.|+.+.|.+|.+|+.| |+++.+++..+.+......+
T Consensus       157 -----~i~~~~g~~~~VDa~qs~g~~~-----------idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~  220 (355)
T cd00611         157 -----EVPDTGGVPLVADMSSNILSRP-----------IDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSM  220 (355)
T ss_pred             -----eecccCCCeEEEEccccccCCC-----------CCHHHhCEEEeecccccCCCceEEEEECHHHHhhcccCCCCc
Confidence                 4566699999999999987542           233444566666899999887 88888888776543221110


Q ss_pred             e----------ecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCce-eec--CCCC-CEEEEEe
Q 011567          343 V----------FSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLS-IAS--NPES-PIVFLIL  405 (483)
Q Consensus       343 ~----------fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~-i~~--~~~~-~i~~l~l  405 (483)
                      .          ...+.|-....+..++++++.+.   +.+.++.+++.+++++.|++++|+. ...  ...+ .++.+.+
T Consensus       221 ~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~  300 (355)
T cd00611         221 LNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL  300 (355)
T ss_pred             ccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc
Confidence            0          01233444566666889988643   4678888999999999999987752 211  1245 3477776


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      .+.        ....++... +.+.|+.+.....       ..+.+|+++...+|++|||+++++|+++
T Consensus       301 ~~~--------~l~~~~~~~-~~r~G~~~~~~~~-------~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         301 GKE--------ELEKEFLKE-AEAAGMIGLKGHR-------SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             CCh--------hhhHHHHHH-HHHCCCcccCCCc-------ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            431        111233333 3456887433321       1245999999999999999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.76  E-value=3.7e-16  Score=154.35  Aligned_cols=232  Identities=17%  Similarity=0.190  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+....||+.++++-|.+.++.|+||.+|+.+++.++.++||.|+.....++++..-    ++..|.++..++..|.+.+
T Consensus        62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~  141 (396)
T COG0626          62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEAL  141 (396)
T ss_pred             CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHH
Confidence            356789999999999999999999999999999999999999999888777665432    3445677777766665555


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.+.+  +       ++++|++|++.|++-.+.|+++|+++++++|+++++|++++.+++-+   .    +.   ..+|
T Consensus       142 ~~~~~~--~-------~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~---P----L~---~GaD  202 (396)
T COG0626         142 EAAIKE--P-------NTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQR---P----LE---LGAD  202 (396)
T ss_pred             HHHhcc--c-------CceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccC---h----hh---cCCC
Confidence            554432  1       38999999999999999999999999999999999999987654321   1    11   3359


Q ss_pred             EEEccccccccC----CCceeeccHH-HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALAT----EGGFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~~~~~-~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |++.|.+|-+++    .||.++++.+ +.+.+...... ..++.+.|..+-..+..++-+.   -+.++..+|+..+.+.
T Consensus       203 IVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~-~~G~~l~p~dA~l~lRGlkTL~---~Rm~~~~~nA~~IA~~  278 (396)
T COG0626         203 IVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA-NTGAVLSPFDAWLLLRGLRTLA---LRMERHNENALKIAEF  278 (396)
T ss_pred             EEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh-hcCCCCCHHHHHHHHhccchHH---HHHHHHHHHHHHHHHH
Confidence            999999999973    4587776554 44443221111 2445677888877766666553   4678888888889999


Q ss_pred             hccCCCce-eecC----------------CCCCEEEEEecC
Q 011567          384 LSDIHGLS-IASN----------------PESPIVFLILEK  407 (483)
Q Consensus       384 L~~~~~~~-i~~~----------------~~~~i~~l~l~~  407 (483)
                      |++.+.+. +.-+                ..+.++.+.+++
T Consensus       279 L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~  319 (396)
T COG0626         279 LADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN  319 (396)
T ss_pred             HhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence            98866543 2211                246688888853

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.75  E-value=8.9e-16  Score=152.82  Aligned_cols=310  Identities=12%  Similarity=0.097  Sum_probs=201.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCccc-Ch---HHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEE
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYG-TI---DVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLI  196 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g-~~---~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI  196 (483)
                      +..+.+++.+.+..|.....+...... ..   +...++++.|.++++.+   +++++ +||+.|+++++..+.+++|.+
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~   83 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVA   83 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeE
Confidence            357889999998876521222211111 22   56788899999999952   35566 559999999999988777643


Q ss_pred             E-EcCCchh-HHHhHhhhcCCeEEEec------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567          197 V-ADEGVHW-GIQNGLYLSRSTVVYFK------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI  268 (483)
Q Consensus       197 ~-~~~~~h~-s~~~g~~~s~~~v~~~~------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~  268 (483)
                      + +..+.++ ...+-++..|. +..+.      ..+..+++++...  .       ..++|.+.+.-+.+|...|     
T Consensus        84 l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~v~~th~ETstGv~~~-----  148 (349)
T TIGR01364        84 DYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEIS--E-------DAAYVHYCANETIHGVEFR-----  148 (349)
T ss_pred             EEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCCC--C-------CCCEEEEcCCCCcccEecc-----
Confidence            3 3333332 23344455555 43333      3344444433211  1       2567777777777898776     


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCC-------
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSS-------  340 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~-------  340 (483)
                      ++++.|++++++|.++++|..           .++.++.|++++|..|++|+.| |+++.+++..+.+.....       
T Consensus       149 ~l~~~~~~l~iVDavss~g~~-----------~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~  217 (349)
T TIGR01364       149 ELPDVKNAPLVADMSSNILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKI  217 (349)
T ss_pred             eecccCCCeEEEEccccccCc-----------cCCHHHccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHH
Confidence            777789999999999997643           2333556899999999999887 888888888765432111       


Q ss_pred             ----ceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeec-C--CCC-CEEEEEecCCC
Q 011567          341 ----GYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS-N--PES-PIVFLILEKST  409 (483)
Q Consensus       341 ----~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~--~~~-~i~~l~l~~~~  409 (483)
                          ...+ .+.|-....+..++|+++.+   .+.+.++.+++.+++++.|++++|+.... +  ..+ .++.+.+++. 
T Consensus       218 ~~~~~~~~-~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~-  295 (349)
T TIGR01364       218 HAENDSMY-NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE-  295 (349)
T ss_pred             HHhcCCCC-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh-
Confidence                1111 23344555566688998864   25788889999999999999987664332 1  234 4566766431 


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                             ....++... +.+.|+.+.+...       ..+.+|+++...+|+||||+++++|+++.++
T Consensus       296 -------~~~~~~~~~-~~~~Gi~~~~~~~-------~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       296 -------ELEKRFLKE-AEERGLVSLKGHR-------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             -------hHhHHHHHH-HHHCCCcccCCcc-------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence                   112344443 4456995544322       1245999999999999999999999987653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.75  E-value=7.7e-16  Score=154.20  Aligned_cols=310  Identities=17%  Similarity=0.184  Sum_probs=192.7

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH-hhhcCCeEEEe-----------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYF-----------  220 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g-~~~s~~~v~~~-----------  220 (483)
                      .+-..+||+.+++++|.+.++.++||+.|+..+....+++||.|  ...+|+....+ +...|...+-+           
T Consensus        77 d~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~  154 (460)
T PRK13237         77 SRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSD  154 (460)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccccccC
Confidence            34467899999999999999999999999888777778999975  66667666555 66666644322           


Q ss_pred             ---cCC-CHHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCcc---ChHHHHHHHHHcCcEEEEeCcccccc---c
Q 011567          221 ---KHN-DMDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIA---PLDELIRLKEKYRFRVFLDESNSFGV---L  289 (483)
Q Consensus       221 ---~~~-d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~---~L~~l~~l~~k~~~~li~DEa~s~g~---l  289 (483)
                         +.| |++.|++.+++...      ..+++|.++- ++..+|..+   +++++.++|++||+.||.|.++.+|-   +
T Consensus       155 ~p~tgnlD~d~Le~~I~~~~~------~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI  228 (460)
T PRK13237        155 HPFKGNVDLDKLQALIDEVGA------ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFI  228 (460)
T ss_pred             CCCCCCcCHHHHHHHhccccC------CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhh
Confidence               222 88999998875321      1233333332 333346655   47999999999999999999998762   1


Q ss_pred             -----cCCCCccc----cccCCCCCceeEEEcccccccc-CCCceee-ccHHHHHHHHhcCCce-eecC--CCcH-HHHH
Q 011567          290 -----GRSGRGLT----EHCGVPVDKIDIVTAAMGHALA-TEGGFCT-GSARVVDHQRLSSSGY-VFSA--SLPP-YLAS  354 (483)
Q Consensus       290 -----g~~G~g~~----~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~-~~~~~~~~~~~~~~~~-~fs~--~~~p-~~~a  354 (483)
                           |..|+.+.    |.+    .-.|+++.|++|.++ ..||+++ .++++.+..+.....| .|.+  ++.. -..+
T Consensus       229 ~~re~~y~~~~i~ei~~e~~----s~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~a  304 (460)
T PRK13237        229 KEREEGYQDKSIKEIVHEMF----SYADGCTMSGKKDCLVNIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEA  304 (460)
T ss_pred             cccccccCCCcHhHHhhhcc----CcCcEEEEeCCCCCCCCCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHH
Confidence                 11122211    111    234899999999997 4478765 5677888776553222 1211  1211 1112


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567          355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV  434 (483)
Q Consensus       355 aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v  434 (483)
                      .|....+.++.  +..+..-++.++|.+.|.+. |+++..+.++.-+++....-......+.--.+.++.++..+.||-.
T Consensus       305 lAvgl~E~~~~--~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~  381 (460)
T PRK13237        305 MAIGIEESVQY--EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRS  381 (460)
T ss_pred             HHhHHHhhchH--HHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCe
Confidence            22222222222  46666667889999999885 9999877777777775432111111122234566666666677754


Q ss_pred             Eee------cccccccCCCC--CceEEEccC-CCCHHHHHHHHHHHHHHHHH
Q 011567          435 VTS------KRSMLDKCRLP--VGIRLFVSA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       435 ~~~------~~~~~~~~~~~--~~lRi~~~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      .-.      +.|.-.....+  .-+|++++- ..|.+++|.+++++..+.++
T Consensus       382 ~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        382 MERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             EeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence            311      11111111112  239997765 56999999999999887654

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.75  E-value=2.9e-16  Score=157.44  Aligned_cols=225  Identities=16%  Similarity=0.129  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH----hHhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ----NGLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~----~g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+||++++++.|.+.++.++||++|+..++.++.++||.|++....|+...    ..+...|.++..++.++.+.++
T Consensus        64 P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~  143 (384)
T PRK06434         64 PTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD  143 (384)
T ss_pred             hhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee
Confidence            667899999999999999999999999999999999999998888765444333    4455667888888765544443


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                        +.   .      .++++|++|.+.++++.++|+++|.++|++++  +++|.+++.+..++   .    .+   ...|+
T Consensus       144 --l~---~------~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~---p----l~---~gaDi  200 (384)
T PRK06434        144 --FD---P------SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQN---P----LD---LGADV  200 (384)
T ss_pred             --ec---C------CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCC---c----hh---cCCCE
Confidence              11   1      13789999999999999999999999999998  56799975443321   1    12   23499


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|.+|.+++    .||.++. ++++.+.++...  ..++..++|+.++.++..|+.+   +.++++.++++..+.+.|
T Consensus       201 vv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~--~~~G~~~~~~~A~l~~~gL~tL---~~R~~r~~~~a~~~a~~L  275 (384)
T PRK06434        201 VIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERR--KTLGSNPDPIQAYLALRGLKTL---GLRMEKHNKNGMELARFL  275 (384)
T ss_pred             EEeecccccCCCCCceEEEEecCcHHHHHHHHHHH--HhcCCCCCHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHH
Confidence            99999999963    2677755 555655554321  1234456788877776666655   457888899999999999


Q ss_pred             ccCCCce-eec----------CCCCCEEEEEec
Q 011567          385 SDIHGLS-IAS----------NPESPIVFLILE  406 (483)
Q Consensus       385 ~~~~~~~-i~~----------~~~~~i~~l~l~  406 (483)
                      ++.|.+. +.-          ...+.++.+.++
T Consensus       276 ~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~  308 (384)
T PRK06434        276 RDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR  308 (384)
T ss_pred             HcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence            8876543 211          124678888884

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.74  E-value=9.4e-16  Score=164.48  Aligned_cols=303  Identities=14%  Similarity=0.108  Sum_probs=188.2

Q ss_pred             cccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhh---hhhc-----cCCcEEEEcCCchhHHHhHhhhcCCeEEE
Q 011567          149 FYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAI---PCFC-----KKGDLIVADEGVHWGIQNGLYLSRSTVVY  219 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai---~~~~-----~~gdiI~~~~~~h~s~~~g~~~s~~~v~~  219 (483)
                      ..|+.+...++++.+++++|.+.+-++ ++|+.+..+++   +++.     ..+++|+++...|++....+...|.+++.
T Consensus       538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~  617 (954)
T PRK12566        538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVI  617 (954)
T ss_pred             hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEE
Confidence            456778889999999999999998888 58876665554   4431     23568889999997766667778899988


Q ss_pred             ecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          220 FKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       220 ~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                      ++.+     |+++|++.+++...       ++++|++..+.+.++...|+++|+++|+++|+++++|.++..+..+-   
T Consensus       618 Vp~D~~G~iDle~L~a~I~~~~~-------~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l---  687 (954)
T PRK12566        618 VECDPDGNVDLDDLKAKAAAAGD-------RLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGL---  687 (954)
T ss_pred             eccCCCCCcCHHHHHHHhhccCC-------CEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCC---
Confidence            8764     78899988865433       36666666555554555669999999999999999999997543321   


Q ss_pred             ccccccCCCCCceeEEEcccccccc-C--CC----ceeeccHHHHHHHHhcC----C---ceeecCC-CcHHHHHHHHHH
Q 011567          295 GLTEHCGVPVDKIDIVTAAMGHALA-T--EG----GFCTGSARVVDHQRLSS----S---GYVFSAS-LPPYLASAAITA  359 (483)
Q Consensus       295 g~~~~~~v~~~~~Di~~~s~~K~lg-~--~G----G~i~~~~~~~~~~~~~~----~---~~~fs~~-~~p~~~aaa~~a  359 (483)
                      .....     .++|+++++++|+|+ +  .|    |++..++.+...++...    .   +-.-..+ .+...+..+..+
T Consensus       688 ~~Pg~-----~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A  762 (954)
T PRK12566        688 ARPAD-----IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPIS  762 (954)
T ss_pred             CChhh-----cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHH
Confidence            00011     344999999999996 2  22    23333443433443211    0   0000111 111122223334


Q ss_pred             HHHHhc-CcHHHHHH----HHHHHHHHHhhccCCCceeecCCCCCE---EEEEecCCCCCchhhHHHHHHHHHHHHHhCC
Q 011567          360 IDVLEE-NPDLITKL----KKNTAILRTGLSDIHGLSIASNPESPI---VFLILEKSTGSMKNDLQLLEDIADWALKEDG  431 (483)
Q Consensus       360 l~~l~~-~~~~~~~l----~~~~~~l~~~L~~~~~~~i~~~~~~~i---~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~G  431 (483)
                      +.++.. ..+ ..+.    ..++.+++++|.+..++... ....++   +.+.+......   ......+++++++ ++|
T Consensus       763 ~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~-~~~~~~~hEfii~~~~l~~~---~g~~~~dvakRL~-d~G  836 (954)
T PRK12566        763 WMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLYR-GRNERVAHECILDLRPLKAQ---TGISEEDVAKRLM-DYG  836 (954)
T ss_pred             HHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcC-CCCCCeeeEEEEEccccccc---cCCCHHHHHHHHH-HCC
Confidence            444432 223 3333    45888999999764333332 112232   22222110000   0011246788766 679


Q ss_pred             EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +......+|.      ++.+|++++-..|++|||+++++++.+.+++
T Consensus       837 ihapt~~fPv------~~~LmIepTE~eskeEIDrf~eAL~~I~~e~  877 (954)
T PRK12566        837 FHAPTMSFPV------PGTLMVEPTESESKAELDRFVEAMLSIRAEI  877 (954)
T ss_pred             cEEeEEeecc------CCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence            9877654432      3569999999999999999999999988775

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.74  E-value=9.5e-16  Score=155.18  Aligned_cols=302  Identities=12%  Similarity=0.123  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHHHhhhCCC---CEEEecccH-HHHHhhhhhhcc---CCcEEEEcCCchhHHHhHhhhcCCeEEEecC---
Q 011567          153 IDVHLDCEARIAKFLGTP---DSILYSYGL-STMFSAIPCFCK---KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---  222 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e---~~i~~~sG~-~a~~~ai~~~~~---~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---  222 (483)
                      ..+..++++++++++|..   .++++++|+ .++..++.++..   ++|.|+++...|.++.+++...|.+++.++.   
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d  183 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLD  183 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeec
Confidence            357789999999999987   688889998 577777776652   5899999999999999999999998887762   


Q ss_pred             -----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc
Q 011567          223 -----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT  297 (483)
Q Consensus       223 -----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~  297 (483)
                           -|+++|++.+++...      +.+.+|+..+.+...|..+|+++|.++|++||+++|+|++|+.+..-  -+...
T Consensus       184 ~~~~~iD~e~Le~aIt~~~~------kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~--~~~~~  255 (444)
T TIGR03531       184 GDELTTDVEDIERAIEEIGP------DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK--YMELI  255 (444)
T ss_pred             CcCCCcCHHHHHHHHHhccC------CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChh--hhhhh
Confidence                 178899998875321      13555666555555578899999999999999999999999864211  00010


Q ss_pred             cccCCCCCceeEEEccccccccC-C-Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHH
Q 011567          298 EHCGVPVDKIDIVTAAMGHALAT-E-GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKL  373 (483)
Q Consensus       298 ~~~~v~~~~~Di~~~s~~K~lg~-~-GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l  373 (483)
                      + .+.....+|+++.|++|.+.. . ||+++. ++++++.++...   .......|.. .+....+..- +...+++++.
T Consensus       256 ~-~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y---~g~~~~s~~~-~~~~~ll~~G~~g~~~li~~~  330 (444)
T TIGR03531       256 N-KAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSY---PGRASASPSL-DVLITLLSLGSKGYLELLKER  330 (444)
T ss_pred             h-ccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhc---cCCCCChHHH-HHHHHHHHhCHHHHHHHHHHH
Confidence            0 112111358889999999974 3 355545 677777765432   1122222322 2222222211 2234677888


Q ss_pred             HHHHHHHHHhhccCC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE----EEeeccccc---
Q 011567          374 KKNTAILRTGLSDIH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVF----VVTSKRSML---  442 (483)
Q Consensus       374 ~~~~~~l~~~L~~~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~----v~~~~~~~~---  442 (483)
                      .++.+++.+.|+++.   |-.+...+..|| +.+.+....      ......+.. +|-.++|-    +.+.....+   
T Consensus       331 ~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~-~l~~~~v~g~r~v~~~~~~~~~~~  403 (444)
T TIGR03531       331 KEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGS-MLYSRRVTGPRVVTNGDSKTVGGC  403 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHH-HHHhCCCCCceeecCCCceEECCE
Confidence            888888888887652   555554445554 333443211      111223443 33334442    111110000   


Q ss_pred             --------ccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          443 --------DKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       443 --------~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                              ....+.+-|-++....+|++|||.+++.|+++
T Consensus       404 ~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       404 EFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             EeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence                    00011233666777789999999999999876

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.74  E-value=3.8e-17  Score=162.63  Aligned_cols=232  Identities=19%  Similarity=0.233  Sum_probs=155.4

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------  223 (483)
                      ..+..+.++..|+.+|.+++++..+|+ .+|.+++.+++++||.|++++.+|-|+..++.++|..+++++..        
T Consensus        65 ~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~  144 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIG  144 (417)
T ss_dssp             BTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BE
T ss_pred             ccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCcc
Confidence            347889999999999999999997776 77899999999999999999999999999999999988776432        


Q ss_pred             --CH-----HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcc
Q 011567          224 --DM-----DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL  296 (483)
Q Consensus       224 --d~-----~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~  296 (483)
                        +.     +.+++.+++....    +..+.++++.|.|.  |.+.++++|+++|++++..|++||+|+.- ++-. ...
T Consensus       145 ~i~~~~~~~~~i~~~l~~~p~~----k~~~~vvlt~PTY~--Gv~~di~~I~~~~h~~~~~llvDEAhGah-~~F~-~lp  216 (417)
T PF01276_consen  145 GISPDEFNEEDIEEALKEHPDA----KAPRLVVLTSPTYY--GVCYDIKEIAEICHKHGIPLLVDEAHGAH-FGFH-PLP  216 (417)
T ss_dssp             EB-GGGGSHHHHHHHHHHCTTC----HCESEEEEESS-TT--SEEE-HHHHHHHHCCTECEEEEE-TT-TT-GGCS-GGG
T ss_pred             CCChhhhhHHHHHHHHHhCccc----cCceEEEEeCCCCC--eEEECHHHHHHHhcccCCEEEEEcccccc-ccCC-CCc
Confidence              34     7788888776542    00233788888775  99999999999999999999999999632 2211 111


Q ss_pred             ccccCCCC----CceeEEEcccccccc--CCCceeeccHHH-H--HHHHhcCCceeecCCCcHHHHHHHHHHHHHH-h-c
Q 011567          297 TEHCGVPV----DKIDIVTAAMGHALA--TEGGFCTGSARV-V--DHQRLSSSGYVFSASLPPYLASAAITAIDVL-E-E  365 (483)
Q Consensus       297 ~~~~~v~~----~~~Di~~~s~~K~lg--~~GG~i~~~~~~-~--~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~-~  365 (483)
                      .....+..    +..++++.|.+|.++  +.++++-.+..- +  +.++.. .....|+|++-..++..-.+.+++ . +
T Consensus       217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~-l~~~~TTSPSY~lmASlD~a~~~m~~~~  295 (417)
T PF01276_consen  217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA-LSMHQTTSPSYPLMASLDVARAQMEEEE  295 (417)
T ss_dssp             TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH-HHHHS-SS--HHHHHHHHHHHHHHSHHH
T ss_pred             cchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhh
Confidence            11122211    223399999999998  345665332221 2  222221 122234555556666666777777 2 3


Q ss_pred             CcHHHHHHHHHHHHHHHhh---ccCCCceee
Q 011567          366 NPDLITKLKKNTAILRTGL---SDIHGLSIA  393 (483)
Q Consensus       366 ~~~~~~~l~~~~~~l~~~L---~~~~~~~i~  393 (483)
                      ..++.++..+++..+|+.+   +++.++.+.
T Consensus       296 G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~  326 (417)
T PF01276_consen  296 GRELLEEAIELAEEFRKKINRLNDIWGFKVL  326 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCT-SSEES
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Confidence            4568888889999999998   566555543

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.73  E-value=1.6e-15  Score=151.81  Aligned_cols=310  Identities=14%  Similarity=0.079  Sum_probs=198.1

Q ss_pred             CChHHHHHHHHHHHhcC-CCCCCCCCcccCh---HHHHHHHHHHHhhhCC-C--CEEEe-cccHHHHHhhhhhhccCCcE
Q 011567          124 GHEKLLESCTSALEKYG-VGSCGPRGFYGTI---DVHLDCEARIAKFLGT-P--DSILY-SYGLSTMFSAIPCFCKKGDL  195 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~---~~~~~l~~~La~~~g~-e--~~i~~-~sG~~a~~~ai~~~~~~gdi  195 (483)
                      -++++.+|+...+..++ .+.+.+....-..   +...+..+.|+++++. +  +++++ ++|+.++++++..+..+++.
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~   93 (360)
T PRK05355         14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKK   93 (360)
T ss_pred             CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCe
Confidence            35789999888876542 1111111111122   6788999999999996 2  24455 78889999998888877653


Q ss_pred             EE-EcCCchhH-HHhHhhhcCCeE-EEec--C--CCHHHHHH-HHHHhhhhhhhccCccEEEEEecccCCCCCcc-ChHH
Q 011567          196 IV-ADEGVHWG-IQNGLYLSRSTV-VYFK--H--NDMDSLRN-TLERVTADNKRAKKLRRYIVVEAVYQNSGQIA-PLDE  266 (483)
Q Consensus       196 I~-~~~~~h~s-~~~g~~~s~~~v-~~~~--~--~d~~~Le~-~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~-~L~~  266 (483)
                      ++ +..+.++. ..+-++..|... ...+  .  .+..++++ .+++          ..++|.+.+.-+.+|.+. |+++
T Consensus        94 ~l~i~~G~fg~r~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~l~~----------~~~~V~~th~eTstGv~~~~i~~  163 (360)
T PRK05355         94 ADYVDTGSWSKKAIKEAKKYGEVNVAASSEDDGFTYIPPLDEWQLSD----------DAAYVHYTSNETIDGTEFHELPD  163 (360)
T ss_pred             EEEEECCHHHHHHHHHHHHhCCceEEecccccCCCCCCChhhccCCC----------CCCEEEEccCCCcceEecCcccc
Confidence            32 33333322 233444445432 1212  1  12334444 3321          256787777777889997 6776


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhc-C-----
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS-S-----  339 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~-~-----  339 (483)
                      |      ||+++++|.++++|..           .++.++.|++++|..|++|+.| |+++.+++..+.+... .     
T Consensus       164 i------~g~l~vVDavss~g~~-----------~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~  226 (360)
T PRK05355        164 T------GDVPLVADMSSDILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDY  226 (360)
T ss_pred             c------CCCcEEEEcCccccCc-----------cCCHHHccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHH
Confidence            6      8999999999997643           2333556899999999999887 8888888887765431 1     


Q ss_pred             -----CceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecC--CCC-CEEEEEecCC
Q 011567          340 -----SGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASN--PES-PIVFLILEKS  408 (483)
Q Consensus       340 -----~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~-~i~~l~l~~~  408 (483)
                           ....+ .+.|-..+.+..++|+++.+.   +.+.++.+++.+++++.|++++.+....+  ..+ .++.+.+++.
T Consensus       227 ~~~~~~~~~~-~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~  305 (360)
T PRK05355        227 KTHADNDSMY-NTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE  305 (360)
T ss_pred             HHHHhcCCcc-CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh
Confidence                 01111 234555566666889988653   47888999999999999999743222111  245 4577776431


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                              ....++...+ .++|+.+.....       ..+.+|+++...+|++||++++++|+++++.
T Consensus       306 --------~~~~~~~~~~-~~~Gi~~~~~~~-------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        306 --------ELDKKFLAEA-KAAGLVGLKGHR-------SVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             --------HHHHHHHHHH-HHCCCcccCCCC-------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                    1123444443 456998743321       1245999999999999999999999997653

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.72  E-value=1.6e-15  Score=166.54  Aligned_cols=304  Identities=17%  Similarity=0.150  Sum_probs=186.0

Q ss_pred             ccChHHHHHHHHHHHhhhCCCCEEEec-ccHHHHHh---hhhhh-ccCC----cEEEEcCCchhHHHhHhhhcCCeEEEe
Q 011567          150 YGTIDVHLDCEARIAKFLGTPDSILYS-YGLSTMFS---AIPCF-CKKG----DLIVADEGVHWGIQNGLYLSRSTVVYF  220 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g~e~~i~~~-sG~~a~~~---ai~~~-~~~g----diI~~~~~~h~s~~~g~~~s~~~v~~~  220 (483)
                      -|+.+...++++.|++++|.+.+-++. +|++++.+   +++.+ .++|    ++|++++..|++....+...|.+++.+
T Consensus       538 qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v  617 (954)
T PRK05367        538 AGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVV  617 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEE
Confidence            345577889999999999999877774 55555533   34443 2344    479999999999999999999999888


Q ss_pred             cCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC-ccChHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          221 KHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ-IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       221 ~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~-i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                      +.+     |+++|++.+++...       ++++|++...... |. ..|+++|+++|+++|+++++|.++..+.++-.-.
T Consensus       618 ~~d~~G~iD~~~L~~~i~~~~~-------~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p  689 (954)
T PRK05367        618 ACDENGNIDLDDLRAKAEEHAD-------NLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARP  689 (954)
T ss_pred             CCCCCCCcCHHHHHHHHhccCC-------CeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCCh
Confidence            753     67888887765322       2455544444333 55 4789999999999999999999997664442100


Q ss_pred             ccccccCCCCCceeEEEcccccccc-CCC------ceeeccHHHHHHHHhcCCce-ee----cC-CCcHH-HHHHHHHHH
Q 011567          295 GLTEHCGVPVDKIDIVTAAMGHALA-TEG------GFCTGSARVVDHQRLSSSGY-VF----SA-SLPPY-LASAAITAI  360 (483)
Q Consensus       295 g~~~~~~v~~~~~Di~~~s~~K~lg-~~G------G~i~~~~~~~~~~~~~~~~~-~f----s~-~~~p~-~~aaa~~al  360 (483)
                         ..     ..+|+++++++|+|+ +.|      |++..++.+...+.....+. .+    +. ...+. .+..+..+.
T Consensus       690 ---g~-----~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~  761 (954)
T PRK05367        690 ---GD-----IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISW  761 (954)
T ss_pred             ---hh-----cCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHH
Confidence               11     235999999999996 211      46655554443332111000 00    00 01122 222233344


Q ss_pred             HHHhc-C-cHHHHH---HHHHHHHHHHhhccCCCceeecCCCCC---EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCE
Q 011567          361 DVLEE-N-PDLITK---LKKNTAILRTGLSDIHGLSIASNPESP---IVFLILEKSTGSMKNDLQLLEDIADWALKEDGV  432 (483)
Q Consensus       361 ~~l~~-~-~~~~~~---l~~~~~~l~~~L~~~~~~~i~~~~~~~---i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv  432 (483)
                      .++.. . +.+.+.   ...++.++.++|++...+...++ ..+   -+.+.+.....   .......++++++ .+.|+
T Consensus       762 ~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~-~~~~~~e~i~~~~~~~~---~~g~~~~di~krL-~d~G~  836 (954)
T PRK05367        762 MYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGA-NGRVAHECILDLRPLKE---STGITVDDIAKRL-IDYGF  836 (954)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCC-CCCcccceEEEeecccc---cCCCCHHHHHHHH-HHCCC
Confidence            44332 1 223333   33788999999976423322221 112   12222211000   0001235678875 45699


Q ss_pred             EEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          433 FVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       433 ~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ......++.      ++.++|+++-..|++|||+++++++.+..++-.
T Consensus       837 ~~~t~~~pv------~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        837 HAPTMSFPV------AGTLMVEPTESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             eEeecCCcc------CCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence            876644432      355999999999999999999999998877643

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.71  E-value=4.3e-15  Score=160.48  Aligned_cols=303  Identities=15%  Similarity=0.133  Sum_probs=194.1

Q ss_pred             cccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHh---hhhhhc-----cCCcEEEEcCCchhHHHhHhhhcCCeEEE
Q 011567          149 FYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFS---AIPCFC-----KKGDLIVADEGVHWGIQNGLYLSRSTVVY  219 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~---ai~~~~-----~~gdiI~~~~~~h~s~~~g~~~s~~~v~~  219 (483)
                      .-|+.+...++++.|++++|.+.+-++ ++|+.+..+   +++.+.     .+.++|+++...|++....+...|.+++.
T Consensus       525 sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~  604 (939)
T TIGR00461       525 VEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVP  604 (939)
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEE
Confidence            445667889999999999999976666 666665544   445432     24568999999999988888888999988


Q ss_pred             ecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          220 FKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       220 ~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                      ++.+     |+++|++.+++...       ++++|++....+ .|.+.| +++|.++|+++|.++++|.++..+..+.  
T Consensus       605 V~~d~~G~iDle~L~~~i~~~~~-------~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l--  674 (939)
T TIGR00461       605 VNCDQDGNIDLVDLKNKAEQHGD-------ELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGL--  674 (939)
T ss_pred             eccCCCCCcCHHHHHHHHhhcCC-------ceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCC--
Confidence            8763     78999998876333       266666665554 588877 9999999999999999999996543221  


Q ss_pred             CccccccCCCCCceeEEEcccccccc-C-----CC-ceeeccHHHHHHHHhcCC-------------ceeec-CCCcHHH
Q 011567          294 RGLTEHCGVPVDKIDIVTAAMGHALA-T-----EG-GFCTGSARVVDHQRLSSS-------------GYVFS-ASLPPYL  352 (483)
Q Consensus       294 ~g~~~~~~v~~~~~Di~~~s~~K~lg-~-----~G-G~i~~~~~~~~~~~~~~~-------------~~~fs-~~~~p~~  352 (483)
                         ..   ....++|++++|.+|+|+ +     +| |+++.++.+...+.....             +-+-+ ...+...
T Consensus       675 ---~~---Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~  748 (939)
T TIGR00461       675 ---TS---PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASI  748 (939)
T ss_pred             ---CC---ccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHH
Confidence               11   011345999999999886 1     11 677776654433321100             00111 0122233


Q ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCE---EEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          353 ASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPI---VFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       353 ~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~i---~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                      +..+...+..+-.+  .+..+....++.|+.++|++  ++++..+. .+++   +.+.+...   .........++++++
T Consensus       749 ~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~---~~~~g~~~~dIakrL  823 (939)
T TIGR00461       749 LPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL---KAKTGIEAIDVAKRL  823 (939)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch---hhhcCCCHHHHHHHH
Confidence            33333344444221  23455566688999999976  45554332 2333   33333211   011112356788886


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ++ +|+......+|.      ++.+-|+++-..|++|||++++++.++.+++-
T Consensus       824 ~d-~G~hapt~~~pv------~g~lmiepTE~eskeelD~f~~al~~I~~e~~  869 (939)
T TIGR00461       824 QD-YGFHAPTLSFPV------PGTLMVEPTESESLEELDRFCDAMIAIKEEIN  869 (939)
T ss_pred             Hh-CCeeccccCCcc------CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence            65 588765544432      23467788889999999999999988876654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.69  E-value=1.2e-14  Score=153.27  Aligned_cols=304  Identities=14%  Similarity=0.165  Sum_probs=195.0

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------  223 (483)
                      ..+..+.++..|+.+|.+++.+..+|+ .+|.+++.+.+++||.|++++.+|-|+..++.++|++.+++...        
T Consensus       194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g  273 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG  273 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCcc
Confidence            347789999999999999999887775 77889999999999999999999999999999999988876421        


Q ss_pred             --C-----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCCCCc
Q 011567          224 --D-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRSGRG  295 (483)
Q Consensus       224 --d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~G~g  295 (483)
                        +     .+.+++.+++....    +.++++|++.|.|-  |.+.++++|+++|+.++  +++||+|+.-. +.+--++
T Consensus       274 ~I~~~~~~~e~i~~~i~~~p~a----k~p~~~vit~pTYd--G~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~  345 (714)
T PRK15400        274 GIPQSEFQHATIAKRVKETPNA----TWPVHAVITNSTYD--GLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG  345 (714)
T ss_pred             CCCccccCHHHHHHHHHhCccc----cCccEEEEECCCCc--cEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCC
Confidence              2     67888888765421    12346888888774  99999999999999887  68999986421 2211011


Q ss_pred             ccc-ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhc-CCceeecCCCcHHHHHHHHHHHHHHhc--CcHH
Q 011567          296 LTE-HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLS-SSGYVFSASLPPYLASAAITAIDVLEE--NPDL  369 (483)
Q Consensus       296 ~~~-~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~-~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~  369 (483)
                      ... ..+-++++..+++.|.+|.+++  .+.++-.+.. +++-+.+ .....-|+|.+-..+|..-.+..+++.  ..++
T Consensus       346 ~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l  424 (714)
T PRK15400        346 KCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRL  424 (714)
T ss_pred             cChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence            111 1222222223899999999973  2333311111 1211111 111122344444455555566677763  4578


Q ss_pred             HHHHHHHHHHHHHhhccCCC------ceeecCC----------------------------CCCEEEEE-ecC--CCCCc
Q 011567          370 ITKLKKNTAILRTGLSDIHG------LSIASNP----------------------------ESPIVFLI-LEK--STGSM  412 (483)
Q Consensus       370 ~~~l~~~~~~l~~~L~~~~~------~~i~~~~----------------------------~~~i~~l~-l~~--~~~~~  412 (483)
                      +++..+.+..+++.|.++++      +.+..+.                            -.|+.... .+.  ..+..
T Consensus       425 ~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~  504 (714)
T PRK15400        425 INGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTM  504 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccc
Confidence            88888899999999987765      4443211                            02221111 111  00100


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      . +......++.+.|+++||.+.....         ..+=+.++...|+++++.++++|.++-
T Consensus       505 ~-~~Gipg~~v~~~L~e~gI~~E~~d~---------~~iLfl~s~g~t~~~~~~L~~aL~~f~  557 (714)
T PRK15400        505 S-DFGIPASIVAKYLDEHGIVVEKTGP---------YNLLFLFSIGIDKTKALSLLRALTDFK  557 (714)
T ss_pred             c-ccCCCHHHHHHHHHHcCCEEEecCC---------CeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            0 0111122344456778998876533         226678888999999999999998763

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.68  E-value=5.4e-15  Score=148.17  Aligned_cols=285  Identities=13%  Similarity=0.080  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh-hh--cCCeEEEecCCCHH
Q 011567          154 DVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL-YL--SRSTVVYFKHNDMD  226 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~-~~--s~~~v~~~~~~d~~  226 (483)
                      +...+.++.++++++.+   +++++ +||+.++..++..+..++ .+++..+.|++-+... ..  ...++..++....+
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~~-~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEKK-SLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGS  119 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccccc-ccEEecCHHHHHHHHHHHhhhccCCceEEecCCCC
Confidence            57788999999999973   24454 568999999988876433 3333334444322221 11  11234444322112


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCc
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK  306 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~  306 (483)
                      .++..+   .       ..+++|.+.+.-+.+|.+.|+++|   +++||+++++|.++++|...         .++  ++
T Consensus       120 ~~~~~~---~-------~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~---------idv--~~  175 (361)
T TIGR01366       120 APEPQA---D-------PGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLP---------VDI--AE  175 (361)
T ss_pred             CCCCcc---C-------CCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCC---------CCH--HH
Confidence            222211   1       137889898998899999999887   58899999999999976431         233  34


Q ss_pred             eeEEEccccccccCCCcee--eccHHHHHHHHhcCCc------ee------------ecCC-CcHHHHHHHHHHHHHHhc
Q 011567          307 IDIVTAAMGHALATEGGFC--TGSARVVDHQRLSSSG------YV------------FSAS-LPPYLASAAITAIDVLEE  365 (483)
Q Consensus       307 ~Di~~~s~~K~lg~~GG~i--~~~~~~~~~~~~~~~~------~~------------fs~~-~~p~~~aaa~~al~~l~~  365 (483)
                      +|++++|..|++|+.||+.  +.+++..+.+.....+      |.            .+.+ .+.....+..++++++++
T Consensus       176 ~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~  255 (361)
T TIGR01366       176 TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNG  255 (361)
T ss_pred             CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence            7999999999999776643  4477766655421100      10            1112 233334466678888864


Q ss_pred             C---cHHHHHHHHHHHHHHHhhccCCCceeec-CC--CCCEEE-EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          366 N---PDLITKLKKNTAILRTGLSDIHGLSIAS-NP--ESPIVF-LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       366 ~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~--~~~i~~-l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .   +...++.+++.+++++.|.+..++.+.. ..  .++.+. +.+.  .+.      ...++.+. |+++||.+....
T Consensus       256 ~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~--~g~------~~~~v~~~-L~~~gI~i~~~~  326 (361)
T TIGR01366       256 NGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV--DDI------DAATVAKI-LRANGIVDTEPY  326 (361)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC--Ccc------CHHHHHHH-HHHCCCeeccCc
Confidence            3   3566888999999999999875554432 11  244322 3332  111      12345554 456699886532


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .. +.    ...+|+++...+|++||++++++|++++++
T Consensus       327 ~~-l~----~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       327 RK-LG----RNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             cc-cC----CCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence            11 11    234999999999999999999999998765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.68  E-value=1.9e-14  Score=136.53  Aligned_cols=213  Identities=17%  Similarity=0.192  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++|+.+=|--.++.++||.+|+..++..+++.||.|+....-++....    .++..|.++..++.+|++.++
T Consensus        62 PT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~  141 (426)
T COG2873          62 PTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFE  141 (426)
T ss_pred             chHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHH
Confidence            4567899999999998889999999999999999999999999887776665543    345668899999999999999


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|.+|.+-|+.+.+.+++.|.++|+++|+.+|+|.+.+...+-       .-+.   ...||
T Consensus       142 ~aI~~----------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~-------rP~~---hGADI  201 (426)
T COG2873         142 AAIDE----------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLC-------RPIE---HGADI  201 (426)
T ss_pred             HHhCc----------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceec-------chhh---cCCCE
Confidence            88866          4899999999999999999999999999999999999987643332       1122   33499


Q ss_pred             EEcccccccc----CCCceee--ccHHHHH--HH------HhcCCcee---------------------ecCCCcHHHHH
Q 011567          310 VTAAMGHALA----TEGGFCT--GSARVVD--HQ------RLSSSGYV---------------------FSASLPPYLAS  354 (483)
Q Consensus       310 ~~~s~~K~lg----~~GG~i~--~~~~~~~--~~------~~~~~~~~---------------------fs~~~~p~~~a  354 (483)
                      ++.|++|.+|    +.||.++  |+-++..  .+      ...-++..                     ++++++|+.+-
T Consensus       202 VvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAf  281 (426)
T COG2873         202 VVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAF  281 (426)
T ss_pred             EEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHH
Confidence            9999999997    3457664  2212210  00      00011111                     22334555544


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC
Q 011567          355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       355 aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      ..+..++-+   .-+.++.-+|+..+.+.|++.|.
T Consensus       282 l~lqGlETL---~LRmerH~~NA~~vA~~L~~Hpk  313 (426)
T COG2873         282 LLLQGLETL---SLRMERHCENALKVAEFLENHPK  313 (426)
T ss_pred             HHHhchhhh---HHHHHHHHHhHHHHHHHHhcCCC
Confidence            444444333   23567777888888888887664

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.68  E-value=1.5e-14  Score=152.75  Aligned_cols=311  Identities=17%  Similarity=0.144  Sum_probs=190.2

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhH-hhhcCCeEEEecCC-------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYFKHN-------  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g-~~~s~~~v~~~~~~-------  223 (483)
                      ..+..+.++..|+.+|.+++.+..+|+ .+|.+++.+.+++||.|++++.+|-|+..| +.++|+..+++...       
T Consensus       173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~  252 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFI  252 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCc
Confidence            347789999999999999998886665 778899999999999999999999999996 99999988776421       


Q ss_pred             ---C-----HHHHHHHHHHhhhhhhhccCc-cEEEEEecccCCCCCccChHHHHHH-HHHcCcEEEEeCccccc-cccCC
Q 011567          224 ---D-----MDSLRNTLERVTADNKRAKKL-RRYIVVEAVYQNSGQIAPLDELIRL-KEKYRFRVFLDESNSFG-VLGRS  292 (483)
Q Consensus       224 ---d-----~~~Le~~l~~~~~~~~~~~~~-~~~iv~e~v~~~~G~i~~L~~l~~l-~~k~~~~li~DEa~s~g-~lg~~  292 (483)
                         +     .+.+++.+++...+..+.+++ +.+|++.|.|-  |.+.++++|+++ |++++ .|++||+|+.- .+.+-
T Consensus       253 g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYd--G~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~  329 (720)
T PRK13578        253 GGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYD--GTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM  329 (720)
T ss_pred             CCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCc--ceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence               2     345888887652211111222 56778877774  999999999998 78888 99999999642 12221


Q ss_pred             CCccccc-cCCCC-CceeEEEcccccccc--CCCceeeccHHH-------HHHHHhcCCceee-cCCCcHHHHHHHHHHH
Q 011567          293 GRGLTEH-CGVPV-DKIDIVTAAMGHALA--TEGGFCTGSARV-------VDHQRLSSSGYVF-SASLPPYLASAAITAI  360 (483)
Q Consensus       293 G~g~~~~-~~v~~-~~~Di~~~s~~K~lg--~~GG~i~~~~~~-------~~~~~~~~~~~~f-s~~~~p~~~aaa~~al  360 (483)
                      -+++... ....+ +..++++-|.+|.++  +.+.++-.+...       +++-+.+..-..+ |+|.+-..+|..-.+-
T Consensus       330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~  409 (720)
T PRK13578        330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNA  409 (720)
T ss_pred             cccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            1122111 11112 112389999999997  334554222211       1121111111123 3343333444444445


Q ss_pred             HHHhc--CcHHHHHHHHHHHHHHHhh-ccCCCceeecCC----------------------------C------------
Q 011567          361 DVLEE--NPDLITKLKKNTAILRTGL-SDIHGLSIASNP----------------------------E------------  397 (483)
Q Consensus       361 ~~l~~--~~~~~~~l~~~~~~l~~~L-~~~~~~~i~~~~----------------------------~------------  397 (483)
                      .+++.  ..++++...+.+..+|+.| +.++++.+..+.                            .            
T Consensus       410 ~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~  489 (720)
T PRK13578        410 KMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQY  489 (720)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCcccccccccccccc
Confidence            55553  4567888888888898888 555555443110                            0            


Q ss_pred             --CCEEE-EEecCC---CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          398 --SPIVF-LILEKS---TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       398 --~~i~~-l~l~~~---~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                        .|+.. +....-   .+......--...+.+ .|.++||.+......         .+-+.++...|++++++++++|
T Consensus       490 ~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~-~L~e~gI~~E~~d~~---------~vL~l~s~g~t~~~~~~Lv~aL  559 (720)
T PRK13578        490 FVDPCKLLLTTPGIDAETGEYEDFGIPATILAN-YLRENGIVPEKCDLN---------SILFLLTPAEDMAKLQQLVAML  559 (720)
T ss_pred             ccCCceEEEEcCCcCcccccccccCccHHHHHH-HHHHcCCEEEecCCC---------eEEEEeCCCCCHHHHHHHHHHH
Confidence              12111 111100   0100000000223444 565559988765332         2557778889999999999999


Q ss_pred             HHHHH
Q 011567          472 KRISA  476 (483)
Q Consensus       472 ~~~~~  476 (483)
                      .++-+
T Consensus       560 ~~f~~  564 (720)
T PRK13578        560 ARFEK  564 (720)
T ss_pred             HHHHH
Confidence            87743

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.68  E-value=1.6e-14  Score=144.74  Aligned_cols=244  Identities=19%  Similarity=0.242  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHhhhCCC---------CEEEecccHHHHHhhhhhhc----------c----CCcEEEEcCCchhHHHhHh
Q 011567          154 DVHLDCEARIAKFLGTP---------DSILYSYGLSTMFSAIPCFC----------K----KGDLIVADEGVHWGIQNGL  210 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e---------~~i~~~sG~~a~~~ai~~~~----------~----~gdiI~~~~~~h~s~~~g~  210 (483)
                      ....++-+.+++++|.+         ..++.++|+++|..++.+..          +    +.-+|++.+..|+|+.+++
T Consensus        79 ~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa  158 (373)
T PF00282_consen   79 EIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAA  158 (373)
T ss_dssp             HHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHH
T ss_pred             cchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhc
Confidence            45566667777888865         36788999999987764331          1    2247888999999999999


Q ss_pred             hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccc
Q 011567          211 YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS  285 (483)
Q Consensus       211 ~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s  285 (483)
                      ...|..++.++.+     |+++|++.+++...+    +....+|+...-...+|.+.|+++|+++|++|++|+++|.+++
T Consensus       159 ~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~----g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~g  234 (373)
T PF00282_consen  159 RILGLGVRKIPTDEDGRMDIEALEKALEKDIAN----GKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYG  234 (373)
T ss_dssp             HHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT----TEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTG
T ss_pred             ceeeeEEEEecCCcchhhhHHHhhhhhcccccc----cccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccc
Confidence            9999888877654     688999998775543    1123355555556678999999999999999999999999998


Q ss_pred             ccc-ccCCCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceee-----------------
Q 011567          286 FGV-LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVF-----------------  344 (483)
Q Consensus       286 ~g~-lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~f-----------------  344 (483)
                      +.. +-+..+..  ..++  +.+|-++.+.+|.++.+   |-+++.++............|.+                 
T Consensus       235 g~~~~~~~~~~~--~~gi--~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl  310 (373)
T PF00282_consen  235 GSALLSPEYRHL--LFGI--ERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTL  310 (373)
T ss_dssp             GGGGGHCTTGGG--GTTG--GGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSS
T ss_pred             cccccccccccc--cccc--ccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccc
Confidence            633 22322221  2344  56788899999999833   33445555544332111111111                 


Q ss_pred             cCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          345 SASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ..+- ...+..+..+++.+-  ...+.+++..+++++|.+.|++.+++++..++..++++++++
T Consensus       311 ~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k  373 (373)
T PF00282_consen  311 QGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK  373 (373)
T ss_dssp             SSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred             cccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence            1121 334444445555443  224678888899999999999998899988889999999873

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.67  E-value=1.1e-15  Score=136.11  Aligned_cols=160  Identities=21%  Similarity=0.288  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhhh--CCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHH-hHhhhcCCeEEEecCCCHH----HH
Q 011567          156 HLDCEARIAKFL--GTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ-NGLYLSRSTVVYFKHNDMD----SL  228 (483)
Q Consensus       156 ~~~l~~~La~~~--g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~-~g~~~s~~~v~~~~~~d~~----~L  228 (483)
                      +.++++.+++++  +.+.++++++|++|+..+++++.++++.|++....|.+.. ..+...+.++..++.++..    ++
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~   81 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV   81 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchhh
Confidence            468999999999  8888999999999999999999888898888888887777 7778889998888765321    11


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      +.+.+..      ...+++++++++.++++|...|+++|+++|+++|+++|+|++++.+..+..+      .+.....+|
T Consensus        82 ~~~~~~~------~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~~~~~~~~d  149 (170)
T cd01494          82 AILEELK------AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG------VLIPEGGAD  149 (170)
T ss_pred             hhhhhcc------ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccc------cccccccCC
Confidence            1211111      1125789999999999999999999999999999999999999877654211      122224569


Q ss_pred             EEEccccccccCC-Cceeec
Q 011567          309 IVTAAMGHALATE-GGFCTG  327 (483)
Q Consensus       309 i~~~s~~K~lg~~-GG~i~~  327 (483)
                      +++.|++|.+++. +|+++.
T Consensus       150 ~~~~s~~K~~~~~~~G~l~~  169 (170)
T cd01494         150 VVTFSLHKNLGGEGGGVVIV  169 (170)
T ss_pred             EEEEEcccccCCCceEEEEe
Confidence            9999999999854 477764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.67  E-value=4.7e-16  Score=149.84  Aligned_cols=258  Identities=18%  Similarity=0.231  Sum_probs=170.2

Q ss_pred             EeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccC
Q 011567          113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK  192 (483)
Q Consensus       113 d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~  192 (483)
                      ||.|-+     ++|++.+++.++..       |.. .||..+...+|++++++++|.+.++++.+|+.||..+++++++|
T Consensus         1 Df~SD~-----~~~~m~~a~~~a~~-------gd~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~   67 (290)
T PF01212_consen    1 DFRSDT-----PTPAMLEAMAAANV-------GDD-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRP   67 (290)
T ss_dssp             EES-SS-----S-HHEEHHHHHTTS-------B-C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHT
T ss_pred             CCCccC-----CCHHHHHHHHcccc-------CCc-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhc
Confidence            555544     56888888844332       122 48888999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCchhHHHh--Hh-hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CCCccC
Q 011567          193 GDLIVADEGVHWGIQN--GL-YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAP  263 (483)
Q Consensus       193 gdiI~~~~~~h~s~~~--g~-~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G~i~~  263 (483)
                      ++.|++....|.....  +. .++|.+++.++..     |+++|++.++.....    ..++++|.+|...+. +|.+.+
T Consensus        68 ~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h----~~~~~~v~le~t~~~~GG~~~s  143 (290)
T PF01212_consen   68 GESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAH----HPQPAVVSLENTTELAGGTVYS  143 (290)
T ss_dssp             TEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGT----SGGEEEEEEESSBTTTTSB---
T ss_pred             CCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhcccc----CCCccEEEEEecCcCCCCeeCC
Confidence            9999999999876543  33 5688888877643     689999999875431    114778888876654 577776


Q ss_pred             ---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHHHh--
Q 011567          264 ---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQRL--  337 (483)
Q Consensus       264 ---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~~~--  337 (483)
                         |++|.++|++||+.+++|.+.-+-.....|..+.+..    ..+|++..|++|.+|. .|++++++++.++..+.  
T Consensus       144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~----~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~  219 (290)
T PF01212_consen  144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA----AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQR  219 (290)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH----TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh----hhCCEEEEEEEcccccccceEEEechHHHHHHHHHH
Confidence               7888999999999999999852211111112222333    3458999999999985 56788999986654321  


Q ss_pred             -cCCceeecCCCcHHHHH---HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          338 -SSSGYVFSASLPPYLAS---AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       338 -~~~~~~fs~~~~p~~~a---aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                       ...+-....+   +.++   -...++..++.......+..++++.+.+.|+.+ +..+..+
T Consensus       220 k~~gg~~~~~G---~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~-~~~~~~~  277 (290)
T PF01212_consen  220 KRLGGGMRQAG---VLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEAL-GGVLPRP  277 (290)
T ss_dssp             HHHTHHHHHTT---HHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEE-CEEEETT
T ss_pred             HHhccCeeecc---eeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHC-CCcccCC
Confidence             1111111111   1122   011233334444456777788899999999887 5444433

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.67  E-value=3.4e-14  Score=149.81  Aligned_cols=303  Identities=16%  Similarity=0.162  Sum_probs=191.2

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------  223 (483)
                      ..+..+.++..|+.+|.+++.+..+|+ .+|.+++.+.+++||.|++++.+|-|+..++.++|+..+++...        
T Consensus       194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g  273 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILG  273 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcC
Confidence            347789999999999999999887775 77889999999999999999999999999999999988876421        


Q ss_pred             --CH-----HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE-EEeCcccccc-ccCCCC
Q 011567          224 --DM-----DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV-FLDESNSFGV-LGRSGR  294 (483)
Q Consensus       224 --d~-----~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l-i~DEa~s~g~-lg~~G~  294 (483)
                        +.     +.+++.+++....    ++++++|++.|.|-  |.+.++++|.++|   |+.+ ++||+|+.-. +.+--+
T Consensus       274 ~I~~~~~~~e~I~~~i~~~p~~----~~p~~vvit~pTYd--Gi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~  344 (713)
T PRK15399        274 GIPRREFTRDSIEEKVAATTQA----QWPVHAVITNSTYD--GLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQ  344 (713)
T ss_pred             CCChhhccHHHHHHHHHhCCCc----CCceEEEEECCCCC--ceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccC
Confidence              23     7788888765421    22357888888764  9999999999999   5666 6999996421 221011


Q ss_pred             ccccccCC-CCCceeEEEcccccccc--CCCceeeccHHHHHHHHhc-CCceeecCCCcHHHHHHHHHHHHHHhc--CcH
Q 011567          295 GLTEHCGV-PVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLS-SSGYVFSASLPPYLASAAITAIDVLEE--NPD  368 (483)
Q Consensus       295 g~~~~~~v-~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~-~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~  368 (483)
                      +.....+. .++.+.+++.|.||.++  +.+.++-.+.. +++-+.+ ......|+|.+-..+|..-.+.++++.  ..+
T Consensus       345 ~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~  423 (713)
T PRK15399        345 GKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-YDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKR  423 (713)
T ss_pred             CcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-CCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence            11111111 22333444899999997  33455422222 2221111 111222344444455555566666763  456


Q ss_pred             HHHHHHHHHHHHHHhhccCCC------ceeecCC----------------------------CCCEEEE-EecC--CCCC
Q 011567          369 LITKLKKNTAILRTGLSDIHG------LSIASNP----------------------------ESPIVFL-ILEK--STGS  411 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~~~------~~i~~~~----------------------------~~~i~~l-~l~~--~~~~  411 (483)
                      ++++..+.+..+++.|.++.+      +.+..+.                            -.|+... ..+.  ..+.
T Consensus       424 l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~  503 (713)
T PRK15399        424 LINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGN  503 (713)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccc
Confidence            788888888889988876544      3332110                            0122111 1110  0010


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .+...-....+. +.|+++||.+......         .+=+.++...|++++++++++|.++-
T Consensus       504 ~~~~Gi~g~~l~-~~L~e~gI~~E~~d~~---------~vL~l~s~g~t~~~~~~L~~aL~~f~  557 (713)
T PRK15399        504 MSEEGIPAALVA-KFLDERGIVVEKTGPY---------NLLFLFSIGIDKTKAMGLLRGLTEFK  557 (713)
T ss_pred             cccCCCCHHHHH-HHHHHcCCEEEecCCC---------eEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            001111122344 4567789998765332         25677888999999999999998763

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.67  E-value=2e-14  Score=146.56  Aligned_cols=269  Identities=18%  Similarity=0.186  Sum_probs=181.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-C--CEEEecccHHHHHhhhhhhcc-----C----
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-P--DSILYSYGLSTMFSAIPCFCK-----K----  192 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-e--~~i~~~sG~~a~~~ai~~~~~-----~----  192 (483)
                      ++...+++...+.+- .+  .+..+.++.....++-..++++++. +  ...++++|++||..++.+...     .    
T Consensus        75 ~~~a~~~~~~~~~~n-l~--d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~  151 (460)
T COG0076          75 PPVAAELLVSALNKN-LG--DPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES  151 (460)
T ss_pred             HHHHHHHHHHHHhhc-CC--CcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence            345555666665552 21  1111224556667777777888876 3  356779999999977654321     0    


Q ss_pred             -----CcEEEEcCCchhHHHhHhhhcCCeEEEec----C--CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          193 -----GDLIVADEGVHWGIQNGLYLSRSTVVYFK----H--NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       193 -----gdiI~~~~~~h~s~~~g~~~s~~~v~~~~----~--~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                           ...|+++..+|+|..+++.+.|.....++    +  -|++++++.+.+....      .  +||....+.++|.+
T Consensus       152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~------g--~vV~~aGtT~~G~i  223 (460)
T COG0076         152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIG------G--VVVGTAGTTDTGSI  223 (460)
T ss_pred             cccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccC------c--eEEEEecCCCCCcc
Confidence                 12699999999999999999887554433    1  2889999999876432      1  35555555677999


Q ss_pred             cChHHHHHHHHHcCcEEEEeCccccccccC-CCCccccccCCCCCceeEEEcccccccc---CCCceeeccH-HHHHHHH
Q 011567          262 APLDELIRLKEKYRFRVFLDESNSFGVLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALA---TEGGFCTGSA-RVVDHQR  336 (483)
Q Consensus       262 ~~L~~l~~l~~k~~~~li~DEa~s~g~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg---~~GG~i~~~~-~~~~~~~  336 (483)
                      .|+++|.++|++|++++++|.+++++.+.- ..++.. .+++  ..+|-++.+++|.+.   ++|.+++.++ .+.+.+.
T Consensus       224 Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l--~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~  300 (460)
T COG0076         224 DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGL--EGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILI  300 (460)
T ss_pred             CCHHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCC--CCceEEEECcccccCCCCCceEEEEECHHHhhhhhh
Confidence            999999999999999999999998776521 111110 1444  556888999999996   2345566666 3544443


Q ss_pred             hcC--------CceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          337 LSS--------SGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       337 ~~~--------~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ...        ..++-..+-+...++++...++.+-  ...++.++..++++++.+.|.+.+.+++..++..|++.++++
T Consensus       301 ~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~  380 (460)
T COG0076         301 FADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLK  380 (460)
T ss_pred             cccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcC
Confidence            110        1111112233435666667777773  336788888899999999999986699998889999999985


Q ss_pred             C
Q 011567          407 K  407 (483)
Q Consensus       407 ~  407 (483)
                      +
T Consensus       381 ~  381 (460)
T COG0076         381 D  381 (460)
T ss_pred             C
Confidence            4

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.66  E-value=2.6e-14  Score=139.51  Aligned_cols=210  Identities=19%  Similarity=0.194  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le  229 (483)
                      +....+++.++++.|.+.+++|+||.+|+..++..+.+.|+.|++....+..++.-++    ..|.....+   |+++++
T Consensus        77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~v---d~~~~~  153 (409)
T KOG0053|consen   77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFV---DVDDLK  153 (409)
T ss_pred             CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeee---chhhHH
Confidence            4467899999999999999999999999999999999999988777666666554433    345555454   455555


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ++.+...+       ++.+|++|.+.|+...+.++++|+++|++||+++++|++.+.+..-       .-.   +-.+||
T Consensus       154 ~~~~~i~~-------~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~-------~pL---~lGADI  216 (409)
T KOG0053|consen  154 KILKAIKE-------NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ-------DPL---PLGADI  216 (409)
T ss_pred             HHHHhhcc-------CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccccc-------Chh---hcCCCE
Confidence            54444433       3889999999999999999999999999999999999997654221       111   233599


Q ss_pred             EEccccccccC----CCceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|.+|.+|+    .||.++.+ .+....++.....  -.+.++|+.|.-....++.+.   -++++..+++-.+.+.|
T Consensus       217 V~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~--lg~~~~p~~~~ll~Rglktl~---lRi~~~~ena~~~A~~L  291 (409)
T KOG0053|consen  217 VVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQED--LGWCEDPFDLFLLSRGLKTLH---LRINKHSENALKIALLL  291 (409)
T ss_pred             EEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHH--hcCCCCHHHHHHHhcCcchhh---hhHHHHHHHHHHHHHHh
Confidence            99999999973    45777775 6666665433211  123467887776666555442   24455555655555556


Q ss_pred             ccCC
Q 011567          385 SDIH  388 (483)
Q Consensus       385 ~~~~  388 (483)
                      .+.+
T Consensus       292 e~~~  295 (409)
T KOG0053|consen  292 EAHP  295 (409)
T ss_pred             hhCC
Confidence            5544

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.64  E-value=1.4e-13  Score=127.34  Aligned_cols=291  Identities=15%  Similarity=0.150  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHhhhCCCCE---EEecccHHHHHhhhhhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecCC-----C
Q 011567          155 VHLDCEARIAKFLGTPDS---ILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKHN-----D  224 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e~~---i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~~-----d  224 (483)
                      +..++.+-+...|.+...   ++-.+|+.+.++|+-.+..+||.|++-..--++  ..+-.+.-|+++..++..     .
T Consensus        51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~  130 (385)
T KOG2862|consen   51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVP  130 (385)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCcc
Confidence            445566666666665432   334899999999999898999977654433333  223445567777766432     5


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      .+++++.|.++.         .++|.+.+.-+.||.+.| ++.+-++|++|+++|++|.+-|.|-..         |.++
T Consensus       131 le~i~~~lsqh~---------p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~---------F~mD  192 (385)
T KOG2862|consen  131 LEEITEKLSQHK---------PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTE---------FEMD  192 (385)
T ss_pred             HHHHHHHHHhcC---------CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCcc---------ceeh
Confidence            788888887754         456666666677899999 788999999999999999999865321         2333


Q ss_pred             CCceeEEEccccccccCCC--ceeeccHHHHHHHHhcCCc---------------------eeecCCCcHHHHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSSSG---------------------YVFSASLPPYLASAAITAI  360 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~~~---------------------~~fs~~~~p~~~aaa~~al  360 (483)
                      .-.+|+....--|++|.+.  +.+..++...+.++.+...                     -.|-.+.|-....+..++|
T Consensus       193 ewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL  272 (385)
T KOG2862|consen  193 EWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL  272 (385)
T ss_pred             hhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH
Confidence            3455887777799998544  4566777777776543210                     1222334555566667888


Q ss_pred             HHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC---CCCCEE-EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567          361 DVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN---PESPIV-FLILEKSTGSMKNDLQLLEDIADWALKEDGVFV  434 (483)
Q Consensus       361 ~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~---~~~~i~-~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v  434 (483)
                      +.+.++  ++.+++.++++++++..|+++ |++....   ...|-+ .+.++.  +   .|   ..+++.+++.+.++.+
T Consensus       273 ~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~--g---vD---w~dVv~~~~~~~~vei  343 (385)
T KOG2862|consen  273 ALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPY--G---VD---WKDVVAYAMSHYVVEI  343 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCC--C---CC---HHHHHHHHHHhcCEEe
Confidence            877543  578999999999999999986 7764432   123322 222221  1   12   3467888888777777


Q ss_pred             EeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHHHHHH
Q 011567          435 VTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       435 ~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+-.++.+     .-+||.+.. .-+.+.|++.++.|+.++.+
T Consensus       344 ~gglg~~~g-----Kv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  344 GGGLGPTVG-----KVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             ccccCCCcc-----cEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            765555442     238996544 44789999999999888765

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.64  E-value=2.1e-13  Score=135.10  Aligned_cols=345  Identities=15%  Similarity=0.142  Sum_probs=208.7

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF  189 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~  189 (483)
                      -+||+-|-.--+- ..++..+|+..     |-      ..|+-.+...+|++..++++|.+.++.+.+|..+...+++.+
T Consensus        42 V~IDLrSDTgT~a-pS~~m~aAM~~-----GD------D~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~  109 (467)
T TIGR02617        42 VFIDLLTDSGTGA-VTQSMQAAMMR-----GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL  109 (467)
T ss_pred             eEEECccCCCCCC-CCHHHHHHHHc-----CC------cccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhh
Confidence            4789988655443 34666666553     21      134445567899999999999999999999999999999999


Q ss_pred             cc-CCcEEEEcCC-------chhHH-HhHhhhcCCeEEEe--------------cCC-CHHHHHHHHHHhhhhhhhccCc
Q 011567          190 CK-KGDLIVADEG-------VHWGI-QNGLYLSRSTVVYF--------------KHN-DMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       190 ~~-~gdiI~~~~~-------~h~s~-~~g~~~s~~~v~~~--------------~~~-d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      ++ ||+.+.++..       +|+-. .....++|...+.+              +-+ |++.|++.+++...+      .
T Consensus       110 ~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~------~  183 (467)
T TIGR02617       110 IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN------N  183 (467)
T ss_pred             cccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC------C
Confidence            98 6776665443       33443 23456677665442              112 888999999765322      2


Q ss_pred             cEEEEEecccC-CCCCccC---hHHHHHHHHHcCcEEEEeCccccc-cc-------cCCCCcccccc-CCCCCceeEEEc
Q 011567          246 RRYIVVEAVYQ-NSGQIAP---LDELIRLKEKYRFRVFLDESNSFG-VL-------GRSGRGLTEHC-GVPVDKIDIVTA  312 (483)
Q Consensus       246 ~~~iv~e~v~~-~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g-~l-------g~~G~g~~~~~-~v~~~~~Di~~~  312 (483)
                      ..++.+.-+.| .+|...|   +.++.++|++||+.+++|.+.-+- ..       +..+....+.. .+ ....|.++.
T Consensus       184 i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~-~~~aDsvt~  262 (467)
T TIGR02617       184 VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRET-YKYADMLAM  262 (467)
T ss_pred             ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHh-hccCCEEEE
Confidence            34444443333 3577777   688999999999999999875321 11       22223222211 00 133488899


Q ss_pred             ccccccc-CCCceeeccHH----HHHHHHhcCC---ce-eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          313 AMGHALA-TEGGFCTGSAR----VVDHQRLSSS---GY-VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       313 s~~K~lg-~~GG~i~~~~~----~~~~~~~~~~---~~-~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |++|.+| +.||+++++++    +.+..+....   ++ +|+ ++.---+.|....|+...+ .+.++.--...++|.+.
T Consensus       263 slsKglgApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYG-Glagrd~ea~a~Gl~e~~~-~~yl~~ri~qv~yl~~~  340 (467)
T TIGR02617       263 SAKKDAMVPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYG-GLEGGAMERLAVGLYDGMN-LDWLAYRINQVQYLVNG  340 (467)
T ss_pred             EcCCCCCCcccceEEecchhHHHHHHHHHhhcccccCCcCcC-chhHHHHHHHHhhhhhccc-HHHHHHHHHHHHHHHHH
Confidence            9999998 56999988765    2233222211   21 333 2333223322223433322 23555555677899999


Q ss_pred             hccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec------ccccccCCCC--CceEEEc
Q 011567          384 LSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK------RSMLDKCRLP--VGIRLFV  455 (483)
Q Consensus       384 L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~------~~~~~~~~~~--~~lRi~~  455 (483)
                      |.+. |+++.. .++.-+++.-+.-......+.--.+.++.++..+.||-..-..      .|.-.....+  .-+|+++
T Consensus       341 L~~~-Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~Rlai  418 (467)
T TIGR02617       341 LEEI-GVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTI  418 (467)
T ss_pred             HHhC-CCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeecc
Confidence            9885 999987 6777777753221011111222355666666666777533211      1111111111  2399987


Q ss_pred             cC-CCCHHHHHHHHHHHHHHHHH
Q 011567          456 SA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       456 ~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      +- ..|.+++|.+++++..+.++
T Consensus       419 pRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       419 PRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             ccccccHhHHHHHHHHHHHHHhh
Confidence            65 56999999999999887654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.64  E-value=4.2e-13  Score=140.63  Aligned_cols=363  Identities=13%  Similarity=0.132  Sum_probs=222.0

Q ss_pred             EEeecC-CCCCCCCChHHHHHHHHHHH--hcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEecccHHHHHhhh
Q 011567          112 VNFASA-NYLGLIGHEKLLESCTSALE--KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLSTMFSAI  186 (483)
Q Consensus       112 id~~s~-~~lG~~~~p~i~~a~~~~l~--~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~a~~~ai  186 (483)
                      +.+.+. .|+||...+...-++...+-  -+..+.+......++.....++-+++++++|.+.  ..++++|+.||..++
T Consensus        78 v~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL  157 (608)
T TIGR03811        78 VPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGL  157 (608)
T ss_pred             CCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHH
Confidence            345554 77888765555444443322  2334444444444567788889999999999653  678899999988764


Q ss_pred             hhhcc---------C-------------------------------------------------CcEEEEcCCchhHHHh
Q 011567          187 PCFCK---------K-------------------------------------------------GDLIVADEGVHWGIQN  208 (483)
Q Consensus       187 ~~~~~---------~-------------------------------------------------gdiI~~~~~~h~s~~~  208 (483)
                      -+...         .                                                 --.+++++..|+|+.+
T Consensus       158 ~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~K  237 (608)
T TIGR03811       158 WYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLK  237 (608)
T ss_pred             HHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHH
Confidence            22110         0                                                 0158889999999999


Q ss_pred             HhhhcCC---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHH---HHcCc-
Q 011567          209 GLYLSRS---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK---EKYRF-  276 (483)
Q Consensus       209 g~~~s~~---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~---~k~~~-  276 (483)
                      ++.+.|.   .++.++.+     |+++|++.+++...+    ...+.+||...-...+|.+.||++|.++|   +++|+ 
T Consensus       238 Aa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~----g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~  313 (608)
T TIGR03811       238 AADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAE----KTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIY  313 (608)
T ss_pred             HHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhc----CCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCc
Confidence            9998876   46666643     789999999765432    12344455444455679999999999999   67887 


Q ss_pred             -EEEEeCcccccc---c-cCCC----------------------Cccc-----cccCCCCCceeEEEcccccccc---CC
Q 011567          277 -RVFLDESNSFGV---L-GRSG----------------------RGLT-----EHCGVPVDKIDIVTAAMGHALA---TE  321 (483)
Q Consensus       277 -~li~DEa~s~g~---l-g~~G----------------------~g~~-----~~~~v~~~~~Di~~~s~~K~lg---~~  321 (483)
                       ++++|.++++..   + ...+                      ..+.     ..-++  ..+|-++...||++.   ++
T Consensus       314 ~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl--e~ADSItvDpHK~g~~Py~~  391 (608)
T TIGR03811       314 FYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI--SEAESVTIDPHKMGYIPYSA  391 (608)
T ss_pred             eeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcC--cCceEEEeCcccccccCCCe
Confidence             699999998642   1 1100                      0000     01133  457888889999996   44


Q ss_pred             CceeeccHHHHHHHHhcCCceee---------------cCCCcHHHHHHHHHHHHHH--h--cCcHHHHHHHHHHHHHHH
Q 011567          322 GGFCTGSARVVDHQRLSSSGYVF---------------SASLPPYLASAAITAIDVL--E--ENPDLITKLKKNTAILRT  382 (483)
Q Consensus       322 GG~i~~~~~~~~~~~~~~~~~~f---------------s~~~~p~~~aaa~~al~~l--~--~~~~~~~~l~~~~~~l~~  382 (483)
                      |++++.++.+.+.+... ..|.+               .++-+...+++...+++.+  .  ...+++++..++++++.+
T Consensus       392 G~ll~Rd~~~~~~~~~~-a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~  470 (608)
T TIGR03811       392 GGIVIQDIRMRDVISYF-ATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYD  470 (608)
T ss_pred             EEEEEeCHHHHHHHhcC-cchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            66777777766654322 22222               2222334455555677766  2  235688888899999999


Q ss_pred             hhccC------CCcee--ecCCCCCEEEEEecCCCCCc-hhhHHHHHHHHHHHH------HhCCEEEEeeccc--cc---
Q 011567          383 GLSDI------HGLSI--ASNPESPIVFLILEKSTGSM-KNDLQLLEDIADWAL------KEDGVFVVTSKRS--ML---  442 (483)
Q Consensus       383 ~L~~~------~~~~i--~~~~~~~i~~l~l~~~~~~~-~~~~~~~~~i~~~~l------~~~Gv~v~~~~~~--~~---  442 (483)
                      .|.+.      +.+++  ..+++.+++.+++....... .......+++.+++-      .+.-++++...+.  ..   
T Consensus       471 ~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~  550 (608)
T TIGR03811       471 FLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDS  550 (608)
T ss_pred             HHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhh
Confidence            99773      34555  55678889999986443211 223444555555432      1223344332221  00   


Q ss_pred             -----ccCCC------C-Cc---eEEEc--cCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          443 -----DKCRL------P-VG---IRLFV--SAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       443 -----~~~~~------~-~~---lRi~~--~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                           +....      + .+   ||-++  +....++.++...+.|++++.+.+.+
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~~~  606 (608)
T TIGR03811       551 PFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKLEK  606 (608)
T ss_pred             HHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHHHh
Confidence                 00000      0 11   77654  33445588899999999888776653

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.56  E-value=9.8e-13  Score=144.16  Aligned_cols=318  Identities=14%  Similarity=0.101  Sum_probs=199.5

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI  186 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai  186 (483)
                      .+.||....+.++-.++.+.+++.+...-|.. +...+-...|..+...+++..+|+++|.+  ++-++.+++++.+.++
T Consensus       103 ~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~  182 (993)
T PLN02414        103 VFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMA  182 (993)
T ss_pred             ccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHH
Confidence            36677777676774445555877765543221 11112222455566788899999999976  5778888887777665


Q ss_pred             hhhc---cCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          187 PCFC---KKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       187 ~~~~---~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      .+..   ++++.|++++..|.+....++    ..|.+++.++..+.+       ....       .+..++ -...+.+|
T Consensus       183 ~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~-------~~~~-------~v~~vl-vq~P~~~G  247 (993)
T PLN02414        183 MCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD-------YSSG-------DVCGVL-VQYPATDG  247 (993)
T ss_pred             HHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc-------cccC-------ceEEEE-EecCCCCe
Confidence            4442   245789999999988765553    347788777654321       1111       133333 33445679


Q ss_pred             CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC------ceeeccHHHHH
Q 011567          260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG------GFCTGSARVVD  333 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G------G~i~~~~~~~~  333 (483)
                      .+.|+++|.++|+++|+++++ .++..+..+-.   -...     -.+||++++..|+.++.|      ||++.+++...
T Consensus       248 ~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge-----~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r  318 (993)
T PLN02414        248 EVLDYAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGE-----WGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR  318 (993)
T ss_pred             EEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhh-----ccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence            999999999999999999999 66665433210   0111     245999999999985444      88888887765


Q ss_pred             HHHhc----------CCce-----------eec-CCCcHHHHHHHHHHHH-----HH--hcCcHHHHHHHHHHHHHHHhh
Q 011567          334 HQRLS----------SSGY-----------VFS-ASLPPYLASAAITAID-----VL--EENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       334 ~~~~~----------~~~~-----------~fs-~~~~p~~~aaa~~al~-----~l--~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      .+...          ..+|           .|. ++.|.....+..+++.     ++  ...+++.+++.+++.+++++|
T Consensus       319 ~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L  398 (993)
T PLN02414        319 LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGL  398 (993)
T ss_pred             hCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            43210          0111           011 1223322222223332     11  122456788899999999999


Q ss_pred             ccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH
Q 011567          385 SDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       385 ~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi  464 (483)
                      .+. |+++..++....+.+.+.+           ..++.++++ ++||.++...         .+.+|+|++..+|++||
T Consensus       399 ~~~-G~~~~~~~~f~~vt~~~~~-----------~~~v~~~L~-~~gI~l~~~~---------~~~lrvs~~e~~T~edI  456 (993)
T PLN02414        399 KKL-GFQVQSLPFFDTVKVKCSD-----------ADAIADAAA-KVGINLRVVD---------ANTVTVSFDETTTLEDV  456 (993)
T ss_pred             hhc-CCccCCCCCcCeEEEecCC-----------HHHHHHHHH-HCCCeeEEec---------CCeEEEEeeccCCHHHH
Confidence            874 8887654444455555521           135676654 5699877542         13499999999999999


Q ss_pred             HHHHHHHHH
Q 011567          465 VKACESLKR  473 (483)
Q Consensus       465 ~~~~~~l~~  473 (483)
                      |+++++|..
T Consensus       457 d~L~~~l~~  465 (993)
T PLN02414        457 DKLFKVFAG  465 (993)
T ss_pred             HHHHHHHcc
Confidence            999999963

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.55  E-value=1.4e-12  Score=117.80  Aligned_cols=286  Identities=15%  Similarity=0.145  Sum_probs=183.1

Q ss_pred             HHHHHHHhhhCC-CCEEEecccH-HHHHhhhhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHH
Q 011567          158 DCEARIAKFLGT-PDSILYSYGL-STMFSAIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLR  229 (483)
Q Consensus       158 ~l~~~La~~~g~-e~~i~~~sG~-~a~~~ai~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le  229 (483)
                      ++...+++--+. .+-+...-|+ +.+.+.|++.+-+| +.|+.-.+.++-+.-.....+..++.++.+     |.+.+.
T Consensus        73 ~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~  152 (375)
T KOG0633|consen   73 RLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIA  152 (375)
T ss_pred             hhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHH
Confidence            444455544443 3556666666 66788899999887 344433333333223345567778777755     567777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc-CcEEEEeCcccccc-ccCCCCccccccCCCCCce
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY-RFRVFLDESNSFGV-LGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~-~~~li~DEa~s~g~-lg~~G~g~~~~~~v~~~~~  307 (483)
                      +.++...        ..+++++.+..+++|.+...+.|.++.+.- +.++++||+|--+. .+.+-.+..++-+      
T Consensus       153 evl~~ds--------~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpN------  218 (375)
T KOG0633|consen  153 EVLELDS--------KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPN------  218 (375)
T ss_pred             HHHhccc--------cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCc------
Confidence            7775532        267788888888999999988888888765 79999999985321 2222222233322      


Q ss_pred             eEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAID--VLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       308 Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~--~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      -+++.|+||+||..|   ||++.+..+.+.+.....+|.-|...    -.+|++|+.  -.+.....++.+.+...++.+
T Consensus       219 LivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYNiS~~~----s~~AL~Als~~n~kkme~~rdaiv~er~RL~k  294 (375)
T KOG0633|consen  219 LIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYNISVAG----SVAALAALSDSNGKKMEDVRDAIVRERERLFK  294 (375)
T ss_pred             eeehhhhhhhcCcceeEeecccccHHHHHHHHhccCCccccchh----HHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence            466789999999877   99999999999887666777555422    222333332  111112356666667777888


Q ss_pred             hhccCCCce-eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          383 GLSDIHGLS-IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       383 ~L~~~~~~~-i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      .|.+++++. +.+...++++.+++.+.      +...+.++..+.+.+.||.++.......    ..+.+||++   -|+
T Consensus       295 eLt~v~~~~~~~gg~daNFiLi~v~~~------~n~~akkly~q~at~~gVvVRfrgse~~----c~G~lRitv---Gt~  361 (375)
T KOG0633|consen  295 ELTEVPFLNDYPGGSDANFILIEVTGG------DNGMAKKLYKQDATKMGVVVRFRGSEEG----CKGYLRITV---GTP  361 (375)
T ss_pred             HhhcCccccCCCCcccccEEEEEEcCC------CcHHHHHHHHHHHHhcceEEEEcCCccc----cceeEEEEc---CCc
Confidence            888887654 33455788888888542      2233445566666778999985432110    123499998   477


Q ss_pred             HHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRI  474 (483)
Q Consensus       462 edi~~~~~~l~~~  474 (483)
                      |+-+-+++.++++
T Consensus       362 EentvL~k~~K~~  374 (375)
T KOG0633|consen  362 EENTVLMKCLKQF  374 (375)
T ss_pred             ccchHHHHHHHhh
Confidence            8888888887764

>PLN02452 phosphoserine transaminase

Probab=99.55  E-value=6.3e-12  Score=125.38  Aligned_cols=321  Identities=16%  Similarity=0.157  Sum_probs=200.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc-----ChHHHHHHHHHHHhhhCCC---CEEEe-cccHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG-----TIDVHLDCEARIAKFLGTP---DSILY-SYGLS  180 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g-----~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~  180 (483)
                      +.++|+.+ +.-  -+++|++++.+.+..|.- ++.+....+     -.++..+.++.|.++++.+   +++++ .+|+.
T Consensus         7 ~~~~f~pG-P~~--lp~~Vl~~~~~~~~~~~~-~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~   82 (365)
T PLN02452          7 RVFNFSAG-PAT--LPANVLAKAQAELYNWEG-SGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST   82 (365)
T ss_pred             ceEeeeCC-CCC--CCHHHHHHHHHHHhcccc-cCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence            35677654 111  358888888887765421 111111111     1257789999999999974   34555 77888


Q ss_pred             HHHhhhhhhccCCc-EEEEcCCchhH-HHhHhhhcCCeEEEe--cCCC---HHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          181 TMFSAIPCFCKKGD-LIVADEGVHWG-IQNGLYLSRSTVVYF--KHND---MDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       181 a~~~ai~~~~~~gd-iI~~~~~~h~s-~~~g~~~s~~~v~~~--~~~d---~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ++++++..+..+++ ..++..+.++. ..+-++..|...+..  +..+   +-+++++ +. ..       ....|.+.+
T Consensus        83 ~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~-------~~~~v~~~h  153 (365)
T PLN02452         83 QFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW-EL-TP-------DAKFVHICA  153 (365)
T ss_pred             HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc-CC-CC-------CCcEEEECC
Confidence            89999888887776 44455555443 223333334322222  1121   2233332 11 11       245666666


Q ss_pred             ccCCCCC-ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          254 VYQNSGQ-IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       254 v~~~~G~-i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      .-+.+|. +.|++++.      ++++++|.++++|...         .++  ++.++..+|..|.+|+.| |+++.+++.
T Consensus       154 nETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~p---------idv--~~~~v~~~saqK~lGP~Gl~~v~vr~~~  216 (365)
T PLN02452        154 NETIHGVEFKDYPDVG------NVPLVADMSSNFLSKP---------VDV--SKYGVIYAGAQKNVGPSGVTIVIIRKDL  216 (365)
T ss_pred             CCCCCcEecCcccccC------CCeEEEECCccccCcc---------cCH--HHcCEEEEecccccCCCCeEEEEEcHHH
Confidence            5566788 57887764      2899999999876321         233  333455569999999887 888888888


Q ss_pred             HHHHHhcCCce-----------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceee-cC-
Q 011567          332 VDHQRLSSSGY-----------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIA-SN-  395 (483)
Q Consensus       332 ~~~~~~~~~~~-----------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~-  395 (483)
                      .+........+           .| .++|-....+..++++++++.   +.+.++.+++.+++++.|++.+|+... .+ 
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~s~~-~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~  295 (365)
T PLN02452        217 IGNARPITPGMLDYKIHAENDSLY-NTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEK  295 (365)
T ss_pred             HhhcccCCCchhhHHHHHhcCCcc-CChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh
Confidence            76543221111           11 234555666777899988753   478889999999999999987776111 11 


Q ss_pred             -CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          396 -PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       396 -~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                       .+++ ++.+.+++.        ....++.+. ++++|+...++... +      .++|+++-..++.++++++++.+++
T Consensus       296 ~~rs~~~vsF~~~~~--------~~~~~f~~~-~~~~g~~~~~G~r~-~------gg~R~s~yna~~~~~v~~L~~~m~~  359 (365)
T PLN02452        296 SVRSLMNVPFTLGGS--------ELEAEFVKE-AAKAGMVQLKGHRS-V------GGMRASIYNAMPLAGVEKLVAFMKD  359 (365)
T ss_pred             HHhCCeEEEEEcCCc--------hhHHHHHHH-HHHCCCcccCCccc-c------CceEEECcCCCCHHHHHHHHHHHHH
Confidence             1344 666766431        234467765 56679988766442 1      4599999999999999999999998


Q ss_pred             HHHH
Q 011567          474 ISAV  477 (483)
Q Consensus       474 ~~~~  477 (483)
                      .-++
T Consensus       360 f~~~  363 (365)
T PLN02452        360 FQAK  363 (365)
T ss_pred             HHHh
Confidence            7654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.52  E-value=2.3e-12  Score=130.96  Aligned_cols=224  Identities=19%  Similarity=0.267  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-C--------
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-N--------  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-~--------  223 (483)
                      ....+.++..|+.+|.++..+..+|+ .+|..++.+.+++||.|++|+.+|-|+..|+-++|++.+++.. .        
T Consensus        70 G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~g  149 (557)
T COG1982          70 GPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIG  149 (557)
T ss_pred             ccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccC
Confidence            36789999999999999988886665 7789999999999999999999999999999999998776542 1        


Q ss_pred             --CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC
Q 011567          224 --DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG  301 (483)
Q Consensus       224 --d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~  301 (483)
                        +.+.+++.+.+....      .+.+|++.|.|-  |.+.++++|++.+.++++|+.+||++..- .+..+.. .+ ..
T Consensus       150 gI~~~~~~~~l~~~~~~------~k~~vitnpTYd--Gv~~n~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l-~~-~~  218 (557)
T COG1982         150 GIPLETFKEALLAHPDA------EKLAVITNPTYD--GVCYNLRKIVELLHHYGAWVLYDEAHPAH-FDFSPML-PE-SA  218 (557)
T ss_pred             CCCHHHHHHHHHhChhh------heeEEEecCccc--eEeecHHHHHHHHhhcCceEEhhhcCccc-ccccccC-cc-hh
Confidence              567787777665432      156788888774  99999999999999999999999998753 2221111 11 11


Q ss_pred             CCCCceeEEEcccccccc--CCCceeecc-------HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHH-
Q 011567          302 VPVDKIDIVTAAMGHALA--TEGGFCTGS-------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDL-  369 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg--~~GG~i~~~-------~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~-  369 (483)
                      .. ...|+++-|.+|.++  +.+.++-.+       +++-+.+..     .-|+| |.+..-|.+.+-+....  ..++ 
T Consensus       219 ~~-~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~-----h~STS-PsY~l~ASlD~Ar~~~~~~G~~l~  291 (557)
T COG1982         219 LN-GGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMM-----HQSTS-PSYPLMASLDVARMQEGNAGRELW  291 (557)
T ss_pred             hh-cCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHH-----HccCC-chHHHHHHHHHHHHhhhhhhHHHH
Confidence            11 456999999999997  233333222       223333322     12333 44444334433232222  1233 


Q ss_pred             ---HHHHHHHHHHHHHhhccCCCceeecC
Q 011567          370 ---ITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       370 ---~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                         ++..-+.++.+++..+++.++++..+
T Consensus       292 ~~~~~~~i~~r~~~~~~~~~~~~~~~~~~  320 (557)
T COG1982         292 QEVIDEAIDFRKALRRLINEIGFFPVLQP  320 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence               45556667777777777766665543

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.49  E-value=1.5e-11  Score=135.47  Aligned_cols=278  Identities=13%  Similarity=0.059  Sum_probs=177.9

Q ss_pred             cccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc-cC--CcEEEEcCCchhHHHhHh----hhcCCeEEE
Q 011567          149 FYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC-KK--GDLIVADEGVHWGIQNGL----YLSRSTVVY  219 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~-~~--gdiI~~~~~~h~s~~~g~----~~s~~~v~~  219 (483)
                      .-|+.+...++++.+++++|.+  ++-++.+++++.+.++.++. ++  ++.|++++..|.+....+    +..|.+++.
T Consensus       116 sQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~  195 (954)
T PRK05367        116 SQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVV  195 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence            3455567788899999999987  45777777777666655542 22  489999999998876544    456788888


Q ss_pred             ecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccc
Q 011567          220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH  299 (483)
Q Consensus       220 ~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~  299 (483)
                      ++..+  +++       .+      .+..+++ ...+.+|.+.|+++|.++|+++|+++++|..+....+...    ...
T Consensus       196 ~~~~~--d~~-------~~------~~~~vlv-q~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~----pge  255 (954)
T PRK05367        196 GDAAK--ALD-------HD------DVFGVLL-QYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP----PGE  255 (954)
T ss_pred             ecCcc--CCC-------cc------cEEEEEE-ecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC----hhh
Confidence            87653  121       11      2444433 3446679999999999999999999999986622222210    111


Q ss_pred             cCCCCCceeEEEcccccc-----ccCCC-ceeeccHHHHHHHHhcC----------Ccee-----------ecC-CCc--
Q 011567          300 CGVPVDKIDIVTAAMGHA-----LATEG-GFCTGSARVVDHQRLSS----------SGYV-----------FSA-SLP--  349 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~-----lg~~G-G~i~~~~~~~~~~~~~~----------~~~~-----------fs~-~~~--  349 (483)
                           -.+||++++..|+     +|++| ||+..++++.+.+...-          .+|.           |.. +.|  
T Consensus       256 -----~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNic  330 (954)
T PRK05367        256 -----MGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNIC  330 (954)
T ss_pred             -----cCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccc
Confidence                 2349999999998     55443 88888887766553111          1121           111 111  


Q ss_pred             -HHHHHHHHHHH--HHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          350 -PYLASAAITAI--DVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       350 -p~~~aaa~~al--~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                       .....++.+++  .++..  .+++.++...++.+++++|++ .|+++........+.+.+..          ...++.+
T Consensus       331 t~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~~----------~~~~i~~  399 (954)
T PRK05367        331 TAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVGG----------DAAAVLA  399 (954)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCCC----------CHHHHHH
Confidence             11112222222  22222  245677888899999999977 48877544333344444310          1346777


Q ss_pred             HHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ++++ +||.++...         ...+|++++...|++||+++++++.
T Consensus       400 ~l~~-~gi~~~~~~---------~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        400 RALA-AGINLRRVD---------DDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             HHHH-CCceecccc---------CCEEEEEecccCCHHHHHHHHHHHc
Confidence            6554 599884321         2459999999999999999999996

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.48  E-value=1.8e-10  Score=106.42  Aligned_cols=340  Identities=17%  Similarity=0.183  Sum_probs=200.0

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHh------cCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEecccHHH
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEK------YGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLST  181 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~------~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG~~a  181 (483)
                      .+++..+|+.-.   |++.+...+...+      ++..-|...+..|...+...|.+.+.+.+|   .++-+..++|++.
T Consensus        32 ~imLggGNPa~i---Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs  108 (417)
T COG3977          32 AIMLGGGNPARI---PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQS  108 (417)
T ss_pred             ceeeCCCCcccC---hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccc
Confidence            677777777544   7777776665443      222344444445555666777777777777   4567777777744


Q ss_pred             -HHhhhhhhccC-----CcEEEEc-CCchhHHHhHhhhcCCeEE------------Eec-CCCHHHHHHHHHHhhhhhhh
Q 011567          182 -MFSAIPCFCKK-----GDLIVAD-EGVHWGIQNGLYLSRSTVV------------YFK-HNDMDSLRNTLERVTADNKR  241 (483)
Q Consensus       182 -~~~ai~~~~~~-----gdiI~~~-~~~h~s~~~g~~~s~~~v~------------~~~-~~d~~~Le~~l~~~~~~~~~  241 (483)
                       ..-+...|.++     .+.|+.+ .+.+-.+.++ -+...-.+            .|+ |.|.++|+-.     +    
T Consensus       109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~-~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~-----e----  178 (417)
T COG3977         109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADA-GLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIG-----E----  178 (417)
T ss_pred             hHHHHHHHhcCccCCCcceeEeeccChhhcccccc-ccCccceeeccCCcccccccceeeccCHHHcccc-----c----
Confidence             44555555543     2334433 2222222111 11111111            122 2366655321     1    


Q ss_pred             ccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc
Q 011567          242 AKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL  318 (483)
Q Consensus       242 ~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l  318 (483)
                         .+.+|++.-..+++|.+.-   +.+|-+|+++||+.|+.|.+|+.-.-   +--+.+.--+. .+.-|.+.|+||.=
T Consensus       179 ---~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP---~iifsd~~~~w-~~NiilC~SLSK~G  251 (417)
T COG3977         179 ---STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP---GIIFSDATPLW-NENIILCMSLSKLG  251 (417)
T ss_pred             ---ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC---ceecccccccC-CCCEEEEeehhhcC
Confidence               3778999999999998865   78888899999999999999874211   11111110011 22247778999953


Q ss_pred             --cCCCceeeccHHHHHHHHhcCCcee-ecCCCcHHHHHHHHHHHHHHh--cC---cHHHHHHHHHHHHHHHhhccCCCc
Q 011567          319 --ATEGGFCTGSARVVDHQRLSSSGYV-FSASLPPYLASAAITAIDVLE--EN---PDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       319 --g~~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p~~~aaa~~al~~l~--~~---~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                        |..-|.++++++++..+.....-.. ..+.+-|..++-+++.-+.++  +.   +=.+++.+.-...+++.|-+. .+
T Consensus       252 LPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~  330 (417)
T COG3977         252 LPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RC  330 (417)
T ss_pred             CCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-ce
Confidence              3445999999999998865432221 122344544444443322222  11   334566666777777777664 45


Q ss_pred             eeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc--cccccCCC--CCceEEEccCCCCHHHHHH
Q 011567          391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR--SMLDKCRL--PVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       391 ~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~--~~~~~~~~--~~~lRi~~~~~~t~edi~~  466 (483)
                      .+..+.+.-+.|+++++-.-       ..+++.++ |+++||++.|+.+  +.+++.-+  ...+|++.  .-+++.|++
T Consensus       331 ~iHkpEGAIFlWLWf~dLPI-------tt~~LYq~-LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~--~~~~~~ie~  400 (417)
T COG3977         331 LIHKPEGAIFLWLWFKDLPI-------TTEELYQR-LKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNY--VPEPEKIEK  400 (417)
T ss_pred             eeecCCcceeehhhhccCCC-------CHHHHHHH-HHhCeEEEecccccCCCCCCCCCCccceEEEec--CCCHHHHHH
Confidence            56655556677888754221       13356664 7788999998864  44432211  12388865  468899999


Q ss_pred             HHHHHHHHHHHHHhc
Q 011567          467 ACESLKRISAVVLRD  481 (483)
Q Consensus       467 ~~~~l~~~~~~~~~~  481 (483)
                      .+.+|.+.+++...+
T Consensus       401 Gva~lae~ve~~yq~  415 (417)
T COG3977         401 GVAILAEEVERAYQE  415 (417)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998877543

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.47  E-value=2.3e-11  Score=121.46  Aligned_cols=287  Identities=16%  Similarity=0.126  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHhhhCCC--C-EEEe-cccHHHHHhhhhhhc-cCCcEEEEcCCchhH-HH-hHhhhcCC-eEEEec--CC
Q 011567          154 DVHLDCEARIAKFLGTP--D-SILY-SYGLSTMFSAIPCFC-KKGDLIVADEGVHWG-IQ-NGLYLSRS-TVVYFK--HN  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e--~-~i~~-~sG~~a~~~ai~~~~-~~gdiI~~~~~~h~s-~~-~g~~~s~~-~v~~~~--~~  223 (483)
                      ++..+..+.|.++++.+  . ++++ +||+.++++++..+. ++|+.+++.. .++. .. +.++..|. ++..++  .+
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~~g  117 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAEYG  117 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCCCC
Confidence            57788899999999963  2 4444 899999999999887 4787666654 3322 23 55555666 344433  32


Q ss_pred             ---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          224 ---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       224 ---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                         |+++++.     .         ..+ .+.+.-+.+|...|++++.+.+  ++.++|+|.+-++|...         +
T Consensus       118 ~~~~~~~ve~-----~---------~~v-~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~---------l  171 (374)
T TIGR01365       118 KLPDLKKVDF-----K---------NDV-VFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQD---------L  171 (374)
T ss_pred             CCCCHHHcCC-----C---------CCE-EEecCCCchheecccccccccc--CCCcEEEEccchhcCCC---------C
Confidence               4555541     1         112 3434445569999987666332  58999999998876321         2


Q ss_pred             CCCCCceeEEEccccccccCCCc--eeeccHHHHHHHHhcCC-----c--------------ee-ecC-CCcHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALATEGG--FCTGSARVVDHQRLSSS-----G--------------YV-FSA-SLPPYLASAAI  357 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~~GG--~i~~~~~~~~~~~~~~~-----~--------------~~-fs~-~~~p~~~aaa~  357 (483)
                      .+  +++|+++++.-|+|++++|  +++.+++..+.......     .              +. ++. +.+-....++.
T Consensus       172 ~~--d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~  249 (374)
T TIGR01365       172 DY--HKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWL  249 (374)
T ss_pred             Ch--hHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHH
Confidence            33  4689999999999986665  56667766654332110     0              00 111 22333444556


Q ss_pred             HHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCC-ceeecC---CCCCE-EEEEecCCCC--Cc-hhhHHHHHHHHHHH
Q 011567          358 TAIDVLEE---NPDLITKLKKNTAILRTGLSDIHG-LSIASN---PESPI-VFLILEKSTG--SM-KNDLQLLEDIADWA  426 (483)
Q Consensus       358 ~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~-~~i~~~---~~~~i-~~l~l~~~~~--~~-~~~~~~~~~i~~~~  426 (483)
                      .+++.+++   .+...++.+++++.+++.++++ | +.+...   ..|+. ..+.+..+.-  .. +...+...++.+. 
T Consensus       250 ~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l-g~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~-  327 (374)
T TIGR01365       250 DALKWAESIGGLKPLIARADDNLAVLEAFVAKN-NWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELIST-  327 (374)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHH-
Confidence            67776654   2578999999999999999997 6 665542   24663 3444432210  00 1111112456654 


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++++||.+.++.....     +..+||.--..++.+|++.+++.|+=+.+
T Consensus       328 l~~~gi~i~~G~~~~~-----~~~fRIg~~G~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       328 LEKEGVAYDIGSYRDA-----PSGLRIWCGATVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             HHHCCEEEeccccccC-----CCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence            5566999987655422     24599988888999999999999986654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.40  E-value=1e-10  Score=113.45  Aligned_cols=302  Identities=15%  Similarity=0.162  Sum_probs=188.2

Q ss_pred             cChHHHHHHHHHHHhhhCCCCEEEe-cccHHH---HHhhhhhhc-----cCCcEEEEcCCchhHHHhHhhhcCCeEEEec
Q 011567          151 GTIDVHLDCEARIAKFLGTPDSILY-SYGLST---MFSAIPCFC-----KKGDLIVADEGVHWGIQNGLYLSRSTVVYFK  221 (483)
Q Consensus       151 g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a---~~~ai~~~~-----~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~  221 (483)
                      |...+..+|+++|++..|.+.+-+. ++|++.   -..+|+++-     ...++++++++.|+.-.....+.|.+++.++
T Consensus       106 G~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~  185 (496)
T COG1003         106 GYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVK  185 (496)
T ss_pred             HHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEe
Confidence            4456778999999999999887766 666643   345567663     2457999999999998888999999999998


Q ss_pred             CC-----CHHHHHHHHHHhhhhhhhccCccE-EEEEecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          222 HN-----DMDSLRNTLERVTADNKRAKKLRR-YIVVEAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       222 ~~-----d~~~Le~~l~~~~~~~~~~~~~~~-~iv~e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                      .+     |+++|++.+.+          .++ +.++.|.  .-|.... +.+|+++.+++|..|..|.+.--..+|....
T Consensus       186 ~~~~G~VDlddLk~k~~~----------~~AalMiTnPs--T~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rP  253 (496)
T COG1003         186 CDENGNVDLDDLRAKAED----------NLAALMITNPS--TLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARP  253 (496)
T ss_pred             cCCCCCccHHHHHHHhcc----------ceeEEEeccCc--ccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccc
Confidence            65     78999888763          244 4555442  2366544 9999999999999999999976555665333


Q ss_pred             ccccccCCCCCceeEEEccccccccC---CC----ceeeccHHHHHHHHh-----cCCceeec--------CC----CcH
Q 011567          295 GLTEHCGVPVDKIDIVTAAMGHALAT---EG----GFCTGSARVVDHQRL-----SSSGYVFS--------AS----LPP  350 (483)
Q Consensus       295 g~~~~~~v~~~~~Di~~~s~~K~lg~---~G----G~i~~~~~~~~~~~~-----~~~~~~fs--------~~----~~p  350 (483)
                      |   .+|     .|++-..++|+|+.   .|    |=+..+..+...+-.     ....|...        -+    .+.
T Consensus       254 G---d~G-----~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~  325 (496)
T COG1003         254 G---DMG-----FDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA  325 (496)
T ss_pred             c---ccc-----cceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcc
Confidence            2   123     27777799999962   12    223333333333221     00111100        00    122


Q ss_pred             HHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                      ....-+.+-+..+-.+  .+.-+...-|+.|+.++|+.  .+++.-.+..+..|=.+-+.........-...+++++++.
T Consensus       326 ~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD  403 (496)
T COG1003         326 SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLD  403 (496)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHh
Confidence            2222222333333211  22233334477889999976  4554323232333322221111111122345688998775


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                       .|+......+|.+    +++.+-|-|+-.-|++++|++++++.++.++.-
T Consensus       404 -~GfHaPT~~FPli----V~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~  449 (496)
T COG1003         404 -YGFHAPTMYFPLI----VAGTLMIEPTESESKEELDRFIDAMIAIREEAD  449 (496)
T ss_pred             -cCCCCCcccCccc----cccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             6998877777632    245588999999999999999999999887754

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.39  E-value=3.8e-10  Score=106.94  Aligned_cols=334  Identities=17%  Similarity=0.191  Sum_probs=197.3

Q ss_pred             EEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCC-----EEEecccH
Q 011567          111 VVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPD-----SILYSYGL  179 (483)
Q Consensus       111 ~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~-----~i~~~sG~  179 (483)
                      -|++..+ ||    .+..+.||+-..+. +|.-|..|.|.+.| .+...++|    ++--+.|+.+.     -+-.-||+
T Consensus        42 gieLIaSENF----ts~aVmeAlGS~ltNKYSEGyPG~RYYGG-ne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGS  116 (477)
T KOG2467|consen   42 GIELIASENF----TSRAVMEALGSCLTNKYSEGYPGARYYGG-NEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGS  116 (477)
T ss_pred             ceeEeecccc----hHHHHHHHHhHHhhcccccCCCcccccCc-chHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCC
Confidence            3444443 55    55788999888886 58899999995444 44444432    33344566542     12336999


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchh-HHHhHhh-----hcCCeE------EEecC----CCHHHHHHHHHHhhhhhhhcc
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHW-GIQNGLY-----LSRSTV------VYFKH----NDMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~-s~~~g~~-----~s~~~v------~~~~~----~d~~~Le~~l~~~~~~~~~~~  243 (483)
                      -||..+..++.++++.|.--+.-|+ .+-.|..     +|...+      +.+.+    -|.|.||+......       
T Consensus       117 PANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~fr-------  189 (477)
T KOG2467|consen  117 PANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFR-------  189 (477)
T ss_pred             chhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcC-------
Confidence            9999999999999997763222221 1222332     222222      11221    18888887665543       


Q ss_pred             CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccc-cCC
Q 011567          244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHAL-ATE  321 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~l-g~~  321 (483)
                        .++||.-. . ..-...+.++++++|++.|++|++|-+|-.|....   |.. .-|    +..||++.|.+|+| |+.
T Consensus       190 --Pk~iiaG~-S-aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA---~vipsPF----ey~DiVTTTTHKsLRGPR  258 (477)
T KOG2467|consen  190 --PKLIIAGT-S-AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAA---GVIPSPF----EYCDIVTTTTHKSLRGPR  258 (477)
T ss_pred             --CcEEEecc-c-cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhc---ccCCCcc----cccceeeccccccccCCc
Confidence              34555422 1 12345678999999999999999999996665431   222 112    34599999999999 788


Q ss_pred             CceeeccHHH------------HH---HHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhh
Q 011567          322 GGFCTGSARV------------VD---HQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       322 GG~i~~~~~~------------~~---~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L  384 (483)
                      ||.+.-++-+            .+   .+...-.+-..+ +++.-..++...||+.-..  ..+..+++.+|++.|.+.|
T Consensus       259 g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQG-GPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l  337 (477)
T KOG2467|consen  259 GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQG-GPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASAL  337 (477)
T ss_pred             ceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccC-CCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9987533311            11   111111111112 2223333333335554432  2467888999999999999


Q ss_pred             ccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC----C
Q 011567          385 SDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA----H  459 (483)
Q Consensus       385 ~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~----~  459 (483)
                      .+. |+.+.+. .+..++.+.+.+..    -+....+++++    .-+|.+.....|.-.....|+|||+.-++.    .
T Consensus       338 ~~~-Gy~lvtgGTDnHlvLvDLr~~G----~dGarvE~vle----~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~  408 (477)
T KOG2467|consen  338 ISR-GYKLVTGGTDNHLVLVDLRPKG----VDGARVEKVLE----LCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGF  408 (477)
T ss_pred             HHc-CceEecCCccceEEEEeccccC----CchHHHHHHHH----HhhhhhcCCcCCCCccccCCCceeccchhhcccCc
Confidence            886 9998754 35566766675432    23333444444    223444333223222222467899965554    4


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRISAV  477 (483)
Q Consensus       460 t~edi~~~~~~l~~~~~~  477 (483)
                      .++|.+++.+.|.++++-
T Consensus       409 ~e~df~~v~~fi~~av~i  426 (477)
T KOG2467|consen  409 GEEDFEKVADFIDRAVKI  426 (477)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            589999999999887653

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.39  E-value=3.5e-10  Score=111.82  Aligned_cols=309  Identities=15%  Similarity=0.113  Sum_probs=188.5

Q ss_pred             ChHHHHHHHHHHHhcCC-C----CCCCCCcccChHHHHHHHHHHHhhhCCC--C-EEEe-cccHHHHHhhhhhhccCCc-
Q 011567          125 HEKLLESCTSALEKYGV-G----SCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILY-SYGLSTMFSAIPCFCKKGD-  194 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~-g----~~~~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~-~sG~~a~~~ai~~~~~~gd-  194 (483)
                      +++|.+++.+.+..+.. |    .-+.|.- --.++..+.++.|.++++.+  . ++++ .+|+.+.+++...+.+++| 
T Consensus        16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~-~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~   94 (364)
T PRK12462         16 PDTVLEQVRQAVVELPETGLSVLGMSHRSS-WFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAA   94 (364)
T ss_pred             CHHHHHHHHHHHhcccccCccccccccccH-HHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCc
Confidence            57888888877766422 1    1111110 01257789999999999974  2 4444 5577888888888888888 


Q ss_pred             EE-EEcCCchhHHH-hHhhhcCCeEEEecC---CCHHH---HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          195 LI-VADEGVHWGIQ-NGLYLSRSTVVYFKH---NDMDS---LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       195 iI-~~~~~~h~s~~-~g~~~s~~~v~~~~~---~d~~~---Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      ++ ++..+.++.-. +-++..| .+.....   .+...   .++ ++ ..+       ...+|.+.+.-+.+|...|   
T Consensus        95 ~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~-~~-~~~-------d~~~v~~t~NETstGv~~~---  161 (364)
T PRK12462         95 APEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAE-LD-WDA-------RAPFRHYVSNETVEGLQFP---  161 (364)
T ss_pred             EEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHH-hc-cCC-------CCcEEEEccCCCCceEecC---
Confidence            44 45555544322 2222223 2322211   11111   111 11 111       1345655555555688776   


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcC------
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSS------  339 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~------  339 (483)
                        ++.+.++.++|+|-+-++|..           .++.++.|++.++.-|+||++| ++++-+++.++.....-      
T Consensus       162 --~~~~~~~~llvvD~sS~~~s~-----------pid~~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy  228 (364)
T PRK12462        162 --DAAGLPDSPLIADMSSDFMSR-----------PFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDF  228 (364)
T ss_pred             --cccccCCCeEEEEcCchhhCC-----------CCChHHccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhH
Confidence              333347999999999876421           1333566999999999999777 56667777665533211      


Q ss_pred             -----CceeecCCCcHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHhhccCCCcee---ecCCCCCE-EEEEec
Q 011567          340 -----SGYVFSASLPPYLASAAITAIDVLEEN----PDLITKLKKNTAILRTGLSDIHGLSI---ASNPESPI-VFLILE  406 (483)
Q Consensus       340 -----~~~~fs~~~~p~~~aaa~~al~~l~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i---~~~~~~~i-~~l~l~  406 (483)
                           ....|. ++|-....++..+++++.++    +.+.++.+++++.+++.+++.+++..   ....+|.+ +.+++.
T Consensus       229 ~~~~~~~s~~n-TPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~  307 (364)
T PRK12462        229 RTHVEHRSNYN-TPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFR  307 (364)
T ss_pred             HHHHhcCCCCC-CchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcC
Confidence                 111222 34555566777889988543    46888889999999999998865432   22334544 444553


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                              ++....++.+.+ +++|+.-..+.. +      .+|+|+++-..++.|+++++++.++++-++
T Consensus       308 --------~~~l~~~f~~~a-~~~gl~~lkGhr-~------vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        308 --------QPRLDTLFKEQS-TEAGFCGLSGHR-S------IGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             --------CHHHHHHHHHHH-HHCCCccccCCc-c------cCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence                    233445667654 556877654432 2      267999999999999999999999887654

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.38  E-value=3e-10  Score=111.22  Aligned_cols=341  Identities=18%  Similarity=0.241  Sum_probs=212.8

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE---EEecccHHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS---ILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~---i~~~sG~~a~  182 (483)
                      ||..-++.+|+ .|.+   +++..+-+.+.+.++  +.+-+..+.+......+.-.-++.+++.+..   ..+++|++++
T Consensus        77 d~~~~~~~vS~~v~~~---~~~~~~l~~~~~~k~--N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~  151 (491)
T KOG1383|consen   77 DGNPRLGLASGVVYWG---EPELDKLIMEAYNKF--NPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG  151 (491)
T ss_pred             CCCcccCeeeEEEecC---CcchhhHHHHHHhhc--CccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence            44444555665 4555   455666666667765  4555555666666777777788888875432   2346777886


Q ss_pred             Hhhhhhh-----c-c--CCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          183 FSAIPCF-----C-K--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       183 ~~ai~~~-----~-~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      ..+-+..     . +  ....|++....|.+..+..+.-+.++..++..      |+....+.+.+          +++.
T Consensus       152 l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~e----------Nti~  221 (491)
T KOG1383|consen  152 LAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDE----------NTIM  221 (491)
T ss_pred             HHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhcc----------ceEE
Confidence            6553332     1 1  12357788889999999888877777766644      44444444433          4888


Q ss_pred             EEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccc-ccCCC-ce-
Q 011567          249 IVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA-LATEG-GF-  324 (483)
Q Consensus       249 iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~-lg~~G-G~-  324 (483)
                      ++.+-.+.++|.+.|.++|.++.-+ |++.+++|.+-++++.. .|-...+.|+..-..+--+..+-+|- |.+.| ++ 
T Consensus       222 lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p-~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~v  300 (491)
T KOG1383|consen  222 LVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINP-AGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWV  300 (491)
T ss_pred             EEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcccccc-ccccCccccccCCCCceeEeeccceeeeeecCcEEE
Confidence            9998888899999999999999999 99999999998877652 11111122333212222333344442 23334 44 


Q ss_pred             eeccHHHHHHHHhcCC--------ceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          325 CTGSARVVDHQRLSSS--------GYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~--------~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      +..+++...++-....        ..+-..|-+....+++.+++-.+-+  ..+..++..++...++++++++.++.+.+
T Consensus       301 l~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~g  380 (491)
T KOG1383|consen  301 LYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVG  380 (491)
T ss_pred             EEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecC
Confidence            3445555444321111        1111223345555666666644432  24577888899999999999999999886


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH-HHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL-VKACESLKR  473 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi-~~~~~~l~~  473 (483)
                      .   |.+.+.+.+...      -...++.+ .|.+.|..+....+        |+++-+|+...++.+++ |+++.-|++
T Consensus       381 k---p~vs~~~~~s~~------~~i~elsd-~l~~~GW~lnalq~--------P~a~Hi~vt~~~~~~~~A~~~v~Di~~  442 (491)
T KOG1383|consen  381 K---PLVSFILFGSND------VNIFELSD-LLRKKGWILNALQF--------PAAIHICVTRVHAREDVADRFVADIRK  442 (491)
T ss_pred             C---CcEEEEEccCCc------cchhhhhH-HHHhcCcCccccCC--------CCceEEEEEeeeccHHHHHHHHHHHHH
Confidence            6   555555433221      11234555 46667887765433        45788999888888884 678888888


Q ss_pred             HHHHHHhc
Q 011567          474 ISAVVLRD  481 (483)
Q Consensus       474 ~~~~~~~~  481 (483)
                      ++.++...
T Consensus       443 ~~~el~~~  450 (491)
T KOG1383|consen  443 VVEELKSL  450 (491)
T ss_pred             HHHHHHhC
Confidence            88887654

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.31  E-value=1.6e-09  Score=101.43  Aligned_cols=286  Identities=15%  Similarity=0.131  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc--cCCcEEEEcCCchhHHH----hH-hhhcCCeEEEecCC
Q 011567          153 IDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQ----NG-LYLSRSTVVYFKHN  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~----~g-~~~s~~~v~~~~~~  223 (483)
                      .++-..|-.+||-+.|..  ++++..+-+-.+...+-+..  .+|+.|++.+...+.+-    .+ +.+.+......-..
T Consensus        75 ~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~  154 (407)
T COG3844          75 FDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVI  154 (407)
T ss_pred             hhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeee
Confidence            456678888899999853  45555444444444443332  23565555554443321    11 12222111111123


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      +++++++.+..          .+++|+..+++-.+|...++.+|-++++++|++++-|=+||.|.+.-         .+.
T Consensus       155 ~P~~~~~~~~d----------d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~---------~Lh  215 (407)
T COG3844         155 APRALEEAITD----------DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPV---------DLH  215 (407)
T ss_pred             ChHHHHHhhcc----------ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcce---------eec
Confidence            55666665543          38899999999999999999999999999999999999999887642         233


Q ss_pred             CCceeEEEcccccccc-CCC--ceeeccHHHHHH--------------------HHhcCCceeecCCCcHHH-HHHHHHH
Q 011567          304 VDKIDIVTAAMGHALA-TEG--GFCTGSARVVDH--------------------QRLSSSGYVFSASLPPYL-ASAAITA  359 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg-~~G--G~i~~~~~~~~~--------------------~~~~~~~~~fs~~~~p~~-~aaa~~a  359 (483)
                      ..++|+-++|-.|-|+ ++|  +++...++..+.                    .........|-.+.+|+. +++...+
T Consensus       216 ~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~a  295 (407)
T COG3844         216 AAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGA  295 (407)
T ss_pred             ccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhh
Confidence            3556999999999994 344  344322222111                    111112223433444544 4555567


Q ss_pred             HHHHhcC--cHHHHHHHHHHHHHHHhhccCC---CceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 011567          360 IDVLEEN--PDLITKLKKNTAILRTGLSDIH---GLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKED  430 (483)
Q Consensus       360 l~~l~~~--~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~  430 (483)
                      |++....  .+++++--.+..+|.+.++...   ++.+..+.    .+.-+.+..+           ...++++. |.++
T Consensus       296 LDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-----------~~~~V~qa-Li~r  363 (407)
T COG3844         296 LDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-----------HGYQVMQA-LIDR  363 (407)
T ss_pred             hhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-----------cHHHHHHH-HHHc
Confidence            8887643  3566666667777777665532   34444321    2333333332           23466665 5567


Q ss_pred             CEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHH
Q 011567          431 GVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       431 Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ||+....         .|.-||+.+ +++.+-+|+-.+++.|.+++.+.
T Consensus       364 GVigD~R---------~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         364 GVIGDFR---------EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             Ccccccc---------CCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence            9876432         134499976 56789999999999999998764

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.28  E-value=2.9e-10  Score=110.90  Aligned_cols=238  Identities=13%  Similarity=0.137  Sum_probs=159.8

Q ss_pred             eEEEeecC---CCCCCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhh
Q 011567          110 EVVNFASA---NYLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA  185 (483)
Q Consensus       110 ~~id~~s~---~~lG~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~a  185 (483)
                      +++|.+..   ..+|=+ -+|+..+++.+.++.+-.- -..+.......-...+.+.++...|.+++.++++.+.|+..+
T Consensus        21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~L-e~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~   99 (395)
T COG1921          21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVEL-ETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLT   99 (395)
T ss_pred             hhhhhhhhheeccCCCccCCHHHHHHHHHHhccccee-eeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHH
Confidence            45555552   344432 4789999999888774210 000000011122236777778888889999999999999999


Q ss_pred             hhhhccCCcEEE-----EcCCchhHHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          186 IPCFCKKGDLIV-----ADEGVHWGIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       186 i~~~~~~gdiI~-----~~~~~h~s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      +.++..++.+|+     ++ ++|+.+.+.++++|++++.+...   ...+++..+.+...        ..+-|..+.|..
T Consensus       100 ~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~ta--------~llkV~s~~~~f  170 (395)
T COG1921         100 LNALAEGKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENTA--------LLLKVHSSNYGF  170 (395)
T ss_pred             HhhhccCCeEEEEcccccc-CCCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCCe--------eEEEEeeccccc
Confidence            999887666655     33 78999999999999999988654   45667777655332        234444444422


Q ss_pred             CCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHH
Q 011567          258 SGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQR  336 (483)
Q Consensus       258 ~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~  336 (483)
                      +| ..++++++++|++||+.+|+|.+-+.-+ .+ -..+.+...   ..+|++++|-.|.|| +.+|+++|++++++.++
T Consensus       171 ~~-~l~~~~l~~ia~~~~lpvivD~aSg~~v-~~-e~~l~~~la---~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq  244 (395)
T COG1921         171 TG-MLSEEELVEIAHEKGLPVIVDLASGALV-DK-EPDLREALA---LGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQ  244 (395)
T ss_pred             cc-cccHHHHHHHHHHcCCCEEEecCCcccc-cc-ccchhHHHh---cCCCEEEEecchhcCCCccceEechHHHHHHHH
Confidence            22 3468889999999999999998754321 11 112222222   345999999999996 66899999999999877


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhc
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      ....+  +..-..+...++..++|+.+..
T Consensus       245 ~~~l~--Ralrv~K~tla~l~~aLe~y~~  271 (395)
T COG1921         245 SHPLK--RALRVDKETLAALEAALELYLQ  271 (395)
T ss_pred             hhhhh--hhhhcCcHhHHHHHHHHHHHcC
Confidence            65443  3333456777777888887765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.23  E-value=3e-09  Score=115.69  Aligned_cols=313  Identities=12%  Similarity=0.163  Sum_probs=185.2

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHH---HHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSA---LEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~---l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      +..|....|.++--+|.|.+.+.+-   +..|  ....|-..-|+.+...++...+++++|.+  ++-++..++++.+++
T Consensus        65 ~~~fig~G~y~~~~p~~i~r~v~~~p~~~Tay--tPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~  142 (939)
T TIGR00461        65 FKSYIGMGYYGTILPPVIQRNLLENPGWYTAY--TPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAM  142 (939)
T ss_pred             ccccCCCCcCCCcCChHHHHHHHhCchhhhcC--CCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHH
Confidence            3455555566664445555455432   2333  12222234456677788999999999988  557888777766666


Q ss_pred             hhhh--c-cCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          186 IPCF--C-KKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       186 i~~~--~-~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      +.+.  . ++++.|++++..|..+..-++    ..|.+++.+   |+++|++.+     +       ++.+++..+ +..
T Consensus       143 ~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~---~~~~l~~~~-----~-------~~~v~~q~P-n~~  206 (939)
T TIGR00461       143 ALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV---DCSDIKKAV-----D-------VFGCLLQYP-ATD  206 (939)
T ss_pred             HHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE---cHHHHhhcC-----C-------EEEEEEECC-CCC
Confidence            5553  2 334789999999988664443    567777776   455554433     1       445544333 335


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCcc-ccccccCCCCccccccCCCCCceeEEEcccccccc-------CCCceeeccHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESN-SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-------TEGGFCTGSAR  330 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~-s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-------~~GG~i~~~~~  330 (483)
                      |.+.++++|.+++++.|.+++++--. +.+.+-+     ...+|     +||+++ .+|.||       +.+||++.+++
T Consensus       207 G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~-----Pge~G-----aDi~vg-~~q~fg~p~g~GGP~aG~~a~~~~  275 (939)
T TIGR00461       207 GSILDYKQLIDALHSHKSLVSVAADLMALTLLTP-----PGHYG-----ADIVLG-SSQRFGVPMGYGGPHAAFFAVKDE  275 (939)
T ss_pred             eEEecHHHHHHHHHHcCCEEEEEechHHhCCcCC-----HHHcC-----CcEEee-CCCccCCCCCCCCCceeeeeecHh
Confidence            99999999999999999999997543 3332221     11223     488864 566665       22378887777


Q ss_pred             HHHHHHhc----------CCceeec-----------CCCcHHHHHHHH----HH--HHHHh-c-CcHHHHHHHHHHHHHH
Q 011567          331 VVDHQRLS----------SSGYVFS-----------ASLPPYLASAAI----TA--IDVLE-E-NPDLITKLKKNTAILR  381 (483)
Q Consensus       331 ~~~~~~~~----------~~~~~fs-----------~~~~p~~~aaa~----~a--l~~l~-~-~~~~~~~l~~~~~~l~  381 (483)
                      +...+...          ..+|..+           -..+....+.++    ++  +.++- + ..++-++...++.++.
T Consensus       276 l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~  355 (939)
T TIGR00461       276 YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILA  355 (939)
T ss_pred             hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            66554210          1122221           011111111111    12  22221 1 1345566777888999


Q ss_pred             HhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          382 TGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       382 ~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      +.|.+ .|+++..++-...+.+.+..         ....++.+++++ +||.++...         ...+++|++-.+|+
T Consensus       356 ~~L~~-~G~~~~~~~fF~~~~v~~~~---------~~~~~i~~~~~~-~gi~l~~~~---------~~~i~~s~~E~~t~  415 (939)
T TIGR00461       356 NGLEN-DPHELINKTWFDTLTVKVGN---------GISSELLKAAEE-FNINLRAVD---------TTTVGIALDETTTK  415 (939)
T ss_pred             HHHHh-CCCcccCCCccceEEEEeCC---------CCHHHHHHHHHH-CCCeeeecC---------CCEEEEEeecCCCH
Confidence            99988 59887644222233444411         013457776555 599976521         13499999999999


Q ss_pred             HHHHHHHHHHH
Q 011567          462 ADLVKACESLK  472 (483)
Q Consensus       462 edi~~~~~~l~  472 (483)
                      +||+.+++++.
T Consensus       416 ~di~~l~~~~~  426 (939)
T TIGR00461       416 ADVENLLKVFD  426 (939)
T ss_pred             HHHHHHHHHhc
Confidence            99999999994

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.20  E-value=4.1e-09  Score=102.01  Aligned_cols=306  Identities=16%  Similarity=0.204  Sum_probs=176.9

Q ss_pred             HHHHHHHHhhhCC---CCEEEecccHHHHHhhhhhhc--------------cCCcEEEEcCCchhHHHhHhhhcC---Ce
Q 011567          157 LDCEARIAKFLGT---PDSILYSYGLSTMFSAIPCFC--------------KKGDLIVADEGVHWGIQNGLYLSR---ST  216 (483)
Q Consensus       157 ~~l~~~La~~~g~---e~~i~~~sG~~a~~~ai~~~~--------------~~gdiI~~~~~~h~s~~~g~~~s~---~~  216 (483)
                      .++-.++.+..|.   .+.|+..+|+-+|.-++.+..              -|.-++++++..|+|+.++....|   ..
T Consensus       144 ~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~  223 (510)
T KOG0629|consen  144 EEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDH  223 (510)
T ss_pred             HHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCce
Confidence            3444455555553   367888999888776654321              144567889999999999998877   45


Q ss_pred             EEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccc-c
Q 011567          217 VVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVL-G  290 (483)
Q Consensus       217 v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~l-g  290 (483)
                      ++.++.+     ++++||+.+.+...+    .....+|-+..-...-|...||+.|+++|++|++|+++|.+.++|.+ .
T Consensus       224 c~~v~t~e~Gkm~~~dLe~kile~k~k----g~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS  299 (510)
T KOG0629|consen  224 CIKVKTDERGKMIPDDLEKKILEAKAK----GGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMS  299 (510)
T ss_pred             eEEecccccCccchHHHHHHHHHHHhc----CCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccC
Confidence            6666654     789999888765432    11245555555455569999999999999999999999999988764 4


Q ss_pred             CCCCccccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeec----------CCCcHHHHHHHH
Q 011567          291 RSGRGLTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFS----------ASLPPYLASAAI  357 (483)
Q Consensus       291 ~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs----------~~~~p~~~aaa~  357 (483)
                      +..|.  ..-|+.  .+|-++-+-+|.+|.   ++.++...+-+..........|.|.          ++.-...|.--.
T Consensus       300 ~k~R~--kl~Gie--ra~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~  375 (510)
T KOG0629|consen  300 RKHRH--KLTGIE--RANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV  375 (510)
T ss_pred             hhhHh--hccCcc--ccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence            33332  223553  347777889999982   2333333233333332222233332          211111121000


Q ss_pred             HHHHHH---h-----cCcHHHHHHHHHHHHHHHhhccCCCceeecC--CCCCEEEEEecCC-----CCCchhh---HHHH
Q 011567          358 TAIDVL---E-----ENPDLITKLKKNTAILRTGLSDIHGLSIASN--PESPIVFLILEKS-----TGSMKND---LQLL  419 (483)
Q Consensus       358 ~al~~l---~-----~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~i~~l~l~~~-----~~~~~~~---~~~~  419 (483)
                      -..+..   +     ..++.+++..+++++|.+.|++..++...-.  +..--++++.-++     ....+.+   ...+
T Consensus       376 D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVa  455 (510)
T KOG0629|consen  376 DVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVA  455 (510)
T ss_pred             cHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhC
Confidence            111111   1     1246788999999999999998777654422  2322233333221     1111111   1223


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHH
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~  475 (483)
                      -.+-.++++++-..+...+....     +.=+|+.+ +...+.+|+|.+++.|..+-
T Consensus       456 PkIK~~Mm~~Gt~Mi~YqPl~~~-----~nffr~v~sn~a~~~ad~dflldEIerlg  507 (510)
T KOG0629|consen  456 PKIKERMMKKGTTMIGYQPLGDK-----PNFFRMVISNPALTEADLDFLLDEIERLG  507 (510)
T ss_pred             cHHHHHHHhccceeeEecccccc-----cchhheecccchhhhhhHHHHHHHHHHhc
Confidence            34556677663333432211111     11156533 34689999999999887653

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.18  E-value=2.8e-11  Score=117.01  Aligned_cols=222  Identities=17%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             ChHHHHHHHHHHHhcCCC----CCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEE-c
Q 011567          125 HEKLLESCTSALEKYGVG----SCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA-D  199 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g----~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~-~  199 (483)
                      ++++.+++.+....|..-    ..|.|+.     -+..+++.++.++|.|+++++++..+|+..++.+++..+.+|+. .
T Consensus        19 ~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~-----R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRG   93 (367)
T PF03841_consen   19 SEEAIEAVAEVASGYSNLEYDLETGKRGS-----RYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRG   93 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467778887777665321    1122221     13457888999999999999999999999999988765444432 1


Q ss_pred             C----CchhHHHhHhhhcCCeEEEecCCC---HHHHHHHHHHhhhhhhhccCccEEE-EEe-cccCCCC--CccChHHHH
Q 011567          200 E----GVHWGIQNGLYLSRSTVVYFKHND---MDSLRNTLERVTADNKRAKKLRRYI-VVE-AVYQNSG--QIAPLDELI  268 (483)
Q Consensus       200 ~----~~h~s~~~g~~~s~~~v~~~~~~d---~~~Le~~l~~~~~~~~~~~~~~~~i-v~e-~v~~~~G--~i~~L~~l~  268 (483)
                      +    +-.+.+.+.+..+|++++.+...+   .+|.|+.+.+   +       ++++ -+. +.|...|  ...++++++
T Consensus        94 elVeiGgsFRip~vm~~sGa~lvEVGttN~t~~~Dye~AI~e---~-------Ta~ll~Vh~Sn~~i~GFt~~~~~~el~  163 (367)
T PF03841_consen   94 ELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHLSDYEKAITE---N-------TAALLKVHTSNFRIQGFTGEVSLEELA  163 (367)
T ss_dssp             -----------------------------------------------------------------------------HHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---c-------ccccccccccccccccccccccHHHHH
Confidence            1    222346677888999998887654   4455555543   2       4444 333 3444334  234799999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccc---cCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHHhcCCceee
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEH---CGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~---~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      +++++|++++|+|-.-+... .-+..|+...   ...-...+|++++|-.|.+| +..|+++|++++++.++.+...  .
T Consensus       164 ~la~~~~lp~i~DlgsG~l~-dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~pl~--R  240 (367)
T PF03841_consen  164 ELAKEHGLPVIVDLGSGLLV-DLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKHPLG--R  240 (367)
T ss_dssp             HHHHHHT--EEEE-TTHHHH-HHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHHHHT--T
T ss_pred             HHHhhcCCcEEEECCCCCCc-CcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhCCCc--c
Confidence            99999999999997542211 0000111110   11112557999999999997 5579999999999998765322  2


Q ss_pred             cCCCcHHHHHHHHHHHHHHh
Q 011567          345 SASLPPYLASAAITAIDVLE  364 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~  364 (483)
                      ..-..-+..++..++|+.+.
T Consensus       241 alrvdK~tla~L~atL~~Y~  260 (367)
T PF03841_consen  241 ALRVDKLTLAALEATLRLYL  260 (367)
T ss_dssp             T-B--HHHHHHHHHHHHH--
T ss_pred             eEeeCHHHHHHHHHHHHHHH
Confidence            22346777787888887654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.18  E-value=4.8e-09  Score=104.90  Aligned_cols=279  Identities=16%  Similarity=0.207  Sum_probs=147.8

Q ss_pred             CcccChHHHHHHHHHHHhhhCCCC--EEEecccHHHHH---hhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEE
Q 011567          148 GFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLSTMF---SAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVV  218 (483)
Q Consensus       148 ~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~a~~---~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~  218 (483)
                      ..-|+.+..-+++..+++++|.+-  +=++..++++-+   .+.+...++++.|++++..|......++    ..+.+++
T Consensus       104 isQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv  183 (429)
T PF02347_consen  104 ISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIV  183 (429)
T ss_dssp             GBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEE
Confidence            345666778899999999999985  456666664444   3344444445689999999988776544    3566777


Q ss_pred             EecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcc--ccccccCCCCcc
Q 011567          219 YFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN--SFGVLGRSGRGL  296 (483)
Q Consensus       219 ~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~--s~g~lg~~G~g~  296 (483)
                      .++.++.....      .+       .++.|++..+.. .|.+.++++|.++++++|.++++ .+.  +.+.+-+     
T Consensus       184 ~~~~~~~~~~d------~~-------~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~-----  243 (429)
T PF02347_consen  184 EVPLDEDGTTD------DD-------DTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKS-----  243 (429)
T ss_dssp             EE-BBTTCSB-------ST-------TEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC-------
T ss_pred             EecccccCCcc------cc-------CeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCC-----
Confidence            77654321111      22       377777776654 49999999999999999999988 543  3332221     


Q ss_pred             ccccCCCCCceeEEEccccccccC---CC----ceeeccHHHHHHHHh----------cCCceeec------------C-
Q 011567          297 TEHCGVPVDKIDIVTAAMGHALAT---EG----GFCTGSARVVDHQRL----------SSSGYVFS------------A-  346 (483)
Q Consensus       297 ~~~~~v~~~~~Di~~~s~~K~lg~---~G----G~i~~~~~~~~~~~~----------~~~~~~fs------------~-  346 (483)
                      ...+|     .||++++ +|.||.   .|    ||++.+++++..+..          ...+|..+            + 
T Consensus       244 Pge~G-----ADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAt  317 (429)
T PF02347_consen  244 PGEYG-----ADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKAT  317 (429)
T ss_dssp             GGGGT------SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCST
T ss_pred             hhhcC-----ccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchh
Confidence            11233     3898765 999972   12    788777776655410          11111100            0 


Q ss_pred             C---CcHHHHH-HHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          347 S---LPPYLAS-AAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       347 ~---~~p~~~a-aa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      |   .+..+++ ++..-+..+  +...++-++...++.++.++|+++.+.++..   .+++-+.+....     + ....
T Consensus       318 SNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~---~~f~e~v~~~~~-----~-~~~~  388 (429)
T PF02347_consen  318 SNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDN---PFFFEFVVVFSK-----D-KEVE  388 (429)
T ss_dssp             T---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSS---SSBSSEEEEESS-------HHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC---CCceeeeeecCC-----c-HHHH
Confidence            0   1222322 222222222  1224677788889999999999863444322   222211111110     1 2223


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      ++.++.+. .|+...   ++.      ...+-+|++-.+|++|||++++++
T Consensus       389 ~l~~~~~~-~gl~~~---~~~------~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  389 ELLKRGIE-GGLNLR---YPD------DGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             HHHHTT-----EEEG---GG-------SSEEEEE--TT--HHHHHHHHH--
T ss_pred             HHHHHHHh-cCCCcc---ccC------CCeEEEEccCCCCHHHHHHHHhcC
Confidence            35554443 353332   221      134889999999999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.11  E-value=1.9e-08  Score=96.91  Aligned_cols=276  Identities=13%  Similarity=0.133  Sum_probs=163.9

Q ss_pred             HHHHHHHHHhh-hCCC---------CEEEecccHHHHHhhhhhh--ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC
Q 011567          156 HLDCEARIAKF-LGTP---------DSILYSYGLSTMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN  223 (483)
Q Consensus       156 ~~~l~~~La~~-~g~e---------~~i~~~sG~~a~~~ai~~~--~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~  223 (483)
                      ..++.+.++++ ||.+         ..+-..+|+.|+..+..-+  ..+...|.++++.......-+...|.++..|++=
T Consensus        71 ~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yy  150 (396)
T COG1448          71 LPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYY  150 (396)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecc
Confidence            34555555555 3422         2344578888888775443  3455568888888777666677788888877753


Q ss_pred             -------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          224 -------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       224 -------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                             |.+.+-..|++..+       ...+++-..-+|+||.-..   +++|.++.++.|.+-++|=+|-+  ++   
T Consensus       151 d~~~~~~df~~mla~L~~a~~-------~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQG--F~---  218 (396)
T COG1448         151 DAETKGLDFDGMLADLKTAPE-------GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQG--FA---  218 (396)
T ss_pred             ccccccccHHHHHHHHHhCCC-------CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhh--hc---
Confidence                   34444444444333       3445555556778887555   79999999999999999999743  22   


Q ss_pred             Cccc-cccC------CCCCceeEEEccccccccCC----Ccee--eccHHHHHHHHhc---CCceeecCCCcHHHHHHHH
Q 011567          294 RGLT-EHCG------VPVDKIDIVTAAMGHALATE----GGFC--TGSARVVDHQRLS---SSGYVFSASLPPYLASAAI  357 (483)
Q Consensus       294 ~g~~-~~~~------v~~~~~Di~~~s~~K~lg~~----GG~i--~~~~~~~~~~~~~---~~~~~fs~~~~p~~~aaa~  357 (483)
                      .|+- +.++      ..+.  -+++.|+||.||.-    |++.  ..+.+..+.....   ..-..||. +|...++.+.
T Consensus       219 ~GleeDa~~lR~~a~~~~~--~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySn-PP~~Ga~vva  295 (396)
T COG1448         219 DGLEEDAYALRLFAEVGPE--LLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSN-PPAHGAAVVA  295 (396)
T ss_pred             cchHHHHHHHHHHHHhCCc--EEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCC-CchhhHHHHH
Confidence            2221 1111      1111  57889999999843    4543  3344443332111   11113432 2333333333


Q ss_pred             HHHH-------HHhcCcHHHHHHHHHHHHHHHhhccC-C--CceeecCCCCCEEEEE-ecCCCCCchhhHHHHHHHHHHH
Q 011567          358 TAID-------VLEENPDLITKLKKNTAILRTGLSDI-H--GLSIASNPESPIVFLI-LEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       358 ~al~-------~l~~~~~~~~~l~~~~~~l~~~L~~~-~--~~~i~~~~~~~i~~l~-l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                      ..|+       +.++...+++++.+++..|.+.|++. +  .+..... +..++... +             ..+-+.++
T Consensus       296 ~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~-Q~GMFsy~Gl-------------s~~QV~rL  361 (396)
T COG1448         296 TILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIIS-QRGMFSYTGL-------------SPEQVDRL  361 (396)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhh-cCceeecCCC-------------CHHHHHHH
Confidence            2331       11233468888999999999999773 1  2444433 33333332 2             11235567


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      .++.||++....             ||++. .+++..|+.++++|.++
T Consensus       362 ree~~IY~v~sG-------------Ri~va-Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         362 REEFGIYLVASG-------------RINVA-GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             HHhccEEEecCC-------------eeeec-cCChhhHHHHHHHHHhh
Confidence            788899987542             78875 48999999999998765

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.09  E-value=3.8e-08  Score=94.44  Aligned_cols=245  Identities=14%  Similarity=0.203  Sum_probs=131.4

Q ss_pred             ccChH-HHHHHHHHHHhhhCCCCEEEe---cccHHHHHhhhhhhccCCcEEEEc-CCchhHHHhHhhhc----------C
Q 011567          150 YGTID-VHLDCEARIAKFLGTPDSILY---SYGLSTMFSAIPCFCKKGDLIVAD-EGVHWGIQNGLYLS----------R  214 (483)
Q Consensus       150 ~g~~~-~~~~l~~~La~~~g~e~~i~~---~sG~~a~~~ai~~~~~~gdiI~~~-~~~h~s~~~g~~~s----------~  214 (483)
                      ||..| -.+.|++-.|+.||.|++++=   .||+.|+..++.++.++||.++.- ..-+-.+.+.+-+.          |
T Consensus        49 YGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G  128 (403)
T PF06838_consen   49 YGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFG  128 (403)
T ss_dssp             T-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred             CCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence            66666 667899999999999999874   899999999999999999988753 33344444444322          2


Q ss_pred             CeEEEecC--C---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-------cChHHHHHHHHHc--CcEEEE
Q 011567          215 STVVYFKH--N---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-------APLDELIRLKEKY--RFRVFL  280 (483)
Q Consensus       215 ~~v~~~~~--~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-------~~L~~l~~l~~k~--~~~li~  280 (483)
                      .....++.  +   |.+.+++.++.          ++++|.+.-   ..|.-       ..+++++++.++.  ++.+++
T Consensus       129 i~Y~~v~L~~dg~~D~~~i~~~~~~----------~tk~v~IQR---SrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifV  195 (403)
T PF06838_consen  129 IKYREVPLTEDGTIDWEAIKKALKP----------NTKMVLIQR---SRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFV  195 (403)
T ss_dssp             -EEEE--B-TTSSB-HHHHHHHHHT----------TEEEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEE
T ss_pred             ceeEEEeecCCCCcCHHHHHHhhcc----------CceEEEEec---CCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEE
Confidence            33333332  1   66667666653          267777643   12322       1256666666655  799999


Q ss_pred             eCccccccccCCCCccccccCCCCCceeEEEcccccccc----CCCceeeccHHHHHHH--HhcCCceeecCCCcHHHHH
Q 011567          281 DESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQ--RLSSSGYVFSASLPPYLAS  354 (483)
Q Consensus       281 DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg----~~GG~i~~~~~~~~~~--~~~~~~~~fs~~~~p~~~a  354 (483)
                      |.+|+.++--      .|--.   -.+|++.||+-|..|    +.|||++|++++++..  |..+.+.--..+...-...
T Consensus       196 DNCYGEFvE~------~EP~~---vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R  266 (403)
T PF06838_consen  196 DNCYGEFVET------QEPTE---VGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNR  266 (403)
T ss_dssp             E-TTTTTTSS------S-GGG---GT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHH
T ss_pred             eCCcceeccc------cCccc---cchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHH
Confidence            9999765421      11111   234999999999996    5689999999999875  3332221111000000011


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC----CCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567          355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE----SPIVFLILEKSTGSMKNDLQLLEDIADWALKE  429 (483)
Q Consensus       355 aa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~  429 (483)
                      .....|-   --|.......+-+......++++ |+++.+...    .-+..+.+.        +.+.+..+++. .++
T Consensus       267 ~~~QGlF---lAP~vV~eAlKgaif~A~~fe~l-G~~v~P~~~~~R~DiIQai~l~--------~~e~l~~FC~~-iQ~  332 (403)
T PF06838_consen  267 LMFQGLF---LAPHVVGEALKGAIFAAALFEKL-GFEVSPKPDDPRSDIIQAIELG--------SPEKLIAFCQG-IQA  332 (403)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT-T-EEES-TTS--SSS-EEEE-S--------SHHHHHHHHHH-HHH
T ss_pred             HHHhHHh---hchHHHHHHHHHHHHHHHHHHHc-CCcCCCCCCCCCCceEEEEECC--------CHHHHHHHHHH-HHh
Confidence            1111111   11334444443444444455555 998875432    337778874        34556677774 443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.09  E-value=2.6e-08  Score=97.37  Aligned_cols=300  Identities=11%  Similarity=0.117  Sum_probs=150.7

Q ss_pred             HHHHHHHhhhCCC---CEEEecccH-HHHHhhhhhh--ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C-----
Q 011567          158 DCEARIAKFLGTP---DSILYSYGL-STMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N-----  223 (483)
Q Consensus       158 ~l~~~La~~~g~e---~~i~~~sG~-~a~~~ai~~~--~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~-----  223 (483)
                      .|...+-+..|..   .+++..-.+ .++..++.++  ..+.+.|+.+...|.+-.+++...|.+++.++.   .     
T Consensus        60 ~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~t  139 (389)
T PF05889_consen   60 SLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELIT  139 (389)
T ss_dssp             HHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEE
T ss_pred             HHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeec
Confidence            3444444556743   466663333 2233333333  356889999999999999999999988776653   2     


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                      |.+++|+.+++..++       ..+.++..+....|..+| +.+|.++|++||+..++..+|+.-.- ..-.-+.+.+..
T Consensus       140 d~~~ie~~i~~~G~~-------~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~-~~~~~i~~a~~~  211 (389)
T PF05889_consen  140 DLEAIEAKIEELGAD-------NILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSS-KCMHLIQQAWRV  211 (389)
T ss_dssp             HHHHHHHHHHHHCGG-------GEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-H-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCC-------CeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHH-HHHHHHHHHHhc
Confidence            578888888776554       466666666666788888 99999999999999999999986000 000000000000


Q ss_pred             CCCceeEEEcccccccc-CCCc-eeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALA-TEGG-FCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNT  377 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg-~~GG-~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~  377 (483)
                        -.+|..+-|..|-|= +.|| .+++. +..++.....-.+   -++..|..=  ....|..+-  ....++....++.
T Consensus       212 --GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpG---Ras~sp~ld--~~itLl~LG~~g~~~ll~~r~~~f  284 (389)
T PF05889_consen  212 --GRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPG---RASASPSLD--LFITLLSLGCTGYGALLKERKASF  284 (389)
T ss_dssp             --STCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHS---HBTSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhh---hhhcccchH--HHHHHHHHhhhHHHHHHHHHHHHH
Confidence              112566668888872 3344 44443 3455555432111   112222211  111111111  1123444444455


Q ss_pred             HHHHHhhccCC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe----eccccccc--CCC
Q 011567          378 AILRTGLSDIH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT----SKRSMLDK--CRL  447 (483)
Q Consensus       378 ~~l~~~L~~~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~----~~~~~~~~--~~~  447 (483)
                      .+++++|+++.   +-.+...+..++ +.+.+..-.....   .....+... |..+||.=.+    .......+  ..+
T Consensus       285 ~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~---k~~~~lgs~-Lf~R~VsG~RvV~~~~~~~tsh~~~yp  360 (389)
T PF05889_consen  285 PYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQ---KDGTFLGSM-LFKRGVSGIRVVTPGGKKQTSHSSNYP  360 (389)
T ss_dssp             HHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS---SHHHHHHHH-HHHTTEESSEEEETSSCEEETTSS--S
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhcc---chhhhHHHH-HHhCCcccceeeccCCCcccccCCCCc
Confidence            55555554321   322332334443 3444432111111   223345554 5556664322    11100001  111


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+-+.++-...+|+||||.+++.|+++++
T Consensus       361 ~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  361 CPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             SSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            24488878889999999999999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.08  E-value=4.9e-08  Score=95.19  Aligned_cols=320  Identities=14%  Similarity=0.162  Sum_probs=189.3

Q ss_pred             eeEEEeecCCCCCCCCChHHHH-HHHHHHHhcCCC----CCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLE-SCTSALEKYGVG----SCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLST  181 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~-a~~~~l~~~g~g----~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a  181 (483)
                      +.+..|....|.++ .-|.+++ .+   +++-++-    ..-|--.-|..+...++...+++++|.+  ++=++..++++
T Consensus        74 ~~~~sfiG~GyY~~-~~P~vI~rni---le~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa  149 (450)
T COG0403          74 KVFTSFIGAGYYDT-YTPPVILRNI---LENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA  149 (450)
T ss_pred             chhhhhccCcccCC-cCcHHHHHHh---hcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHH
Confidence            35556666677777 4455543 33   3332110    1111122233445567788899999976  67788888766


Q ss_pred             HHhhhhhh---ccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCF---CKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      -+++..+.   .++...+++++.+|..+...++    -.|.+++..+.+|.++|++. ...         .+..++++-+
T Consensus       150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~-~~~---------~~~gv~vQyP  219 (450)
T COG0403         150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESA-DDG---------DVFGVLVQYP  219 (450)
T ss_pred             HHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhc-ccc---------CeEEEEEecC
Confidence            66665443   3446789999999998887665    33567888888888888776 221         2677888776


Q ss_pred             cCCCCCccChHHHHHHHHHcCcEEEEe-CccccccccCCCCccccccCCCCCceeEEEcccc-----cccc-CCCceeec
Q 011567          255 YQNSGQIAPLDELIRLKEKYRFRVFLD-ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG-----HALA-TEGGFCTG  327 (483)
Q Consensus       255 ~~~~G~i~~L~~l~~l~~k~~~~li~D-Ea~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~-----K~lg-~~GG~i~~  327 (483)
                      ..-++...++.+|.+.++++|.++++= +..+.+.+-+-|.     +|     .||++|+..     -+|| +..||.+.
T Consensus       220 ~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe-----~G-----ADIvvG~~QrfGvPmgfGGPhag~fA~  289 (450)
T COG0403         220 NTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGE-----FG-----ADIVVGSAQRFGVPMGFGGPHAGYFAV  289 (450)
T ss_pred             CCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccc-----cC-----CceEEecCcccCCCcCCCCcceeeeeE
Confidence            644236667999999999999887765 4556665544221     33     388887642     2223 22377777


Q ss_pred             cHHHHHHH----------------------------Hh-cCCceeecCCCcHHHHHHHHHHHHHHh---cCcHHHHHHHH
Q 011567          328 SARVVDHQ----------------------------RL-SSSGYVFSASLPPYLASAAITAIDVLE---ENPDLITKLKK  375 (483)
Q Consensus       328 ~~~~~~~~----------------------------~~-~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~~~~~l~~  375 (483)
                      +++.+..+                            |. ...+.+.+   +..++|.+.+..-.+.   ...++-.+..+
T Consensus       290 ~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICT---nQaLlA~~As~y~~~hGp~GLk~iA~r~~~  366 (450)
T COG0403         290 KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICT---NQALLALAASMYAVYHGPQGLKEIAERIHR  366 (450)
T ss_pred             hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhH---HHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            76664432                            11 11111111   2222221111111111   12356777888


Q ss_pred             HHHHHHHhhccCC-CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          376 NTAILRTGLSDIH-GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       376 ~~~~l~~~L~~~~-~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      +..++.++|++.. |+.+...  ..+--+.++-       +......+..+.. ..|+-++....         ..+-++
T Consensus       367 ~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~-------~~~~~~~l~~~~~-~~G~~L~~~~~---------~~~~ia  427 (450)
T COG0403         367 LAAYLAAGLKEIGAGVELVFD--HFFDTFTVRV-------PEEVAEALLAAAI-AGGINLRRVDA---------DTVLIA  427 (450)
T ss_pred             HHHHHHHHHhhcCCceEeccc--cceeeEEEec-------chhHHHHHHHHHH-hcCCceeeecC---------CceEEE
Confidence            8999999998653 5666533  3333333321       1123445555544 35888875432         236689


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~  474 (483)
                      +.-..|++||+.+++++...
T Consensus       428 ~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         428 LTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             eecccCHHHHHHHHHHHhhh
Confidence            99999999999999988754

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.02  E-value=8.1e-08  Score=92.81  Aligned_cols=298  Identities=17%  Similarity=0.156  Sum_probs=146.7

Q ss_pred             cChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH-hhh-hh----hc-------cC-CcEEEEcCCchhHHHhHhhhcC
Q 011567          151 GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF-SAI-PC----FC-------KK-GDLIVADEGVHWGIQNGLYLSR  214 (483)
Q Consensus       151 g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~-~ai-~~----~~-------~~-gdiI~~~~~~h~s~~~g~~~s~  214 (483)
                      |..+-..++++..|+++|.+  +.++..+.+-.++ -++ .+    ..       +. .-..+|+-+-+-....-++.-|
T Consensus        66 G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~G  145 (425)
T PF12897_consen   66 GGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFG  145 (425)
T ss_dssp             S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT
T ss_pred             CccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhC
Confidence            44555678999999999965  4555544443222 111 11    11       11 2346677666545444556668


Q ss_pred             CeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CCCccChHHHHHHH----HHcCcEEEEeCccc
Q 011567          215 STVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAPLDELIRLK----EKYRFRVFLDESNS  285 (483)
Q Consensus       215 ~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G~i~~L~~l~~l~----~k~~~~li~DEa~s  285 (483)
                      .+.+.++.+    ||+.+|++..+..        .++-|++-|.|+| +|....-+.+++|+    ...+++++-|.+|+
T Consensus       146 iemi~VpM~~dGPDmD~Ve~LV~~D~--------svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~  217 (425)
T PF12897_consen  146 IEMIPVPMTEDGPDMDMVEELVAEDP--------SVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYA  217 (425)
T ss_dssp             -EEEEEEEETTEE-HHHHHHHTHTST--------TEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTT
T ss_pred             cEEEecCCCCCCCCHHHHHHHHhcCC--------ccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCce
Confidence            888888754    8999999987644        2788999998876 88887755444544    35699999999998


Q ss_pred             cccc-cCCCCc-------cccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcCCceeecC-CCcHHHHH
Q 011567          286 FGVL-GRSGRG-------LTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSSSGYVFSA-SLPPYLAS  354 (483)
Q Consensus       286 ~g~l-g~~G~g-------~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~a  354 (483)
                      +-.+ +..-+-       .++..|- |+. -++.+|.||-- .+.| +|++++..-+++++......+-+. -+|.+--+
T Consensus       218 vHhL~~~~~~~~~~nil~~~~~AGn-pdr-v~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHv  295 (425)
T PF12897_consen  218 VHHLYDEEPRDALLNILDACAKAGN-PDR-VYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHV  295 (425)
T ss_dssp             T-BSSSSSS------HHHHHHHTT--TTS-EEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHH
T ss_pred             EeeccccccchhhhHHHHHHHHcCC-CCe-EEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHH
Confidence            7665 322111       1222332 233 46678999976 3333 678888877776543311111110 01221111


Q ss_pred             HHHHHHHHHhcCc-HHHHHHHH-----------HHHHHHHhhc-cCCCc-eeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          355 AAITAIDVLEENP-DLITKLKK-----------NTAILRTGLS-DIHGL-SIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       355 aa~~al~~l~~~~-~~~~~l~~-----------~~~~l~~~L~-~~~~~-~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                            +++.+.+ .+.++.++           ..+.|.+.|. .. ++ .-..+.++.++.+...+.         .+.
T Consensus       296 ------rff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GGYFIsld~~~G---------~Ak  359 (425)
T PF12897_consen  296 ------RFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGGYFISLDVLDG---------TAK  359 (425)
T ss_dssp             ------HHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBSS-EEEEESTT----------HH
T ss_pred             ------HHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCceEEEEecCCC---------hHH
Confidence                  1222111 22222222           2334444554 22 22 333455777888887432         245


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCC--CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLP--VGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~--~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++++. .++.||.+++... +.+....|  ..|||+|+. -+.+|++.+++.+.-+++-
T Consensus       360 rvV~l-akeAGV~LT~AGA-tfPyg~DP~D~nIRiAPS~-P~leel~~Am~~~~~cv~l  415 (425)
T PF12897_consen  360 RVVEL-AKEAGVALTPAGA-TFPYGKDPRDSNIRIAPSY-PSLEELETAMDVFATCVKL  415 (425)
T ss_dssp             HHHHH-HHHTTEE---TTT-TSGGG--TTS-EEEE--SS-S-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHhCceeCCCCC-CCCCCCCCCCCcEEecCCC-CCHHHHHHHHHHHHHHHHH
Confidence            67764 4567999998543 11111112  239999876 6899999999999887653

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.02  E-value=4.6e-07  Score=89.02  Aligned_cols=302  Identities=14%  Similarity=0.110  Sum_probs=173.8

Q ss_pred             hHHHHHHHHH----HHhhhCC-----------CCEEEecccHHHHHhhhhhhc-------cC------------CcEEEE
Q 011567          153 IDVHLDCEAR----IAKFLGT-----------PDSILYSYGLSTMFSAIPCFC-------KK------------GDLIVA  198 (483)
Q Consensus       153 ~~~~~~l~~~----La~~~g~-----------e~~i~~~sG~~a~~~ai~~~~-------~~------------gdiI~~  198 (483)
                      .+...+||.-    |+++++.           .-.++..|.++++..++-+..       +.            .=++++
T Consensus       108 sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~  187 (511)
T KOG0628|consen  108 SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC  187 (511)
T ss_pred             CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence            3455667744    4444442           246777888888766643211       11            236788


Q ss_pred             cCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC-CCCCccChHHHHHHHH
Q 011567          199 DEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSGQIAPLDELIRLKE  272 (483)
Q Consensus       199 ~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G~i~~L~~l~~l~~  272 (483)
                      .+..|.++.+++.+.+.+.+.++..     +.+.|++.+++..+.    + -+-++++-.+-+ +.-...+|.+|..+|+
T Consensus       188 SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~ar----G-lIPf~v~at~GTT~~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  188 SDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIAR----G-LIPFFVCATLGTTSSCAFDELEELGPVCR  262 (511)
T ss_pred             cCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhC----C-CccEEEEEeecCccccccccHHHhcchhh
Confidence            9999999999999999988777644     567888888765442    1 233444433322 2234456999999999


Q ss_pred             HcCcEEEEeCccccccccC-CCCccccccCCCCCceeEEEccccccccC---CC------ceee-----ccHHHHHHHH-
Q 011567          273 KYRFRVFLDESNSFGVLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALAT---EG------GFCT-----GSARVVDHQR-  336 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg~---~G------G~i~-----~~~~~~~~~~-  336 (483)
                      ++|+||++|.+|++..+.- .-|++.  -|+  +.+|-+-...+|++-.   +.      |+-+     .++...+|-. 
T Consensus       263 ~~glWLHVDAAYAGsa~iCpE~r~l~--rGi--e~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~  338 (511)
T KOG0628|consen  263 EEGLWLHVDAAYAGSAFICPEFRYLM--RGI--EYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ  338 (511)
T ss_pred             hcCEEEEeehhhccccccCHHHHHHh--hcc--hhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence            9999999999998654321 111111  133  3346666677887731   11      2100     1111111110 


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHH------HHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          337 LSSSGYVFSASLPPYLASAAITAI------DVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al------~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      .....|.+-.  -|+.  --..+|      +.+--  ..+.+.+..++++.|.+.+.+-+.+++.....-.++++++++.
T Consensus       339 ~~~~Dyrhwq--ipl~--rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~  414 (511)
T KOG0628|consen  339 GSAPDYRHWQ--IPLG--RRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD  414 (511)
T ss_pred             ccCCCccccc--cccc--cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC
Confidence            1111111110  0111  011122      22211  1223344445666777666665678887666667888998653


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC-CCHHHHHHHHHHHHHHHHHHHh
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA-HSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~-~t~edi~~~~~~l~~~~~~~~~  480 (483)
                             ......+.+++-..+.|.+.+.....  +    --||+++.+. .+++|++++.+.|.+...+++.
T Consensus       415 -------N~~ne~Ll~~in~~g~i~l~~~~l~g--k----~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~  474 (511)
T KOG0628|consen  415 -------NEINEALLNRLNSSGRIHLVPASLHG--K----FVLRFAVCSPLTNESDIDEAWKIIFEAADELFE  474 (511)
T ss_pred             -------cHHHHHHHHHHHhcCcEEEEEeeecc--e----EEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence                   33455677766666778887654311  0    1199998664 5788999999999998887553

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.01  E-value=2.8e-07  Score=88.56  Aligned_cols=333  Identities=16%  Similarity=0.229  Sum_probs=180.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEeccc-HHHHHhhhhhhc-cCCcEE
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILYSYG-LSTMFSAIPCFC-KKGDLI  196 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~~sG-~~a~~~ai~~~~-~~gdiI  196 (483)
                      ..+++.+...|...|    |+-+.|..+.-..-+++.+|++.    |.   ++-|+.++| +.|+...+..++ ++++-|
T Consensus        89 ~Dai~RA~~~L~~~g----Gs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~Gv  164 (475)
T KOG0258|consen   89 TDAIKRAKRILNDCG----GSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGV  164 (475)
T ss_pred             HHHHHHHHHHHHhcC----CcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCce
Confidence            345566666666533    23334544444455566666664    42   233455544 577888877764 466777


Q ss_pred             EEcCCchhHHHhHhhhcCCeEEEe--c-----CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHH
Q 011567          197 VADEGVHWGIQNGLYLSRSTVVYF--K-----HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDE  266 (483)
Q Consensus       197 ~~~~~~h~s~~~g~~~s~~~v~~~--~-----~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~  266 (483)
                      +++-+-+.-+-..+.+.+...+.+  +     .-|.++|++.+++..+.    -..+++||++|- |++|.+..   +++
T Consensus       165 liPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~----i~~r~lvvINPG-NPTGqvls~e~ie~  239 (475)
T KOG0258|consen  165 LIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKG----INPRALVVINPG-NPTGQVLSEENIEG  239 (475)
T ss_pred             EeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhcc----CCceEEEEECCC-CccchhhcHHHHHH
Confidence            777665554444455555544332  2     12788999988776532    124666777664 56787765   899


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCcc-----ccccC-CCCCceeEE-Eccccccc----cCCCcee--ec-cHHHH
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGL-----TEHCG-VPVDKIDIV-TAAMGHAL----ATEGGFC--TG-SARVV  332 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-----~~~~~-v~~~~~Di~-~~s~~K~l----g~~GG~i--~~-~~~~~  332 (483)
                      |.+.|.++|+.|+.||+|---++...-+..     .-+.| -.++.+.+. ..|.||++    |..|||+  ++ ++++.
T Consensus       240 i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~  319 (475)
T KOG0258|consen  240 IICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVK  319 (475)
T ss_pred             HHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHH
Confidence            999999999999999998655554321211     11112 112333332 46778988    3567885  22 33333


Q ss_pred             HHHHhc-CCceeecC---------CCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 011567          333 DHQRLS-SSGYVFSA---------SLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV  401 (483)
Q Consensus       333 ~~~~~~-~~~~~fs~---------~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~  401 (483)
                      +.+... +...+-..         -.||.-   +....+.. .+.+.+.+.++++++.+.+.+++++|+.+... ++.+.
T Consensus       320 ~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~P---gd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~-qGAMY  395 (475)
T KOG0258|consen  320 QQIKKLASIKLCPQVSGQKLVDLVVNPPKP---GDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPV-QGAMY  395 (475)
T ss_pred             HHHHHHHhhhhcCCccchhhhceecCCCCC---CCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccC-cccee
Confidence            332111 00000000         001100   01111111 12246888899999999999999999988754 55554


Q ss_pred             EE-EecCCCCCchhhHHH----HHHHHHHHHHhCCEEEEeecccccccCCCCCc---eEEEccCCCCHHHHHHHHHHHHH
Q 011567          402 FL-ILEKSTGSMKNDLQL----LEDIADWALKEDGVFVVTSKRSMLDKCRLPVG---IRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       402 ~l-~l~~~~~~~~~~~~~----~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~---lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .+ ++.-+....+.....    -.-.+.++|+..||.+.|+....-     ++|   +|.++=+.   . + ..++.+++
T Consensus       396 ~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ-----~~GtyH~R~TiLp~---~-~-~~i~~~~~  465 (475)
T KOG0258|consen  396 LFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQ-----KEGTYHFRTTILPP---G-L-EIIEKFKK  465 (475)
T ss_pred             ecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCC-----CCceeEEEEeecCc---h-h-HHHHHHHH
Confidence            44 221111000000000    012456788889999998765432     233   78765322   2 3 55666666


Q ss_pred             HHHHHHhc
Q 011567          474 ISAVVLRD  481 (483)
Q Consensus       474 ~~~~~~~~  481 (483)
                      +=++.+.+
T Consensus       466 fH~~f~~~  473 (475)
T KOG0258|consen  466 FHAEFMDE  473 (475)
T ss_pred             HHHHHHHh
Confidence            65555544

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.92  E-value=2.7e-07  Score=93.62  Aligned_cols=303  Identities=16%  Similarity=0.169  Sum_probs=180.5

Q ss_pred             cChHHHHHHHHHHHhhhCCCCEEEe-cccHHH---HHhhhhhhc-----cCCcEEEEcCCchhHHHhHhhhcCCeEEEec
Q 011567          151 GTIDVHLDCEARIAKFLGTPDSILY-SYGLST---MFSAIPCFC-----KKGDLIVADEGVHWGIQNGLYLSRSTVVYFK  221 (483)
Q Consensus       151 g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a---~~~ai~~~~-----~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~  221 (483)
                      |..++..+|++.|++..|.+..-+- ++|.+.   -..+|+++.     +...+-+.+-+.|+.-....++.|.+++.+.
T Consensus       579 GY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~  658 (1001)
T KOG2040|consen  579 GYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVG  658 (1001)
T ss_pred             hHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEee
Confidence            4456778999999999999876665 788654   345577764     2234677888999998888899999998876


Q ss_pred             CC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567          222 HN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       222 ~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g  295 (483)
                      ..     |+.+|+...+++.++       .+++++.-... .|...+ +++++++.++||--+.+|.+.--...|-+..|
T Consensus       659 ~~~~G~id~~dLk~kaekh~~~-------Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pG  730 (1001)
T KOG2040|consen  659 CDANGNIDMVDLKAKAEKHKDN-------LAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPG  730 (1001)
T ss_pred             ccCCCCccHHHHHHHHHHhhhh-------hheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCc
Confidence            32     899999888887765       56665543333 377666 99999999999999999998643223321111


Q ss_pred             cccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------------CCceeecCCCcHHH----HHH
Q 011567          296 LTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------------SSGYVFSASLPPYL----ASA  355 (483)
Q Consensus       296 ~~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------------~~~~~fs~~~~p~~----~aa  355 (483)
                         .+|-     |+.--.++|+|+.   .||=-+|+=-+-.|+..+             ...-.-+-+..|+.    ...
T Consensus       731 ---d~Ga-----DV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpI  802 (1001)
T KOG2040|consen  731 ---DIGA-----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPI  802 (1001)
T ss_pred             ---cccc-----cceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehh
Confidence               1232     5555589999962   122222222222222111             00000111111222    222


Q ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCE
Q 011567          356 AITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV  432 (483)
Q Consensus       356 a~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv  432 (483)
                      ..+-++.+-..  ++.-+-..-|+.|+.++|+..  +++. ....+.+-|-.+-+..+.+....-.+.+++++++ ++|+
T Consensus       803 SwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~-DYgF  879 (1001)
T KOG2040|consen  803 SWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLM-DYGF  879 (1001)
T ss_pred             HHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHH-hccC
Confidence            23344544321  222233344677888999764  4432 2333433322221111111111123557888754 5788


Q ss_pred             EEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          433 FVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       433 ~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ......+|.      ++.|-|-|+-.-+++|+|++++++-.+-.++
T Consensus       880 HaPTmswPV------~gtLMIEPTESE~k~ElDRfcdAliSIreEI  919 (1001)
T KOG2040|consen  880 HAPTMSWPV------AGTLMIEPTESEDKAELDRFCDALISIREEI  919 (1001)
T ss_pred             CCCcccccc------CCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence            876666653      4558899998899999999999987665443

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.85  E-value=2.6e-06  Score=81.27  Aligned_cols=347  Identities=19%  Similarity=0.231  Sum_probs=189.3

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      +.-+||+.+-+--|-..+     .-..++-+..-...|+|.+       ..|++...+.+|.+..+-...|-.|=...++
T Consensus        45 edv~IDLLTDSGTgams~-----~qwaamm~GDEAYagsrs~-------~~L~~avkdifGfq~~iPthQGRgAE~Il~~  112 (471)
T COG3033          45 EDVFIDLLTDSGTGAMTD-----KQWAAMMRGDEAYAGSRSY-------YALADAVKDIFGFQYTIPTHQGRGAENILIP  112 (471)
T ss_pred             cceEEEeeccCCcccccH-----HHHHHHhccchhhcccccH-------HHHHHHHHHhcCceeeeeccCCccHHHHHHH
Confidence            346788887543343222     2222333322334455544       4688899999998888888888766444444


Q ss_pred             hhcc-----CCcEEEEcCCchhHHHhH-hhhcCCeEE--------------EecCC-CHHHHHHHHHHhhhhhhhccCcc
Q 011567          188 CFCK-----KGDLIVADEGVHWGIQNG-LYLSRSTVV--------------YFKHN-DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       188 ~~~~-----~gdiI~~~~~~h~s~~~g-~~~s~~~v~--------------~~~~~-d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      .+.+     +|...+....+|+.+..+ .+..|+..+              .|+-| |++.|++++.+...+      .+
T Consensus       113 i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~------nv  186 (471)
T COG3033         113 ILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD------NV  186 (471)
T ss_pred             HHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc------cC
Confidence            4443     444455556667654443 444554432              22222 889999999987765      34


Q ss_pred             EEEEEe-cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccc----cccccCCCCccccccCCC------CCceeEEEc
Q 011567          247 RYIVVE-AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNS----FGVLGRSGRGLTEHCGVP------VDKIDIVTA  312 (483)
Q Consensus       247 ~~iv~e-~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s----~g~lg~~G~g~~~~~~v~------~~~~Di~~~  312 (483)
                      .+|++. ..++.+|....   ++++.++|+||++.++.|.+.-    .++ -..-.|.- ++.+.      -.-.|-.+-
T Consensus       187 p~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFI-k~rE~gYr-d~sI~~IarEm~sYaD~~~m  264 (471)
T COG3033         187 PYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFI-KQREPGYR-DWSIEEIAREMYSYADGCTM  264 (471)
T ss_pred             cEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhh-hhcCcccc-cccHHHHHHHHHhhhhhhee
Confidence            444332 33344565443   7999999999999999998631    111 11111110 01110      001133333


Q ss_pred             cccc-cccCCCceeeccHH----HHHHHHhcC---Cce-eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          313 AMGH-ALATEGGFCTGSAR----VVDHQRLSS---SGY-VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       313 s~~K-~lg~~GG~i~~~~~----~~~~~~~~~---~~~-~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |.-| ++...|||++-+++    +...++...   -++ +|+ ++..-.+.+....|..--+.+ .+++--+..++|.++
T Consensus       265 S~KKD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYG-gl~GrdmealAvGL~e~~~~~-yl~~Rv~Qv~YL~~~  342 (471)
T COG3033         265 SAKKDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYG-GLAGRDMEALAVGLREGVNFD-YLAHRVAQVQYLADG  342 (471)
T ss_pred             eccccceeccccEEEecCccHHHHHHHHHhheEeeccccccC-cccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHH
Confidence            3333 33467899876554    444444321   111 222 222222222222333222223 444445567889999


Q ss_pred             hccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc------ccCCCCC--ceEEEc
Q 011567          384 LSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML------DKCRLPV--GIRLFV  455 (483)
Q Consensus       384 L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~------~~~~~~~--~lRi~~  455 (483)
                      |.+. |++++.+.++.-+++....-......+.--++.++.++.++.||-..-......      ++..+|+  -+|+++
T Consensus       343 l~~~-GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRlti  421 (471)
T COG3033         343 LEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTI  421 (471)
T ss_pred             HHhc-CCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEec
Confidence            9886 999887777887777643211111122223456666677777886653322111      1111222  399987


Q ss_pred             cC-CCCHHHHHHHHHHHHHHHHH
Q 011567          456 SA-AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       456 ~~-~~t~edi~~~~~~l~~~~~~  477 (483)
                      +- ..|.+++|.++++++++.+.
T Consensus       422 pRrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         422 PRRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             cccccchhHHHHHHHHHHHHHhc
Confidence            65 56999999999999887654

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.78  E-value=1.7e-06  Score=94.07  Aligned_cols=309  Identities=15%  Similarity=0.126  Sum_probs=175.0

Q ss_pred             EEEeecCCCCCCCCChHHH-HHHHH---HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          111 VVNFASANYLGLIGHEKLL-ESCTS---ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~-~a~~~---~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      +..|....|.++ --|.++ +.+.+   .+..|.  ...|-..-|+.+...++...+++++|.+  .+=++..++++-++
T Consensus        80 ~~~fiG~G~y~~-~~P~vi~~~i~~~~~~yTaYT--PYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA  156 (954)
T PRK12566         80 WTSLIGMGYHGT-VTPTVILRNVLENPGWYTAYT--PYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEA  156 (954)
T ss_pred             ccccccccccCC-cCcHHHHHHHHhCchhhhcCC--CCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHH
Confidence            445555556666 334443 44432   122231  1122224456667788999999999988  66788777655443


Q ss_pred             hh---hhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          185 AI---PCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       185 ai---~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      +.   +...++...+++++..|..+..-++    ..|.+++.      +++++.+.+          .++.|++..+. .
T Consensus       157 ~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~----------~~~~v~vq~P~-~  219 (954)
T PRK12566        157 MALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAH----------AVFGALLQYPD-T  219 (954)
T ss_pred             HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCC----------CEEEEEEECCC-C
Confidence            33   3222235678899999988765443    34455553      344443211          25666664433 3


Q ss_pred             CCCccChHHHHHHHHHcCcEEEEe-CccccccccCCCCccccccCCCCCceeEEEcccccccc-------CCCceeeccH
Q 011567          258 SGQIAPLDELIRLKEKYRFRVFLD-ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-------TEGGFCTGSA  329 (483)
Q Consensus       258 ~G~i~~L~~l~~l~~k~~~~li~D-Ea~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-------~~GG~i~~~~  329 (483)
                      .|.+.++++|.+++++.|.++++- +..+.+.+-+-|     .+|     .||++| -++.||       +..||++.++
T Consensus       220 ~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~~Pg-----e~G-----ADI~vG-~~Q~fGvp~~~GGP~ag~~a~~~  288 (954)
T PRK12566        220 HGEIRDLRPLIDQLHGQQALACVAADLLSLLVLTPPG-----ELG-----ADVVLG-STQRFGVPMGYGGPHAAYFACRD  288 (954)
T ss_pred             ceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCCChh-----hcC-----CcEEee-CCCcCCCCCCCCCCCeeeeeehH
Confidence            499999999999999999987643 234555443211     233     388876 355554       1237888877


Q ss_pred             HHHHHHHhc----------CCceeec------------CC----CcHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHH
Q 011567          330 RVVDHQRLS----------SSGYVFS------------AS----LPPYLASAAITAIDVLEEN----PDLITKLKKNTAI  379 (483)
Q Consensus       330 ~~~~~~~~~----------~~~~~fs------------~~----~~p~~~aaa~~al~~l~~~----~~~~~~l~~~~~~  379 (483)
                      +++..+...          ..+|.-+            ++    .+..++|.+ +++-..-..    .++-++...++.+
T Consensus       289 ~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~-a~~Y~~~~Gp~Gl~~ia~~~~~~a~~  367 (954)
T PRK12566        289 DYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANI-AGFYAVYHGPEGLKRIAQRVHRLTAI  367 (954)
T ss_pred             HHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            765553110          1111000            00    122222222 122211112    2345567778889


Q ss_pred             HHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          380 LRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       380 l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      +.+.|.+ .|+++...  ..+--+.+.-  +.      ...++..++++ .|+.++....         ..+.+++.-.+
T Consensus       368 l~~~l~~-~g~~~~~~--~fF~~~~v~~--~~------~~~~~~~~a~~-~~~n~r~~~~---------~~~~~s~de~~  426 (954)
T PRK12566        368 LAAGLEA-KGIKRLNR--HFFDTLTLEV--GG------AQAAIIESAEA-ARINLRILGR---------GRLGVSLDETC  426 (954)
T ss_pred             HHHHHHh-cCCccccC--CccceEEEEc--cC------CHHHHHHHHHH-CCCeeEEeCC---------CeEEEEeCCCC
Confidence            9999988 58887533  2232233321  10      13356666665 4898876421         23789999999


Q ss_pred             CHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLK  472 (483)
Q Consensus       460 t~edi~~~~~~l~  472 (483)
                      |++|++.+++++.
T Consensus       427 ~~~~~~~~~~~f~  439 (954)
T PRK12566        427 DEATVARLFDIFL  439 (954)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999999984

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.62  E-value=4.4e-06  Score=77.84  Aligned_cols=244  Identities=16%  Similarity=0.214  Sum_probs=138.0

Q ss_pred             cccChH-HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcCC-chhHHHhHhhhc----------
Q 011567          149 FYGTID-VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADEG-VHWGIQNGLYLS----------  213 (483)
Q Consensus       149 ~~g~~~-~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~~-~h~s~~~g~~~s----------  213 (483)
                      -||..| -...|++-.|+.||.|.+++   +-||+.|+..|+-.+.++||.++.--. -+....+-+-+.          
T Consensus        59 GYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~df  138 (416)
T COG4100          59 GYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDF  138 (416)
T ss_pred             CCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHh
Confidence            367666 56779999999999998765   489999999999999999997764322 232332222111          


Q ss_pred             CCeEEEec--CC---CHHHHHHHHHHhhhhhhhccCccEEEEEecc--cC--CCCCccChHHHHHHHHHc--CcEEEEeC
Q 011567          214 RSTVVYFK--HN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAV--YQ--NSGQIAPLDELIRLKEKY--RFRVFLDE  282 (483)
Q Consensus       214 ~~~v~~~~--~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v--~~--~~G~i~~L~~l~~l~~k~--~~~li~DE  282 (483)
                      +.....++  .+   |.+.++..+.   +       .+++|-+.--  |.  ++=.+..+++++++.++-  ++++++|.
T Consensus       139 gi~Y~~v~Lt~~gkiD~~~v~~~i~---~-------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDN  208 (416)
T COG4100         139 GIKYKAVPLTADGKIDIQAVKTAIS---D-------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDN  208 (416)
T ss_pred             CcceeecccccCCcccHHHHHHhcC---c-------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEec
Confidence            11112222  11   5555555443   3       3677766432  11  111223367777777765  79999999


Q ss_pred             ccccccccCCCCccccccCCCCCceeEEEcccccccc----CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567          283 SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       283 a~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg----~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~  358 (483)
                      +|+.++--.      |-..   -.+|++.||+-|..|    ..|||++|++++++...     |.-++..-.--+.|.+-
T Consensus       209 CYGEFvE~~------EPt~---vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~-----yRlTaPGIG~e~Gat~~  274 (416)
T COG4100         209 CYGEFVEEK------EPTH---VGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA-----YRLTAPGIGREGGATLY  274 (416)
T ss_pred             cchhhhhcc------Cccc---cchhhhccceeeCCCCceeeccceeechHHHHHhhc-----eeeecCCccccccccHH
Confidence            997654211      1111   234999999999997    35899999999998742     22221100001111222


Q ss_pred             HHHHH-hc---CcHHHHHHHHHHHHHHHhhccCCCceeecCCCC----CEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          359 AIDVL-EE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPES----PIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       359 al~~l-~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~----~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      ++..+ +.   -|....+..+-+......|.++ |+++.+....    -+..+.+.        +.+.+-.+++.
T Consensus       275 ~l~~myqGlFlAPhvv~qa~Kga~fta~~le~l-g~~~~P~~~~kRtDlIQavkf~--------~~eKmIaFcqa  340 (416)
T COG4100         275 SLREMYQGLFLAPHVVSQAVKGAHFTARFLEKL-GFPVNPKYDAKRTDLIQAVKFG--------SKEKMIAFCQA  340 (416)
T ss_pred             HHHHHHhhhccchHHHHHHhhhhHHHHHHHHHc-CCCCCCcccccccchhhheecC--------CHHHHHHHHHH
Confidence            22222 21   2455555554444444555555 7776543332    25556653        33445556653

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.47  E-value=5.8e-05  Score=72.90  Aligned_cols=321  Identities=16%  Similarity=0.186  Sum_probs=176.6

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCC----CCCCcccChHHHHHHHHHHHhhhCCCC--EEEe-cccH-HH
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKY-GVGSC----GPRGFYGTIDVHLDCEARIAKFLGTPD--SILY-SYGL-ST  181 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~----~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~-~sG~-~a  181 (483)
                      ..||+++-.   .-+|++.+.+.+-+..+ |.|.+    +.|.-. -..++.+.++.+.++++.++  -|+| .+|. ..
T Consensus         6 ~~nFsaGPa---~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~-~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~q   81 (365)
T COG1932           6 VYNFSAGPA---ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKE-FKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQ   81 (365)
T ss_pred             CCCCCCCcc---cCCHHHHHHHHHHHhhhccCCcceeeeccccHH-HHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHH
Confidence            456666411   13577777777766653 32211    111111 12477888999999998653  4444 4443 44


Q ss_pred             HHhhhhhhcc-CCc-EEEEcCCchhHHHhHhhhcC-CeE-----EEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          182 MFSAIPCFCK-KGD-LIVADEGVHWGIQNGLYLSR-STV-----VYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       182 ~~~ai~~~~~-~gd-iI~~~~~~h~s~~~g~~~s~-~~v-----~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ...+...+.+ ++. .|..-.-..++...+-.... .++     ...++...-++...-  ..+       ..+.|...+
T Consensus        82 f~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-------~~ayv~~~~  152 (365)
T COG1932          82 FAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-------NDAYVHFCW  152 (365)
T ss_pred             HHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCC-------CccEEEEec
Confidence            4444444443 332 34433333334433333332 111     111111111111100  110       134455555


Q ss_pred             ccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          254 VYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       254 v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      .-..+|.-.| ++.+.   .  +.++++|-+-.+  +++         .++-.+.|++.++--|.+|+.| +.++-++++
T Consensus       153 NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~i--lsr---------~iDvsk~dviyagaQKnlGpaGltvvIvr~~~  216 (365)
T COG1932         153 NETISGVEVPELPDIG---S--DGLLVADASSAI--LSR---------PIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDL  216 (365)
T ss_pred             CCcccceEccCCCCCC---C--CceEEEecccHH--hcC---------CCChhHcceEEEehhhccCccceEEEEEcHHH
Confidence            4445566544 23221   1  178999987654  332         2334667999999999999888 556677777


Q ss_pred             HHHHHhc------------CCceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCce--eec
Q 011567          332 VDHQRLS------------SSGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLS--IAS  394 (483)
Q Consensus       332 ~~~~~~~------------~~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~--i~~  394 (483)
                      +++.+..            ..+-+|.+ +|.++......++++++..   +.+.++.+++.+.|.+.+.+.+-+.  +..
T Consensus       217 l~r~~~~~~P~if~y~~~~~~~s~yNT-Pptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~  295 (365)
T COG1932         217 LERAESYTLPSIFDYLTHADNGSMYNT-PPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAK  295 (365)
T ss_pred             HhcccccCCchHhhchhhhccCCccCC-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccch
Confidence            7665432            11122332 2334444555678888753   5788889999999999998753221  222


Q ss_pred             CCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          395 NPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       395 ~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ..+|.+ +++.+.        +.+....++.++.++ |+..-.++.       .++|+|+++...+..++++.+++.++.
T Consensus       296 ~~RS~mnV~f~~~--------~~~ld~~fv~eae~~-gl~~lkGhr-------~vgGmRasiynA~~~e~veaL~~fm~~  359 (365)
T COG1932         296 ANRSRMNVTFTLV--------DAELDKGFVAEAEAA-GLIYLKGHR-------SVGGLRASIYNAVPLEDVEALTDFMDW  359 (365)
T ss_pred             hhccceeEEEEcC--------cHHHHHHHHHHHHHc-CCceecccc-------CCCceeeeeecCCCHHHHHHHHHHHHH
Confidence            234443 455553        334445677765554 555544321       247799999999999999999999988


Q ss_pred             HHHH
Q 011567          474 ISAV  477 (483)
Q Consensus       474 ~~~~  477 (483)
                      +.++
T Consensus       360 f~~~  363 (365)
T COG1932         360 FEET  363 (365)
T ss_pred             HHHh
Confidence            7654

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.34  E-value=0.00015  Score=68.01  Aligned_cols=329  Identities=18%  Similarity=0.233  Sum_probs=182.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCcccChH---HHHHHHHHHHhhhCCC-CEE-EecccHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP-RGFYGTID---VHLDCEARIAKFLGTP-DSI-LYSYGLS  180 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~-~~~~g~~~---~~~~l~~~La~~~g~e-~~i-~~~sG~~  180 (483)
                      +.+..|=++ +|.||+ .+....+.+.+.++++.-  |+. ..+.|..+   .-+-.-..++...|.. +.+ ++++=+.
T Consensus        64 ~d~~~iYlc-GNSLGL-mPK~t~~~~~~eLDkWak--~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTv  139 (465)
T KOG3846|consen   64 DDKPVIYLC-GNSLGL-MPKSTRNSINAELDKWAK--CAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTV  139 (465)
T ss_pred             CCCCeEEEe-cccccc-CchhhHhHHHHHHHHHHh--hhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhh
Confidence            345555555 467899 456667777777776321  000 00222222   1233445677777753 333 3444443


Q ss_pred             HHHhhhhhhccCC---cEEEEcC----CchhHHHhHhhhcCCeE----EEecCC------CHHHHHHHHHHhhhhhhhcc
Q 011567          181 TMFSAIPCFCKKG---DLIVADE----GVHWGIQNGLYLSRSTV----VYFKHN------DMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       181 a~~~ai~~~~~~g---diI~~~~----~~h~s~~~g~~~s~~~v----~~~~~~------d~~~Le~~l~~~~~~~~~~~  243 (483)
                      -+.+.+-.|-|+.   -.|+.+.    +.|+++..-+++.|..+    +-++..      ..+|+-+.+++..++     
T Consensus       140 Nlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDe-----  214 (465)
T KOG3846|consen  140 NLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDE-----  214 (465)
T ss_pred             HHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCe-----
Confidence            3344455554432   2344433    34666766677766543    112111      234444555554443     


Q ss_pred             CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEcccccccc---
Q 011567          244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALA---  319 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg---  319 (483)
                        .++|...+++--+|...++.+|-+.-+..|+++=.|=+|++|-..     +. ..+|     +|+.+-+--|-+.   
T Consensus       215 --iA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVp-----L~LHdWg-----VDFACWCSYKYlnaGa  282 (465)
T KOG3846|consen  215 --IALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVP-----LQLHDWG-----VDFACWCSYKYLNAGA  282 (465)
T ss_pred             --EEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCc-----eEEeecC-----CceEEEeeecccccCC
Confidence              899999999999999999999997777779999999999876543     22 1233     4888877788873   


Q ss_pred             -CCCceeeccHH-------HHHHH--------------HhcCCceeecCCCcHHHHH-HHHHHHHHHhcCcHHHHHHHHH
Q 011567          320 -TEGGFCTGSAR-------VVDHQ--------------RLSSSGYVFSASLPPYLAS-AAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       320 -~~GG~i~~~~~-------~~~~~--------------~~~~~~~~fs~~~~p~~~a-aa~~al~~l~~~~~~~~~l~~~  376 (483)
                       +.||..+..+.       +.-++              ..-.....|..+.||.... +...+|++..+-  .++.++++
T Consensus       283 GgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~--~~~~lRkr  360 (465)
T KOG3846|consen  283 GGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQF--NINELRKR  360 (465)
T ss_pred             CccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHh--hHHHHhhh
Confidence             33454333222       11111              1111222344555666655 445678877653  24455544


Q ss_pred             HHHH----HHhhccCCCce-----------eec----CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee
Q 011567          377 TAIL----RTGLSDIHGLS-----------IAS----NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS  437 (483)
Q Consensus       377 ~~~l----~~~L~~~~~~~-----------i~~----~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~  437 (483)
                      .-++    .-.++...|..           +..    +.++.-+.+.+..+.          .++.++ |.++|+.+...
T Consensus       361 S~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~----------~~vfqe-L~krGv~~DkR  429 (465)
T KOG3846|consen  361 SLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPT----------PKVFQE-LHKRGVIGDKR  429 (465)
T ss_pred             hhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCc----------hHHHHH-HHHcCeecccc
Confidence            4333    22233222221           111    122334444443321          245665 56679877532


Q ss_pred             cccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHH
Q 011567          438 KRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       438 ~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                       +        |..||++| +...|-.|+-.++++|.+++..+
T Consensus       430 -~--------PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~  462 (465)
T KOG3846|consen  430 -R--------PNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL  462 (465)
T ss_pred             -C--------CCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence             2        45699965 78899999999999999988765

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.04  E-value=0.0011  Score=62.47  Aligned_cols=274  Identities=12%  Similarity=0.093  Sum_probs=146.7

Q ss_pred             EEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcC-CeEEEecCCC----HHHHHHHHHHhhhhhhhccC
Q 011567          173 ILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSR-STVVYFKHND----MDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       173 i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~-~~v~~~~~~d----~~~Le~~l~~~~~~~~~~~~  244 (483)
                      +-.-||+.|+..+..   .+.. ...|+++.+.......-+.-.| .++..+++=|    --++|..|.....    +|.
T Consensus       103 vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~----APe  177 (410)
T KOG1412|consen  103 VQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLES----APE  177 (410)
T ss_pred             eeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhh----CCC
Confidence            445678878776643   3333 4458888887666555555555 3443333211    1134444443322    122


Q ss_pred             ccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccC
Q 011567          245 LRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT  320 (483)
Q Consensus       245 ~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~  320 (483)
                      ...+|+-...++++|.-+.   +.+|++.-++.+.+-+.|-+|-++.-|.--+-.. -.+.++...--+++-||+|.+|.
T Consensus       178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGl  257 (410)
T KOG1412|consen  178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGL  257 (410)
T ss_pred             CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccc
Confidence            2344444445888875333   7889999999999999999987666665333221 11223211114778999999985


Q ss_pred             CC---c---eeeccHHHHHHHH----hcCCceeecCCCcHHHHHHHHHHHHHH---h----cCcHHHHHHHHHHHHHHHh
Q 011567          321 EG---G---FCTGSARVVDHQR----LSSSGYVFSASLPPYLASAAITAIDVL---E----ENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       321 ~G---G---~i~~~~~~~~~~~----~~~~~~~fs~~~~p~~~aaa~~al~~l---~----~~~~~~~~l~~~~~~l~~~  383 (483)
                      -+   |   +++.++.++..+.    .-... .+| .+|.+.+..+.+.|+--   +    ....+-.++.+++..|++.
T Consensus       258 YneRvGnltvv~~n~a~i~~v~SQl~lviR~-~~S-NPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~  335 (410)
T KOG1412|consen  258 YNERVGNLTVVVNNPAVIAGVKSQLTLVIRS-NWS-NPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH  335 (410)
T ss_pred             ccccccceEEEecChhHHHHHHHHHHHHHhh-ccC-CCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43   3   2344444433221    11111 122 22444444444444211   1    1123445666667777777


Q ss_pred             hccC--CC-ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          384 LSDI--HG-LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       384 L~~~--~~-~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      |..+  || +.-.. .+..++.+.--            ...-++.+.+++.|++...+             ||+++. ++
T Consensus       336 L~aL~TPGtWDHI~-~QiGMFSyTGL------------tp~qV~~li~~h~vyLl~~G-------------RInisG-LN  388 (410)
T KOG1412|consen  336 LVALKTPGTWDHIT-QQIGMFSYTGL------------TPAQVDHLIENHKVYLLSDG-------------RINISG-LN  388 (410)
T ss_pred             HHhcCCCCcHHHHH-hhccceeecCC------------CHHHHHHHHHhceEEEecCC-------------cEeeec-cc
Confidence            7665  22 11111 12333333210            11235666777788886542             565543 67


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 011567          461 EADLVKACESLKRISAVVLR  480 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~~~~  480 (483)
                      ...+|.+..+|.++++.+-.
T Consensus       389 ~~NveyVAkAIde~Vr~~~~  408 (410)
T KOG1412|consen  389 MKNVEYVAKAIDETVRAIKS  408 (410)
T ss_pred             cccHHHHHHHHHHHHHhhcc
Confidence            78999999999999987643

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.0081  Score=55.47  Aligned_cols=161  Identities=8%  Similarity=0.131  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhhhC---CCCEEEe--cccHHHHHh--hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----
Q 011567          155 VHLDCEARIAKFLG---TPDSILY--SYGLSTMFS--AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----  222 (483)
Q Consensus       155 ~~~~l~~~La~~~g---~e~~i~~--~sG~~a~~~--ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----  222 (483)
                      +..++....-.+.|   ...++++  .+|.+-...  .++.-..+-+.|+-.+-...+..+.+--.|-+.+.+..     
T Consensus        58 isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d  137 (432)
T KOG3843|consen   58 ISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGD  137 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccch
Confidence            34566666666666   3567666  555432221  12222223456666555555555555555554433321     


Q ss_pred             ---CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC-CCC-CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc
Q 011567          223 ---NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSG-QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT  297 (483)
Q Consensus       223 ---~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G-~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~  297 (483)
                         .|++.+++++++..++        .+..+....+ -.. ....+++|..+|..|++.-|+..+|+.-. ..+-+-..
T Consensus       138 ~l~tdleav~~~iee~g~d--------cilci~sttscfapr~pd~leaiaaica~~diphivnnayglqs-ee~i~~ia  208 (432)
T KOG3843|consen  138 ELITDLEAVEAIIEELGED--------CILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQS-EECIHKIA  208 (432)
T ss_pred             HHHHhHHHHHHHHHHhCCc--------eEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccch-HHHHHHHH
Confidence               2677777888776654        2222221111 111 11229999999999999999999986421 00001111


Q ss_pred             cccCCCCCceeEEEcccccccc-CCCceee
Q 011567          298 EHCGVPVDKIDIVTAAMGHALA-TEGGFCT  326 (483)
Q Consensus       298 ~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~  326 (483)
                      ....+  ..+|-++-|+-|.|- +.||.++
T Consensus       209 a~~~~--grida~vqsldknf~vpvggaii  236 (432)
T KOG3843|consen  209 AAAEC--GRIDAFVQSLDKNFMVPVGGAII  236 (432)
T ss_pred             HHhhh--ccHHHHHHHhhhcceeecchhHh
Confidence            11122  456888889999995 5677653

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.27  E-value=0.056  Score=56.13  Aligned_cols=270  Identities=17%  Similarity=0.169  Sum_probs=141.5

Q ss_pred             HHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhh--ccCCcEEEEcCCchhHHHhHhhh--cCCeEEEecCCCHHHHHH
Q 011567          157 LDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYL--SRSTVVYFKHNDMDSLRN  230 (483)
Q Consensus       157 ~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~--~~~gdiI~~~~~~h~s~~~g~~~--s~~~v~~~~~~d~~~Le~  230 (483)
                      ......++++.|.+  .+-+..-|++|-++...++  .|++ .+++|..+|.-+...++-  .+..+. +...|+++...
T Consensus       166 lNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krk-k~vvd~~~hpqtlsV~~TRa~~~~i~-v~~~~~~~~~~  243 (1001)
T KOG2040|consen  166 LNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRK-KFVVDSNCHPQTLSVVKTRAKGFGIK-VVVSDIKEADY  243 (1001)
T ss_pred             hhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccc-eEEecCCCCcchhhhhhcccccccee-EEecCHHHhhc
Confidence            34455677887754  5667777776655444332  2343 488899999877665542  111111 22223322211


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe-CccccccccCCCCccccccCCCCCceeE
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD-ESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D-Ea~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ..           +.+.-|++.-.-. .|.+.+..++++++++.|.++++- +-.+.-.+-+     ..+||.     ||
T Consensus       244 s~-----------~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrp-----PgefGa-----DI  301 (1001)
T KOG2040|consen  244 SS-----------KDVSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLALTILRP-----PGEFGA-----DI  301 (1001)
T ss_pred             cc-----------cceeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhHHHccCC-----hhhcCc-----ee
Confidence            11           1255566654433 499999999999999999887654 2223222321     123443     88


Q ss_pred             EEccccccccC-------CCceeeccHHHHHHHHhcCCce----------------------eecCCCcHHHHHHHHHHH
Q 011567          310 VTAAMGHALAT-------EGGFCTGSARVVDHQRLSSSGY----------------------VFSASLPPYLASAAITAI  360 (483)
Q Consensus       310 ~~~s~~K~lg~-------~GG~i~~~~~~~~~~~~~~~~~----------------------~fs~~~~p~~~aaa~~al  360 (483)
                      .+|| +.-||.       ..||.+.++++...+...-.+.                      .--++.|--.+.|.++.+
T Consensus       302 avGS-sQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANm  380 (1001)
T KOG2040|consen  302 AVGS-SQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANM  380 (1001)
T ss_pred             eecc-ccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHH
Confidence            8876 334441       1256554444432221000000                      000111222222333322


Q ss_pred             HHH---hcC----cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE
Q 011567          361 DVL---EEN----PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF  433 (483)
Q Consensus       361 ~~l---~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~  433 (483)
                      ..+   -..    .++-+++......|..+|+.. |.++.-..---.+.++++.          .+.++.++++++ +|-
T Consensus       381 aAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~----------s~~~~l~rA~~~-~iN  448 (1001)
T KOG2040|consen  381 AAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGC----------SAEEVLDRAAKR-QIN  448 (1001)
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccccccceEEEEecC----------cHHHHHHHHHhh-cCc
Confidence            211   122    245556666677788888764 6666533222234445532          133566666665 576


Q ss_pred             EEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          434 VVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       434 v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ++....         ..|-+++--..+++|+|.++.++.
T Consensus       449 lr~~ed---------~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  449 LRLVED---------GTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             eEEeec---------CceEEeecccccHHHHHHHHHHHc
Confidence            654322         227788888899999999999886

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.24  E-value=0.027  Score=54.55  Aligned_cols=271  Identities=15%  Similarity=0.183  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHhhh---C----CCCEEEecccH-HHHHhhhhhhc------cCCcEEEEcCCchhHHHhHhhhcCCeEEEe
Q 011567          155 VHLDCEARIAKFL---G----TPDSILYSYGL-STMFSAIPCFC------KKGDLIVADEGVHWGIQNGLYLSRSTVVYF  220 (483)
Q Consensus       155 ~~~~l~~~La~~~---g----~e~~i~~~sG~-~a~~~ai~~~~------~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~  220 (483)
                      +..+|++.|.++.   |    ...-|++.+|+ +-+.+|+-+++      .+.-.|+...+|+.++..-...-.+....+
T Consensus        44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w  123 (363)
T PF04864_consen   44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKW  123 (363)
T ss_dssp             S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEE
T ss_pred             ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccc
Confidence            4566776666664   4    24678887775 54555554443      233468888999888776555544444444


Q ss_pred             cCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          221 KHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       221 ~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                      .- |.....   .....       ..-+=++..++|+.|.+-.     .+.+.-+..+|.|=+|=.           .||
T Consensus       124 ~G-da~~~~---~~~~~-------~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYW-----------Phy  176 (363)
T PF04864_consen  124 AG-DASNFK---NSDNP-------SPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYW-----------PHY  176 (363)
T ss_dssp             EE-ECCCGT---T-S-C-------CGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-S-----------TTT
T ss_pred             cc-cHHhhc---cCCCC-------CCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeec-----------ccc
Confidence            32 111111   11001       1233344455666665421     123455677899988632           122


Q ss_pred             C-C-CCCceeEEEccccccccCCC---ceee-ccHHHHHH----HHhcCCceeecCCCcHHHHHHHHHHHHHHhc-Cc--
Q 011567          301 G-V-PVDKIDIVTAAMGHALATEG---GFCT-GSARVVDH----QRLSSSGYVFSASLPPYLASAAITAIDVLEE-NP--  367 (483)
Q Consensus       301 ~-v-~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~~~~~----~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~--  367 (483)
                      - + .|.+=||+++|+||.-|-.|   ||.+ .++++.+.    +..+..|-    +  --...-+.+.|+.+.+ ..  
T Consensus       177 TpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGv----S--~dsQLRa~kiLk~v~~~~~~~  250 (363)
T PF04864_consen  177 TPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGV----S--RDSQLRALKILKVVLDGYGTE  250 (363)
T ss_dssp             S---S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--------HHHHHHHHHHHHHHHHHCCHH
T ss_pred             cccCCCCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccC----c--HHHHHHHHHHHHHHHhcccCC
Confidence            1 1 12344999999999998555   8854 44555443    33333221    1  1111112222222211 10  


Q ss_pred             --------HHHHHHHHHHHHHHHhhccCCCceeec-------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          368 --------DLITKLKKNTAILRTGLSDIHGLSIAS-------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       368 --------~~~~~l~~~~~~l~~~L~~~~~~~i~~-------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                              --.+.++++-+.|++.+..-.-+.+..             .+...+-+++...+.   +.|       |...
T Consensus       251 ~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee---d~D-------C~~~  320 (363)
T PF04864_consen  251 KGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE---DED-------CYAV  320 (363)
T ss_dssp             TTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG---GSS-------HHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc---ccc-------HHHH
Confidence                    124566777788888886643333221             123446777775321   111       4557


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      |++.||+.+.+.....+    +.-+|+++  ..++++.|.+++.|...
T Consensus       321 l~~~~I~tr~G~~fga~----~ryVRlSm--l~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  321 LREAKIITRSGVLFGAD----SRYVRLSM--LKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             HHCTTEEEEEGGGGTS-----TTEEEEES--SS-HHHHHHHHHHHHCC
T ss_pred             HHhCCcccCCCCccCCC----CCeEEEec--cCCHHHHHHHHHHHHhh
Confidence            88889999877554331    12289876  47999999999988753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.19  E-value=0.038  Score=51.75  Aligned_cols=318  Identities=19%  Similarity=0.223  Sum_probs=161.3

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCC----CCCcccChHHHHHHHHHHHhhhCCCC--EEEe--cccHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCG----PRGFYGTIDVHLDCEARIAKFLGTPD--SILY--SYGLS  180 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~----~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~--~sG~~  180 (483)
                      ++++||+.+- --+ +++-+.++-++.+.--|.|-+-    .|.- --..++.+-+..+.+++..++  .++|  .+|+.
T Consensus         6 ~~vvnFaaGP-Akl-p~~VL~e~qkdl~n~~g~GisV~EmSHRsk-~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~   82 (370)
T KOG2790|consen    6 ERVVNFAAGP-AKL-PESVLLEAQKDLLNFNGSGISVMEMSHRSK-DFAKIINDTESLLRELLNIPDNYKVLFLQGGGTG   82 (370)
T ss_pred             cceeecCCCc-ccC-CHHHHHHHHHHhhccCCCcceEEEecccch-hHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcc
Confidence            4688998761 122 4455556655655544443211    1110 012467788888999988653  4444  33332


Q ss_pred             HHHhhhh-hhc--cC---CcEEEEcCCchhHHHhHhhhcCCeEEEec--------CCCHHHHHHHHHHhhhhhhhccCcc
Q 011567          181 TMFSAIP-CFC--KK---GDLIVADEGVHWGIQNGLYLSRSTVVYFK--------HNDMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       181 a~~~ai~-~~~--~~---gdiI~~~~~~h~s~~~g~~~s~~~v~~~~--------~~d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                       -.+|++ .+.  +.   -|.|++..-.--+.-++-+......+.++        ..|.+.++...     +      ..
T Consensus        83 -qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~~-----d------a~  150 (370)
T KOG2790|consen   83 -QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELNP-----D------AS  150 (370)
T ss_pred             -cccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccCC-----C------cc
Confidence             222221 122  33   35666655444344444444433333222        12444443211     1      11


Q ss_pred             EEEEE--ecccCCCCCccC-hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-
Q 011567          247 RYIVV--EAVYQNSGQIAP-LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-  322 (483)
Q Consensus       247 ~~iv~--e~v~~~~G~i~~-L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-  322 (483)
                      -+..+  |.+.   |.-.+ ++    +-.-+|..+++|-+.-|  +.+       .+++  .+.+++++.--|.+|+.| 
T Consensus       151 yvyyCaNETVH---GVEf~~~P----~~~~~~~vlVaDmSSnf--lSr-------pvDv--sk~gvi~aGAQKN~G~aG~  212 (370)
T KOG2790|consen  151 YVYYCANETVH---GVEFDFIP----VNDPKGAVLVADMSSNF--LSR-------PVDV--SKFGVIFAGAQKNVGPAGV  212 (370)
T ss_pred             EEEEecCceee---ceecCCCC----CCCCCCceEEEecccch--hcC-------Cccc--hhcceEEeccccccCcccc
Confidence            22222  2233   32221 22    22346889999976554  332       2333  344677778899998777 


Q ss_pred             -ceeeccHHHH-HHHHhcCCce----------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccC
Q 011567          323 -GFCTGSARVV-DHQRLSSSGY----------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       323 -G~i~~~~~~~-~~~~~~~~~~----------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~  387 (483)
                       .+++ +++++ .++......+          .|.+ +|-+..-+.--.++++.+.   ..+.+...++.+.+.+.+.+.
T Consensus       213 Tvviv-r~dllg~~~~~tP~v~dyk~~~~NnSlyNT-pP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s  290 (370)
T KOG2790|consen  213 TVVIV-RKDLLGNALDITPSVLDYKIMDKNNSLYNT-PPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNS  290 (370)
T ss_pred             EEEEE-ehhhhcccccCCccccceeeeccccccccC-CCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc
Confidence             3343 33333 2222111111          1111 2333333344466766543   245555677888999999887


Q ss_pred             CCceeec---CCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          388 HGLSIAS---NPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       388 ~~~~i~~---~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      .|+-..+   ..+|-+ +++++++        ..+-.++.+++.+++ ..-..+ +.+      -+|||-++...+|-++
T Consensus       291 ~gfy~cpVe~~~RS~MNV~Fri~~--------d~Le~eFLkeA~~~~-mv~LKG-hRS------VGGiRASlYNAisv~~  354 (370)
T KOG2790|consen  291 NGFYRCPVEPSVRSRMNVPFRIEK--------DELEAEFLKEAAKEH-MVQLKG-HRS------VGGIRASLYNAISVEE  354 (370)
T ss_pred             CCeEEcccchhhhhhcccceeecc--------hHHHHHHHHHHHHhh-hhcccc-ccc------cccchhhhhccccHHH
Confidence            6754332   223332 4556642        222335566655553 322222 222      2679999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          464 LVKACESLKRISAV  477 (483)
Q Consensus       464 i~~~~~~l~~~~~~  477 (483)
                      ++++++-++++.+.
T Consensus       355 ~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  355 VQKLAAFMKEFQKK  368 (370)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887653

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0075  Score=57.88  Aligned_cols=262  Identities=12%  Similarity=0.144  Sum_probs=138.4

Q ss_pred             cccHHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHH----HHHHHHHHhhhhhhhccCccEE
Q 011567          176 SYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD----SLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       176 ~sG~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~----~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      -||+.|+..+.   ..|. ++..|+.+.+..+...+.....|..+..+++-|++    +++..++....    .|.. .+
T Consensus       127 lSGTGaLriga~Fl~~f~-~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~----~p~g-s~  200 (427)
T KOG1411|consen  127 LSGTGALRVGAEFLARFY-PSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGE----APEG-SI  200 (427)
T ss_pred             ccCcchhhHHHHHHHhhc-cccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhc----CCCC-cE
Confidence            56666655442   2333 47788889988888777888888887777665433    23334443322    1212 34


Q ss_pred             EEEec-ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc--ccccCCCCCceeEEEccccccccCCC
Q 011567          249 IVVEA-VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL--TEHCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       249 iv~e~-v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~--~~~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      |+... ..+++|.-+-   +++|+++-++.+.+-++|-+|-++..|.--+-.  ..+|--+ ..--++.-|++|.+|.-|
T Consensus       201 ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~-g~~~~laQSyAKNMGLYg  279 (427)
T KOG1411|consen  201 ILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVED-GHEILLAQSYAKNMGLYG  279 (427)
T ss_pred             EEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHc-CCceEeehhhhhhcchhh
Confidence            44444 4566765332   789999999999999999998765555321111  1111111 111356789999999654


Q ss_pred             ----ce--eeccHHHH----HHHHhcCCceeecCCCcHHHHHHHHH-HHH-------HHhcCcHHHHHHHHHHHHHHHhh
Q 011567          323 ----GF--CTGSARVV----DHQRLSSSGYVFSASLPPYLASAAIT-AID-------VLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       323 ----G~--i~~~~~~~----~~~~~~~~~~~fs~~~~p~~~aaa~~-al~-------~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                          .+  ++.+.+..    .+++.-..+ .||.  ||+--|-..+ .|.       ++.+...+.+++..++..|.+.|
T Consensus       280 ERvGa~svvc~~ad~A~rV~SQlk~liRp-mYSn--PP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L  356 (427)
T KOG1411|consen  280 ERVGALSVVCKDADEAKRVESQLKILIRP-MYSN--PPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDAL  356 (427)
T ss_pred             hccceeEEEecCHHHHHHHHHHHHHHhcc-cccC--CCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHh
Confidence                33  23343332    223332223 3443  3433322211 111       11112234556666666666666


Q ss_pred             ccCCCcee----ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          385 SDIHGLSI----ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       385 ~~~~~~~i----~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      ... |-+.    ... +-.++++.--+        +    +-++.+.++.-|+++..             -||+++. .+
T Consensus       357 ~~~-gs~~~W~hI~~-QIGMF~fTgl~--------p----eQv~~l~ke~~iYmT~d-------------GRiS~aG-~s  408 (427)
T KOG1411|consen  357 EKE-GSPGNWSHITK-QIGMFCFTGLN--------P----EQVDWLTKEYHIYLTKD-------------GRISMAG-LS  408 (427)
T ss_pred             hcC-CCCccHHHHHH-hhheeeecCCC--------H----HHHHHHHhhheeeeccC-------------ceEeecc-cc
Confidence            553 2211    111 22244443111        1    22455556667777643             3677643 56


Q ss_pred             HHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRIS  475 (483)
Q Consensus       461 ~edi~~~~~~l~~~~  475 (483)
                      ...++++.++|..+.
T Consensus       409 s~nV~yLa~aih~vt  423 (427)
T KOG1411|consen  409 SSNVPYLADAIHAVT  423 (427)
T ss_pred             ccCCcccchhhHhHh
Confidence            677777777776554

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=95.42  E-value=0.075  Score=46.22  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=39.6

Q ss_pred             ccChHHHHHHHHHHHhhhC--C----CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchh
Q 011567          150 YGTIDVHLDCEARIAKFLG--T----PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHW  204 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g--~----e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~  204 (483)
                      .|...+...+++.+.+.+|  .    ++.++.+++++++..++.+++.+||.|+++.+++.
T Consensus        92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~  152 (153)
T PLN02994         92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA  152 (153)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            4555566666666666555  1    24445566678899999999999999999998874

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=86.41  E-value=16  Score=34.43  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEe-cccCCCCC---ccChHHHHHHHHHcCcEEEEeCccccc
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVE-AVYQNSGQ---IAPLDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e-~v~~~~G~---i~~L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                      ++++++..++.....     ....++++| ++++-.-.   ..+|..|..+++++++.+|+|-+|+.|
T Consensus       134 t~~e~~~A~e~i~~~-----Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G  196 (250)
T PRK13397        134 TIEEYLGALSYLQDT-----GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTG  196 (250)
T ss_pred             CHHHHHHHHHHHHHc-----CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCc
Confidence            556666655554432     135688888 65332111   556889999999999999999999855

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=85.37  E-value=15  Score=36.53  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CchhHHHhHhhhcCCeEEEec---CCCHHHHHHHHHHhhhhhhhccCccEEEEEec---cc--CCCCCccChHHHHHHHH
Q 011567          201 GVHWGIQNGLYLSRSTVVYFK---HNDMDSLRNTLERVTADNKRAKKLRRYIVVEA---VY--QNSGQIAPLDELIRLKE  272 (483)
Q Consensus       201 ~~h~s~~~g~~~s~~~v~~~~---~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~---v~--~~~G~i~~L~~l~~l~~  272 (483)
                      ..++.+.+.+.-.+..+ .++   ..+++++....+.....     ....++++|-   .|  ..+-...+|..|..+++
T Consensus       195 ~~n~~LL~~va~t~kPV-llk~G~~~t~ee~~~A~e~i~~~-----Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~  268 (352)
T PRK13396        195 MQNFSLLKKVGAQDKPV-LLKRGMAATIDEWLMAAEYILAA-----GNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRS  268 (352)
T ss_pred             ccCHHHHHHHHccCCeE-EEeCCCCCCHHHHHHHHHHHHHc-----CCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHH
Confidence            34556666665555444 333   22677777666665432     1246888876   22  11235567999999999


Q ss_pred             HcCcEEEEeCccccc
Q 011567          273 KYRFRVFLDESNSFG  287 (483)
Q Consensus       273 k~~~~li~DEa~s~g  287 (483)
                      .+++.+|+|-+|+.|
T Consensus       269 ~~~lPVi~DpsH~~G  283 (352)
T PRK13396        269 LTHLPIMIDPSHGTG  283 (352)
T ss_pred             hhCCCEEECCcccCC
Confidence            999999999999864

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=81.44  E-value=25  Score=35.26  Aligned_cols=83  Identities=12%  Similarity=0.165  Sum_probs=54.2

Q ss_pred             CCchhHHHhHhhhcCCeEEEec--CCCHHHHHHHHHHhhhhhhhccCccEEEEEe-cccCC--C-CCccChHHHHHHHHH
Q 011567          200 EGVHWGIQNGLYLSRSTVVYFK--HNDMDSLRNTLERVTADNKRAKKLRRYIVVE-AVYQN--S-GQIAPLDELIRLKEK  273 (483)
Q Consensus       200 ~~~h~s~~~g~~~s~~~v~~~~--~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e-~v~~~--~-G~i~~L~~l~~l~~k  273 (483)
                      ...+..+...+.-.+..+..=.  +.++++++..++.....     ....+++++ ++.+-  . -.-.+|..|..+.++
T Consensus       211 ~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-----Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~  285 (360)
T PRK12595        211 NMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQ-----GNGQIILCERGIRTYEKATRNTLDISAVPILKQE  285 (360)
T ss_pred             cccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHC-----CCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH
Confidence            3455666666665555554322  24778887777665432     124588888 55431  1 222479999999999


Q ss_pred             cCcEEEEeCccccc
Q 011567          274 YRFRVFLDESNSFG  287 (483)
Q Consensus       274 ~~~~li~DEa~s~g  287 (483)
                      +++.+++|-.|+.|
T Consensus       286 ~~~PV~~d~~Hs~G  299 (360)
T PRK12595        286 THLPVMVDVTHSTG  299 (360)
T ss_pred             hCCCEEEeCCCCCc
Confidence            99999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	483
3a2b_A	398	Crystal Structure Of Serine Palmitoyltransferase Fr		3e-43
3tqx_A	399	Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A		2e-39
2x8u_A	412	Sphingomonas Wittichii Serine Palmitoyltransferase		2e-36
2w8t_A	427	Spt With Plp, N100c Length = 427		1e-32
2w8v_A	427	Spt With Plp, N100w Length = 427		2e-31
2w8w_A	427	N100y Spt With Plp-Ser Length = 427		3e-31
2jgt_A	422	Low Resolution Structure Of Spt Length = 422		3e-31
2w8j_A	427	Spt With Plp-Ser Length = 427		3e-31
2w8u_A	427	Spt With Plp, N100y Length = 427		3e-31
2jg2_A	422	High Resolution Structure Of Spt With Plp Internal		3e-31
1fc4_A	401	2-Amino-3-Ketobutyrate Coa Ligase Length = 401		2e-30
4iw7_A	399	Crystal Structure Of 8-amino-7-oxononanoate Synthas		8e-23
2bwo_B	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		1e-21
2bwn_A	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		1e-21
1dj9_A	384	Crystal Structure Of 8-Amino-7-Oxonanoate Synthase		1e-17
1bs0_A	384	Plp-dependent Acyl-coa Synthase Length = 384		3e-17
3hqt_A	409	Plp-Dependent Acyl-Coa Transferase Cqsa Length = 40		7e-15
2wk7_A	393	Structure Of Apo Form Of Vibrio Cholerae Cqsa Lengt		7e-15
2wk8_A	389	Structure Of Holo Form Of Vibrio Cholerae Cqsa Leng		8e-15

>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From Sphingobacterium Multivorum With Substrate L-Serine Length = 398

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 198/406 (48%), Gaps = 47/406 (11%)
Query: 85  IIEEMRCEP------PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEK 138
           I+EE++ +       P+ +S       I G+ V+ F S +YLGL    +++++   ALEK
Sbjct: 14  IVEELKAKGLYAYFRPI-QSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEK 72
Query: 139 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
           YG G  G R   GT+D+H++ E +++ ++G   +IL+S G  +    + C   + D I+ 
Sbjct: 73  YGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL 132
Query: 199 DEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258
           DE  H  I +G  LS S V+ + HN+M+ LR  L R+  D+       + I  + ++   
Sbjct: 133 DERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSA------KLICTDGIFSME 186
Query: 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL 318
           G I  L EL  +  ++   V +D+++S GV+G  G G   H G+  D +D++      +L
Sbjct: 187 GDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSL 245
Query: 319 ATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTA 378
           A+ GGF  G A V+D  + ++   +F            + A+++++  P+ I KL KNT 
Sbjct: 246 ASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTD 305
Query: 379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA---LKEDGVFV- 434
             +  L D HG  + +  ESPI+ + +  +  +             W    L++DGVFV 
Sbjct: 306 YAKAQLLD-HGFDLGAT-ESPILPIFIRSNEKTF------------WVTKMLQDDGVFVN 351
Query: 435 ------VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
                 V ++ S+         IR  + A H+   + +A E + ++
Sbjct: 352 PVVSPAVPAEESL---------IRFSLMATHTYDQIDEAIEKMVKV 388

>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase (Kbl) From Coxiella Burnetii Length = 399

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 26/385 (6%)
Query: 95  VLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTID 154
           ++ S       +  KEV+NF + NYLGL  H  L+++  + +E+YG G    R   GT  
Sbjct: 29  IITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFICGTQT 88
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSR 214
           +H + E  I++FLGT D+ILYS                 D I++DE  H  I +G+ L +
Sbjct: 89  IHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCK 148
Query: 215 STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY 274
           +    +K+N    L   L+   AD K A+   + I  + V+   G IA L  +  L +KY
Sbjct: 149 AQRYRYKNNAXGDLEAKLKE--ADEKGAR--FKLIATDGVFSXDGIIADLKSICDLADKY 204
Query: 275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVD 333
              V +D+S++ G +G +GRG  E+CGV  D++DI+T  +G AL    GG+ +G   +++
Sbjct: 205 NALVXVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKEIIE 263
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSI 392
             R  S  Y+F            +  +++L+ E P L  +L++N+   R G   +    +
Sbjct: 264 WLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGXEKLGFQLV 323
Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG-- 450
             N   PI+ + L         D QL  + AD  L+E G++VV     +     +P G  
Sbjct: 324 PGN--HPIIPVXL--------GDAQLATNXADHLLQE-GIYVVGFSYPV-----VPXGKA 367
Query: 451 -IRLFVSAAHSEADLVKACESLKRI 474
            IR+  SA H++  L +A E+  ++
Sbjct: 368 RIRVQXSAVHTQQQLDRAIEAFGQV 392

>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase Length = 412

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 159/335 (47%), Gaps = 18/335 (5%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
           +I+G++ +   + NY+G+     ++ +   AL+++G G+ G R   GT   H  CE  + 
Sbjct: 40  MINGRKTILLGTYNYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALK 99
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
           +F GT  +I++S G       I     KGD I+ D   H  I +G +L  + +V F+HN 
Sbjct: 100 EFYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDADSHASIYDGCWLGDAEIVRFRHNS 159
Query: 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
           ++ L   L R+ A+   A KL   +V+E VY   G IAPL E++ + +K+   + +DE++
Sbjct: 160 VEDLDKRLGRLPAE---AGKL---VVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAH 213
Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
             G  G  GRG+ E  GV  D +D V      ++ T GGFC  +    +  RL    YVF
Sbjct: 214 GMGFFGEHGRGVFEEAGVEAD-VDFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRPYVF 272
Query: 345 XXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404
                        T+I  L    D    L KN+  L  GL D+         +S I+ +I
Sbjct: 273 TASLPPSVVATAATSIRKLMHAGDKRAHLWKNSRRLHQGLRDMGYKLGTETAQSAIIAVI 332
Query: 405 LEKSTGSMKNDLQLLEDIADW-ALKEDGVFVVTSK 438
           L            + + +A W  L E G++V T++
Sbjct: 333 LT----------DMAQAVALWQGLLEAGLYVNTAR 357

>pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+CG R   GT 
Sbjct: 49  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354

>pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 49  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354

>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 49  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354

>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 50  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 223
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 224 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 282
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 283 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 341
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 342 TETCDSAIVAVMLE 355

>pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 49  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354

>pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 49  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354

>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95  VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+ G R   GT 
Sbjct: 50  VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
             H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +G    
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            + +V F+HN ++ L   L R+       K+  + +V+E VY   G IAPL E++ + +K
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 223
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +    +
Sbjct: 224 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 282
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
             RL+   Y+F             T+I  L    +   +L  N   L  GL  + G  + 
Sbjct: 283 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 341
Query: 394 SNP-ESPIVFLILE 406
           +   +S IV ++LE
Sbjct: 342 TETCDSAIVAVMLE 355

>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase Length = 401

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 167/372 (44%), Gaps = 19/372 (5%)
Query: 104 TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI 163
           T+  G  V+NF + NYLGL  H  L+ +  +  + +G G    R   GT D H + E ++
Sbjct: 40  TVADGSHVINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQKL 99
Query: 164 AKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN 223
           A FLG  D+ILYS                 D I++D   H  I +G+ L ++    + +N
Sbjct: 100 AAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN 159
Query: 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDES 283
           D   L   L+    + + A      I  + V+   G IA L  +  L +KY   V +D+S
Sbjct: 160 DXQELEARLK----EAREAGARHVLIATDGVFSXDGVIANLKGVCDLADKYDALVXVDDS 215
Query: 284 NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGY 342
           ++ G +G +GRG  E+C V   ++DI+T  +G AL    GG+      VV+  R  S  Y
Sbjct: 216 HAVGFVGENGRGSHEYCDV-XGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPY 274
Query: 343 VFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF 402
           +F            I  ++ +E   +L  +L  N    R   S   G ++A   +  I+ 
Sbjct: 275 LFSNSLAPAIVAASIKVLEXVEAGSELRDRLWANARQFREQXS-AAGFTLA-GADHAIIP 332
Query: 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 462
           + L  +  + K   +         L+++G++V      ++ K +    IR   SAAH+  
Sbjct: 333 VXLGDAVVAQKFARE---------LQKEGIYVTGFFYPVVPKGQAR--IRTQXSAAHTPE 381
Query: 463 DLVKACESLKRI 474
            + +A E+  RI
Sbjct: 382 QITRAVEAFTRI 393

>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase (biof) From Francisella Tularensis Length = 399

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 15/317 (4%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
            I    +++F +++YL L     L  +  +  +KYG GS G     G  D     E   A
Sbjct: 47  FIKDDSIIDFTTSDYLNLSSAHNLKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFA 106
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
           KF+  P +I +S G     +       K D I AD+ +H  I +G+ LS++ +  +KH  
Sbjct: 107 KFINYPRAIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQ 166
Query: 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
           +  L++  +            + +I  E V+  SG I  LD+L ++  +   ++ +DE++
Sbjct: 167 LSQLQDIYDG-----------KSFITTEGVFSTSGSITQLDKLAKITPE---KLIVDEAH 212
Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
           SFGVLG++GRG      +      I    +G A    G     +  + ++    +  Y++
Sbjct: 213 SFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIY 272
Query: 345 XXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404
                       +  +  LE   D   +L++N       L D   L + S   SPI  + 
Sbjct: 273 TTALPPMILKAALIQLKNLENVNDNRARLQQNITFFNE-LCDAKDLELVSKDLSPIRSIQ 331
Query: 405 LEKSTGSMKNDLQLLED 421
           L  +  +++   +L E+
Sbjct: 332 LNNANLAIRLKDKLFEN 348

>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In Complex With Succinyl-Coa Length = 401

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 19/243 (7%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
           +++  +   +YLG+  H  +L +   ALE  G GS G R   GT   H   EA IA    
Sbjct: 46  QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
              ++++S         LST+    P     G +I +D   H  +  G+  +      F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
           HND+  LR   E + AD+  A KL   I  E+VY   G   P+ E+  + E++    ++D
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKL---IAFESVYSMDGDFGPIKEICDIAEEFGALTYID 214
Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
           E ++ G+ G  G G+ E  G+ + +IDI    +  A    GG+   SAR+VD  R  + G
Sbjct: 215 EVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPG 273
Query: 342 YVF 344
           ++F
Sbjct: 274 FIF 276

>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus Length = 401

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 19/243 (7%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
           +++  +   +YLG+  H  +L +   ALE  G GS G R   GT   H   EA IA    
Sbjct: 46  QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
              ++++S         LST+    P     G +I +D   H  +  G+  +      F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
           HND+  LR   E + AD+  A KL   I  E+VY   G   P+ E+  + E++    ++D
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKL---IAFESVYSMDGDFGPIKEICDIAEEFGALTYID 214
Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
           E ++ G+ G  G G+ E  G+ + +IDI    +  A    GG+   SAR+VD  R  + G
Sbjct: 215 EVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAXAYGVFGGYIAASARMVDAVRSYAPG 273
Query: 342 YVF 344
           ++F
Sbjct: 274 FIF 276

>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa). The Enzyme Of Biotin Biosynthetic Pathway. Length = 384

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 34/391 (8%)
Query: 87  EEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP 146
           + +R   PV +  AG   +   ++ +NF+S +YLGL  H +++ +     E++G+GS G 
Sbjct: 18  DALRRRYPVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS 76
Query: 147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGI 206
               G   VH   E  +A++LG   ++L+  G +   + I     K D I AD   H  +
Sbjct: 77  GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASL 136
Query: 207 QNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE 266
                LS S +  F HND+      L R+ A     +++   +V E V+   G  APL E
Sbjct: 137 LEAASLSPSQLRRFAHNDV----THLARLLASPCPGQQM---VVTEGVFSMDGDSAPLAE 189
Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
           + ++ +++   + +D+++  GV+G  GRG    C +   K +++    G      G    
Sbjct: 190 IQQVTQQHNGWLMVDDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVL 246
Query: 327 GSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGL 384
            S+ V D+    +   ++              ++ V+  +E      KL       R G+
Sbjct: 247 CSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306
Query: 385 SDI-HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD 443
            D+   L+ + +   P++        G     LQL E      L++ G +V   +     
Sbjct: 307 QDLPFTLADSCSAIQPLI-------VGDNSRALQLAEK-----LRQQGCWVTGIRPPT-- 352
Query: 444 KCRLPVGI---RLFVSAAHSEADLVKACESL 471
              +P GI   RL ++AAH   D+ +  E L
Sbjct: 353 ---VPAGIARLRLTLTAAHEMQDIDRLLEVL 380

>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase Length = 384

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 166/384 (43%), Gaps = 34/384 (8%)
Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
           PV +  AG   +   ++ +NF+S +YLGL  H +++ +     E++G+GS G     G  
Sbjct: 25  PVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
            VH   E  +A++LG   ++L+  G +   + I     K D I AD   H  +     LS
Sbjct: 84  VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            S +  F HND+      L R+ A     +++   +V E V+   G  APL E+ ++ ++
Sbjct: 144 PSQLRRFAHNDV----THLARLLASPCPGQQM---VVTEGVFSMDGDSAPLAEIQQVTQQ 196
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   + +D+++  GV+G  GRG    C +   K +++    G      G     S+ V D
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVAD 253
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGLSDI-HGL 390
           +    +   ++              ++ V+  +E      KL       R G+ D+   L
Sbjct: 254 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTL 313
Query: 391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG 450
           + + +   P++        G     LQL E      L++ G +V     + +    +P G
Sbjct: 314 ADSCSAIQPLI-------VGDNSRALQLAEK-----LRQQGCWV-----TAIRPPTVPAG 356
Query: 451 ---IRLFVSAAHSEADLVKACESL 471
              +RL ++AAH   D+ +  E L
Sbjct: 357 TARLRLTLTAAHEMQDIDRLLEVL 380

>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa Length = 409

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
           E R+AKF G  + +L   G +     +   C+    +  D   H  +  G   + +    
Sbjct: 110 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 169
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
           F HN+ D LR  ++R              IVV+++Y   G IAPL EL+ + +++   + 
Sbjct: 170 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 220
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
           +DES+S G  G +G GL    G+   ++  +TA++    A   G    +  V       S
Sbjct: 221 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 279
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
              +F             T ++++E   +    L +    LR GLS + GL+I S  ES 
Sbjct: 280 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 336
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
           I+ L     TG  +N     E + D+ L+ +GVF
Sbjct: 337 IIGL----ETGDERNT----EKVRDY-LESNGVF 361

>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa Length = 393

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
           E R+AKF G  + +L   G +     +   C+    +  D   H  +  G   + +    
Sbjct: 90  EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
           F HN+ D LR  ++R              IVV+++Y   G IAPL EL+ + +++   + 
Sbjct: 150 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 200
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
           +DES+S G  G +G GL    G+   ++  +TA++    A   G    +  V       S
Sbjct: 201 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 259
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
              +F             T ++++E   +    L +    LR GLS + GL+I S  ES 
Sbjct: 260 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 316
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
           I+ L     TG  +N     E + D+ L+ +GVF
Sbjct: 317 IIGL----ETGDERNT----EKVRDY-LESNGVF 341

>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa Length = 389

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
           E R+AKF G  + +L   G +     +   C+    +  D   H  +  G   + +    
Sbjct: 90  EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
           F HN+ D LR  ++R              IVV+++Y   G IAPL EL+ + +++   + 
Sbjct: 150 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 200
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
           +DES+S G  G +G GL    G+   ++  +TA++    A   G    +  V       S
Sbjct: 201 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 259
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
              +F             T ++++E   +    L +    LR GLS + GL+I S  ES 
Sbjct: 260 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 316
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
           I+ L     TG  +N     E + D+ L+ +GVF
Sbjct: 317 IIGL----ETGDERNT----EKVRDY-LESNGVF 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	483
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	1e-109
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	1e-102
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	1e-100
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	1e-100
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	5e-95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	9e-91
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	2e-85
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	3e-06
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	1e-04

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score =  327 bits (842), Expect = e-109
 Identities = 109/389 (28%), Positives = 193/389 (49%), Gaps = 32/389 (8%)

Query: 92  EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
               ++S       I G+ V+ F S +YLGL    +++++   ALEKYG G  G R   G
Sbjct: 26  YFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNG 85

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
           T+D+H++ E +++ ++G   +IL+S G  +    + C   + D I+ DE  H  I +G  
Sbjct: 86  TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSR 145

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
           LS S V+ + HN+M+ LR  L R+  D+       + I  + ++   G I  L EL  + 
Sbjct: 146 LSFSKVIKYGHNNMEDLRAKLSRLPEDS------AKLICTDGIFSMEGDIVNLPELTSIA 199

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
            ++   V +D+++S GV+G  G G   H G+  D +D++      +LA+ GGF  G A V
Sbjct: 200 NEFDAAVMVDDAHSLGVIGHKGAGTASHFGL-NDDVDLIMGTFSKSLASLGGFVAGDADV 258

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
           +D  + ++   +FSAS+ P   ++ + A+++++  P+ I KL KNT   +  L D  G  
Sbjct: 259 IDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFD 317

Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLDKC 445
           +    ESPI+ + +     S +    + +      L++DGVFV              ++ 
Sbjct: 318 LG-ATESPILPIFI----RSNEKTFWVTK-----MLQDDGVFVNPVVSPAVPA----EES 363

Query: 446 RLPVGIRLFVSAAHSEADLVKACESLKRI 474
                IR  + A H+   + +A E + ++
Sbjct: 364 L----IRFSLMATHTYDQIDEAIEKMVKV 388

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score =  310 bits (796), Expect = e-102
 Identities = 105/393 (26%), Positives = 176/393 (44%), Gaps = 33/393 (8%)

Query: 90  RCEPPVLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG 148
                V+E    P   +I GK+ +   + NY+G+     ++ +   ALEK+G G+CG R 
Sbjct: 44  DPFAIVMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRM 103

Query: 149 FYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN 208
             GT   H++ E  +  F GT  +I++S G       I     KG+ ++ D   H  I +
Sbjct: 104 LNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYD 163

Query: 209 GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI 268
           G     + +V F+HN ++ L   L R+  +        + +V+E VY   G IAPL E++
Sbjct: 164 GCQQGNAEIVRFRHNSVEDLDKRLGRLPKEP------AKLVVLEGVYSMLGDIAPLKEMV 217

Query: 269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGS 328
            + +K+   V +DE++S G  G +GRG+ E  G+   +ID V      ++ T GGF   +
Sbjct: 218 AVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVGTVGGFVVSN 276

Query: 329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH 388
               +  RL+   Y+F+ASLPP + + A T+I  L    +   +L  N   L  GL  + 
Sbjct: 277 HPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM- 335

Query: 389 GLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSM 441
           G  +     +S IV ++LE        D +    +   AL + G++V       T     
Sbjct: 336 GFRLGTETCDSAIVAVMLE--------DQEQAAMMWQ-ALLDGGLYVNMARPPATPA--- 383

Query: 442 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
                    +R  + A H+ A +       +  
Sbjct: 384 -GTFL----LRCSICAEHTPAQIQTVLGMFQAA 411

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score =  305 bits (783), Expect = e-100
 Identities = 110/395 (27%), Positives = 193/395 (48%), Gaps = 40/395 (10%)

Query: 92  EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
              ++ S       +  KEV+NF + NYLGL  H  L+++  + +E+YG G    R   G
Sbjct: 26  SERIITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICG 85

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
           T  +H + E  I++FLGT D+ILYS                 D I++DE  H  I +G+ 
Sbjct: 86  TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIR 145

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
           L ++    +K+N M  L   L+       R     + I  + V+   G IA L  +  L 
Sbjct: 146 LCKAQRYRYKNNAMGDLEAKLKEADEKGAR----FKLIATDGVFSMDGIIADLKSICDLA 201

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR 330
           +KY   V +D+S++ G +G +GRG  E+CGV  D++DI+T  +G AL    GG+ +G   
Sbjct: 202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKE 260

Query: 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHG 389
           +++  R  S  Y+FS ++ P + + ++  +++L+ E P L  +L++N+   R G+  + G
Sbjct: 261 IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-G 319

Query: 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSML 442
             +      PI+ ++L    G  +    + +      L ++G++V       V       
Sbjct: 320 FQLVPG-NHPIIPVML----GDAQLATNMAD-----HLLQEGIYVVGFSYPVV------- 362

Query: 443 DKCRLPVG---IRLFVSAAHSEADLVKACESLKRI 474
                P+G   IR+ +SA H++  L +A E+  ++
Sbjct: 363 -----PMGKARIRVQMSAVHTQQQLDRAIEAFGQV 392

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score =  304 bits (781), Expect = e-100
 Identities = 112/391 (28%), Positives = 182/391 (46%), Gaps = 32/391 (8%)

Query: 92  EPPVLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           E  ++ SA     T+  G  V+NF + NYLGL  H  L+ +  + ++ +G G    R   
Sbjct: 27  EERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT D H + E ++A FLG  D+ILYS                 D I++D   H  I +G+
Sbjct: 87  GTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV 146

Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
            L ++    + +NDM  L   L+       R       I  + V+   G IA L  +  L
Sbjct: 147 RLCKAKRYRYANNDMQELEARLKEAREAGAR----HVLIATDGVFSMDGVIANLKGVCDL 202

Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA 329
            +KY   V +D+S++ G +G +GRG  E+C V   ++DI+T  +G AL    GG+     
Sbjct: 203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARK 261

Query: 330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG 389
            VV+  R  S  Y+FS SL P + +A+I  ++++E   +L  +L  N    R  +S   G
Sbjct: 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-G 320

Query: 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLD 443
            ++A   +  I+ ++L    G      +         L+++G++V      V  K     
Sbjct: 321 FTLA-GADHAIIPVML----GDAVVAQKFAR-----ELQKEGIYVTGFFYPVVPK----G 366

Query: 444 KCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
           + R    IR  +SAAH+   + +A E+  RI
Sbjct: 367 QAR----IRTQMSAAHTPEQITRAVEAFTRI 393

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score =  292 bits (749), Expect = 5e-95
 Identities = 88/391 (22%), Positives = 155/391 (39%), Gaps = 43/391 (10%)

Query: 95  VLESAAGPHTII---SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
              +  G H ++   +  + +   S +YL L  H  +      +L +          F  
Sbjct: 42  FDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQ 101

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
                   E R+AKF G  + +L   G +     +   C+    +  D   H  +  G  
Sbjct: 102 NDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGAR 161

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
            + +    F HN+ D LR  ++      +    +   IVV+++Y   G IAPL EL+ + 
Sbjct: 162 YANAQAHPFMHNNCDHLRMLIQ------RHGPGI---IVVDSIYSTLGTIAPLAELVNIS 212

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
           +++   + +DES+S G  G +G GL    G+   ++  +TA++    A   G    +  V
Sbjct: 213 KEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEV 271

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
                  S   +FS++L PY A+   T ++++E   +    L +    LR GLS + GL+
Sbjct: 272 NRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLT 330

Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
           I S  ES I+ L           D +  E + D  L+ +GVF                  
Sbjct: 331 IRS--ESQIIGLET--------GDERNTEKVRD-YLESNGVFGSVFCRPA---------- 369

Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
                  IRL +++  ++  + K  E     
Sbjct: 370 TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDA 400

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score =  280 bits (719), Expect = 9e-91
 Identities = 99/391 (25%), Positives = 167/391 (42%), Gaps = 41/391 (10%)

Query: 94  PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
             +   AG   +   ++ +NF+S +YLGL  H +++ +     E++G+GS G     G  
Sbjct: 24  YPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
            VH   E  +A++LG   ++L+  G +   + I     K D I AD   H  +     LS
Sbjct: 84  VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143

Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
            S +  F HND+  L   L             ++ +V E V+   G  APL E+ ++ ++
Sbjct: 144 PSQLRRFAHNDVTHLARLLASPCPG-------QQMVVTEGVFSMDGDSAPLAEIQQVTQQ 196

Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
           +   + +D+++  GV+G  GRG      V   K +++    G      G     S+ V D
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPELLVVTFGKGFGVSGAAVLCSSTVAD 253

Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLS 391
           +    +   ++S S+PP  A A   ++ V+  +E      KL       R G+ D    +
Sbjct: 254 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-LPFT 312

Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
           +A +  S I  LI+    G     LQL E      L++ G +V      T          
Sbjct: 313 LA-DSCSAIQPLIV----GDNSRALQLAE-----KLRQQGCWVTAIRPPT---------- 352

Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
           +P G   +RL ++AAH   D+ +  E L   
Sbjct: 353 VPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401

 Score =  267 bits (685), Expect = 2e-85
 Identities = 99/404 (24%), Positives = 168/404 (41%), Gaps = 56/404 (13%)

Query: 95  VLESAAGPH-------TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPR 147
            +E   G              +++  +   +YLG+  H  +L +   ALE  G GS G R
Sbjct: 25  DIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTR 84

Query: 148 GFYGTIDVHLDCEARIAKFLGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADE 200
              GT   H   EA IA       ++++S         LST+    P     G +I +D 
Sbjct: 85  NISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDS 139

Query: 201 GVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ 260
             H  +  G+  +      F+HND+  LR  +     D        + I  E+VY   G 
Sbjct: 140 LNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAA--DDPAA----PKLIAFESVYSMDGD 193

Query: 261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 320
             P+ E+  + E++    ++DE ++ G+ G  G G+ E  G+ + +IDI    +  A   
Sbjct: 194 FGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGV 252

Query: 321 EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTA 378
            GG+   SAR+VD  R  + G++FS SLPP +A+ A  +I  L+  E   L    + +  
Sbjct: 253 FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAK 312

Query: 379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV--- 435
           +L+  L  + G+ I  +  S IV +++         D    + ++D  L + GV+V    
Sbjct: 313 VLKMRLKAL-GMPIIDHG-SHIVPVVI--------GDPVHTKAVSDMLLSDYGVYVQPIN 362

Query: 436 --TSKRSMLDKCRLPVG---IRLFVSAAHSEADLVKACESLKRI 474
             T          +P G   +R   S  H    +     ++  +
Sbjct: 363 FPT----------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 396

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 55/348 (15%), Positives = 98/348 (28%), Gaps = 95/348 (27%)

Query: 157 LDCE------------ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD--EGV 202
            DC+              I   + + D++  +  L            K + +V    E V
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSKQEEMVQKFVEEV 86

Query: 203 HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA 262
                N  +L            M  ++      T   + +   R YI       N  Q+ 
Sbjct: 87  L--RINYKFL------------MSPIK------TEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH----CGVPVDKIDIVTAAMGHAL 318
               + RL+   + R  L E      L R  + +        G    K           +
Sbjct: 127 AKYNVSRLQPYLKLRQALLE------L-RPAKNVLIDGVLGSG----K---------TWV 166

Query: 319 ATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA 378
           A +             Q       +F  +L         +   VLE    L+ ++  N  
Sbjct: 167 ALD------VCLSYKVQCKMDFK-IFWLNL-----KNCNSPETVLEMLQKLLYQIDPNW- 213

Query: 379 ILRTGLSDIHGLSIASNPESP---IVFLILEKSTGSMKNDLQLLEDIAD-WALKE-DG-- 431
              T  SD H  +I     S    +  L+  K     +N L +L ++ +  A    +   
Sbjct: 214 ---TSRSD-HSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 432 -VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478
            + + T  + + D   L       +S  H    L    E    +   +
Sbjct: 267 KILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYL 311

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 53/343 (15%), Positives = 102/343 (29%), Gaps = 94/343 (27%)

Query: 8   FVNTMLNRVKLALDSPSAGAVV--FGVHISGHLFVEVLLL----VVILFLLSQKSYKPP- 60
             +       L L +         F +        ++LL      V  FL +  +     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISL 291

Query: 61  ---KRPLTKKEIDELCDEWV---PESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNF 114
                 LT  E+  L  +++   P+ L P   E +   P  L       +II  + + + 
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL-PR--EVLTTNPRRL-------SII-AESIRDG 340

Query: 115 AS-ANYLGLIGHEKL---LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLGT 169
            +  +    +  +KL   +ES  + LE         R  +  + V     A I    L  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPP-SAHIPTILL-- 392

Query: 170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADE-----GVHWGIQNGLYLSRSTVVYFKHND 224
             S+++   + +    +     K  L+          +       +YL            
Sbjct: 393 --SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLE----------- 434

Query: 225 MDSLRNTLERVTADNKRA--KKL-RRYIVVEAVYQNSGQIAPLD-----------ELIRL 270
                    +V  +N+ A  + +   Y + +    +      LD           + I  
Sbjct: 435 --------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 271 KEKYR-FR-VFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVT 311
            E+   FR VFLD    F  L +  R  +         ++ + 
Sbjct: 487 PERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQ 525

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 65/448 (14%), Positives = 124/448 (27%), Gaps = 133/448 (29%)

Query: 60  PKRPLTKKEIDELCDE-----------WV----PESLIPPIIEE-MRCEPPVLESAAGPH 103
           PK  L+K+EID +              W      E ++   +EE +R     L S     
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 104 TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG-FYGTIDVHLDCEAR 162
                     +           ++L         KY V     R   Y  +   L  E R
Sbjct: 102 QRQPSMMTRMYIEQ-------RDRLYND-NQVFAKYNV----SRLQPYLKLRQAL-LELR 148

Query: 163 IAKFLGTPDSILY---SYGLSTMFSAIPCFCKKGDLIVA-DEGVHW---G---------- 205
            AK +     ++      G + +   +   C    +    D  + W              
Sbjct: 149 PAKNV-----LIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 206 IQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLD 265
           +   L          + +   +++  +  + A      +LRR +     Y+N        
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ELRRLL-KSKPYENC------- 246

Query: 266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV---DK--IDIVTAAMGHALAT 320
            L+ L      + +    N+F +           C + +    K   D ++AA    ++ 
Sbjct: 247 -LLVLLNVQNAKAW----NAFNL----------SCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 321 E---GGFCTGS-----ARVVDHQRLSSSGYVFSASLP-------PYLASAAITAIDVLEE 365
           +                + +D +            LP       P    + I     + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCR---------PQDLPREVLTTNP-RRLSIIAE--SIRD 339

Query: 366 NPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESP----IVFLILEKSTGSMKNDLQLLE 420
                   K    +    L+ I   S+    P           +   S       L L+ 
Sbjct: 340 GLATWDNWKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI- 395

Query: 421 DIADWA-LKEDGVFVVTS---KRSMLDK 444
               W  + +  V VV +   K S+++K
Sbjct: 396 ----WFDVIKSDVMVVVNKLHKYSLVEK 419

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 48/368 (13%), Positives = 100/368 (27%), Gaps = 55/368 (14%)

Query: 135 ALEKYGVG--SCGPRGFYG-----TIDVHLDCEARIAKFLGTPDSILYSYGLST-MFSAI 186
           AL ++G G   C            T  +H     ++ KFLG  D    + G     F+ +
Sbjct: 28  ALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-DVARVTNGAREAKFAVM 86

Query: 187 PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLR 246
               KK   +V DE  H+        +   +      D      T E      +  KK  
Sbjct: 87  HSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG 146

Query: 247 RYIVVEAVYQNS---GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP 303
             ++   +       G +  + ++ ++  +Y   + ++ + + G +             P
Sbjct: 147 EVVLA-LITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-------------P 192

Query: 304 VDKIDI---VTAAMGHALA---TEGGFCTGSARVVDHQRLSSSGY---------VFSASL 348
           V   +I        GH         G         +     S  Y           +   
Sbjct: 193 VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGA 252

Query: 349 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                 A   +   + E      +  +        +  +    +  NP           +
Sbjct: 253 TIITLMA---SFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNP----------HN 299

Query: 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL-FVSAAHSEADLVKA 467
              M    ++L +I+  A           K   +   +  +       +   S+ ++   
Sbjct: 300 HDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYV 359

Query: 468 CESLKRIS 475
             + K I 
Sbjct: 360 LNAFKEII 367

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 18/195 (9%)

Query: 176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERV 235
           + G+ ++  +   F +K   I+    VH  + + L +S+    +        L N   +V
Sbjct: 82  TSGILSVIQS---FSQKKGDILMARNVHKSVLHALDISQQEGHFI-ETHQSPLTNHYNKV 137

Query: 236 TADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS--FGVLGRSG 293
                     +  ++    Y   G+   ++E+I+   +    V +DE++   FG+ G   
Sbjct: 138 NLSRLNNDGHKLVVLTYPNYY--GETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPD 195

Query: 294 RGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPY 351
             L  +        D V  +    L   T G            + +      F  S P Y
Sbjct: 196 STL--NYQA-----DYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSY 248

Query: 352 LASAAI-TAIDVLEE 365
           L  A++ +A    + 
Sbjct: 249 LIMASLESAAQFYKT 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	483
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.98
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.98
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.98
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.98
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.98
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.98
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.97
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.97
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.97
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.97
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.97
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.97
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.97
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.96
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.96
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.96
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.96
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.96
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.96
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.96
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.96
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.96
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.96
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.93
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.95
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.95
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.95
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.95
1svv_A	359	Threonine aldolase; structural genomics, structura	99.95
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.95
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.95
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.95
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.95
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.95
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.95
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.95
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.95
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.95
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.95
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.95
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.94
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.94
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.94
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.94
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.94
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.94
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.94
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.94
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.94
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.94
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.94
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.94
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.94
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.94
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.94
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.94
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.93
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.93
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.93
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.93
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.93
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.93
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.93
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.93
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.93
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.93
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.93
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.93
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.93
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.93
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.93
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.93
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.93
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.92
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.92
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.92
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.92
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.92
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.92
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.92
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.92
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.92
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.91
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.91
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.91
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.91
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.91
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.91
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.9
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.9
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.9
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.9
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.9
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.89
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.88
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.88
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.87
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.86
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.85
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.85
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.85
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.84
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.84
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.83
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.83
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.81
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.8
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.78
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.75
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.71
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.68

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=8.4e-48  Score=394.46  Aligned_cols=369  Identities=28%  Similarity=0.484  Sum_probs=322.2

Q ss_pred             CCccc-cCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567           93 PPVLE-SAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD  171 (483)
Q Consensus        93 ~~~i~-~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~  171 (483)
                      +.+++ +++|.+++.||+++|||++++|+|+..+|++.+++.+++++++.++++++..+|..+.+.++++.|++++|.++
T Consensus        47 ~~~~~~~~~g~~~~~~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~  126 (427)
T 2w8t_A           47 AIVMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG  126 (427)
T ss_dssp             CCCCSEEEETTEEEETTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred             eeeccccCCCceEeeCCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc
Confidence            45678 99999999999999999999999976899999999999999888888888888888999999999999999999


Q ss_pred             EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ++++++|++|+..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++...      .++++|++
T Consensus       127 ~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~------~~~~~v~~  200 (427)
T 2w8t_A          127 AIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPK------EPAKLVVL  200 (427)
T ss_dssp             EEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCS------SSCEEEEE
T ss_pred             eEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccC------CCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999976422      13789999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV  331 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~  331 (483)
                      +++++++|.+.|+++|+++|++||+++|+||+|+.|+++++|+++.+++++. .++|++++|++|++|..|||+++++++
T Consensus       201 ~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~gG~v~~~~~l  279 (427)
T 2w8t_A          201 EGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPK  279 (427)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCCEEEEECCTT
T ss_pred             cCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCCCEEEeCHHH
Confidence            9999999999999999999999999999999999999998889988888886 467999999999999889999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~i~~l~l~~~~~  410 (483)
                      ++.++.....+.|+++.+|..++++.++++.+++.++++++++++.+++++.|+++ |+++..++ .++++++.+.+   
T Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---  355 (427)
T 2w8t_A          280 FEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED---  355 (427)
T ss_dssp             GGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS---
T ss_pred             HHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC---
Confidence            98887665567777788999999999999988765779999999999999999987 88876344 67898888842   


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                           .....++++.++++ ||++.+..++.++..  ...+|++++..+|++|+++++++|+++++++..
T Consensus       356 -----~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~--~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          356 -----QEQAAMMWQALLDG-GLYVNMARPPATPAG--TFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             -----HHHHHHHHHHHHHT-TEECEEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----HHHHHHHHHHHHHC-CeEEeeeCCCCCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence                 22345677776654 999998776554221  235999999999999999999999999887643

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=4.9e-44  Score=362.39  Aligned_cols=369  Identities=30%  Similarity=0.550  Sum_probs=318.6

Q ss_pred             CCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567           92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD  171 (483)
Q Consensus        92 ~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~  171 (483)
                      .++++++++|.+++.+|++||||++++++|+..+|++.+++.+++++++.++++++..+|+.+...++++++++++|.++
T Consensus        26 ~~~~~~~~~g~~v~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~  105 (399)
T 3tqx_A           26 SERIITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD  105 (399)
T ss_dssp             CCCCBCSCSSSEEEETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE
T ss_pred             ccccccCCCCceEeeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc
Confidence            36778999999999999999999999999966889999999999999988888888888999999999999999999999


Q ss_pred             EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++++|++|+..+++++.++||.|+++.++|.++..+++..+.+++.++++|+++|++.+++....    ..++++|++
T Consensus       106 ~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~v~~  181 (399)
T 3tqx_A          106 TILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEK----GARFKLIAT  181 (399)
T ss_dssp             EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTT----TCSSEEEEE
T ss_pred             EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhcc----CCCceEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999875431    113789999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~  330 (483)
                      +++++++|.+.|+++|+++|++||+++|+||+|+.|.++.+|.+..+.+++. .++|++++|++|+++ +.|||++++++
T Consensus       182 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~  260 (399)
T 3tqx_A          182 DGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVA-DRVDILTGTLGKALGGASGGYTSGHKE  260 (399)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCT-TCCSEEEEESSSSSCSSCCEEEEECHH
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC-CCCcEEEecchHhcccCceEEEEcCHH
Confidence            9999999999999999999999999999999998887888777777777763 345899999999998 88999999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +++.++.....+.++++.++..++++.++++.+ +..++.+++++++.+++.+.|+++ |+++. .+.++++++.++.  
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--  336 (399)
T 3tqx_A          261 IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD--  336 (399)
T ss_dssp             HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC--
T ss_pred             HHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC--
Confidence            999988776677777788999999999999988 444678999999999999999887 77776 4578888888742  


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                            .....++++.+++ +||.+.+..++..+..  +..+|++++..+|++|+++++++|+++++++
T Consensus       337 ------~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          337 ------AQLATNMADHLLQ-EGIYVVGFSYPVVPMG--KARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             ------HHHHHHHHHHHHH-TTEECCEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHHHH-CCCEEeeeCCCCCCCC--CceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence                  1234567777665 5999987665432111  2359999999999999999999999998764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=1.3e-44  Score=368.58  Aligned_cols=357  Identities=24%  Similarity=0.319  Sum_probs=310.3

Q ss_pred             ccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEe
Q 011567           97 ESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY  175 (483)
Q Consensus        97 ~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~  175 (483)
                      .++.+.+++ .+|++||||++++|+|+..+|++.+++.+++++|+.+..+++..+|+.+...++++++++++|.+.++++
T Consensus        46 ~~~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~  125 (409)
T 3kki_A           46 KNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLS  125 (409)
T ss_dssp             TTSSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEE
T ss_pred             cCCCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEe
Confidence            344555555 5899999999999999988999999999999999988888888899888899999999999999999999


Q ss_pred             cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ++|++++..++++++++||.|+++.++|.++..++...+.+++.++++|+++|++.+++.         ++++|++++++
T Consensus       126 ~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~---------~~~~vi~~~~~  196 (409)
T 3kki_A          126 QSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH---------GPGIIVVDSIY  196 (409)
T ss_dssp             SCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH---------CSCEEEEESBC
T ss_pred             cchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc---------CCeEEEECCCC
Confidence            999999999999999999999999999999999999999999999999999999998763         25799999999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQ  335 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~  335 (483)
                      +++|.+.|+++|+++|++||++||+||+|+.|.+|++|.++.+.+++. .++|++++|++|++++.|||+++++++++.+
T Consensus       197 nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~  275 (409)
T 3kki_A          197 STLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRAGAIWCNNEVNRCV  275 (409)
T ss_dssp             TTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEESSSGGGTH
T ss_pred             CCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCceEEEECHHHHHHH
Confidence            999999999999999999999999999999999999888887777774 4679999999999998899999999998888


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +....++.|+++.++..++++.++++.+++.++++++++++.+++.+.|+++ ++++.  +.++++++.+..        
T Consensus       276 ~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~--------  344 (409)
T 3kki_A          276 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD--------  344 (409)
T ss_dssp             HHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES--------
T ss_pred             HHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC--------
Confidence            7766677788888999999999999998776778999999999999999987 77765  478889888842        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .....++++.++++ ||++.+..++..+..  +..+|++++..+|++|+++++++|+++++.
T Consensus       345 ~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          345 ERNTEKVRDYLESN-GVFGSVFCRPATSKN--KNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHHHHHHT-TEECEEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-CceEeeeCCCCcCCC--CcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            12344677776655 999988765433211  245999999999999999999999998865

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=1.9e-42  Score=351.43  Aligned_cols=370  Identities=29%  Similarity=0.479  Sum_probs=308.4

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT  169 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~  169 (483)
                      ..|.++++++|.+++ .+|++||||++++++|+..+|++.+++.+++++|+.++++++..+|+.+...+++++|++++|.
T Consensus        26 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~  105 (401)
T 1fc4_A           26 KEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM  105 (401)
T ss_dssp             CCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC
T ss_pred             eeeeeeccCCCceEEeeCCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC
Confidence            346788999999999 4999999999999999767899999999999998876665555556678889999999999999


Q ss_pred             CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       170 e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++.+++++|++++..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++...+    ..++++|
T Consensus       106 ~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~v  181 (401)
T 1fc4_A          106 EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREA----GARHVLI  181 (401)
T ss_dssp             SEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHT----TCSSEEE
T ss_pred             CcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhcc----CCCceEE
Confidence            888999999999999999999999999999999999999999999999999999999999998764321    0126789


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeecc
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGS  328 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~  328 (483)
                      +++++++++|.+.|+++|+++|++||+++|+||+|+.|..+++|+++.+++++.+ ++|++++|++|++ |+.|||++++
T Consensus       182 ~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~gG~~~~~  260 (401)
T 1fc4_A          182 ATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASGGYTAAR  260 (401)
T ss_dssp             EEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSCEEEEEC
T ss_pred             EEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCCEEEEcC
Confidence            9999999999999999999999999999999999986666666776666677764 6799999999999 7779999999


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      +++++.++.....+.++.+.++..++++.++++.+++.++.+++++++.+++.+.|+++ ++++. ++.++++++.+++ 
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-  337 (401)
T 1fc4_A          261 KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD-  337 (401)
T ss_dssp             HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC-
T ss_pred             HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC-
Confidence            99999887655455556677899999999999988765678999999999999999987 77776 4578888888742 


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                             .....++.+.+++ +||.+.+...+..+..  ...+|++++..+|++|+++++++|+++++++
T Consensus       338 -------~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          338 -------AVVAQKFARELQK-EGIYVTGFFYPVVPKG--QARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             -------HHHHHHHHHHHHH-TTEECCEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -------hHHHHHHHHHHHH-CCcEEeeecCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   1224467776555 5999988765433111  2349999999999999999999999998764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=2.2e-43  Score=359.64  Aligned_cols=372  Identities=15%  Similarity=0.155  Sum_probs=279.4

Q ss_pred             HHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCC
Q 011567           68 EIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGS  143 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~  143 (483)
                      +.-+.-.++.|-..-.++.. -.+.|.++++++|+|+| +|||+||||.++   +.+|| +||+|.+|+.+++++...  
T Consensus        46 ~~~~~a~~~~pgg~~~~~~~-~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~~~--  121 (454)
T 4ao9_A           46 RQFEAQARYMPGANSRSVLF-YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGGIN--  121 (454)
T ss_dssp             HHHHHHTTTSGGGCSSGGGC-CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTCSC--
T ss_pred             HHHHHHhhhCCCCCCCCccc-cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcCCC--
Confidence            34444455555433222111 12358889999999999 899999999986   78999 899999999999987422  


Q ss_pred             CCCCCcccChHHHHHHHHHHHhhhCC-CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhc-----C
Q 011567          144 CGPRGFYGTIDVHLDCEARIAKFLGT-PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS-----R  214 (483)
Q Consensus       144 ~~~~~~~g~~~~~~~l~~~La~~~g~-e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s-----~  214 (483)
                           +.+....+.+++++|+++++. +.+.+++||++|+++|++.   +++|.++|.++..||+.+.......     .
T Consensus       122 -----~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~  196 (454)
T 4ao9_A          122 -----LTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVP  196 (454)
T ss_dssp             -----CCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCC
T ss_pred             -----ccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCC
Confidence                 222345678999999999864 5566669999999999754   6789999999999998765443332     2


Q ss_pred             CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567          215 STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG  290 (483)
Q Consensus       215 ~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg  290 (483)
                      .....+++||.+.+++.+++...+       +++|++||+++++|.+.|    |++|+++|++||++||+||+++ |++|
T Consensus       197 ~~~~~~p~nd~~~l~~~l~~~~~~-------iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G  268 (454)
T 4ao9_A          197 FDFLVLPYNDAQTARAQIERHGPE-------IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLA  268 (454)
T ss_dssp             SEEEEECTTCHHHHHHHHHHTGGG-------EEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGS
T ss_pred             CCcccCCCchHHHHHHHHhhcCCc-------eEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCc
Confidence            356678999999999999886654       899999999999999988    9999999999999999999998 4555


Q ss_pred             CCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee--cCCCcHHHHHHHHHHHHHHhcC
Q 011567          291 RSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF--SASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       291 ~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f--s~~~~p~~~aaa~~al~~l~~~  366 (483)
                      .  .|..+++|+.|   ||+  +++|++|.  +.|.+++++++++.+......+.+  +.+.||++|++++++|+.+++ 
T Consensus       269 ~--~~a~e~~gv~P---Di~--t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-  340 (454)
T 4ao9_A          269 P--HGLANKLGIRS---DLT--TLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-  340 (454)
T ss_dssp             T--TCHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-
T ss_pred             c--ccchhccCCCC---cEE--EeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-
Confidence            3  34468999998   888  79999972  235577899999988654322222  224699999999999999975 


Q ss_pred             cHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCC-C----chhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          367 PDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTG-S----MKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~-~----~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      +++.+++.+++++|+++|+++.   ++.......+.++.+.+..... .    ...+......+...+++ +||++.+. 
T Consensus       341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~-  418 (454)
T 4ao9_A          341 PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPR-  418 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTT-
T ss_pred             cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCC-
Confidence            5689999999999999997641   2222223357788887743211 1    11234455667777776 49998643 


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                                  -++.++..||++|||++++++++++.+.
T Consensus       419 ------------~~~~~s~~~T~~dId~~l~al~~~l~~~  446 (454)
T 4ao9_A          419 ------------GFVVLSLPLTDADIDRYVAAIGSFIGGH  446 (454)
T ss_dssp             ------------CEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ------------CCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence                        2456777899999999999999999764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=3.1e-42  Score=347.77  Aligned_cols=360  Identities=25%  Similarity=0.369  Sum_probs=300.8

Q ss_pred             CCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567           92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD  171 (483)
Q Consensus        92 ~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~  171 (483)
                      .|.++++++|.+++.+|++||||+++.++|+..+|++.+++.+++++++.+.+.++..+|..+...++++.|++++|.++
T Consensus        22 ~~~~~~~~~g~~~~~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~  101 (384)
T 1bs0_A           22 RRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR  101 (384)
T ss_dssp             CCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred             ccccccCCCCceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc
Confidence            46778999999999999999999999778865789999999999998877666666666777889999999999999998


Q ss_pred             EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++++|++++..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++...       .+++|++
T Consensus       102 ~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~-------~~~~v~~  174 (384)
T 1bs0_A          102 ALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP-------GQQMVVT  174 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCS-------SCEEEEE
T ss_pred             EEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCC-------CCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999998865321       2689999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV  331 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~  331 (483)
                      +++++++|.+.|+++|+++|++||+++|+||+|+.|.++++|.++.+.++..   +|++++|++|++|+.|||+++++++
T Consensus       175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~---~di~~~s~sK~~~~~GG~~~~~~~~  251 (384)
T 1bs0_A          175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVK---PELLVVTFGKGFGVSGAAVLCSSTV  251 (384)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCC---CSEEEEESSSTTSSCCEEEEECHHH
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCC---CcEEEeeccchhhccCcEEEeCHHH
Confidence            9999999999999999999999999999999999887776666655556543   4899999999999889999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      ++.++.....+.++++.+++.++++.++++.++  ..++.+++++++.+++.+.|+++ ++++.. +.++++++.++.  
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--  327 (384)
T 1bs0_A          252 ADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGD--  327 (384)
T ss_dssp             HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEES--
T ss_pred             HHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCC--
Confidence            988876554566666778999999999998886  33568899999999999999987 787763 467777777731  


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                            .....++.+.+++ +||.+.+...+..+..  ...+|++++..+|++|+++++++|+++
T Consensus       328 ------~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~--~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          328 ------NSRALQLAEKLRQ-QGCWVTAIRPPTVPAG--TARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             ------HHHHHHHHHHHHH-TTEECCEECTTSSCTT--CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHH-CCcEEEeecCCCCCCC--CceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence                  1224467776655 5999988765432111  245999999989999999999999864

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=4.1e-42  Score=351.84  Aligned_cols=378  Identities=18%  Similarity=0.249  Sum_probs=284.1

Q ss_pred             HHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCC
Q 011567           67 KEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVG  142 (483)
Q Consensus        67 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g  142 (483)
                      +++-+..++..|....       +..|.++++++|.|+| +|||+||||.++   +.+|| +||+|.+|+.+|++++...
T Consensus        28 ~~l~~r~~~~~~~~~~-------~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~   99 (456)
T 4atq_A           28 QALAERRSAVVAAGVA-------SGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHT   99 (456)
T ss_dssp             HHHHHHHHHHBCTTCC-------CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHhCCCCCC-------CCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCc
Confidence            4555555556554432       3457889999999999 899999999986   78999 8999999999999986432


Q ss_pred             CCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-
Q 011567          143 SCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS-  215 (483)
Q Consensus       143 ~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~-  215 (483)
                      +    .++.+.+...+|.++|+++++.   +.+++++||++|++.|++   .+++|..+|.++..||+.+..++.+++. 
T Consensus       100 ~----~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~  175 (456)
T 4atq_A          100 C----FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKA  175 (456)
T ss_dssp             T----TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCC
T ss_pred             c----cCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCc
Confidence            1    1233457788999999999864   356677999999999975   5678999999999999988766665432 


Q ss_pred             ------------eEEEecCC-----------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHH
Q 011567          216 ------------TVVYFKHN-----------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELI  268 (483)
Q Consensus       216 ------------~v~~~~~~-----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~  268 (483)
                                  .+..++.+           +.+.+++.++.....  ..+.++++|++||+++++|.+.|    |++|+
T Consensus       176 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr  253 (456)
T 4atq_A          176 MPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ--IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALS  253 (456)
T ss_dssp             TTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHH--TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred             cccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHh--hcCCceEEEEeccccCCCCccccchhhhHHHH
Confidence                        23333322           344444444433211  12235899999999999998876    99999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS  345 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs  345 (483)
                      ++|++||++||+||++++  +|++|.++ .+++|+.|   ||+  +++|++|.  +-|.+++++++++.+....++.+|+
T Consensus       254 ~lc~~~gillI~DEV~tG--~GRtG~~~a~e~~gv~P---Div--t~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~  326 (456)
T 4atq_A          254 EWAKEKGIVFIADEVQSG--FCRTGEWFAVDHEGVVP---DII--TMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYG  326 (456)
T ss_dssp             HHHHHHTCEEEEECTTTT--TTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS
T ss_pred             HHHhhcCCceEecccccc--cCCccccccccccCCCC---chh--hhhhcccCcCCceeeEecHHHHhcccccCCCCCCC
Confidence            999999999999999986  46667655 58999998   898  79999971  1245778999999887776676776


Q ss_pred             CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC------Cceeec--CCCCCEEEEEecCCCCCchhhHH
Q 011567          346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------GLSIAS--NPESPIVFLILEKSTGSMKNDLQ  417 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~------~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~  417 (483)
                      +  ||+.|++++++|+++++++ +.+++++..++++++|+++.      ..++.+  ...+.++.+.+..+. ....+..
T Consensus       327 g--npla~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~  402 (456)
T 4atq_A          327 G--NPVACAAALAAIDTMEQHD-LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAE  402 (456)
T ss_dssp             S--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHH
T ss_pred             C--ChHHHHhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHH
Confidence            5  8999999999999998754 88999999999998887641      112221  235778888886543 2233455


Q ss_pred             HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          418 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       418 ~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ...++...|+++ |+++.+....       ...|||+|++.+|++|||+++++|++++++
T Consensus       403 ~~~~v~~~~~~~-Gvl~~~~g~~-------~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          403 LTKAVAAACLKE-GVIILTCGTY-------GNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHHHHT-TEECEEECTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCEEEecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            677888887765 9998764321       134999999999999999999999999875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=3.8e-41  Score=341.53  Aligned_cols=368  Identities=29%  Similarity=0.524  Sum_probs=305.8

Q ss_pred             cCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC
Q 011567           91 CEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP  170 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e  170 (483)
                      ..|.++++++|.+++.+|++++||++++++|+..+|.+.+++.+++++++.+.++++...|..+...++++.+++++|.+
T Consensus        25 ~~~~~~~~~~g~~~~~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~  104 (398)
T 3a2b_A           25 AYFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKE  104 (398)
T ss_dssp             CSSCCBCSCSSSEEEETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS
T ss_pred             cceeeecCCCCceEEECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC
Confidence            35678999999999999999999999988888778999999999998876655555556677889999999999999998


Q ss_pred             CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +.+++++|++|+..+++++.++||.|+++.++|.++...++..|.+++.++..|+++|++.+++..+      .++++|+
T Consensus       105 ~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~------~~~~~v~  178 (398)
T 3a2b_A          105 AAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPE------DSAKLIC  178 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCS------SSCEEEE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhcc------CCceEEE
Confidence            8888899999999999999999999999999999999999999999999999999999998875321      1368899


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR  330 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~  330 (483)
                      ++++++++|.+.|+++|+++|++||+++|+||+|+.|.+++++..+.+.+++. +.+|++++|++|++|+.|||++++++
T Consensus       179 ~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~~~GG~~~~~~~  257 (398)
T 3a2b_A          179 TDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDAD  257 (398)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEECHH
T ss_pred             EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCC-cCCeEEEecccccccCCCcEEEeCHH
Confidence            99999999999999999999999999999999999887776666665556653 34599999999999988899999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      +++.++.....+.++.+.++..++++.++++.++...+.+++++++.+++.+.|+++ |+++.. +.++++++.++.   
T Consensus       258 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~~~~~~---  332 (398)
T 3a2b_A          258 VIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA-TESPILPIFIRS---  332 (398)
T ss_dssp             HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS-CCSSEEEEECCC---
T ss_pred             HHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEcCC---
Confidence            998887644345555667788887777888877655678999999999999999987 887764 457888888732   


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                           .....++.+.++++ ||.+.+...+..+.  .+..+|++++..+|++|+++++++|+++++++
T Consensus       333 -----~~~~~~l~~~l~~~-gi~v~~~~~~~~~~--~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          333 -----NEKTFWVTKMLQDD-GVFVNPVVSPAVPA--EESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             -----HHHHHHHHHHHHHT-TEECEEECTTTSCG--GGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHHHC-CcEEEeeCCCCCCC--CCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence                 12244677776665 99999876543211  02449999998899999999999999998764

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=9.6e-42  Score=350.39  Aligned_cols=361  Identities=16%  Similarity=0.182  Sum_probs=273.3

Q ss_pred             ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh
Q 011567           90 RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK  165 (483)
Q Consensus        90 ~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~  165 (483)
                      ...|.+|++++|.|+| +|||+||||.++   +.+|| +||+|.+|+.+|+++....+   ..+..+++...+|+++|++
T Consensus        47 ~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~l~~~~---~~~~~~~~~~~~lAe~L~~  122 (473)
T 4e3q_A           47 QRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGF-DHKGLIDAAKAQYERFPGYH---AFFGRMSDQTVMLSEKLVE  122 (473)
T ss_dssp             HHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCS-CCHHHHHHHHHHHHHCCCCC---CCTTEEEHHHHHHHHHHHH
T ss_pred             cCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccC-CCHHHHHHHHHHHHhccccc---ccccccCHHHHHHHHHHHh
Confidence            4458889999999999 899999999987   78999 89999999999999854211   1122246788899999999


Q ss_pred             hhC--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEecCC
Q 011567          166 FLG--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST-----------VVYFKHN  223 (483)
Q Consensus       166 ~~g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~~~~  223 (483)
                      .++  .+.+++.+||++|++.|++..         +++..+|.+...||+.+..++.+++..           ...++..
T Consensus       123 ~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p  202 (473)
T 4e3q_A          123 VSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCP  202 (473)
T ss_dssp             HSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCC
T ss_pred             hCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCC
Confidence            986  456777799999999998753         345678999999999887777666531           1222211


Q ss_pred             ------C------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEe
Q 011567          224 ------D------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       224 ------d------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~D  281 (483)
                            +            .+++++.+.+...      ..+++|++||+++++|.+.|    |++|+++|++||++||+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~------~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~D  276 (473)
T 4e3q_A          203 HYWRYGEEGETEEQFVARLARELEETIQREGA------DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISD  276 (473)
T ss_dssp             CHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCG------GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhCC------CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEecc
Confidence                  1            2344444444322      35899999999999998877    999999999999999999


Q ss_pred             CccccccccCCCCccc-cccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHh-------cCCceeecCCCcH
Q 011567          282 ESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL-------SSSGYVFSASLPP  350 (483)
Q Consensus       282 Ea~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~-------~~~~~~fs~~~~p  350 (483)
                      |++++  +|+||.++. +++|+.|   ||+  +++|+++.   +-|.+++++++++.+..       ..++++|+  .||
T Consensus       277 EV~tG--fGRtG~~fa~e~~gv~P---Di~--t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~--Gnp  347 (473)
T 4e3q_A          277 EVICG--FGRTGNTWGCVTYDFTP---DAI--ISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS--GHP  347 (473)
T ss_dssp             CTTTS--SSTTSSSCHHHHTTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT--TCH
T ss_pred             Ccccc--CCcccchhHHHhcCCCC---ChH--HhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC--CCc
Confidence            99986  577777664 8999998   898  79999972   12446789999887643       23455554  589


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCC---chhhHHHHHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGS---MKNDLQLLEDIADW  425 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~  425 (483)
                      ++|++++++|+++++++ +.++++++.++|+++|+++...+.+  ....+.++.+.+..+...   .+.+.....++...
T Consensus       348 la~Aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~  426 (473)
T 4e3q_A          348 VGCAIALKAIDVVMNEG-LAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANT  426 (473)
T ss_dssp             HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred             chhhhhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHH
Confidence            99999999999998764 8999999999999999775322111  123567888877433221   12233445677887


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +++ +|+++.+..          ..||++|++.+|++|+|++++++++++++++.+
T Consensus       427 ~~~-~Gll~~~~g----------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae  471 (473)
T 4e3q_A          427 CTD-LGLICRPLG----------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE  471 (473)
T ss_dssp             HHH-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-CCcEEEecC----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            776 599987653          338999999999999999999999999998754

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=2e-40  Score=343.98  Aligned_cols=357  Identities=17%  Similarity=0.204  Sum_probs=275.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||+++   +.+|| +||+|++|+.+++++++.++.    +.++.+.+.+|+++|++++
T Consensus        36 ~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~----~~~~~~~~~~la~~l~~~~  110 (476)
T 3i5t_A           36 AQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVLPYASP----WYMATSPAARLAEKIATLT  110 (476)
T ss_dssp             CCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCT----TTCBCHHHHHHHHHHHTTS
T ss_pred             CCeeEEEeecCEEEECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccc----CccCCHHHHHHHHHHHhcC
Confidence            57889999999999 799999999997   78999 799999999999998655432    1346788999999999999


Q ss_pred             C--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe--cC
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYF--KH  222 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~--~~  222 (483)
                      +  .+.+++++||++|+..|++++         +++.++|+.+..||+.+..++.+++..            +..+  ++
T Consensus       111 ~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  190 (476)
T 3i5t_A          111 PGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN  190 (476)
T ss_dssp             STTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCC
T ss_pred             CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCc
Confidence            5  567777899999999999877         556778999999999887777655432            2222  22


Q ss_pred             -----CC---------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcc
Q 011567          223 -----ND---------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESN  284 (483)
Q Consensus       223 -----~d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~  284 (483)
                           ++         +++||+.+++...+      ++++|++||+++++|.+.|    |++|+++|++||++||+||+|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~------~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~  264 (476)
T 3i5t_A          191 PRHAGNRSQEAFLDDLVQEFEDRIESLGPD------TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVV  264 (476)
T ss_dssp             GGGCTTSCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhcCCC------CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence                 21         77888888754322      4899999999999998776    999999999999999999999


Q ss_pred             ccccccCCCCcc-cc-ccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHHH
Q 011567          285 SFGVLGRSGRGL-TE-HCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPYL  352 (483)
Q Consensus       285 s~g~lg~~G~g~-~~-~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~~  352 (483)
                      ++  +|++|..+ .+ ++++.|   |++  +++|++|+   +-|++++++++++.+...       .+++  +.+.||++
T Consensus       265 ~g--~gr~G~~~~~~~~~~v~p---di~--t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~--t~~~np~a  335 (476)
T 3i5t_A          265 TG--FGRCGEWFASEKVFGVVP---DII--TFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGY--TYSNQPVA  335 (476)
T ss_dssp             TT--TTTTSSSCHHHHTTCCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCC--TTTTCHHH
T ss_pred             cC--CccccCceeeecccCCCc---chh--hhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccC--CCCcCHHH
Confidence            85  56666543 46 889887   787  78999983   126788999999988653       2233  33568999


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHH
Q 011567          353 ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWAL  427 (483)
Q Consensus       353 ~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l  427 (483)
                      ++++.++|+.++++ ++.++++++.+++++.|+++..++..  ..+.+.++.+.+.......   ..+.....++++.++
T Consensus       336 ~aAa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  414 (476)
T 3i5t_A          336 CAAALANIELMERE-GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF  414 (476)
T ss_dssp             HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHH
Confidence            99999999998764 58999999999999999865332211  1346778888875432111   111224567777776


Q ss_pred             HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      + +||++.+..          ..|||+|++.+|++|+++++++|+++++++..
T Consensus       415 ~-~Gv~v~~~g----------~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~  456 (476)
T 3i5t_A          415 E-LGLIVRPLG----------DLCVISPPLIISRAQIDEMVAIMRQAITEVSA  456 (476)
T ss_dssp             H-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-CCCEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6 599998742          23999999999999999999999999988754

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=100.00  E-value=1.2e-40  Score=338.20  Aligned_cols=352  Identities=25%  Similarity=0.411  Sum_probs=290.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      ||++++||.+++++|+..+|++.+++.+++++++.++++++..|+..+...+++++||+++|.++.+++++|++++..++
T Consensus        44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~  123 (401)
T 2bwn_A           44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL  123 (401)
T ss_dssp             CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence            68999999999998887789999999999999877666667778888899999999999999999999999999888888


Q ss_pred             hhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          187 PCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       187 ~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      .++.  ++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++....      ++++|+++++++++|.+.|+
T Consensus       124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~------~~~~v~~~~~~nptG~~~~l  197 (401)
T 2bwn_A          124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPA------APKLIAFESVYSMDGDFGPI  197 (401)
T ss_dssp             HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTT------SCEEEEEESBCTTTCCBCCH
T ss_pred             HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccC------CceEEEEecCcCCCCCcCCH
Confidence            7764  589999999999999999999999999999999999999998764321      37899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF  344 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f  344 (483)
                      ++|+++|++||+++|+||+|+.|.+|++|.|+...+++. +++|++++|++|++|..|||+++++++++.++....++.|
T Consensus       198 ~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~  276 (401)
T 2bwn_A          198 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIF  276 (401)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHT
T ss_pred             HHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcc-ccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCcee
Confidence            999999999999999999999888888887776556653 3458999999999998899999999998887765555666


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI  422 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i  422 (483)
                      +++.++..++++.++++.+++.  ++++++++++.+++.+.|+++ |+++.. +.++++++.++.        .....++
T Consensus       277 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------~~~~~~~  346 (401)
T 2bwn_A          277 STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD--------PVHTKAV  346 (401)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC--------HHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC--------hHHHHHH
Confidence            6666788888888999988764  578899999999999999887 877764 356788887732        1224467


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+.+++++||.+.+...+..+..  ...+|++++..+|++|+++++++|++++++
T Consensus       347 ~~~L~~~~gi~v~~~~~~~~~~~--~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          347 SDMLLSDYGVYVQPINFPTVPRG--TERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             HHHHHHHHCEECCEECTTTSCTT--CCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhcCCEEEeecCCCCCCCC--CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            77665456999987765433111  135999999999999999999999988754

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=6.1e-41  Score=347.29  Aligned_cols=359  Identities=14%  Similarity=0.142  Sum_probs=274.2

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   ++||| +||+|++|+.+++++++.+++.   ..++.+...+|+++|+++
T Consensus        36 ~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~~lae~l~~~  111 (472)
T 3hmu_A           36 EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGY-GRDELAEVAARQMRELPYYNTF---FKTTHVPAIALAQKLAEL  111 (472)
T ss_dssp             HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHCSCCCSS---SSEECHHHHHHHHHHHHH
T ss_pred             CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccccccc---cccCCHHHHHHHHHHHHh
Confidence            357889999999999 799999999997   88999 7999999999999986543322   234567899999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEec---
Q 011567          167 LG--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST-----------VVYFK---  221 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~~---  221 (483)
                      ++  .+++++++||++|++.+++++.         ++.++|+.+..||+....++.+++..           +..++   
T Consensus       112 ~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~  191 (472)
T 3hmu_A          112 APGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN  191 (472)
T ss_dssp             SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC
T ss_pred             CCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc
Confidence            96  4567777999999999998875         36678889999999887777666532           22222   


Q ss_pred             ---CCC-----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          222 ---HND-----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       222 ---~~d-----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                         ++|           +++||+.+++...+      ++++|++||+++++|.+.|    |++|+++|++||++||+||+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~------~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv  265 (472)
T 3hmu_A          192 WWAEGGDMDPEEFGLARARELEEAILELGEN------RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEV  265 (472)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred             cccCCcccCHHHHHHHHHHHHHHHHHhcCCC------CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence               233           67788887654322      4899999999999999887    99999999999999999999


Q ss_pred             cccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHH
Q 011567          284 NSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITA  359 (483)
Q Consensus       284 ~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~a  359 (483)
                      |++  +|++|. +..+++++.|   |++  +++|++++.|   |++++++++++.+......+.++.+.||++++++.++
T Consensus       266 ~~g--fgr~G~~~a~~~~~v~p---di~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aa  338 (472)
T 3hmu_A          266 ICG--FGRTGNWFGTQTMGIRP---HIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALEN  338 (472)
T ss_dssp             TTT--TTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHH
T ss_pred             ccC--CcccCccchhHHhCCCC---cee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHH
Confidence            984  455564 4468889887   787  6899998544   8899999999988322112222335689999999999


Q ss_pred             HHHHhcCcHHHHHHH-HHHHHHHHhhccCCC---ceeecCCCCCEEEEEecCCCCCch---hh-HHHHHHHHHHHHHhCC
Q 011567          360 IDVLEENPDLITKLK-KNTAILRTGLSDIHG---LSIASNPESPIVFLILEKSTGSMK---ND-LQLLEDIADWALKEDG  431 (483)
Q Consensus       360 l~~l~~~~~~~~~l~-~~~~~l~~~L~~~~~---~~i~~~~~~~i~~l~l~~~~~~~~---~~-~~~~~~i~~~~l~~~G  431 (483)
                      |+.+++. ++.++++ ++.+++++.|+++..   +... .+.+.++.+.+........   .+ .....++++.+++ +|
T Consensus       339 L~~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G  415 (472)
T 3hmu_A          339 LRILEEE-NILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NN  415 (472)
T ss_dssp             HHHHHHT-THHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TT
T ss_pred             HHHHHHh-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CC
Confidence            9988764 5889999 999999998876532   2222 3467788888753211000   00 2335577777665 59


Q ss_pred             EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      |++.+..          ..|||+|++.+|++|+++++++|+++++++.
T Consensus       416 v~v~~~g----------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~  453 (472)
T 3hmu_A          416 LIMRHVG----------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ  453 (472)
T ss_dssp             BCCEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9998753          2399999999999999999999999988764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=2.3e-39  Score=332.81  Aligned_cols=365  Identities=20%  Similarity=0.208  Sum_probs=281.7

Q ss_pred             CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC-C--CCCCCCChHHHHHHHHHHHh
Q 011567           63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA-N--YLGLIGHEKLLESCTSALEK  138 (483)
Q Consensus        63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~-~--~lG~~~~p~i~~a~~~~l~~  138 (483)
                      .++.+++.++-.++...++.        ..|.++++++|.++| .||++||||+++ +  .+|| .||++.+|+.+++++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh-~~p~v~~Ai~~~~~~  107 (439)
T 2oat_A           37 PPTSDDIFEREYKYGAHNYH--------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGH-CHPKIVNALKSQVDK  107 (439)
T ss_dssp             CCCHHHHHHHHHHHBCCCCC--------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCB-TCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhcccccC--------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCC-CCHHHHHHHHHHHHh
Confidence            45566665554444332221        236778999999999 799999999995 3  4666 899999999999998


Q ss_pred             cCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHH
Q 011567          139 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQ  207 (483)
Q Consensus       139 ~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~  207 (483)
                      ++..+   +.+  +.+...+++++|++++|.+++++++||++|+..+++++.           +++++|+.+..+|+.+.
T Consensus       108 ~~~~~---~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~  182 (439)
T 2oat_A          108 LTLTS---RAF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTL  182 (439)
T ss_dssp             CSCCC---TTS--EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSH
T ss_pred             cCccc---Ccc--CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCH
Confidence            65322   222  346789999999999998888888999999999998764           23467778888998887


Q ss_pred             hHhhhcC------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc----ChHHHHHHH
Q 011567          208 NGLYLSR------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA----PLDELIRLK  271 (483)
Q Consensus       208 ~g~~~s~------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~----~L~~l~~l~  271 (483)
                      .++.+++            ..+..++++|+++|++.++.  .       ++++|++||+++++|.+.    ++++|+++|
T Consensus       183 ~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  253 (439)
T 2oat_A          183 SAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--P-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELC  253 (439)
T ss_dssp             HHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTS--T-------TEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             hHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCC--C-------CEEEEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence            7777665            46788899999999988852  1       378999999999999876    599999999


Q ss_pred             HHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCC
Q 011567          272 EKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSAS  347 (483)
Q Consensus       272 ~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~  347 (483)
                      ++||++||+||+|++  +|++|+++. +++++.|   |++  |++|++++.   +|++++++++++.++...++.+|  +
T Consensus       254 ~~~gillI~DEv~~g--~g~~g~~~~~~~~~~~~---Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~  324 (439)
T 2oat_A          254 TRHQVLFIADEIQTG--LARTGRWLAVDYENVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--G  324 (439)
T ss_dssp             HHTTCEEEEECTTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSS--T
T ss_pred             HHcCCEEEEeccccC--CccCCcchhHHHhCCCC---cEE--EecccccCCCCCeEEEEECHHHHhccCCCCcccCC--C
Confidence            999999999999963  677777664 7888766   776  899999753   68899999998877654445555  4


Q ss_pred             CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          348 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      .||+.++++.++++.++++ ++.++++++++++++.|+++ ++++.  ..+.++++++.+....+   .   ...++++.
T Consensus       325 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~---~---~~~~l~~~  396 (439)
T 2oat_A          325 GNPLGCRVAIAALEVLEEE-NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKD---W---DAWKVCLR  396 (439)
T ss_dssp             TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSS---C---CHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCcc---H---HHHHHHHH
Confidence            5899999999999988764 58899999999999999886 44421  12467888888854210   0   12357776


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +++ +||++.+..         +..+|++++..+|++|+++++++|++++++
T Consensus       397 l~~-~Gv~v~~~~---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          397 LRD-NGLLAKPTH---------GDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             HHH-TTEECCBSS---------SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHH-CCeEEecCC---------CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            665 599987631         234999999999999999999999988754

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=4.8e-39  Score=331.83  Aligned_cols=374  Identities=18%  Similarity=0.171  Sum_probs=279.5

Q ss_pred             CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-E-CCe--eEEEeecC---CCCCCCCChHHHHHHHHH
Q 011567           63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-I-SGK--EVVNFASA---NYLGLIGHEKLLESCTSA  135 (483)
Q Consensus        63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~-~G~--~~id~~s~---~~lG~~~~p~i~~a~~~~  135 (483)
                      .++.+++.++-.+..-.|+.+..  .....|.++++++|.++| . |||  +||||+++   +++|| +||++.+|+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~  103 (457)
T 3tfu_A           27 GLTPEQIIAVDGAHLWHPYSSIG--REAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQ  103 (457)
T ss_dssp             CCCHHHHHHHHHHHBCCTTCCSS--CCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCccccccc--ccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHH
Confidence            47766655544442212222110  112357789999999999 8 999  99999997   89999 899999999999


Q ss_pred             HHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchh
Q 011567          136 LEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHW  204 (483)
Q Consensus       136 l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~  204 (483)
                      +++.+..+.    ..++.+...+|+++|+++++  .+++++++||++|++.|++++.         ++.++|..+..||+
T Consensus       104 ~~~~~~~~~----~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg  179 (457)
T 3tfu_A          104 LRVMNHVMF----GGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG  179 (457)
T ss_dssp             HHHCSCCCS----SSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCC
T ss_pred             HHhccCccc----cccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCC
Confidence            998643221    12345788999999999995  4567777999999999988774         45568888999999


Q ss_pred             HHHhHhhhcC-------------CeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCccC
Q 011567          205 GIQNGLYLSR-------------STVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIAP  263 (483)
Q Consensus       205 s~~~g~~~s~-------------~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~~  263 (483)
                      .+..++.+++             ..+..++.       +|+++|++.+++...       ++++|++|| +++++|.+.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~-------~~aavi~ep~~~~~~G~~~~  252 (457)
T 3tfu_A          180 DTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG-------ELAAVVVEPVVQGAGGMRFH  252 (457)
T ss_dssp             SSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG-------GEEEEEECSSEECTTTCEEC
T ss_pred             ccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC-------CEEEEEEeCCCcCCCCcccC
Confidence            8777666532             11222222       578889888876433       389999999 8899998887


Q ss_pred             ----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHH
Q 011567          264 ----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQ  335 (483)
Q Consensus       264 ----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~  335 (483)
                          |++|+++|++||++||+||+|++  +|++|.++ .+++++.|   |++  ||||++++   +.|++++++++++.+
T Consensus       253 ~~~~l~~l~~l~~~~gillI~DEv~~g--~gr~G~~~a~~~~~~~p---dii--t~sK~l~gG~~~lG~v~~~~~i~~~~  325 (457)
T 3tfu_A          253 DPRYLHDLRDICRRYEVLLIFDEIATG--FGRTGALFAADHAGVSP---DIM--CVGKALTGGYLSLAATLCTADVAHTI  325 (457)
T ss_dssp             CTHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcCccC--CccccchhHhHhcCCCc---eEE--EEChhhhCCCcceEEEEEcHHHHHHh
Confidence                99999999999999999999985  56667655 47888877   787  89999974   347789999999988


Q ss_pred             Hhc-CC--ceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCC
Q 011567          336 RLS-SS--GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       336 ~~~-~~--~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      ... ..  .+..+.+.||++++++.++|+.++++ ++.++++++.+++++.|+++.   ++... .+.+.++.+.+..+.
T Consensus       326 ~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~  403 (457)
T 3tfu_A          326 SAGAAGALMHGPTFMANPLACAVSVASVELLLGQ-DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPV  403 (457)
T ss_dssp             HHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCC
T ss_pred             hccCCCceeEecCCCcCHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcc
Confidence            532 11  11223356999999999999988764 488999999999999998753   33222 235778888885431


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                           +   ..++++.++++ ||++.+..          ..+|++++..+|++|+++++++|+++++++
T Consensus       404 -----~---~~~~~~~l~~~-Gv~v~~~~----------~~lRi~p~~~~t~eei~~~l~~L~~~l~~~  453 (457)
T 3tfu_A          404 -----D---LAVATPAALDR-GVWLRPFR----------NLVYAMPPYICTPAEITQITSAMVEVARLV  453 (457)
T ss_dssp             -----C---HHHHHHHHHHT-TEECCCBT----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----c---HHHHHHHHHHC-CeEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                 1   34577776664 99987632          349999999999999999999999998764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=7.2e-39  Score=331.24  Aligned_cols=361  Identities=14%  Similarity=0.141  Sum_probs=270.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.+++ .||++||||+++   +++|| +||++.+|+.+++++.+..++   ...++.+...+|+++|++++
T Consensus        33 ~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~  108 (460)
T 3gju_A           33 PTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNLAYYHA---YVGHGTEASITLAKMIIDRA  108 (460)
T ss_dssp             CCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHHSCCCC---CTTCCCHHHHHHHHHHHHHS
T ss_pred             CceEEEEeeccEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHhhC
Confidence            45889999999999 799999999997   88999 899999999999998654322   23456688999999999998


Q ss_pred             C--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCC------------eEEEe----
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRS------------TVVYF----  220 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~----  220 (483)
                      +  .+++++++||++|+..+++++.         ++.++|+.+..||+.+..++.+++.            .+..+    
T Consensus       109 ~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  188 (460)
T 3gju_A          109 PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPY  188 (460)
T ss_dssp             CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCC
T ss_pred             CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCc
Confidence            4  4567777999999999998875         4566788899999888776665442            12222    


Q ss_pred             --cCCC------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          221 --KHND------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       221 --~~~d------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                        +++|            +++||+.+++...+      ++++|++||+++++|.+.|    |++|+++|++||++||+||
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~------~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DE  262 (460)
T 3gju_A          189 YFRRTDRSMSEEQFSQHCADKLEEMILAEGPE------TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADE  262 (460)
T ss_dssp             GGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred             cccCCccccChhHHHHHHHHHHHHHHHhcCCC------CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence              2344            57888887653222      4899999999999998777    9999999999999999999


Q ss_pred             ccccccccCCCC-ccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhc-----CCceeecCCCcHHHH
Q 011567          283 SNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLS-----SSGYVFSASLPPYLA  353 (483)
Q Consensus       283 a~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~-----~~~~~fs~~~~p~~~  353 (483)
                      +|++  +|++|. +..+++++.|   |++  |+||++++.   .|++++++++++.+...     ...+.++.+.||+++
T Consensus       263 v~~g--~gr~g~~~~~~~~~~~p---di~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~  335 (460)
T 3gju_A          263 VVTG--FGRLGTMFGSDHYGIKP---DLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICV  335 (460)
T ss_dssp             TTTT--TTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHH
T ss_pred             cccC--CCcccccchHhhcCCCC---Cee--eeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHH
Confidence            9984  455553 3457888877   777  789999752   37889999999988532     111222335689999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc----CCCceeecCCCCCEEEEEecCCCCC---chhhHHHHHHHHHHH
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSD----IHGLSIASNPESPIVFLILEKSTGS---MKNDLQLLEDIADWA  426 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~----~~~~~i~~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~~  426 (483)
                      +++.++|+.+++. ++.++++++.+++++.|.+    .+.+... .+.+.++.+.+......   ...+.....++++.+
T Consensus       336 aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  413 (460)
T 3gju_A          336 AAGVANLELIDEM-DLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEFVADKDDRVFFDASQKIGPQVATAL  413 (460)
T ss_dssp             HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEEccCccccccccchHHHHHHHHHHH
Confidence            9999999988764 4788888888888877733    3333222 34577888887542211   011223355677776


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ++ +||++.+...        ...|||++++.+|++|+++++++|+++++++..
T Consensus       414 ~~-~Gv~v~~~~~--------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          414 AA-SGVIGRAMPQ--------GDILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             HH-TTEECEECSS--------SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HH-CCeEEecCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            65 5999987541        134999999999999999999999999988764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=1.1e-38  Score=327.29  Aligned_cols=345  Identities=19%  Similarity=0.219  Sum_probs=260.2

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g  168 (483)
                      |.++++++|.++| .||++||||+++   +.+|| .+|++.+|+.++++++...+   +. + +.+...+++++|++++|
T Consensus        48 ~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh-~~p~v~~ai~~~~~~~~~~~---~~-~-~~~~~~~l~~~la~~~g  121 (433)
T 1z7d_A           48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICS---RA-F-FSVPLGICERYLTNLLG  121 (433)
T ss_dssp             EEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCC---TT-S-EEHHHHHHHHHHHHHHT
T ss_pred             CceEEeeecCEEEECCCCEEEEcccchhhcccCC-CCHHHHHHHHHHHHhCCCcc---CC-c-CCHHHHHHHHHHHhhcC
Confidence            5677999999999 799999999995   46677 89999999999998864321   22 2 45788999999999999


Q ss_pred             CCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCH
Q 011567          169 TPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDM  225 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~  225 (483)
                      .++++++++|++|+..+++++.           ++.++|+.+..||+.+..++.+++            ..+..++++|+
T Consensus       122 ~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~  201 (433)
T 1z7d_A          122 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL  201 (433)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCH
T ss_pred             CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCH
Confidence            8888888999999999988753           234567777789988776666654            35677888999


Q ss_pred             HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc----ChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-ccc
Q 011567          226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA----PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHC  300 (483)
Q Consensus       226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~----~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~  300 (483)
                      ++|++.++.  .       ++++|++||+++++|.+.    ++++|+++|++||++||+||+|++  +|++|.++. +++
T Consensus       202 ~~le~~l~~--~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~g~~g~~~~~~~~  270 (433)
T 1z7d_A          202 EALEEELKD--P-------NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG--LGRTGKLLCVHHY  270 (433)
T ss_dssp             HHHHHHHTS--T-------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSGGGGG
T ss_pred             HHHHHHhCC--C-------CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccC--CCcCCcchhhHhc
Confidence            999998851  1       378999999999999876    499999999999999999999973  677777654 778


Q ss_pred             CCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      ++.|   |++  |++|++|+.   +|++++++++++.++...++.+|  +.||+.++++.++++.+++. ++.++++++.
T Consensus       271 ~~~~---di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~  342 (433)
T 1z7d_A          271 NVKP---DVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTY--GGNPLAASICVEALNVLINE-KLCENAEKLG  342 (433)
T ss_dssp             TCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTT--TTCHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred             CCCC---CEE--EECccccCCCCCeEEEEECHHHHhhhccccccccC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence            8766   776  899999843   68899999998877654344444  45899999999999988764 5889999999


Q ss_pred             HHHHHhhccC-CCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          378 AILRTGLSDI-HGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       378 ~~l~~~L~~~-~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      +++++.|+++ .++++.  ..+.++++++.+....       ....++++.+++ +||++.+..         +..+|++
T Consensus       343 ~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~-~Gv~v~~~~---------~~~iRi~  405 (433)
T 1z7d_A          343 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKE-NGLITRDVH---------DKTIRLT  405 (433)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHH-TTEECCEET---------TTEEEEC
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHH-CCeEEecCC---------CCEEEEE
Confidence            9999999764 133211  1246788888885321       013357776665 599998641         2349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ++..+|++|+++++++|+++++++.
T Consensus       406 ~~~~~t~e~i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          406 PPLCITKEQLDECTEIIVKTVKFFD  430 (433)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988763

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=3.8e-39  Score=331.24  Aligned_cols=377  Identities=18%  Similarity=0.161  Sum_probs=284.4

Q ss_pred             CCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecCCC---CCCCCChHHHHHHHHHHHhc
Q 011567           64 LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASANY---LGLIGHEKLLESCTSALEKY  139 (483)
Q Consensus        64 l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~~~---lG~~~~p~i~~a~~~~l~~~  139 (483)
                      ++.+++.+..+++.|....       ...|.++++++|.+++ .+|++||||+++.+   +|| .+|++.+++.++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~   75 (439)
T 3dxv_A            4 MTKALYDRDGAAIGNLQKL-------RFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP   75 (439)
T ss_dssp             --CCHHHHHHHHBCGGGCC-------CSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC
T ss_pred             CcHHHHHHHHHHhccCccC-------CCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc
Confidence            4455666666666554332       1357889999999999 89999999999865   999 8999999999999986


Q ss_pred             CCCCCCCCCcccChHHHHHHHHHHHhhh--CC-CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhc
Q 011567          140 GVGSCGPRGFYGTIDVHLDCEARIAKFL--GT-PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS  213 (483)
Q Consensus       140 g~g~~~~~~~~g~~~~~~~l~~~La~~~--g~-e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s  213 (483)
                      .. .+   ...+..+.+.+++++|++++  +. ++++++++|++|+..++++   +++++++|+++..+|+.+..++.++
T Consensus        76 ~~-~~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~  151 (439)
T 3dxv_A           76 AG-AT---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFS  151 (439)
T ss_dssp             SC-SC---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-
T ss_pred             cC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhc
Confidence            32 11   23456789999999999999  45 5778889999999999987   5688899999999999888877776


Q ss_pred             CCeE--------------EEecCC----------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hH
Q 011567          214 RSTV--------------VYFKHN----------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LD  265 (483)
Q Consensus       214 ~~~v--------------~~~~~~----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~  265 (483)
                      +...              ..++++          |+++||+.+++...      .++++|+++|+++++|.+.|    ++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~------~~~~~vi~~p~~~~~G~~~~~~~~l~  225 (439)
T 3dxv_A          152 GHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPA------GSIGAAFIEPIQSDGGLIVPPDGFLR  225 (439)
T ss_dssp             ------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCT------TCEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred             CCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCC------CCEEEEEEccccCCCCCccCCHHHHH
Confidence            6432              344555          58888888852211      24899999999999999998    99


Q ss_pred             HHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCce
Q 011567          266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGY  342 (483)
Q Consensus       266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~  342 (483)
                      +|+++|++||++||+||+|+.  +|++|.. ..+++++.|   |++  |+||++++  +.||+++++++++.++......
T Consensus       226 ~l~~l~~~~~~~li~DE~~~g--~g~~g~~~~~~~~~~~~---di~--s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~  298 (439)
T 3dxv_A          226 KFADICRAHGILVVCDEVKVG--LARSGRLHCFEHEGFVP---DIL--VLGKGLGGGLPLSAVIAPAEILDCASAFAMQT  298 (439)
T ss_dssp             HHHHHHHHTTCEEEEECTTTC--TTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSCCEEEEEEHHHHTSCSSSSCCT
T ss_pred             HHHHHHHHcCCEEEEeccccC--CCcCchhhHHHhcCCCC---CEE--EEcchhcCCcceEEEEECHHHHhhhcCCCcCC
Confidence            999999999999999999983  5666663 447788766   776  89999984  2388999999998876543343


Q ss_pred             eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       343 ~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                      +|   .+|+.++++.++++.+++ +++.++++++.+++++.|.++    +.+... .+.+.++++.+.........+...
T Consensus       299 t~---~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~  373 (439)
T 3dxv_A          299 LH---GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQSREPARAE  373 (439)
T ss_dssp             TT---TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECHHH
T ss_pred             Cc---ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCCHHH
Confidence            44   589999999999998876 458888999999988888764    223222 346778888774322111123344


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..++++.++++ ||++.+....       +..+||+++..+|++|+++++++|+++++++
T Consensus       374 ~~~~~~~l~~~-Gv~v~~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          374 TAKLIYRAYQL-GLVVYYVGMN-------GNVLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             HHHHHHHHHHH-TEECEEESTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHC-CcEEeecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            56788877765 9999876421       2459999999999999999999999998765

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=1.6e-38  Score=328.48  Aligned_cols=358  Identities=16%  Similarity=0.165  Sum_probs=268.5

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.+++ .||++||||+++   +.+|| +||+|.+|+.+++++...+++.   ..++.+...+++++|+++
T Consensus        31 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~  106 (459)
T 4a6r_A           31 AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGY-GRKDFAEAARRQMEELPFYNTF---FKTTHPAVVELSSLLAEV  106 (459)
T ss_dssp             ---CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCSCCCTT---SSSCCHHHHHHHHHHHHH
T ss_pred             cCCeeEEEeecCEEEECCCCEEEECCCchhcccCCC-CCHHHHHHHHHHHHhccccccc---cccCCHHHHHHHHHHHHh
Confidence            357889999999999 799999999997   88999 7999999999999986543222   334668899999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhhhhcc---------CCcEEEEcCCchhHHHhHhhhcCC------------eEEEec--
Q 011567          167 LG--TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFK--  221 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~~~~~---------~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~--  221 (483)
                      ++  .++++++++|++|+..+++++..         +..+|+.+..||+....+..+++.            .+..++  
T Consensus       107 ~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  186 (459)
T 4a6r_A          107 TPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQP  186 (459)
T ss_dssp             SCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCC
T ss_pred             CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCC
Confidence            85  45677779999999999988763         456778899999877666655442            222222  


Q ss_pred             ----CC---C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          222 ----HN---D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       222 ----~~---d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                          ++   |        +++||+.+++...+      ++++|++||+++++|.+.|    |++|+++|++||++||+||
T Consensus       187 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DE  260 (459)
T 4a6r_A          187 WWYKHGKDMTPDEFGVVAARWLEEKILEIGAD------KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADE  260 (459)
T ss_dssp             CHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccccCCcccCHHHHHHHHHHHHHHHHHHcCCC------CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence                13   2        67788887654322      4799999999999999887    9999999999999999999


Q ss_pred             ccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHh---cCCceeecCCCcHHHHHH
Q 011567          283 SNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRL---SSSGYVFSASLPPYLASA  355 (483)
Q Consensus       283 a~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~---~~~~~~fs~~~~p~~~aa  355 (483)
                      +|++  +|++|. +..+++++.|   |++  ||||++++.|   |++++++++++.+..   ..++.+|  +.||+++++
T Consensus       261 v~~g--~gr~G~~~~~~~~~~~p---di~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~--~~~~~~~aa  331 (459)
T 4a6r_A          261 VICG--FGRTGEWFGHQHFGFQP---DLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTY--SGHPVCAAV  331 (459)
T ss_dssp             TTTT--TTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHH--CSCHHHHHH
T ss_pred             cccC--CCcccccchHhhcCCCC---Cee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCC--CCCHHHHHH
Confidence            9984  455564 3457888877   777  7899997544   889999999998863   2223344  458999999


Q ss_pred             HHHHHHHHhcCcHHHHHHH-HHHHHHHHhh-ccCC---CceeecCCCCCEEEEEecCCCCC---chhhHHHHHHHHHHHH
Q 011567          356 AITAIDVLEENPDLITKLK-KNTAILRTGL-SDIH---GLSIASNPESPIVFLILEKSTGS---MKNDLQLLEDIADWAL  427 (483)
Q Consensus       356 a~~al~~l~~~~~~~~~l~-~~~~~l~~~L-~~~~---~~~i~~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~~l  427 (483)
                      +.++|+.++++ ++.++++ ++.+++++.| +.+.   .+... .+.+.++.+.+......   ...+.....++++.++
T Consensus       332 a~aal~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  409 (459)
T 4a6r_A          332 AHANVAALRDE-GIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF  409 (459)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCccccccccchHHHHHHHHHHHH
Confidence            99999988764 4788888 8888888877 4443   23222 34677888877532211   0112234567777766


Q ss_pred             HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      + +||++.+..          ..+||++++.+|++|+++++++|+++++++..
T Consensus       410 ~-~Gv~v~~~g----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          410 R-NNLIMRACG----------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             H-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-CCeEEecCC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6 599998753          23999999999999999999999999987653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=4.7e-39  Score=331.55  Aligned_cols=358  Identities=17%  Similarity=0.140  Sum_probs=257.8

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|+++++++|.++| .||++||||+++   +++|| +||+|.+|+.+++++.+..+    ...++.+...+++++|+++
T Consensus        25 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~   99 (448)
T 3dod_A           25 ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGH-RKKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDI   99 (448)
T ss_dssp             HSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCB-SCHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHH
T ss_pred             CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHh
Confidence            357889999999999 799999999995   78999 69999999999998853321    1334568889999999999


Q ss_pred             hC--CCCEEEecccHHHHHhhhhhhcc---------CCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC
Q 011567          167 LG--TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN  223 (483)
Q Consensus       167 ~g--~e~~i~~~sG~~a~~~ai~~~~~---------~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~  223 (483)
                      ++  .+++++++||++|+..|++++..         +.++|+.+..||+....++.+++..            +..++.+
T Consensus       100 ~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (448)
T 3dod_A          100 SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP  179 (448)
T ss_dssp             SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC
T ss_pred             CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC
Confidence            95  45777789999999999988743         4557777888898877666655422            2223332


Q ss_pred             ----------------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc-CCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          224 ----------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY-QNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       224 ----------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~-~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                                      |+++||+.+++...       ++++|++||++ +++|.+.|    |++|+++|++||++||+||
T Consensus       180 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-------~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE  252 (448)
T 3dod_A          180 YVYRSESGDPDECRDQCLRELAQLLEEHHE-------EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE  252 (448)
T ss_dssp             CCTTSSSCCHHHHHHHHHHHHHHHHHHHGG-------GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccccCCccchhhhhHHHHHHHHHHHHhCCC-------CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEec
Confidence                            37889988874322       37899999999 99998877    9999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHh-------cCCceeecCCCcHH
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL-------SSSGYVFSASLPPY  351 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~-------~~~~~~fs~~~~p~  351 (483)
                      +|++  +|++|.++ .+++++.|   |++  |+||++++   +.|++++++++++.++.       ..++  ++.+.||+
T Consensus       253 v~~g--~g~~g~~~a~~~~~~~~---di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~  323 (448)
T 3dod_A          253 VATG--FGRTGKMFACEHENVQP---DLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG--HSYTGNQL  323 (448)
T ss_dssp             TTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCC--CTTTTCHH
T ss_pred             cccC--CCcccchhhhhhcCCCC---CEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCccccc--CCCCcCHH
Confidence            9984  45556543 57888877   776  78999973   23678999999998765       2222  23356899


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCcee--ecCCCCCEEEEEecCCCCCch---hhHHHHHHHHHHH
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI--ASNPESPIVFLILEKSTGSMK---NDLQLLEDIADWA  426 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i--~~~~~~~i~~l~l~~~~~~~~---~~~~~~~~i~~~~  426 (483)
                      .++++.++|+.+++. ++.++++++.+++++.|.++..++.  ...+.+.++++.+........   .......++++.+
T Consensus       324 ~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  402 (448)
T 3dod_A          324 GCAVALENLALFESE-NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKM  402 (448)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHH
Confidence            999999999988764 4788889998888888866433321  113357788888754321100   0111134677776


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ++ +||++.+..          ..||++++..+|++||++++++|+++++++...
T Consensus       403 ~~-~Gv~~~~~~----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  446 (448)
T 3dod_A          403 RE-LGMLTRPLG----------DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL  446 (448)
T ss_dssp             HH-TTEECCEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HH-CCcEEeccC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            65 599997652          339999999999999999999999999987653

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=9.1e-38  Score=322.18  Aligned_cols=363  Identities=19%  Similarity=0.265  Sum_probs=270.8

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   +++|| +||+|.+|+.+++++... .+.   ..+..+...+|+++|+++
T Consensus        45 ~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~-~~~---~~~~~~~~~~la~~l~~~  119 (453)
T 4ffc_A           45 TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGA-SHPAVAAAIADQATHFTH-TCF---MVTPYEQYVQVAELLNAL  119 (453)
T ss_dssp             SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSC-CTT---TTSCCHHHHHHHHHHHHH
T ss_pred             CCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhccc-ccc---CcCCCHHHHHHHHHHHHh
Confidence            457889999999999 799999999996   78999 799999999999998532 111   234568889999999999


Q ss_pred             hC---CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCC----
Q 011567          167 LG---TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN----  223 (483)
Q Consensus       167 ~g---~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~----  223 (483)
                      ++   .+++++++||++|+..|++..   +++.++|+.+..||+.+..++.+++.             .+..++.+    
T Consensus       120 ~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (453)
T 4ffc_A          120 TPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLR  199 (453)
T ss_dssp             SSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTT
T ss_pred             CCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence            97   346777799999999998765   46778888999999888777666543             34444443    


Q ss_pred             C------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          224 D------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       224 d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                      |      .+.++..++......  .+.++++|++||+++++|.+.|    |++|+++|++||++||+||+|+.  +|++|
T Consensus       200 ~~~g~~~~~~~~~~~~~l~~~i--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~g~~g  275 (453)
T 4ffc_A          200 DEPGLTGEEAARRAISRIETQI--GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTG--FARTG  275 (453)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTS
T ss_pred             CccccchHHHHHHHHHHHHHhc--CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccC--CCccc
Confidence            3      344444333322110  1125899999999999999887    99999999999999999999974  45555


Q ss_pred             Ccc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHH
Q 011567          294 RGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI  370 (483)
Q Consensus       294 ~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~  370 (483)
                      .+. .+++++.|   |++  ||+|+++.  +.|++++++++++.+....++.+|+  .||+.++++.++++.+++. ++.
T Consensus       276 ~~~a~~~~~~~p---di~--t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~~-~~~  347 (453)
T 4ffc_A          276 AWFASEHEGIVP---DIV--TMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYG--GNPVTCAAAVAALGVMREL-DLP  347 (453)
T ss_dssp             SSSTHHHHTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS--SCHHHHHHHHHHHHHHHHT-THH
T ss_pred             ccchhhhcCCCc---chH--hhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCC--cCHHHHHHHHHHHHHhhhh-hHH
Confidence            543 57888876   776  78999974  2388899999998876554444444  5899999999999988664 478


Q ss_pred             HHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567          371 TKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR  446 (483)
Q Consensus       371 ~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~  446 (483)
                      ++++++.+++++.|.++    +.+... .+.+.++++.+... .....+.....++++.+++ +||++.+....      
T Consensus       348 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------  418 (453)
T 4ffc_A          348 ARARAIEASVTSRLSALAEEVDIIGEV-RGRGAMLAIEIVKP-GTLEPDAALTKSIAAEALS-QGVLILTCGTF------  418 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSEEEE-EEETTEEEEEEBCT-TSCCBCHHHHHHHHHHHHH-TTEECCEECTT------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeceEEEEEEecC-cccCCCHHHHHHHHHHHHh-CCCEEecCCCC------
Confidence            88888888888888653    333222 34577888887541 1111233456677887665 59999875321      


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                       ...+|++++..+|++|+++++++|+++++++.+
T Consensus       419 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (453)
T 4ffc_A          419 -GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS  451 (453)
T ss_dssp             -SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             234999999999999999999999999988754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=1.8e-37  Score=319.93  Aligned_cols=357  Identities=17%  Similarity=0.261  Sum_probs=267.0

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   +.+|| +||++.+|+.+++++... .+.   ..+..+...+|+++|+++
T Consensus        42 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~-~~~---~~~~~~~~~~la~~l~~~  116 (451)
T 3oks_A           42 TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTH-TCF---MVTPYEGYVAVCEQLNRL  116 (451)
T ss_dssp             SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSC-CTT---TTSCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEeecCEEEECCCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhccc-ccC---CccCCHHHHHHHHHHHHh
Confidence            457889999999999 799999999996   78999 799999999999987532 111   234567889999999999


Q ss_pred             hC---CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCC----
Q 011567          167 LG---TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN----  223 (483)
Q Consensus       167 ~g---~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~----  223 (483)
                      ++   .+++++++||++|+..|++..   +++..+|..+..||+.+..++.+++.             .+..++.+    
T Consensus       117 ~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (451)
T 3oks_A          117 TPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFR  196 (451)
T ss_dssp             SSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHH
T ss_pred             CCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence            96   346777799999999998765   46677888999999887776665442             34455544    


Q ss_pred             C-----------HHHHH---HHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccc
Q 011567          224 D-----------MDSLR---NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNS  285 (483)
Q Consensus       224 d-----------~~~Le---~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s  285 (483)
                      +           .++++   +.+++..     .+.++++|++||+++++|.+.|    |++|+++|++||++||+||+|+
T Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~l~~~~-----~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~  271 (451)
T 3oks_A          197 DAEFGKELATDGELAAKRAITVIDKQI-----GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT  271 (451)
T ss_dssp             HGGGCTTTTTCHHHHHHHHHHHHHHHT-----CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccccccccchhhHHHHHHHHHHHHhhc-----CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            1           12343   3333211     1125899999999999999887    9999999999999999999998


Q ss_pred             cccccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH
Q 011567          286 FGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV  362 (483)
Q Consensus       286 ~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~  362 (483)
                      .  +|++|.+. .+++++.|   |++  |++|+++.  +.|++++++++++.++...++.+|  +.||+.++++.++++.
T Consensus       272 g--~g~~g~~~~~~~~~~~p---di~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~aal~~  342 (451)
T 3oks_A          272 G--FARTGAMFACEHEGIDP---DLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTY--GGNPIACAAALATIET  342 (451)
T ss_dssp             T--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSS--SSCHHHHHHHHHHHHH
T ss_pred             C--CCccccchhhhhcCCCC---Cee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCCCC--CCCHHHHHHHHHHHHH
Confidence            4  45556543 57888876   777  89999974  237888999999887654444444  4589999999999998


Q ss_pred             HhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          363 LEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       363 l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      +++. ++.++++++.+++++.|.++    +.+... .+.+.++++.+... .....+.....++++.+++ +||++.+..
T Consensus       343 ~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~  418 (451)
T 3oks_A          343 IESE-GLVARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKA-GTTEPDADLTKALCAGAHA-AGVIVLSCG  418 (451)
T ss_dssp             HHHT-THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBST-TSCCBCHHHHHHHHHHHHH-TTEECEEEC
T ss_pred             Hhhh-hHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecC-ccCCCCHHHHHHHHHHHHh-CCcEEecCC
Confidence            8764 58888899998888888654    222222 34577888887541 1111233445677877665 599998753


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..       ...+|++++..+|++++++++++|++++++
T Consensus       419 ~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          419 TY-------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             TT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            21       134999999999999999999999998753

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.6e-37  Score=318.77  Aligned_cols=354  Identities=19%  Similarity=0.237  Sum_probs=267.6

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   +++|| +||++.+|+.+++++...       +++..+...+|+++|+++
T Consensus        36 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~la~~  107 (434)
T 3l44_A           36 GAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENGVL-------YGTPTALEVKFAKMLKEA  107 (434)
T ss_dssp             SCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcC-------CCCCCHHHHHHHHHHHHh
Confidence            457889999999999 799999999997   78999 899999999999988311       233457889999999999


Q ss_pred             hC-CCCEEEecccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcCC-------------------eEEEecCC
Q 011567          167 LG-TPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRS-------------------TVVYFKHN  223 (483)
Q Consensus       167 ~g-~e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~~-------------------~v~~~~~~  223 (483)
                      ++ .++++++++|++|+..+++++.   ++..+|+.+..+|+....++...+.                   .+..++++
T Consensus       108 ~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 3l44_A          108 MPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN  187 (434)
T ss_dssp             CTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT
T ss_pred             CCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc
Confidence            85 5566777999999999988764   4556777788888776555443332                   56778889


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-cc
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TE  298 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~  298 (483)
                      |+++|++.+++..+       ++++|++||+++++|.+.|    |++|+++|++||++||+||+|+..   ++|.+. .+
T Consensus       188 d~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~---~~g~~~~~~  257 (434)
T 3l44_A          188 NVETLKEALDKWGH-------EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF---RFMYGGAQD  257 (434)
T ss_dssp             CHHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT---TSSSSCHHH
T ss_pred             cHHHHHHHHHhCCC-------CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce---eccccHHHH
Confidence            99999999976543       3789999999999999988    999999999999999999999864   445443 57


Q ss_pred             ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee-cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567          299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKK  375 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f-s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~  375 (483)
                      ++++.|   |++  |+||++|+  +.|++++++++++.+......+.+ +.+.+|++++++.++++.+++ +++.+++++
T Consensus       258 ~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~  331 (434)
T 3l44_A          258 LLGVTP---DLT--ALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDE  331 (434)
T ss_dssp             HHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred             HcCCCC---Cee--ehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHH
Confidence            888876   776  79999972  237888999999887653222222 335689999999999998876 458899999


Q ss_pred             HHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567          376 NTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL  447 (483)
Q Consensus       376 ~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~-----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~  447 (483)
                      +.+++++.|+++   .++.....+.+.++.+.+.......     ..+.....++.+.+++ +||++.+...        
T Consensus       332 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~--------  402 (434)
T 3l44_A          332 LGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKY--------  402 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTT--------
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCC--------
Confidence            999999888764   1222222346778888875321110     0122334567777665 5999976532        


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                       +.+|+  +..+|++|+++++++|+++++++..
T Consensus       403 -~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~  432 (434)
T 3l44_A          403 -EAWFL--TTEHTKEDIEYTIEAVGRAFAALAD  432 (434)
T ss_dssp             -CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CcEEE--ecccCHHHHHHHHHHHHHHHHHHHh
Confidence             23676  5689999999999999999988754

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-37  Score=320.03  Aligned_cols=360  Identities=13%  Similarity=0.125  Sum_probs=268.1

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|+++++++|.+++ .||++||||+++   +++|| +||+|.+|+.+++++.+. + .   ..+..+...+++++|+++
T Consensus        30 ~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-~-~---~~~~~~~~~~la~~l~~~  103 (452)
T 3n5m_A           30 NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQTLSY-F-P---MSQSHEPAIKLAEKLNEW  103 (452)
T ss_dssp             GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHTTCCC-C-C---TTSEEHHHHHHHHHHHHH
T ss_pred             CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcCC-c-c---cccCCHHHHHHHHHHHHh
Confidence            457889999999999 799999999998   89999 799999999999988644 1 1   234568899999999999


Q ss_pred             hCCC-CEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe----
Q 011567          167 LGTP-DSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYF----  220 (483)
Q Consensus       167 ~g~e-~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~----  220 (483)
                      ++.+ +++++++|++|+..+++++.         ++.++|+.+..||+....++.+++..            +..+    
T Consensus       104 ~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (452)
T 3n5m_A          104 LGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPD  183 (452)
T ss_dssp             HTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCC
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCc
Confidence            9753 35666999999999998876         55567888889998776666554421            2222    


Q ss_pred             ----cCCC---------HHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          221 ----KHND---------MDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       221 ----~~~d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                          ++||         +++||+.+++...      .++++|++||+ ++ +|.+.|    |++|+++|++||++||+||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~------~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DE  256 (452)
T 3n5m_A          184 CYRMPGIERENIYDVECVKEVDRVMTWELS------ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDE  256 (452)
T ss_dssp             TTTSTTTTTSCGGGCHHHHHHHHHHHHHCG------GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCccCCchhhHHHHHHHHHHHHHHhcCC------CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEec
Confidence                2355         8899988873221      14789999999 78 998887    9999999999999999999


Q ss_pred             ccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHh--cCCc--eeecCCCcHHHH
Q 011567          283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRL--SSSG--YVFSASLPPYLA  353 (483)
Q Consensus       283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~--~~~~--~~fs~~~~p~~~  353 (483)
                      +|+.  +|++|.++ .+++++.|   |++  |+||++++ |    |++++++++++.++.  ....  +..+.+.||+++
T Consensus       257 v~~g--~g~~g~~~~~~~~~~~~---di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~  328 (452)
T 3n5m_A          257 VICG--FGRTGKAFGFMNYDVKP---DII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAAC  328 (452)
T ss_dssp             TTTT--TTTTSSSSGGGGTTCCC---SEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHH
T ss_pred             chhC--CCcccccchhhhcCCCC---CEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHH
Confidence            9984  45556543 57888876   777  79999975 5    889999999998853  1111  123335689999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCc-hhhHHHHHHHHHHHHH
Q 011567          354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSM-KNDLQLLEDIADWALK  428 (483)
Q Consensus       354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~-~~~~~~~~~i~~~~l~  428 (483)
                      +++.++++.+++. ++.++++++.+++++.|.++    +.+... .+.+.++.+.+....... ..+.....++++.+++
T Consensus       329 aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  406 (452)
T 3n5m_A          329 ALALKNLEIIENE-NLIERSAQMGSLLLEQLKEEIGEHPLVGDI-RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKE  406 (452)
T ss_dssp             HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH
Confidence            9999999988763 57889999999998888654    222222 345667777763221111 0112334567777665


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       +||++.+...+...   .+..|||+++..+|++|+++++++|++++++
T Consensus       407 -~Gv~~~~~~~~~~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          407 -KGLIIGRNGMTTAG---YNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             -TTEECEECTTSSTT---CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             -CCcEEeecCcccCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence             59999987643210   1245999999999999999999999988753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=1.3e-37  Score=319.33  Aligned_cols=353  Identities=20%  Similarity=0.254  Sum_probs=268.6

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||+++   +++|| .+|++.+++.+++++ +...      .+..+...+++++|++++
T Consensus        38 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~  109 (434)
T 2epj_A           38 YPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYV  109 (434)
T ss_dssp             SCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHH
T ss_pred             CCeeEEeeecCEEEECCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhC
Confidence            47889999999999 799999999987   78999 899999999999987 3321      124578899999999999


Q ss_pred             -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh-------------cC------CeEEEecCCC
Q 011567          168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND  224 (483)
Q Consensus       168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~-------------s~------~~v~~~~~~d  224 (483)
                       +.++++++++|++|+..++++   +++++++|+++..||+.....+..             .+      ..++.++++|
T Consensus       110 ~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d  189 (434)
T 2epj_A          110 KRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYND  189 (434)
T ss_dssp             CTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTC
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCC
Confidence             677788889999999999887   788888999998898754433221             12      2467788899


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                      +++|++.+++...       ++++|++||+++++|.+.|    +++|+++|++||++||+||+|++.+.|.  .+..+++
T Consensus       190 ~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~--~~~~~~~  260 (434)
T 2epj_A          190 VEALERVFAEYGD-------RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL--EGAQGYF  260 (434)
T ss_dssp             HHHHHHHHHHHGG-------GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST--THHHHHH
T ss_pred             HHHHHHHHHhCCC-------CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc--chhhHHh
Confidence            9999999976422       3789999999999999888    9999999999999999999999433331  2345677


Q ss_pred             CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec-CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS-ASLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs-~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      ++.|   |++  |++|++|+  ++|++++++++++.++.....+.++ .+.||+.++++.++++.+++ +++.++++++.
T Consensus       261 ~~~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~~~~~~~  334 (434)
T 2epj_A          261 NIEG---DII--VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYSVSREAA  334 (434)
T ss_dssp             TCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred             CCCC---Cee--eecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence            8766   776  89999985  5689999999988776532222222 25789999999999998876 45889999999


Q ss_pred             HHHHHhhccCC---CceeecCCCCCEEEEEecCCC-CCch----hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          378 AILRTGLSDIH---GLSIASNPESPIVFLILEKST-GSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       378 ~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~-~~~~----~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      +++++.|+++.   ++.....+.++++++.+.... ....    .+.....++.+.+++ +||++.+...          
T Consensus       335 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----------  403 (434)
T 2epj_A          335 KALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL----------  403 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT----------
T ss_pred             HHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC----------
Confidence            99999997641   332212346788898885310 0000    012234567777665 6999986532          


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                       .|+.++..+|++|+++++++|+++++++.
T Consensus       404 -~~~~~~~~~t~e~i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          404 -EAVFTGLPHQGEALEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             -SCEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             -CcEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence             24556778999999999999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=2e-37  Score=317.59  Aligned_cols=351  Identities=20%  Similarity=0.249  Sum_probs=263.1

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   +.+|| +||++.+|+.+++++...       +....+...+|+++|+++
T Consensus        34 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-------~~~~~~~~~~la~~l~~~  105 (429)
T 4e77_A           34 GIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLS-------FGAPTEMEVKMAQLVTDL  105 (429)
T ss_dssp             SCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcc-------cCCCCHHHHHHHHHHHhh
Confidence            357889999999999 799999999987   68999 799999999999987422       122457889999999999


Q ss_pred             hC-CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhh-------------------cCCeEEEecCC
Q 011567          167 LG-TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYL-------------------SRSTVVYFKHN  223 (483)
Q Consensus       167 ~g-~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~-------------------s~~~v~~~~~~  223 (483)
                      ++ .++++++++|++|+..+++   .+++++++|+++..+|+.+...+..                   ....+..++++
T Consensus       106 ~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (429)
T 4e77_A          106 VPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN  185 (429)
T ss_dssp             STTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT
T ss_pred             CCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC
Confidence            85 5567777999999999987   4567888999999999876532211                   11245678889


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-cccc
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTE  298 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~  298 (483)
                      |+++|++.+++...       ++++|++||+++++|.+.|    |++|+++|++||++||+||+|+..   ++|. +..+
T Consensus       186 d~~~le~~l~~~~~-------~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~---r~g~~~~~~  255 (429)
T 4e77_A          186 DLASVRQAFEQYPQ-------EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF---RVALAGAQD  255 (429)
T ss_dssp             CHHHHHHHHHHSTT-------TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT---TTBTTCHHH
T ss_pred             CHHHHHHHHHhcCC-------CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc---ccCcchHHH
Confidence            99999999976433       3789999999999999998    999999999999999999999853   3343 4457


Q ss_pred             ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567          299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKK  375 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~  375 (483)
                      ++++.|   |++  |+||++++  +.|++++++++++.++.....+.+++ +.||+.++++.++++.+++ +++.+++++
T Consensus       256 ~~~~~p---di~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~  329 (429)
T 4e77_A          256 YYHVIP---DLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTE  329 (429)
T ss_dssp             HTTCCC---SEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred             hcCCCC---Cee--eecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence            888876   776  89999973  45889999999988765432233322 5789999999999998865 458889999


Q ss_pred             HHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCc------hhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567          376 NTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSM------KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR  446 (483)
Q Consensus       376 ~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~------~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~  446 (483)
                      +.+++++.|.++   .++.....+.+.++++.+.......      ..+.....++++.+++ +||++.+...       
T Consensus       330 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~-------  401 (429)
T 4e77_A          330 LTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAF-------  401 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTT-------
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCC-------
Confidence            999999888663   1332222346778888886431100      0122344677877665 5999886532       


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          447 LPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                          -|++++..+|++|+++++++|++++++
T Consensus       402 ----~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          402 ----EAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             ----SCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ----CCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence                134557889999999999999988753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=4.3e-37  Score=315.11  Aligned_cols=373  Identities=17%  Similarity=0.220  Sum_probs=274.5

Q ss_pred             HHHHHHhhcCCCCCCcccccc--cccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567           68 EIDELCDEWVPESLIPPIIEE--MRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~--~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      +.-+...+..|..........  ....|.++++++|.++| .||++||||+++   ++||| +||++.+|+.+++++...
T Consensus         9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~   87 (429)
T 3k28_A            9 AAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS   87 (429)
T ss_dssp             HHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC
Confidence            344444455555433222111  13468889999999999 799999999997   78999 899999999999998432


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhh-CCCCEEEecccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcC---
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFL-GTPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSR---  214 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~-g~e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~---  214 (483)
                             ++++.+...+|+++|++++ +.++++++++|++|+..+++.+.   ++..+|+.+..+|+.+..++...+   
T Consensus        88 -------~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~  160 (429)
T 3k28_A           88 -------FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV  160 (429)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred             -------cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence                   2334678899999999998 45667777999999999987764   566678888999977655543332   


Q ss_pred             ----------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHc
Q 011567          215 ----------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKY  274 (483)
Q Consensus       215 ----------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~  274 (483)
                                      ..+..++++|+++|++.+++...       ++++|++||+++++|.+.|    |++|+++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  233 (429)
T 3k28_A          161 ATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD-------DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN  233 (429)
T ss_dssp             -----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC-------CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence                            14567788999999999976543       3789999999999999998    99999999999


Q ss_pred             CcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCcee-ecCCCcH
Q 011567          275 RFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPP  350 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p  350 (483)
                      |++||+||+|+..   ++|.+ ..+++++.|   |++  |+||++|+  +.|++++++++++.++.....+. .+.+.+|
T Consensus       234 ~~~li~DEv~~g~---~~g~~~~~~~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~  305 (429)
T 3k28_A          234 GALLIFDEVMTGF---RVAYNCGQGYYGVTP---DLT--CLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNP  305 (429)
T ss_dssp             TCEEEEECTTTTT---TSSTTHHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCH
T ss_pred             CCEEEEecccccc---ccCcchHHHHhCCCC---cee--hhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCCh
Confidence            9999999999753   44543 357788876   776  79999973  34889999999988754322222 2335689


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHH
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLED  421 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~-----~~~~~~~~~  421 (483)
                      ++++++.++++.++  +++.++++++.+++++.|+++    +.+... .+.+.++.+.+.......     ..+.....+
T Consensus       306 ~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (429)
T 3k28_A          306 LAMAAGYETLVQLT--PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAA  382 (429)
T ss_dssp             HHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCSHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCcccccccccccHHHHHH
Confidence            99999999998775  568899999999999988764    222111 345778888775322110     012234567


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +++.+++ +||++.+...         ..+|+  +..+|++|+++++++|+++++++
T Consensus       383 ~~~~l~~-~Gv~v~~~~~---------~~~r~--~~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          383 YYREMVE-QGVFLPPSQF---------EGLFL--STVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             HHHHHHH-TTEECCSSTT---------SCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-CCeEEecCCC---------CCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence            7777665 5999876422         22666  56899999999999999988653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=5.4e-37  Score=314.06  Aligned_cols=351  Identities=18%  Similarity=0.239  Sum_probs=267.0

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.++| .||++||||+++   +.+|| ++|++.+|+.+++++...       +....+...+++++|+++
T Consensus        33 ~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-------~~~~~~~~~~la~~l~~~  104 (427)
T 3fq8_A           33 GQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS-------FGAPCALENVLAEMVNDA  104 (427)
T ss_dssp             SCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEeeeCEEEECCCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCC-------cCCCCHHHHHHHHHHHHh
Confidence            457889999999999 799999999998   78999 899999999999987422       112467889999999999


Q ss_pred             hC-CCCEEEecccHHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhcC-------------------CeEEEecCC
Q 011567          167 LG-TPDSILYSYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSR-------------------STVVYFKHN  223 (483)
Q Consensus       167 ~g-~e~~i~~~sG~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~-------------------~~v~~~~~~  223 (483)
                      ++ .++++++++|++|+..++   +.+++++++|+.+..+|+.+.......+                   ..+..++++
T Consensus       105 ~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (427)
T 3fq8_A          105 VPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN  184 (427)
T ss_dssp             STTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC
Confidence            95 456667799999999998   5567888899999999976543332221                   236778899


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-cccc
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTE  298 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~  298 (483)
                      |+++|++.+++...       ++++|+++|+++++|.+.|    +++|+++|++||++||+||+|+..   ++|. +..+
T Consensus       185 d~~~le~~l~~~~~-------~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~---~~g~~~~~~  254 (427)
T 3fq8_A          185 DLEAVKALFAENPG-------EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF---RIAYGGVQE  254 (427)
T ss_dssp             CHHHHHHHHHHSTT-------TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT---TTBTTHHHH
T ss_pred             CHHHHHHHHHhCCC-------CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc---ccCcchhhH
Confidence            99999999976433       3899999999999999999    999999999999999999999843   3444 3457


Q ss_pred             ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCcee-ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567          299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPPYLASAAITAIDVLEENPDLITKLKK  375 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~  375 (483)
                      ++++.|   |++  |+||++++  +.|++++++++++.++.....+. .+.+.+|++++++.++++.+++ +++.+++++
T Consensus       255 ~~~~~~---di~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~  328 (427)
T 3fq8_A          255 KFGVTP---DLT--TLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQ  328 (427)
T ss_dssp             HTTCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred             hcCCCC---Chh--hhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence            788876   775  88999973  35889999999988764321111 1224689999999999998876 458899999


Q ss_pred             HHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567          376 NTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL  447 (483)
Q Consensus       376 ~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~  447 (483)
                      +.+++++.|.++.   ++.....+.+.++++.+......     ...+.....++++.+++ +||++.+...        
T Consensus       329 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~--------  399 (427)
T 3fq8_A          329 ITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF--------  399 (427)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT--------
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC--------
Confidence            9999998887631   22222234577888887542111     01122335567777665 5999976532        


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                         -|++++..+|++|+++++++|++++++
T Consensus       400 ---~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          400 ---EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             ---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence               267788899999999999999998865

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=6e-37  Score=310.38  Aligned_cols=342  Identities=18%  Similarity=0.218  Sum_probs=266.2

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++++++|.+++ .||++||||+++   +++|| ++|++.+++.+++++++.++.     .++.+.+.+++++++++
T Consensus        17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~   90 (395)
T 3nx3_A           17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKA   90 (395)
T ss_dssp             SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHH
T ss_pred             CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHh
Confidence            347788999999999 799999999998   88999 899999999999988654321     13467899999999999


Q ss_pred             hCCCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHH
Q 011567          167 LGTPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD  226 (483)
Q Consensus       167 ~g~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~  226 (483)
                      +|.++++++++|++|+..+++++.        ++.++|+.+..+|+....++.+++            ..+..++++|++
T Consensus        91 ~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  170 (395)
T 3nx3_A           91 SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDIS  170 (395)
T ss_dssp             HTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHH
T ss_pred             cCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHH
Confidence            998888888999999999988763        345677778888877665555443            467788899999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~  301 (483)
                      +|++.++.          .+++|+++++++++|.+.|    +++|+++|++||++||+||+|+.  +|++|... .++++
T Consensus       171 ~l~~~l~~----------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~--~g~~g~~~~~~~~~  238 (395)
T 3nx3_A          171 SVEKLVNE----------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG--MGRSGKFFAYEHAQ  238 (395)
T ss_dssp             HHHTTCCT----------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGT
T ss_pred             HHHHhccC----------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC--CCcCCcchhHHhcC
Confidence            99887742          3789999999999999988    99999999999999999999974  34555433 46777


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHH-HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARV-VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA  378 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~-~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~  378 (483)
                      +.+   |++  |+||+++.  +.|++++++++ ++.++....+.+|  +.+|+.++++.++++.+++. +..++++++.+
T Consensus       239 ~~~---d~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~aal~~~~~~-~~~~~~~~~~~  310 (395)
T 3nx3_A          239 ILP---DIM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTY--GGNPLVCAGVNAVFEIFKEE-KILENVNKLTP  310 (395)
T ss_dssp             CCC---SEE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCB--SCCHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             CCC---CEE--EecccccCCCceEEEEEchhhhhhhcCCcccCCCC--CCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            765   776  78999973  34889999998 8877654444444  45899999999999988653 47888888888


Q ss_pred             HHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          379 ILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       379 ~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      ++++.|.++    +.+... .+.++++++.+....        ...++++.+++ +||++.+..         +..+||+
T Consensus       311 ~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--------~~~~~~~~l~~-~Gi~v~~~~---------~~~iRi~  371 (395)
T 3nx3_A          311 YLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV--------KVAKVIQKCQE-NALLLISCG---------ENDLRFL  371 (395)
T ss_dssp             HHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS--------CHHHHHHHHHH-TTEECEEET---------TTEEEEC
T ss_pred             HHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc--------hHHHHHHHHHH-CCCEEecCC---------CCEEEEE
Confidence            888877653    323222 335778888885421        13356776554 599998753         2349999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++..+|++|+++++++|++++++
T Consensus       372 ~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          372 PPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998753

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=6.7e-37  Score=313.68  Aligned_cols=365  Identities=19%  Similarity=0.176  Sum_probs=254.9

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|+++++++|.+++ .+|++||||+++   +++|| ++|++++++.+++++.+..+.    ..+..+...+++++|+++
T Consensus        10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~   84 (430)
T 3i4j_A           10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGH-GRAEVGERMAAQAARLPFVHG----SQFSSDVLEEYAGRLARF   84 (430)
T ss_dssp             SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCT----TTCEEHHHHHHHHHHHHH
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhcccccc----cccCCHHHHHHHHHHHHh
Confidence            347789999999999 799999999996   89999 699999999999988543221    234567899999999999


Q ss_pred             hCC--CCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCC--------------eEEEec
Q 011567          167 LGT--PDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRS--------------TVVYFK  221 (483)
Q Consensus       167 ~g~--e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~--------------~v~~~~  221 (483)
                      ++.  ++++++++|++|+..+++++.         ++.++|+.+..+|+....+..+.+.              .+..++
T Consensus        85 ~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (430)
T 3i4j_A           85 VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLP  164 (430)
T ss_dssp             TTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEEC
T ss_pred             CCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcC
Confidence            963  567777999999999998874         3445777788888776555444432              333444


Q ss_pred             CC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC-CCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          222 HN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       222 ~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                      ++        |+++||+.+++...+      ++++|++||+++ ++|.+.+    |++|+++|++||++||+||+|+.  
T Consensus       165 ~~~~~~~~~~~~~~le~~l~~~~~~------~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~--  236 (430)
T 3i4j_A          165 KPDPARNGAEDAEGLRALLEREGPE------TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG--  236 (430)
T ss_dssp             CCCTTSCHHHHHTHHHHHHHHHCGG------GEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT--
T ss_pred             CCcccchhhHHHHHHHHHHHhcCCC------CEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC--
Confidence            44        448899888764321      478999999999 9998887    99999999999999999999984  


Q ss_pred             ccCCCCc-ccccc-CCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHhcCCce--eecCCCcHHHHHHHHHHH
Q 011567          289 LGRSGRG-LTEHC-GVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGY--VFSASLPPYLASAAITAI  360 (483)
Q Consensus       289 lg~~G~g-~~~~~-~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~~~~~~--~fs~~~~p~~~aaa~~al  360 (483)
                      +|++|.. ..+++ ++.|   |++  |+||++++ |    |++++++++++.++.....+  ..+.+.+|++++++.++|
T Consensus       237 ~~~~g~~~~~~~~~~~~~---di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal  310 (430)
T 3i4j_A          237 MGRCGSPLALSRWSGVTP---DIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL  310 (430)
T ss_dssp             TTTTSSSSGGGGTTTCCC---SEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHH
T ss_pred             CCcccchhhhhhhcCCCC---cEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHH
Confidence            3445543 35777 8766   776  68999984 5    78999999999887642211  122356899999999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhh-HHHHHHHHHHHHHhCCEEEE
Q 011567          361 DVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVV  435 (483)
Q Consensus       361 ~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~-~~~~~~i~~~~l~~~Gv~v~  435 (483)
                      +.+++ +++.++++++.+++++.|.++    +++... .+.+.++.+.+.+.......+ .....++++.+++ +||++.
T Consensus       311 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~  387 (430)
T 3i4j_A          311 DIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITY  387 (430)
T ss_dssp             HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC------------CHHHHHHHHHH-TTEECC
T ss_pred             HHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEE
Confidence            98876 347888888888888877653    344333 345778888875321100000 1123567777665 599998


Q ss_pred             eecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       436 ~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +..++..+..  +..+||++++.+|++++++++++|++++++++
T Consensus       388 ~~~~~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  429 (430)
T 3i4j_A          388 PGSGAEPNGR--GDHLLLGPPLSITAAEVDGLLALLAGALEDVL  429 (430)
T ss_dssp             -------------CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ecccccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            7633221110  23499999999999999999999999998764

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=5.2e-37  Score=313.58  Aligned_cols=345  Identities=18%  Similarity=0.180  Sum_probs=267.2

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .+|++||||+++   +++|+ .+|++.+++.++++++...+   +.  +..+...+++++|++++
T Consensus        39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~  112 (420)
T 2pb2_A           39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTS---NV--FTNEPALRLGRKLIDAT  112 (420)
T ss_dssp             CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCC---TT--SCCHHHHHHHHHHHHHS
T ss_pred             CCceEEeeecCEEEECCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhccccc---Cc--cCCHHHHHHHHHHHhhC
Confidence            46788999999999 799999999998   89999 89999999999998865432   11  24578899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhcc-------CC--cEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFCK-------KG--DLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD  226 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~~-------~g--diI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~  226 (483)
                      |.++++++++|++|+..+++++..       +|  ++|+.+..+|+.+..++.+.+.+            +..++++|++
T Consensus       113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~  192 (420)
T 2pb2_A          113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLH  192 (420)
T ss_dssp             SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHH
T ss_pred             CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHH
Confidence            988888889999999999988753       33  57777888998877766666543            6778888999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc----cChHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI----APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i----~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~  301 (483)
                      +|++.+++          ++++|+++++++++|.+    .++++|+++|++||++||+||+|++  +|++|+++ .++++
T Consensus       193 ~le~~i~~----------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g--~~~~g~~~~~~~~~  260 (420)
T 2pb2_A          193 AVKAVMDD----------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCG--MGRTGDLFAYMHYG  260 (420)
T ss_dssp             HHHHHCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHHHT
T ss_pred             HHHHHhcc----------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcC--cccCCcHHHHHhcC
Confidence            99887752          37899999998877753    3489999999999999999999963  56777665 36777


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.|   |++  |++|++++  +.|++++++++++.++....+.+|  +.||+.++++.++|+.+++ +++.++++++.++
T Consensus       261 ~~~---dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~--~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~  332 (420)
T 2pb2_A          261 VTP---DIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTY--GGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQ  332 (420)
T ss_dssp             CCC---SEE--EECGGGGTTSCCEEEEECHHHHTTCC----CCEE--CCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHH
T ss_pred             CCC---CeE--EecccccCCCceEEEEEhHHHHHhhcCCCcCccc--CcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            766   777  78999983  247888888888776543344455  4589999999999998876 5688999999999


Q ss_pred             HHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          380 LRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       380 l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      +++.|+++    +.+... .+.+.++++.+.....      ....++.+.+++ +||++.+..         +..+|+++
T Consensus       333 l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~------~~~~~l~~~l~~-~Gi~v~~~~---------~~~iRl~~  395 (420)
T 2pb2_A          333 FVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKYK------GRARDFLYAGAE-AGVMVLNAG---------ADVMRFAP  395 (420)
T ss_dssp             HHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGGT------TCHHHHHHHHHH-TTEECEESS---------TTEEEECC
T ss_pred             HHHHHHHHHhcCCCeEEE-EecceEEEEEECCCch------HHHHHHHHHHHH-CCCEEEeCC---------CCEEEEEC
Confidence            99999764    222212 2357888888753210      013457776665 699998752         23499999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +..+|++|+++++++|++++++++
T Consensus       396 ~~~~t~eei~~~~~~l~~~l~~~~  419 (420)
T 2pb2_A          396 SLVVEEADIHEGMQRFAQAVGKVV  419 (420)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=1.8e-36  Score=309.96  Aligned_cols=348  Identities=22%  Similarity=0.308  Sum_probs=263.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .||++||||+++   +++|| .+|++.+|+.+++++ +.+.      .+..+...++++.|++++
T Consensus        34 ~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~  105 (424)
T 2e7u_A           34 TPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLER-GLTF------GAPSPLEVALAKKVKRAY  105 (424)
T ss_dssp             CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHC
T ss_pred             CCeeEEeeecCEEEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhC
Confidence            37788999999999 799999999987   78999 899999999999987 3321      134578899999999999


Q ss_pred             -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh-------------cC------CeEEEecCCC
Q 011567          168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND  224 (483)
Q Consensus       168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~-------------s~------~~v~~~~~~d  224 (483)
                       +.++++++++|++|+..++++   +++++++|+.+..||+.....+..             .+      ..++.++++|
T Consensus       106 ~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d  185 (424)
T 2e7u_A          106 PFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYND  185 (424)
T ss_dssp             TTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTC
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCC
Confidence             566777889999999999885   888888999998999754433321             12      2467788899


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC  300 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~  300 (483)
                      +++|++.+++...       ++++|++||+++++|.+.|    +++|+++ ++||++||+||+|++.+.|.  .+..+++
T Consensus       186 ~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~--~~~~~~~  255 (424)
T 2e7u_A          186 PEGLREVLKRRGE-------EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF--GGATELL  255 (424)
T ss_dssp             HHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST--THHHHHH
T ss_pred             HHHHHHHHHhCCC-------CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch--hHHHHHh
Confidence            9999999875322       3789999999998998887    9999999 99999999999998433331  2345678


Q ss_pred             CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567          301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKKNT  377 (483)
Q Consensus       301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~  377 (483)
                      ++.|   |++  |++|++|+  ++|++++++++++.++.....+.+++ +.||+.++++.++++.+++.+++.+++++++
T Consensus       256 ~~~~---di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~  330 (424)
T 2e7u_A          256 GLKP---DLV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLG  330 (424)
T ss_dssp             TCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred             CCCc---chh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            8776   776  89999984  56889999999988765322222222 5689999999999998876456899999999


Q ss_pred             HHHHHhhccC---CCceeecCCCCCEEEEEecCCC-CCch----hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567          378 AILRTGLSDI---HGLSIASNPESPIVFLILEKST-GSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV  449 (483)
Q Consensus       378 ~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~-~~~~----~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~  449 (483)
                      +++++.|+++   .++.....+.++++++.+.... ....    .+.....++.+.++ ++||++.+...          
T Consensus       331 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~----------  399 (424)
T 2e7u_A          331 ARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF----------  399 (424)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS----------
T ss_pred             HHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC----------
Confidence            9999999764   1332111345778888885311 0000    01233556777766 56999986532          


Q ss_pred             ceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       450 ~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                       .|+.++..+|++|+++++++|+++
T Consensus       400 -~~~~~~~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          400 -EAAFLSVAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             -SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred             -CceEeeccCCHHHHHHHHHHHHHh
Confidence             235567889999999999999876

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=1.6e-37  Score=321.86  Aligned_cols=349  Identities=16%  Similarity=0.175  Sum_probs=253.2

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .+.++++++|.++| .||++||||+++   +.+|| +||+|.+|+.+++.+++.+.....+.....++..+++++|++++
T Consensus        45 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~  123 (472)
T 1ohv_A           45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA  123 (472)
T ss_dssp             CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGC
T ss_pred             CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCC-CCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhC
Confidence            35678999999999 899999999987   56899 89999999999876532211111011123456677777777777


Q ss_pred             --CCCCEEEecccHHHHHhhhhhhc---------------------------c--CCcEEEEcCCchhHHHhHhhhcCCe
Q 011567          168 --GTPDSILYSYGLSTMFSAIPCFC---------------------------K--KGDLIVADEGVHWGIQNGLYLSRST  216 (483)
Q Consensus       168 --g~e~~i~~~sG~~a~~~ai~~~~---------------------------~--~gdiI~~~~~~h~s~~~g~~~s~~~  216 (483)
                        +.+++++++||++|++.|+++..                           +  +.++|.++..||+.+..++.+++..
T Consensus       124 ~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~  203 (472)
T 1ohv_A          124 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK  203 (472)
T ss_dssp             CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred             CCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCc
Confidence              45678888999999999998762                           2  3568888999999888877776532


Q ss_pred             E-------------EEec-----------CC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---
Q 011567          217 V-------------VYFK-----------HN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---  263 (483)
Q Consensus       217 v-------------~~~~-----------~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---  263 (483)
                      .             ..++           +|      |+++|++.+++....    ..++++|++|++++++|.+.|   
T Consensus       204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~vive~v~~~~G~~~~~~~  279 (472)
T 1ohv_A          204 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK----KKTVAGIIVEPIQSEGGDNHASDD  279 (472)
T ss_dssp             HHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEEEEEECSSBCTTTCBCCCHH
T ss_pred             cccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCC----CCCEEEEEEcCCcCCCCCCCCCHH
Confidence            1             1221           22      567777777653220    013789999999999999887   


Q ss_pred             -hHHHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEcccccc-ccCCCceeeccHHHHHHHHhcCC
Q 011567          264 -LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHA-LATEGGFCTGSARVVDHQRLSSS  340 (483)
Q Consensus       264 -L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~-lg~~GG~i~~~~~~~~~~~~~~~  340 (483)
                       |++|+++|++||++||+||+|++  +|++|.+ ..+++|+. ..+|++  ||||+ +|  |||++ ++++. .+..   
T Consensus       280 ~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~gv~-~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~---  347 (472)
T 1ohv_A          280 FFRKLRDISRKHGCAFLVDEVQTG--GGSTGKFWAHEHWGLD-DPADVM--TFSKKMMT--GGFFH-KEEFR-PNAP---  347 (472)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSGGGGGCCS-SCCSEE--EECGGGSS--EEEEE-CGGGS-CSSS---
T ss_pred             HHHHHHHHHHHhCCEEEEeCcccC--CCCCCCchhccccCCC-CCCCEE--EEcccccc--CCccC-chhhc-cccc---
Confidence             99999999999999999999984  5666664 45777875 123886  89999 56  89987 65552 1111   


Q ss_pred             ceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CC-ceeecCCCCCEEEEEecCCCCCchh
Q 011567          341 GYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       341 ~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~-~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      ...+++ +.||+.++++.++|+.+++. ++.++++++++++++.|+++    ++ +... .+.+.++.+.+.+       
T Consensus       348 ~~~~~T~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~-------  418 (472)
T 1ohv_A          348 YRIFNTWLGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD-------  418 (472)
T ss_dssp             SSSCCSSSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS-------
T ss_pred             ccccCccCccHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC-------
Confidence            222222 46899999999999988764 48899999999999998764    22 2212 2357788877632       


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       .....+++..+++ +||++.+..         ...||++++..+|++||++++++|++++++
T Consensus       419 -~~~~~~~~~~l~~-~Gv~~~~~g---------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          419 -ESIRNKLISIARN-KGVMLGGCG---------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             -HHHHHHHHHHHHH-TTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -hhHHHHHHHHHHH-CCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence             1234567887775 599998742         134999999999999999999999998764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=9.3e-39  Score=348.74  Aligned_cols=360  Identities=14%  Similarity=0.087  Sum_probs=255.2

Q ss_pred             CCCccccCCCC--eEE-ECCe----eEEEeecC---CCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHH
Q 011567           92 EPPVLESAAGP--HTI-ISGK----EVVNFASA---NYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE  160 (483)
Q Consensus        92 ~~~~i~~~~g~--~~~-~~G~----~~id~~s~---~~lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~  160 (483)
                      .|.+|++++|.  |+| .||+    +|||++++   +.+|| + ||+|.+|+.+|+++++..+.    ...+++...+|+
T Consensus       356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh-~~~p~i~~Ai~~Q~~~l~h~~~----~~~~~~~~~~La  430 (831)
T 4a0g_A          356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDP-TFQAELAREMGYTAARFGHVMF----PENVYEPALKCA  430 (831)
T ss_dssp             GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCH-HHHHHHHHHHHHHHHHHSSCCC----TTEECHHHHHHH
T ss_pred             CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCC-CCCHHHHHHHHHHHhhcccccc----cccCCHHHHHHH
Confidence            46789999896  777 6898    99999996   88999 7 99999999999999865321    123568899999


Q ss_pred             HHHHhhhC---CCCEEEecccHHHHHhhhhhh----c--------------cCCcEEEEcCCchhHHHhHhhhcCCeE--
Q 011567          161 ARIAKFLG---TPDSILYSYGLSTMFSAIPCF----C--------------KKGDLIVADEGVHWGIQNGLYLSRSTV--  217 (483)
Q Consensus       161 ~~La~~~g---~e~~i~~~sG~~a~~~ai~~~----~--------------~~gdiI~~~~~~h~s~~~g~~~s~~~v--  217 (483)
                      ++|+++++   .+.+++++||++||+.|++..    +              +|.++|..+..||+.+..++.+++...  
T Consensus       431 e~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~  510 (831)
T 4a0g_A          431 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYT  510 (831)
T ss_dssp             HHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGG
T ss_pred             HHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccc
Confidence            99999998   457788899999999998764    1              355789999999999998888765310  


Q ss_pred             ----------------------------EEec------------CCCH------------------HHHHHHHHHhhhhh
Q 011567          218 ----------------------------VYFK------------HNDM------------------DSLRNTLERVTADN  239 (483)
Q Consensus       218 ----------------------------~~~~------------~~d~------------------~~Le~~l~~~~~~~  239 (483)
                                                  +.++            ++|.                  ++||+.|++...  
T Consensus       511 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--  588 (831)
T 4a0g_A          511 GFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSG--  588 (831)
T ss_dssp             STTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC-------
T ss_pred             cccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhh--
Confidence                                        0111            2332                  345555543110  


Q ss_pred             hhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEcc
Q 011567          240 KRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAA  313 (483)
Q Consensus       240 ~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s  313 (483)
                      ...+.++++|++||+ ++.+|.+.|    |++|+++|++||++||+||++++  +|++|+++ ++++|+.|   ||+  |
T Consensus       589 ~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tG--fGRtG~~fa~e~~gv~P---Dii--t  661 (831)
T 4a0g_A          589 VRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTG--FWRLGVETTTELLGCKP---DIA--C  661 (831)
T ss_dssp             ----CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTT--TTTTSBSSTHHHHSSCC---SEE--E
T ss_pred             hcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccc--cccCCCchhhHhcCCCC---cEE--E
Confidence            001235899999997 788887775    99999999999999999999974  56666654 58999988   887  7


Q ss_pred             ccccccCC---CceeeccHHHHHHHHhcC----CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------
Q 011567          314 MGHALATE---GGFCTGSARVVDHQRLSS----SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI-------  379 (483)
Q Consensus       314 ~~K~lg~~---GG~i~~~~~~~~~~~~~~----~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~-------  379 (483)
                      ++|++++.   -|++++++++++.+....    ..+.++.+.||++|++++++|+++++++ +.++++++.++       
T Consensus       662 lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~-l~~~~~~~~~~l~~~l~~  740 (831)
T 4a0g_A          662 FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE-TNHNITSQGKTLRELWDE  740 (831)
T ss_dssp             ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT-TCTTBCTTSSBBCCCSCH
T ss_pred             EecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence            99999741   166889999999876432    1123344569999999999999997643 44444433332       


Q ss_pred             -HHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC
Q 011567          380 -LRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA  458 (483)
Q Consensus       380 -l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~  458 (483)
                       +.+.+.+.+.+.-. .+.+.++.+.+..+......+.....+++..+++ +||++.+..          ..||+++++.
T Consensus       741 ~l~~~l~~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g----------~~lrl~pp~~  808 (831)
T 4a0g_A          741 ELVQQISSHSAVQRV-VVIGTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLG----------NVIYLMCGPC  808 (831)
T ss_dssp             HHHHHHHHSTTEEEE-EEETTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCBT----------TEEEEECCTT
T ss_pred             HHHHHHhhCCCceeE-eecccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEecC----------CEEEEECCCC
Confidence             33344444443322 2467888888754211111122345677877665 599997642          3499999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 011567          459 HSEADLVKACESLKRISAVV  478 (483)
Q Consensus       459 ~t~edi~~~~~~l~~~~~~~  478 (483)
                      +|++||++++++|+++++++
T Consensus       809 ~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          809 TSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             CCHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987653

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=1.7e-40  Score=340.65  Aligned_cols=347  Identities=17%  Similarity=0.183  Sum_probs=267.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| +|||+||||+++.   .+|| +||+|.+|+.+++++ +.+      +.+..+...+|+++|++++
T Consensus        82 ~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~~-~~~------~~~~~~~~~~Lae~L~~~~  153 (465)
T 2yky_A           82 FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALAV-GLN------LSTQTENEALFAEAVCDRF  153 (465)
Confidence            47889999999999 8999999999984   4899 899999999999988 332      1234578899999999999


Q ss_pred             -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhh---hcCC--eEEEecCCCHHHHHHHHHHhhhh
Q 011567          168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLY---LSRS--TVVYFKHNDMDSLRNTLERVTAD  238 (483)
Q Consensus       168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~---~s~~--~v~~~~~~d~~~Le~~l~~~~~~  238 (483)
                       +.+.+++++||++|+++|++.   ++++.++|.++..||+.....+.   ..+.  .+..+++||+++|++.+++... 
T Consensus       154 p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~-  232 (465)
T 2yky_A          154 PSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGH-  232 (465)
Confidence             677888889999999999876   46788899999999987765551   1122  4567788999999999875322 


Q ss_pred             hhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc
Q 011567          239 NKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM  314 (483)
Q Consensus       239 ~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~  314 (483)
                            ++++|++||+++++|.+.|    +++|+++|++||++||+||+|+ ++.|.  .+..+++|+.|   |++  ||
T Consensus       233 ------~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~--~~a~~~~gv~p---Di~--t~  298 (465)
T 2yky_A          233 ------DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG--GGAQEMLGISA---DLT--TL  298 (465)
Confidence                  3789999999999998877    9999999999999999999999 66553  34567888876   776  89


Q ss_pred             cccccC--CCceeeccHHHHHHHHhc--C---CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC
Q 011567          315 GHALAT--EGGFCTGSARVVDHQRLS--S---SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       315 ~K~lg~--~GG~i~~~~~~~~~~~~~--~---~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~  387 (483)
                      +|++|+  +.|++++++++++.+...  +   .+.+|  +.||+++++++++|+.++++ ++.+++++++++++++|+++
T Consensus       299 sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~--~~npla~aAa~aaL~~l~~~-~~~~~~~~~~~~l~~~L~~~  375 (465)
T 2yky_A          299 GKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTF--NNNILTMSAGHAALTQIYTR-QAASDLSASGDRFRANLNRI  375 (465)
Confidence            999984  237889999999988651  1   22333  56899999999999998764 58999999999999999875


Q ss_pred             C-Ccee--ecCCCCCEEEEEecCCC-----CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          388 H-GLSI--ASNPESPIVFLILEKST-----GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       388 ~-~~~i--~~~~~~~i~~l~l~~~~-----~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      . .+.+  ...+.+.++++.+.+..     .....+.....+++..+++ +||++.+..+.          .   ++..+
T Consensus       376 ~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~----------~---~s~~~  441 (465)
T 2yky_A          376 AVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMY----------A---LSLEI  441 (465)
Confidence            2 2222  22346778888775310     0000122335577887775 59999876431          1   66779


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRISAVV  478 (483)
Q Consensus       460 t~edi~~~~~~l~~~~~~~  478 (483)
                      |++||++++++++++++++
T Consensus       442 t~edid~~l~~l~~~l~~~  460 (465)
T 2yky_A          442 ADAGRDAFAEALADFIGEQ  460 (465)
Confidence            9999999999999988765

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=6.1e-36  Score=302.58  Aligned_cols=337  Identities=19%  Similarity=0.210  Sum_probs=261.5

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.+++ .+|++||||+++   ..+|| .+|++.+++.+++++++.++.     .+..+...+++++|++++
T Consensus        18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~   91 (392)
T 3ruy_A           18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSR-----AFHSDQLGPWYEKVAKLT   91 (392)
T ss_dssp             CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCT-----TSEETTHHHHHHHHHHHH
T ss_pred             CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhc
Confidence            46778999999999 899999999987   45888 799999999999988654321     134567899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhccC----------CcEEEEc-CCchhHHHhHhhhcCC------------eEEEecCCC
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFCKK----------GDLIVAD-EGVHWGIQNGLYLSRS------------TVVYFKHND  224 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~~~----------gdiI~~~-~~~h~s~~~g~~~s~~------------~v~~~~~~d  224 (483)
                      |.++++++++|++|+..+++++..+          +|.|++. ..+|+.......+.+.            .+..++++|
T Consensus        92 g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  171 (392)
T 3ruy_A           92 NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD  171 (392)
T ss_dssp             TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred             CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence            9888888899999999999876543          5566654 4555555444444322            467788899


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccc
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEH  299 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~  299 (483)
                      +++|++.++.          ++++|+++++++++|.+.|    +++|+++|++||+++|+||+|+.  +|++|.++ .++
T Consensus       172 ~~~l~~~l~~----------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~  239 (392)
T 3ruy_A          172 LEALKAAITP----------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG--LGRTGKVFACDW  239 (392)
T ss_dssp             HHHHHHHCCT----------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT--TTTTSSSSGGGG
T ss_pred             HHHHHHHhcc----------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC--CCccccchhhhc
Confidence            9999988752          3789999999999999998    99999999999999999999963  45555544 356


Q ss_pred             cCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN  376 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~  376 (483)
                      +++.+   |++  |+||++++   .+|++++++++++.++....+..|  +.+++.++++.++++.++. +++.++++++
T Consensus       240 ~~~~~---d~~--~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~  311 (392)
T 3ruy_A          240 DNVTP---DMY--ILGKALGGGVFPISCAAANRDILGVFEPGSHGSTF--GGNPLACAVSIAALEVLEE-EKLTERSLQL  311 (392)
T ss_dssp             GTCCC---SEE--EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSS--TTCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred             cCCCC---CEE--EEchhhhCChhhhEEEEECHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence            67655   776  78899975   368999999998877655444444  4589999999999998876 4689999999


Q ss_pred             HHHHHHhhccCC--CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          377 TAILRTGLSDIH--GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       377 ~~~l~~~L~~~~--~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      .+++++.|+++.  .+... .+.+.++.+.++.          ...++.+.++ ++||.+.+..         +..+|++
T Consensus       312 ~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~----------~~~~l~~~l~-~~gi~v~~~~---------~~~iRi~  370 (392)
T 3ruy_A          312 GEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE----------PARPYCEQLK-AAGLLCKETH---------ENVIRIA  370 (392)
T ss_dssp             HHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS----------CSHHHHHHHH-TTTEECCCBT---------TTEEEEC
T ss_pred             HHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc----------hHHHHHHHHH-HCCcEEecCC---------CCEEEEE
Confidence            999999998862  23322 2357788887743          1225666655 5699998653         2449999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ++..+|++|+++++++|++++
T Consensus       371 ~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          371 PPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=3.8e-35  Score=299.96  Aligned_cols=356  Identities=20%  Similarity=0.225  Sum_probs=264.8

Q ss_pred             CCccccCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-
Q 011567           93 PPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-  167 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~G~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-  167 (483)
                      |.++++++|.++| .+|++||||+++.   ++|+ .+|++.+++.+++++++.++.    .|+..+...+|++.|++++ 
T Consensus        24 ~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~   98 (426)
T 1sff_A           24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCF----QVLAYEPYLELCEIMNQKVP   98 (426)
T ss_dssp             EEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCT----TTEECHHHHHHHHHHHHHSS
T ss_pred             CceEEecccCEEEeCCCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccc----cccCCHHHHHHHHHHHHhCC
Confidence            6678999999999 7999999999873   8999 899999999999987654321    3455678899999999999 


Q ss_pred             C-C-CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecC-----C-
Q 011567          168 G-T-PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKH-----N-  223 (483)
Q Consensus       168 g-~-e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~-----~-  223 (483)
                      | . ++.+++++|++|+..+++   ++++++++|+.+..+|+.+..++.+.+.+             +..++.     + 
T Consensus        99 ~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~  178 (426)
T 1sff_A           99 GDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI  178 (426)
T ss_dssp             CSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTB
T ss_pred             cccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCcccccc
Confidence            5 4 456666889999999988   78888888888888998877777665542             444443     2 


Q ss_pred             ----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567          224 ----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       224 ----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g  295 (483)
                          |+++|++.+++...     +.++++|+++|+++|+|.+.+    +++|+++|++||++||+||+|+.  ++++|.+
T Consensus       179 ~~~~d~~~l~~~l~~~~~-----~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~  251 (426)
T 1sff_A          179 SEDDAIASIHRIFKNDAA-----PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG--AGRTGTL  251 (426)
T ss_dssp             CHHHHHHHHHHHHHHTCC-----GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSS
T ss_pred             chHHHHHHHHHHHHhccC-----CCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhc--cCcccch
Confidence                67778877764210     013789999999888997777    99999999999999999999993  5555654


Q ss_pred             c-ccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHH
Q 011567          296 L-TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLIT  371 (483)
Q Consensus       296 ~-~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~  371 (483)
                      . .+++++.+   |++  |+||++|+ |   ||+++++++++.++...  ..++.+.+++.++++.++++.+++. +..+
T Consensus       252 ~~~~~~~~~~---di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~aal~~~~~~-~~~~  322 (426)
T 1sff_A          252 FAMEQMGVAP---DLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFEQE-NLLQ  322 (426)
T ss_dssp             SGGGGTTSCC---SEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTS--BCCSSSSCHHHHHHHHHHHHHHHHT-THHH
T ss_pred             hhhhhcCCCC---CEE--EEcccccC-CCceEEEEEcHHHHhhhccCC--cCcCCCCCHHHHHHHHHHHHHHHhc-CHHH
Confidence            4 35566544   776  89999997 7   99999999888765322  2233356899999999999988764 4788


Q ss_pred             HHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567          372 KLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL  447 (483)
Q Consensus       372 ~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~  447 (483)
                      +++++.+++++.|+++    +.+... .+.++++++.+.........+.....++++.+++ +||.+.+....       
T Consensus       323 ~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~-------  393 (426)
T 1sff_A          323 KANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY-------  393 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT-------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC-------
Confidence            8999999999888763    222222 2347888888843110000012234567777665 59999876531       


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +..+|++++..+|++|+++++++|+++++++
T Consensus       394 ~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          394 YNVLRILVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            2459999999999999999999999998765

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=3.7e-35  Score=302.37  Aligned_cols=364  Identities=15%  Similarity=0.130  Sum_probs=264.6

Q ss_pred             CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE--ECCeeEEEeecC---CCCCCCCChHHH-H-HHHH-
Q 011567           63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI--ISGKEVVNFASA---NYLGLIGHEKLL-E-SCTS-  134 (483)
Q Consensus        63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~G~~~id~~s~---~~lG~~~~p~i~-~-a~~~-  134 (483)
                      +++.+++.+...++..   .+.     ++.+..+++++|.++|  .||++||||+++   +.+|| .||++. + |+.+ 
T Consensus        14 ~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~   84 (449)
T 2cjg_A           14 PTTPDRVHEVLGRSML---VDG-----LDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGM-NPPALVDDREFHAE   84 (449)
T ss_dssp             -CCGGGHHHHHHTTSC---CCS-----CSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHH
T ss_pred             CCCHHHHHHHHHHhhc---ccC-----CCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCC-CCHHHHHHHHHHHH
Confidence            7788887766655431   111     1112334699999998  589999999876   67899 699999 9 9999 


Q ss_pred             --HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEecccHHHHHhhhhhh---cc------------CCc
Q 011567          135 --ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSAIPCF---CK------------KGD  194 (483)
Q Consensus       135 --~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG~~a~~~ai~~~---~~------------~gd  194 (483)
                        ++++...  .+++   +..+...+++++|+++++   .++++++++|++|+..++++.   ++            +.+
T Consensus        85 ~~~~~~~~~--~~~~---~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~  159 (449)
T 2cjg_A           85 LMQAALNKP--SNSD---VYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQ  159 (449)
T ss_dssp             HHHHHTCCC--CTTT---CCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCE
T ss_pred             HHHHHhcCC--CCcc---cCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCE
Confidence              8877532  1121   245778999999999985   456677799999999998743   33            345


Q ss_pred             EEEEcCCchhHHHhHhhhcCC-------------eEEEecCCC--HHH-------------HHHHHHHhhhhhhhccCcc
Q 011567          195 LIVADEGVHWGIQNGLYLSRS-------------TVVYFKHND--MDS-------------LRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       195 iI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~d--~~~-------------Le~~l~~~~~~~~~~~~~~  246 (483)
                      +|+.+..+|+.+..++.+++.             .+..++++|  .+.             |++.+++...       ++
T Consensus       160 Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~-------~~  232 (449)
T 2cjg_A          160 VLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPH-------DI  232 (449)
T ss_dssp             EEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTT-------TE
T ss_pred             EEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCC-------ce
Confidence            677777899877665555543             566777777  433             6666654222       47


Q ss_pred             EEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCC
Q 011567          247 RYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATE  321 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~  321 (483)
                      ++|++||+++++|.+.+    |++|+++|++||++||+||+|++  +|++|.+. .+++++.|   |++  |+||++  +
T Consensus       233 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~~~~~---di~--t~sK~l--~  303 (449)
T 2cjg_A          233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTG--CGLTGTAWAYQQLDVAP---DIV--AFGKKT--Q  303 (449)
T ss_dssp             EEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSTHHHHTCCC---SEE--EECGGG--S
T ss_pred             EEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccC--CCccCcceeecccCCCc---eEE--EecCcc--c
Confidence            89999999999998777    99999999999999999999984  45566543 46778766   776  789999  4


Q ss_pred             CceeeccHHHHHHHH-----hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CC-ce
Q 011567          322 GGFCTGSARVVDHQR-----LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LS  391 (483)
Q Consensus       322 GG~i~~~~~~~~~~~-----~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~-~~  391 (483)
                      -|++++++++++.+.     ...++.+  .+.||+.++++.++++.+++ +++.++++++++++++.|+++    +. +.
T Consensus       304 iG~~~~~~~~~~~l~~~~~~~~~~~~t--~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  380 (449)
T 2cjg_A          304 VCGVMAGRRVDEVADNVFAVPSRLNST--WGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAADFPAVVL  380 (449)
T ss_dssp             SEEEEECGGGGGSTTCTTTSTTSSCCS--SSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSE
T ss_pred             EEEEEECHHHhhhhhhcccCCcccccC--CCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence            567777888887532     1122233  34589999999999998865 347889999999999999764    33 33


Q ss_pred             eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      .. .+.+.++.+.+..        .....++++.+++ +||++.+..         +..||++++..+|++||++++++|
T Consensus       381 ~~-~~~g~~~~~~~~~--------~~~~~~~~~~l~~-~Gv~v~~~g---------~~~iRi~~~~~~t~e~i~~~l~~l  441 (449)
T 2cjg_A          381 DP-RGRGLMCAFSLPT--------TADRDELIRQLWQ-RAVIVLPAG---------ADTVRFRPPLTVSTAEIDAAIAAV  441 (449)
T ss_dssp             EE-EEETTEEEEECSS--------HHHHHHHHHHHHH-TTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             eE-eeccEEEEEEECC--------hHHHHHHHHHHHH-CCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            22 2457788887742        1124467877765 699998753         134999999999999999999999


Q ss_pred             HHHHHHH
Q 011567          472 KRISAVV  478 (483)
Q Consensus       472 ~~~~~~~  478 (483)
                      +++++++
T Consensus       442 ~~~l~~~  448 (449)
T 2cjg_A          442 RSALPVV  448 (449)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=3.2e-35  Score=302.88  Aligned_cols=354  Identities=15%  Similarity=0.164  Sum_probs=261.8

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .+|++|||++++   +++|| .+|++.+|+.+++++++ .   ++...+..+...+++++|++++
T Consensus        32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~-~---~~~~~~~~~~~~~l~~~la~~~  106 (449)
T 3a8u_X           32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGH-TRKEIQEAVAKQLSTLD-Y---SPGFQYGHPLSFQLAEKITDLT  106 (449)
T ss_dssp             SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-SCHHHHHHHHHHTTTCS-C---CCSSSCCCHHHHHHHHHHHTTS
T ss_pred             CCceEEeeecCEEEECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhCC-C---ccccccCCHHHHHHHHHHHHhC
Confidence            57789999999999 799999999876   68999 59999999999998764 1   1111345678899999999999


Q ss_pred             C--CCCEEEecccHHHHHhhhhhhcc--------CCc-EEEEcCCchhHHHhHhhhcCC--------------eEEEec-
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCFCK--------KGD-LIVADEGVHWGIQNGLYLSRS--------------TVVYFK-  221 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~~~--------~gd-iI~~~~~~h~s~~~g~~~s~~--------------~v~~~~-  221 (483)
                      +  .++++++++|++|+..+++++..        ++| +|+.+..||+.+..++..++.              ..+.++ 
T Consensus       107 ~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~  186 (449)
T 3a8u_X          107 PGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTL  186 (449)
T ss_dssp             STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCC
T ss_pred             CCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCc
Confidence            5  45667779999999999987652        444 566688899877766665542              222222 


Q ss_pred             ---CC----C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567          222 ---HN----D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       222 ---~~----d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE  282 (483)
                         ++    |        +++||+.+++....      ++++|++||+++++|.+.|    +++|+++|++||++||+||
T Consensus       187 ~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~------~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~De  260 (449)
T 3a8u_X          187 LASNAYSRGMPKEGGIALADELLKLIELHDAS------NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDE  260 (449)
T ss_dssp             CGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCccccCChHHHHHHHHHHHHHHHHhcCCC------CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEec
Confidence               21    5        78888888653211      3789999999988998888    9999999999999999999


Q ss_pred             ccccccccCCCCc-cccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCC-------ceeecCCCcHH
Q 011567          283 SNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSS-------GYVFSASLPPY  351 (483)
Q Consensus       283 a~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~-------~~~fs~~~~p~  351 (483)
                      +|+.  +|++|.. ..+++++.|   |++  |+||++++.   .|++++++++++.++....       .+.++.+.||+
T Consensus       261 v~~~--~g~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~  333 (449)
T 3a8u_X          261 VITG--FGRTGSMFGADSFGVTP---DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPV  333 (449)
T ss_dssp             TTTT--TTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHH
T ss_pred             cccC--ccccCcchhhhhcCCCC---CEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHH
Confidence            9952  3444443 346777766   776  899999852   4778888899988865421       12233456899


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE  429 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~  429 (483)
                      .++++.++++.+++. ++.++++++.+++++.|+++.++++.  ..+.++++++.+.......  . ....++.+.++++
T Consensus       334 ~~aa~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~--~-~~~~~~~~~l~~~  409 (449)
T 3a8u_X          334 ACAAGLAALCLLQKE-NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA--I-VRPFEAGMALWKA  409 (449)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS--S-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc--c-ccHHHHHHHHHHC
Confidence            999999999988764 58899999999999999875333321  1235788888885421111  0 0122467766655


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                       ||++.+..          ..+||+++..+|++|+++++++|+++++++
T Consensus       410 -Gv~v~~~g----------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          410 -GFYVRFGG----------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             -TEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -CcEEecCC----------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence             99998752          239999999999999999999999998764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=4.2e-35  Score=300.51  Aligned_cols=359  Identities=18%  Similarity=0.181  Sum_probs=260.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++.+++|.++| .+|++||||+++   .++|+ .+|++.+++.+++++++..  .   ..+..+...+++++|++++
T Consensus        25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~--~---~~~~~~~~~~l~~~la~~~   98 (433)
T 1zod_A           25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHL--F---SEMLSRPVVDLATRLANIT   98 (433)
T ss_dssp             CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCC--C---TTCCCHHHHHHHHHHHHHS
T ss_pred             CCceEEEeecCEEEeCCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCccc--c---cccCCHHHHHHHHHHHHhC
Confidence            46778999999999 799999999876   47898 8999999999999886431  1   1234578899999999999


Q ss_pred             CC--CCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhc-------------CCeEEEe------cCC
Q 011567          168 GT--PDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLS-------------RSTVVYF------KHN  223 (483)
Q Consensus       168 g~--e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s-------------~~~v~~~------~~~  223 (483)
                      +.  ++.+++++|++|+..+++++   .+++++|+.+..||+.....+..+             +...+.+      +++
T Consensus        99 ~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (433)
T 1zod_A           99 PPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE  178 (433)
T ss_dssp             CTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE
T ss_pred             CCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccC
Confidence            73  45666689999999998754   454557777888998766555442             2222222      223


Q ss_pred             ---------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567          224 ---------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG  290 (483)
Q Consensus       224 ---------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg  290 (483)
                               |+++|++.+++...      .++++|++||+++++|.+.|    +++|+++|++||++||+||+|+.  +|
T Consensus       179 ~~~~~~~~~d~~~le~~l~~~~~------~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~--~g  250 (433)
T 1zod_A          179 RNGAYDYLAELDYAFDLIDRQSS------GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG--VG  250 (433)
T ss_dssp             ETTEECHHHHHHHHHHHHHHHCC------SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTT--TT
T ss_pred             CchhhhHHHHHHHHHHHHHhcCC------CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CC
Confidence                     37788887764321      14789999999888998766    99999999999999999999983  34


Q ss_pred             CCCCc-cccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC
Q 011567          291 RSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN  366 (483)
Q Consensus       291 ~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~  366 (483)
                      ++|.. ..+++++.+   |++  |+||++|+ |   |++++++++++.++.......++.+.||+.++++.++++.+++.
T Consensus       251 ~~g~~~~~~~~~~~~---di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~  324 (433)
T 1zod_A          251 RTGTMFACQRDGVTP---DIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD  324 (433)
T ss_dssp             TTSSSSTHHHHTCCC---SEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred             cCchHhHHhhcCCCC---CEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence            44543 346677765   775  89999985 4   89999999998886532221133356899999999999988764


Q ss_pred             cHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567          367 PDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                       ++.++++++.+++++.|+++    +.+... .+.+.++++.+.........+.....++.+.+++ +||++.+..... 
T Consensus       325 -~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~-  400 (433)
T 1zod_A          325 -GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPG-  400 (433)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTT-
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCC-
Confidence             47889999999999988764    222222 3457788887753110000001224467777664 699998764321 


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                          .+..+||+++..+|++|+++++++|+++++++
T Consensus       401 ----~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          401 ----MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             ----SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence                12459999999999999999999999998765

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=7.5e-35  Score=300.52  Aligned_cols=349  Identities=20%  Similarity=0.232  Sum_probs=252.0

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .+|++||||+++   +++|| .+|++.+++.+++++ +.+.      .+..+...++++++++++
T Consensus        39 ~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~  110 (453)
T 2cy8_A           39 HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAF  110 (453)
T ss_dssp             CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHC
T ss_pred             CCceEEEeecCEEEECCCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhC
Confidence            47788999999999 799999999988   88999 899999999999987 3321      124577888888888887


Q ss_pred             -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh----------cCC------eEEEecCCCHHH
Q 011567          168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL----------SRS------TVVYFKHNDMDS  227 (483)
Q Consensus       168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~----------s~~------~v~~~~~~d~~~  227 (483)
                       +.++++++++|++|+..++++   +++++++|+++..||+.....+..          .+.      .+..++++|+++
T Consensus       111 ~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~  190 (453)
T 2cy8_A          111 PSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEG  190 (453)
T ss_dssp             TTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHH
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHH
Confidence             456677779999999999988   888888999998888654322211          122      466778899999


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCC
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGV  302 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v  302 (483)
                      |++.+++...       ++++|++||+++++|.+.|    +++|+++|++||++||+||+|++.   ++|. +..+++++
T Consensus       191 le~~l~~~~~-------~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~---~~g~~~~~~~~~~  260 (453)
T 2cy8_A          191 MREVFANHGS-------DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF---RVGNHGMQALLDV  260 (453)
T ss_dssp             HHHHHHHHGG-------GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT---TTCTTHHHHHHTC
T ss_pred             HHHHHHhcCC-------CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc---ccCchhhhHHhCC
Confidence            9999875422       3789999999888898887    999999999999999999999842   2333 33467787


Q ss_pred             CCCceeEEEccccccccC--CCceeeccHHHHHHHHhc--CCceee-cCCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLS--SSGYVF-SASLPPYLASAAITAIDV-LEENPDLITKLKKN  376 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~--~~~~~f-s~~~~p~~~aaa~~al~~-l~~~~~~~~~l~~~  376 (483)
                      .|   |++  |++|++++  ++|++++++++++.++..  ...+.+ +.+.||+.++++.++++. + . +++.++++++
T Consensus       261 ~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-~~~~~~~~~~  333 (453)
T 2cy8_A          261 QP---DLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-DDVCAKINDL  333 (453)
T ss_dssp             CC---SEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-TTHHHHHHHH
T ss_pred             CC---cEE--EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-hhHHHHHHHH
Confidence            66   776  89999974  568999999998877541  111111 235689999999999998 7 4 3478899999


Q ss_pred             HHHHHHhhccCC---CceeecCCCCCEEEEEecC-----CC------CCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567          377 TAILRTGLSDIH---GLSIASNPESPIVFLILEK-----ST------GSMKNDLQLLEDIADWALKEDGVFVVTSKRSML  442 (483)
Q Consensus       377 ~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~-----~~------~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~  442 (483)
                      .+++++.|+++.   ++.....+.+.++++.+..     ..      .....+.....++.+.+++ +||++.+.     
T Consensus       334 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~-----  407 (453)
T 2cy8_A          334 GQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR-----  407 (453)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT-----
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC-----
Confidence            999999887641   3322223467899998853     10      0000012234567777665 59998421     


Q ss_pred             ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                            .  |+.++..+|++|+++++++|+++++++.
T Consensus       408 ------~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~  436 (453)
T 2cy8_A          408 ------G--SVFLSAQHEREHVEHLVTTFDRVLDRLA  436 (453)
T ss_dssp             ------T--EEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------C--CEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence                  1  3445788999999999999999988764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=1.3e-34  Score=294.10  Aligned_cols=347  Identities=17%  Similarity=0.207  Sum_probs=265.9

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.++| .+|++||||+++   +++|+ ++|++.+++.++++++...+     .....+...+++++|++++
T Consensus        21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~   94 (406)
T 4adb_A           21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTG-----NGYTNEPVLRLAKKLIDAT   94 (406)
T ss_dssp             CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCC-----TTSCCHHHHHHHHHHHHHS
T ss_pred             CCceEEeeccCEEEeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhccccc-----CCcCCHHHHHHHHHHHhhC
Confidence            46778999999999 799999999998   99999 89999999999998743211     1123467899999999999


Q ss_pred             CCCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHH
Q 011567          168 GTPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD  226 (483)
Q Consensus       168 g~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~  226 (483)
                      |.++++++++|++|+..+++++.         +++++|+.+..+|.....+....+            ..+..++++|++
T Consensus        95 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  174 (406)
T 4adb_A           95 FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN  174 (406)
T ss_dssp             SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred             CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence            99988888999999999998874         345677778888877666655544            467788889999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc----cChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI----APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i----~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      +|++.++.          ++++|+++|.++.+|.+    .++++|+++|++||+++|+||+|+.  ++++|.++. ++++
T Consensus       175 ~l~~~l~~----------~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~  242 (406)
T 4adb_A          175 SASALIDD----------STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTG--VGRTGELYAYMHYG  242 (406)
T ss_dssp             HHHTTCST----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHHHT
T ss_pred             HHHHHhcC----------CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhHHHHhcC
Confidence            98887742          37888899876665543    3499999999999999999999973  455565543 5667


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.+   |++  |++|++++  .+|++++++++++.++....+.+|  +.+++.++++.++++.++. ++..++++++.++
T Consensus       243 ~~~---d~~--t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~  314 (406)
T 4adb_A          243 VTP---DLL--TTAKALGGGFPVGALLATEECARVMTVGTHGTTY--GGNPLASAVAGKVLELINT-PEMLNGVKQRHDW  314 (406)
T ss_dssp             CCC---SEE--EECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSS--TTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHH
T ss_pred             CCC---CEE--EechhhcCCCCeEEEEEcHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence            665   777  78999983  258999999999887655444444  4589999999999998765 5788999999999


Q ss_pred             HHHhhccCCC-cee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDIHG-LSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~~~-~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +++.|+++.. +..  .....+.++++.+.....      ....++++.+++ +||.+.+..         +..+|++++
T Consensus       315 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~-~gi~v~~~~---------~~~iRi~~~  378 (406)
T 4adb_A          315 FVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA------GQAKQISQEAAK-AGVMVLIAG---------GNVVRFAPA  378 (406)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT------TCHHHHHHHHHH-TTEECEESS---------TTEEEECCC
T ss_pred             HHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH------HHHHHHHHHHHH-CCcEEeecC---------CCeEEEECC
Confidence            9999876411 111  112346788888854210      013356776655 599998743         244999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          457 AAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ..+|++|+++++++|+++++++..
T Consensus       379 ~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          379 LNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988754

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=2.9e-34  Score=291.44  Aligned_cols=359  Identities=15%  Similarity=0.142  Sum_probs=264.2

Q ss_pred             CccccCCCCeEEECCee----EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567           94 PVLESAAGPHTIISGKE----VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT  169 (483)
Q Consensus        94 ~~i~~~~g~~~~~~G~~----~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~  169 (483)
                      .++...+|.+++.+|++    +|||+++++.++..+|.+++++.+++++.+...  .....|..+++.++++.+++++|.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~--y~~~~g~~~l~~~l~~~l~~~~g~   97 (407)
T 3nra_A           20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA--YTEYRGDLGIRDLLAPRLAAFTGA   97 (407)
T ss_dssp             -------CCTTTCCSCCCCSCCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH--SCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhhhHHHhhcCCCCCceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC--cCCCCCCHHHHHHHHHHHHHHhCC
Confidence            45677788888766655    999999998888789999999999988632211  111345678999999999999986


Q ss_pred             -----CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----------CHHHHHHHHH
Q 011567          170 -----PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------DMDSLRNTLE  233 (483)
Q Consensus       170 -----e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----------d~~~Le~~l~  233 (483)
                           ++.+++++|++|+..+++++.++||.|+++.+.|.++..+++..|.+++.++++           |+++|++.++
T Consensus        98 ~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  177 (407)
T 3nra_A           98 PVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK  177 (407)
T ss_dssp             CCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH
T ss_pred             CCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh
Confidence                 567777888999999999999999999999999999999999999999888872           7888888886


Q ss_pred             HhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEE
Q 011567          234 RVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIV  310 (483)
Q Consensus       234 ~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~  310 (483)
                      +   +       +++|++..+++++|.+.|   +++|+++|++||+++|+||+|+.+.++..+.+....++....+.+++
T Consensus       178 ~---~-------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~  247 (407)
T 3nra_A          178 A---G-------ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVT  247 (407)
T ss_dssp             T---T-------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEE
T ss_pred             h---C-------CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEE
Confidence            5   1       456666667889999999   99999999999999999999998766532222222232012445788


Q ss_pred             EccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc
Q 011567          311 TAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       311 ~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      ++|+||++|..|   ||+++++++++.++.....+.++  .+++.++++.++++...+ .++.+++++++.+++.+.|++
T Consensus       248 ~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  325 (407)
T 3nra_A          248 IMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLR--AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG  325 (407)
T ss_dssp             EECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSS--SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccC--CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998666   99999999998877654444443  366666666555542111 135678888899999999998


Q ss_pred             CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567          387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       387 ~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~  466 (483)
                      ++++.+..+..+.++++.+.....       ...++++.+++++||.+.++..+..   ..+..+|++++.  |+++|++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~~--~~~~i~~  393 (407)
T 3nra_A          326 CEGVFARTPQAGSYLFPRLPKLAV-------APAEFVKILRLQAGVVVTPGTEFSP---HTADSVRLNFSQ--DHEAAVA  393 (407)
T ss_dssp             STTCBCCCCSBSSEECCBCCCBSS-------CHHHHHHHHHHHHCEECEEGGGTCT---TCTTBEEEECCS--CHHHHHH
T ss_pred             CCCceeccCCeeEEEEEeCCCCCC-------CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEeCC--CHHHHHH
Confidence            878887655556777776643110       1235666665656999998754321   013459999974  9999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          467 ACESLKRISAVV  478 (483)
Q Consensus       467 ~~~~l~~~~~~~  478 (483)
                      ++++|+++++++
T Consensus       394 ~~~~l~~~~~~~  405 (407)
T 3nra_A          394 AARRIVTLVERY  405 (407)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-33  Score=287.70  Aligned_cols=341  Identities=16%  Similarity=0.207  Sum_probs=249.2

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++.+++|.++| .+|++|||++++   +++|+..+|++++|+.++++++.. .+.+   .+..+...+++++|++++
T Consensus        24 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~   99 (419)
T 2eo5_A           24 FPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFYNIPQLELAKKLVTYS   99 (419)
T ss_dssp             CCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSCCHHHHHHHHHHHHHS
T ss_pred             CCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccCCHHHHHHHHHHHHhC
Confidence            47788999999999 799999999887   589994489999999999987532 1111   234567899999999999


Q ss_pred             CCC---CEEEecccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcC-------------CeEEEecCCC-----
Q 011567          168 GTP---DSILYSYGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSR-------------STVVYFKHND-----  224 (483)
Q Consensus       168 g~e---~~i~~~sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~-------------~~v~~~~~~d-----  224 (483)
                      |.+   +.+++++|++|+..+++++..  ++++|+.+..+|+.+..++.+++             ..+..+++++     
T Consensus       100 ~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  179 (419)
T 2eo5_A          100 PGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP  179 (419)
T ss_dssp             SCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCT
T ss_pred             CCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccc
Confidence            863   456668899999999886543  44566667788877665554432             2455665543     


Q ss_pred             ----------------HHHHH-HHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567          225 ----------------MDSLR-NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES  283 (483)
Q Consensus       225 ----------------~~~Le-~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa  283 (483)
                                      +++|+ +.+++..     .+.++++|+++|+++++|.+.|    +++|+++|++||+++|+||+
T Consensus       180 ~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-----~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~  254 (419)
T 2eo5_A          180 WHINGYENPSELVNRVIEFIEDYIFVNLV-----PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV  254 (419)
T ss_dssp             TCCCTTTCHHHHHHHHHHHHHHTHHHHTC-----CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred             ccccccccchhhHHHHHHHHHHHHHhhcc-----CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence                            45666 6555321     0113789999999888898776    99999999999999999999


Q ss_pred             cccccccCCCCc-cccccCCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567          284 NSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       284 ~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~  358 (483)
                      |+.  +|++|.. ..+++++.+   |++  |+||++|+ |    ||++++++++ .+ .....  .+.+.|+++++++.+
T Consensus       255 ~~~--~g~~g~~~~~~~~~~~~---d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~--~t~~~n~~~~~aa~a  322 (419)
T 2eo5_A          255 QMG--LGRTGKLFAIENFNTVP---DVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHS--NTFGGNALACAIGSK  322 (419)
T ss_dssp             TTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHH
T ss_pred             ccC--CccCcchhhHHhcCCCC---CEE--EecccccC-CccceEEEEEchHhh-cC-CcccC--CCCCCCHHHHHHHHH
Confidence            983  3444443 346677765   776  79999984 5    8888888877 55 22222  233568999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      +++.+++   +.++++++++++.+.|+++  +... .+.++++++.+..       +..... +++.++ ++||++.+..
T Consensus       323 al~~~~~---~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~-------~~~~~~-~~~~l~-~~Gv~v~~~~  387 (419)
T 2eo5_A          323 VIDIVKD---LLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNE-------KKVRDR-IIGESF-KRGLLLLPAG  387 (419)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSC-------HHHHHH-HHHHHH-HTTEECEEET
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEec-------CccHHH-HHHHHH-HCCCEEecCC
Confidence            9998754   7899999999999999875  2222 2357788887731       112244 677666 5699998753


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                               +..+||+++..+|++|+++++++|++++++
T Consensus       388 ---------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          388 ---------RSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                     134999999999999999999999998865

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=1.1e-33  Score=289.62  Aligned_cols=345  Identities=15%  Similarity=0.145  Sum_probs=253.2

Q ss_pred             CCc-cccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           93 PPV-LESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        93 ~~~-i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      |++ +++++|.++| .+|++|||++++   +++|+ .+|++.+++.++++++...+. +  .| ..+...+++++|++++
T Consensus        25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~-~--~~-~~~~~~~l~~~la~~~   99 (429)
T 1s0a_A           25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF-G--GI-THAPAIELCRKLVAMT   99 (429)
T ss_dssp             CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCC-S--SE-ECHHHHHHHHHHHHHS
T ss_pred             CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-c--cc-CCHHHHHHHHHHHHhC
Confidence            554 8899999999 799999999887   68998 789999999999988543211 1  12 3467789999999999


Q ss_pred             C--CCCEEEecccHHHHHhhhhhhc---c----CCc-EEEEcCCchhHHHhHhhhcC---------------CeEEEec-
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCFC---K----KGD-LIVADEGVHWGIQNGLYLSR---------------STVVYFK-  221 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~~---~----~gd-iI~~~~~~h~s~~~g~~~s~---------------~~v~~~~-  221 (483)
                      +  .++.+++++|++|+..+++++.   +    ++| +|+.+..+|+....++.+++               ...+.++ 
T Consensus       100 ~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (429)
T 1s0a_A          100 PQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ  179 (429)
T ss_dssp             CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCC
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCc
Confidence            5  4566777999999999987643   3    355 55666678876554444322               3333332 


Q ss_pred             --------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567          222 --------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV  288 (483)
Q Consensus       222 --------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~  288 (483)
                              ++|+++|++.+++...       ++++|+++|+ ++++|.+.|    +++|+++|++||+++|+||+|+.  
T Consensus       180 ~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--  250 (429)
T 1s0a_A          180 SRMDGEWDERDMVGFARLMAAHRH-------EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG--  250 (429)
T ss_dssp             SBC-CCCCGGGGHHHHHHHHHHTT-------TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT--
T ss_pred             ccccccchHHHHHHHHHHHHhCCC-------CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC--
Confidence                    3578888888865322       3789999999 888998777    99999999999999999999983  


Q ss_pred             ccCCCCc-cccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcC-Cc--eeecCCCcHHHHHHHHHHHH
Q 011567          289 LGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS-SG--YVFSASLPPYLASAAITAID  361 (483)
Q Consensus       289 lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~-~~--~~fs~~~~p~~~aaa~~al~  361 (483)
                      +|++|.. ..+++++.+   |++  |+||++++   ..|++++++++++.++... ..  ...+.+.|++.++++.++++
T Consensus       251 ~g~~g~~~~~~~~~~~~---d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~  325 (429)
T 1s0a_A          251 FGRTGKLFACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA  325 (429)
T ss_dssp             TTTTSSSSGGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             CcccchHHHhhhcCCCC---CEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence            3444443 346667655   776  78999974   2388889999988876531 11  12233568999999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          362 VLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       362 ~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .+++. +..++++++++++++.|+++   +++... .+.+.++++.+....     +   ..++.+.++ ++||++.+..
T Consensus       326 ~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~-----~---~~~l~~~l~-~~Gi~v~~~~  394 (429)
T 1s0a_A          326 ILESG-DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPV-----N---MAALQKFFV-EQGVWIRPFG  394 (429)
T ss_dssp             HHHTC-HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCB-----C---HHHHHHHHH-HTTEECCCBT
T ss_pred             HHHhC-CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcc-----c---HHHHHHHHH-HCCCEEeccC
Confidence            88764 68899999999999999875   344322 234678888875321     1   235666655 4699997631


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                                ..+||+++..+|++|+++++++|++++++
T Consensus       395 ----------~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          395 ----------KLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             ----------TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             ----------CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                      34999999999999999999999988654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=4.4e-34  Score=289.54  Aligned_cols=342  Identities=19%  Similarity=0.249  Sum_probs=262.9

Q ss_pred             cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      ..|.++.+++|.++| .+|++|+||+++   +++|+ .+|++.+++.+++++++.++.   . | ..+...+++++|+++
T Consensus        21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~---~-~-~~~~~~~l~~~la~~   94 (397)
T 2ord_A           21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSN---L-F-WNRPQMELAELLSKN   94 (397)
T ss_dssp             CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCT---T-S-EEHHHHHHHHHHHHT
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcc---c-c-CCHHHHHHHHHHHHh
Confidence            346788999999999 799999999988   89999 899999999999998755321   1 2 357889999999999


Q ss_pred             hCCCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567          167 LGTPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD  226 (483)
Q Consensus       167 ~g~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~  226 (483)
                      +|.++++++++|++|+..+++++.        +++++|+.+..+|+++..++...+.+            +..++++|++
T Consensus        95 ~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~  174 (397)
T 2ord_A           95 TFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVE  174 (397)
T ss_dssp             TTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHH
T ss_pred             cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHH
Confidence            998888888999999999998875        34567778888888877777777665            7788889999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCC-cc---ChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ-IA---PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~-i~---~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~  301 (483)
                      +|++.+++          ++++|+++++++++|. +.   ++++|+++|++||+++|+||+|+ | ++++|++.. +.++
T Consensus       175 ~l~~~l~~----------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~  242 (397)
T 2ord_A          175 DLRRKMSE----------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYG  242 (397)
T ss_dssp             HHHHHCCT----------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHT
T ss_pred             HHHHHhhc----------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhC
Confidence            99887742          3789999999999998 43   48999999999999999999997 3 455555442 4566


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      +.+   |++  |++|++++  ..|+++++++++ .++.......|  +.+++.++++.++++.+++ ++++++++++.++
T Consensus       243 ~~~---d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~  313 (397)
T 2ord_A          243 VVP---DVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTF--GGNPLACRAGVTVIKELTK-EGFLEEVEEKGNY  313 (397)
T ss_dssp             CCC---SEE--EECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSS--TTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHH
T ss_pred             CCC---Cee--eeccccCCCcCeEEEEEchHhc-ccCCCCcCCCC--CCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence            544   776  78999983  247777777766 55432223333  4588999999999998876 4688999999999


Q ss_pred             HHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          380 LRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       380 l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      +.+.|+++. ++++.  ..+.++++++.+....        ...++++.+++ +||.+.+..         +..+|++++
T Consensus       314 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~-~gi~v~~~~---------~~~iRis~~  375 (397)
T 2ord_A          314 LMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFE-NKLLVVPAG---------NNTIRFLPP  375 (397)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHH-TTEECEEET---------TTEEEECCC
T ss_pred             HHHHHHHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHH-CCCEEccCC---------CCEEEEECC
Confidence            999987642 22221  1235778888875321        12356776555 699998752         244999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+|++|+++++++|++++++
T Consensus       376 ~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          376 LTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhh
Confidence            899999999999999988753

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=1.4e-33  Score=285.55  Aligned_cols=338  Identities=17%  Similarity=0.220  Sum_probs=257.7

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++.+++|.++| .+|++|+||+++   +++|+ .+|.+.+++.+++++++.++   + .| ..+...++++++++++
T Consensus        27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~l~~~la~~~  100 (395)
T 1vef_A           27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP---Q-TL-PTPMRGEFYRTLTAIL  100 (395)
T ss_dssp             CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC---T-TS-CCHHHHHHHHHHHHTS
T ss_pred             CCccEEecccCEEEeCCCCEEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc---c-cc-CCHHHHHHHHHHHHhc
Confidence            46778999999999 799999999887   78998 88999999999998865422   1 12 4578899999999999


Q ss_pred             C--CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHHHHHH
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDSLRN  230 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~~Le~  230 (483)
                      |  .++++++++|++|+..+++++   .+++++|+.+..+|+.+...+...|.+            +..++++|+++|++
T Consensus       101 ~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~  180 (395)
T 1vef_A          101 PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR  180 (395)
T ss_dssp             CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH
T ss_pred             CCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHH
Confidence            5  456777799999999998876   455557777777887776666666554            56677789999988


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCC
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVD  305 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~  305 (483)
                      .+++          ++++|+++++++++|.+.|    +++|+++|++||+++|+||+|+ | ++..|... .+.+++.+ 
T Consensus       181 ~i~~----------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~~-  247 (395)
T 1vef_A          181 AVDE----------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIVP-  247 (395)
T ss_dssp             HCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC-
T ss_pred             Hhcc----------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCCC-
Confidence            7752          2688999999989999888    9999999999999999999998 3 45555543 24556544 


Q ss_pred             ceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          306 KIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                        |++  |++|++++  ..|++++++++++.++...  +.++.+.+++.++++.++++.+.+ ++..++++++.+++.+.
T Consensus       248 --d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~l~~~  320 (395)
T 1vef_A          248 --DIL--TLAKALGGGVPLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPWFMEK  320 (395)
T ss_dssp             --SEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred             --CEE--EEcccccCCCceEEEEehHHHHhhhccCC--cCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence              776  88999975  2388888888887765422  223335688899989999988765 34788899999999999


Q ss_pred             hccCCCcee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          384 LSDIHGLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       384 L~~~~~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      |+++. .++  ...+.++++++.+...          ..++.+.+++++||.+.+..         +..+|++++..+|+
T Consensus       321 l~~~~-~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~---------~~~iRi~~~~~~~~  380 (395)
T 1vef_A          321 LRAIP-SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG---------PTVIRFLPPLVIEK  380 (395)
T ss_dssp             HHTSC-CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS---------TTEEEECCCTTCCH
T ss_pred             HHHhh-cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC---------CCEEEEeCCCCCCH
Confidence            98763 221  1123567888887531          22566766624599998742         24499999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRIS  475 (483)
Q Consensus       462 edi~~~~~~l~~~~  475 (483)
                      +|+++++++|++++
T Consensus       381 ~~i~~~~~~l~~~l  394 (395)
T 1vef_A          381 EDLERVVEAVRAVL  394 (395)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=3.1e-32  Score=278.21  Aligned_cols=354  Identities=12%  Similarity=0.049  Sum_probs=259.7

Q ss_pred             CCccccCCCCeEE-EC--CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-
Q 011567           93 PPVLESAAGPHTI-IS--GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-  168 (483)
Q Consensus        93 ~~~i~~~~g~~~~-~~--G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-  168 (483)
                      +.+..+++|+++| .+  |++||||..++.. +..+|.+.+++.+++++...++..     ...+...++++.+++.+| 
T Consensus        42 ~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~~-~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~l~~~l~~~~g~  115 (421)
T 3l8a_A           42 TRPDRLNQFTYKWKTSENNPELLQMWVADMD-FLPVPEIKEAIINYGREHIFGYNY-----FNDDLYQAVIDWERKEHDY  115 (421)
T ss_dssp             CCCCCTTTTBTTTGGGTTCTTCEECCSSCCC-SCCCHHHHHHHHHHHHHCCSSCBC-----CCHHHHHHHHHHHHHHHCC
T ss_pred             cccccCCCCCccccccCCCCCeeecccCCCC-CCCCHHHHHHHHHHHhcCCcCCCC-----CCHHHHHHHHHHHHHHhCC
Confidence            4556788999999 66  8999999887543 337899999999999873221111     125677788888888877 


Q ss_pred             ---CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhh
Q 011567          169 ---TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTA  237 (483)
Q Consensus       169 ---~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~  237 (483)
                         .+..++.++|++|+..++++++++||.|++..+.|.++...+...+.+++.++.+        |+++|++.+++.  
T Consensus       116 ~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~--  193 (421)
T 3l8a_A          116 AVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN--  193 (421)
T ss_dssp             CCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT--
T ss_pred             CCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc--
Confidence               2345566777889999999999999999999898888888888888888777643        889999888641  


Q ss_pred             hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEc
Q 011567          238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTA  312 (483)
Q Consensus       238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~  312 (483)
                             ++++|+++++++++|.+.|   |++|+++|++||++||+||+|+.+.  .+|........+.+  .++++++.
T Consensus       194 -------~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~--~~g~~~~~~~~~~~~~~~~~i~~~  264 (421)
T 3l8a_A          194 -------NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLA--LFGNTHHSLNTLDASYKDFTIILS  264 (421)
T ss_dssp             -------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB--CTTCCCCCGGGSCTTGGGTEEEEE
T ss_pred             -------CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc--cCCCCCccHHHcCchhcCcEEEEE
Confidence                   3678888999999998854   8999999999999999999998754  33443333333333  24567888


Q ss_pred             cccccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccC
Q 011567          313 AMGHALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       313 s~~K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~  387 (483)
                      |++|++|..|   |+++++ +++++.++.....+.+ .+.|++.++++.++++..++ .+++.++++++.+++.+.|++.
T Consensus       265 s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~-~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (421)
T 3l8a_A          265 SATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQ-HEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK  343 (421)
T ss_dssp             CSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eChhhccCchhheEeEEcCCHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998555   888887 8888877654322222 24588888888888875332 2457788889999999999877


Q ss_pred             CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567          388 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       388 ~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      +++.+..+..+.+.++.+.....       ...++.+.++++.||++.++......   .+..+||+++  +|+++|+++
T Consensus       344 ~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~~~--~~~~~i~~~  411 (421)
T 3l8a_A          344 TKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKE---GKYFARLNVA--TPKNTVQEA  411 (421)
T ss_dssp             CSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHH
T ss_pred             CCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCC---CCCEEEEEec--CCHHHHHHH
Confidence            78888765555566687753110       01246676666679999886533210   0234999987  699999999


Q ss_pred             HHHHHHHHH
Q 011567          468 CESLKRISA  476 (483)
Q Consensus       468 ~~~l~~~~~  476 (483)
                      +++|+++++
T Consensus       412 l~~l~~~l~  420 (421)
T 3l8a_A          412 LSRIISVFG  420 (421)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHh
Confidence            999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=7.8e-32  Score=271.90  Aligned_cols=355  Identities=12%  Similarity=0.031  Sum_probs=259.3

Q ss_pred             CccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC----
Q 011567           94 PVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----  168 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g----  168 (483)
                      .+..+++|.++| .+|+++|||..++. .+..+|.+.+++.+++.+...+...     ...+...++++.+++.+|    
T Consensus        11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~la~~l~~~~g~~~~   84 (391)
T 3dzz_A           11 HVPKRQGNSIKWGVLKEKELPMWIAEM-DFKIAPEIMASMEEKLKVAAFGYES-----VPAEYYKAVADWEEIEHRARPK   84 (391)
T ss_dssp             SCCCCCTTBTTTTTCCTTCEECCSSCC-SSCCCHHHHHHHHHHHTTCCCCCBC-----CCHHHHHHHHHHHHHHHSCCCC
T ss_pred             hhccCCCCccceeccCCCceeccccCC-CCCCCHHHHHHHHHHHhcCcCCCCC-----CCHHHHHHHHHHHHHHhCCCCC
Confidence            556788999999 79999999998854 3337899999999999863222111     134567777888887777    


Q ss_pred             CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhh
Q 011567          169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNK  240 (483)
Q Consensus       169 ~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~  240 (483)
                      .++.++.++|++++..+++++.++||.|+++.+.|.++...+...|.+++.++.        .|+++|++.+++.     
T Consensus        85 ~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----  159 (391)
T 3dzz_A           85 EDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP-----  159 (391)
T ss_dssp             GGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST-----
T ss_pred             HHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc-----
Confidence            235566677799999999999999999999999999999999999999988876        5788888887531     


Q ss_pred             hccCccEEEEEecccCCCCCcc---ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEcccc
Q 011567          241 RAKKLRRYIVVEAVYQNSGQIA---PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMG  315 (483)
Q Consensus       241 ~~~~~~~~iv~e~v~~~~G~i~---~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~  315 (483)
                          ++++|+++++++++|.+.   ++++|+++|++||+++|+||+|+.+..+  |........+..  .+.++++.|++
T Consensus       160 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~d~~i~~~s~s  233 (391)
T 3dzz_A          160 ----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT--DEDITPAFTVDWDAKNWVVSLISPS  233 (391)
T ss_dssp             ----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS--SCCCCCGGGSCTTTGGGEEEEECSH
T ss_pred             ----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCC--CCCceehhhcCccccCcEEEEEeCh
Confidence                267778888899999994   4899999999999999999999876543  322222222221  22348899999


Q ss_pred             ccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCC
Q 011567          316 HALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHG  389 (483)
Q Consensus       316 K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~  389 (483)
                      |++|..|   ||++++ +++++.++.....+.+ .+.++..++++.++++..++ .++..++++++.+++.+.|++ +++
T Consensus       234 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  312 (391)
T 3dzz_A          234 KTFNLAALHAACAIIPNPDLRARAEESFFLAGI-GEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPE  312 (391)
T ss_dssp             HHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTC-SSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchhheEEEECCHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9998556   998886 8888877654222111 13466677777777765321 245788889999999999988 788


Q ss_pred             ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHH
Q 011567          390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE  469 (483)
Q Consensus       390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~  469 (483)
                      +.+..+..+.++++.+....       ....++.+.+++++||.+.++......   .+..+|++++  +++++++++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~~~~~i~~~l~  380 (391)
T 3dzz_A          313 VKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGN---GHEFVRINLA--CPKELVIDGMQ  380 (391)
T ss_dssp             SEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTT---GGGEEEEECC--SCHHHHHHHHH
T ss_pred             cEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEec--CCHHHHHHHHH
Confidence            88876655666667774311       013356776665569999886543210   0234999987  69999999999


Q ss_pred             HHHHHHHHH
Q 011567          470 SLKRISAVV  478 (483)
Q Consensus       470 ~l~~~~~~~  478 (483)
                      +|+++++++
T Consensus       381 ~l~~~l~~~  389 (391)
T 3dzz_A          381 RLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999988653

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3.6e-32  Score=273.12  Aligned_cols=345  Identities=16%  Similarity=0.137  Sum_probs=251.5

Q ss_pred             cccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC------
Q 011567           96 LESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG------  168 (483)
Q Consensus        96 i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g------  168 (483)
                      ..+++|.++| .+|+++|||.+++. .+..+|.+.+++.+++++...+. ++   .+     .++++.++++++      
T Consensus         9 ~~~~~g~~~~d~~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-~~---~~-----~~lr~~la~~~~~~~~~~   78 (377)
T 3fdb_A            9 DLRARNTMKWTRYGQGVLPLWVAES-DFSTCPAVLQAITDAVQREAFGY-QP---DG-----SLLSQATAEFYADRYGYQ   78 (377)
T ss_dssp             HHHHTCCHHHHSSCTTSEECCSSCC-CSCCCHHHHHHHHHHHHTTCCSS-CC---SS-----CCHHHHHHHHHHHHHCCC
T ss_pred             HhcCCCCceeeccCCCeeeecccCC-CCCCCHHHHHHHHHHHHcCCCCC-CC---CC-----HHHHHHHHHHHHHHhCCC
Confidence            4578999999 89999999999843 33368999999999998622211 11   12     345555555544      


Q ss_pred             --CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhcc
Q 011567          169 --TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       169 --~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~  243 (483)
                        .++.+++++|++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+   |+++|++.+++.        
T Consensus        79 ~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~--------  150 (377)
T 3fdb_A           79 ARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAG--------  150 (377)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTT--------
T ss_pred             CCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccC--------
Confidence              3467777888999999999999999999999999999999999999999999886   889998888652        


Q ss_pred             CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-CccccccCCCCCceeEEEcccccccc
Q 011567          244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-RGLTEHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~g~~~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                        +++|++..+++++|.+.|   +++|+++|++||+++|+||+|+.+..+  | ........+...+.+++++|++|++|
T Consensus       151 --~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g  226 (377)
T 3fdb_A          151 --ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWN  226 (377)
T ss_dssp             --CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTT
T ss_pred             --CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhcc
Confidence              456666666889999987   677888899999999999999875443  3 22222222221344688899999997


Q ss_pred             CCC---ceee-ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCCceee
Q 011567          320 TEG---GFCT-GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIA  393 (483)
Q Consensus       320 ~~G---G~i~-~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~~~i~  393 (483)
                      ..|   ||++ +++++++.++......  +.+.+++.++++.++++..++ ..+.+++++++.+++.+.|++ ++++.+.
T Consensus       227 ~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  304 (377)
T 3fdb_A          227 IAGLKCAQIIFSNPSDAEHWQQLSPVI--KDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKIT  304 (377)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHSCHHH--HCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEC
T ss_pred             CcchhheEEEeCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe
Confidence            555   8755 4788888876543222  234578888888888875322 245788889999999999988 7788887


Q ss_pred             cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       394 ~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .+..+.++++.+.....    +    .+++..+++++||.+.++..+...   .+..+|++++.  +++++++++++|++
T Consensus       305 ~~~~~~~~~~~~~~~~~----~----~~~~~~l~~~~gi~v~~g~~~~~~---~~~~~Ris~~~--~~e~i~~~l~~l~~  371 (377)
T 3fdb_A          305 PMQATYLMWIDFRDTTI----E----GSPSEFFIEKAKVAMNDGAWFGED---GTGFCRLNFAT--SREVLEEAIDRMAK  371 (377)
T ss_dssp             CCSBCSEEEEECTTSCC----C----SCHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEEECcccCC----C----HHHHHHHHHhCCEEecCChhccCC---CCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence            66556666787754211    1    135666676669999887543221   12459999874  89999999999998


Q ss_pred             HHHH
Q 011567          474 ISAV  477 (483)
Q Consensus       474 ~~~~  477 (483)
                      ++++
T Consensus       372 ~l~~  375 (377)
T 3fdb_A          372 AVSH  375 (377)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8754

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=3.2e-31  Score=266.09  Aligned_cols=333  Identities=20%  Similarity=0.251  Sum_probs=246.6

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|+++++++|.+++ .+|+.|+||+++   +.+|| .+|.+.+++.+++++++..+  .  .| ..+...+++++|++++
T Consensus        10 ~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~--~--~y-~~~~~~~l~~~la~~~   83 (375)
T 2eh6_A           10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGH-AYPKLTEALKEQVEKLLHVS--N--LY-ENPWQEELAHKLVKHF   83 (375)
T ss_dssp             EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHHHCSCCC--T--TB-CCHHHHHHHHHHHHTS
T ss_pred             CCccEEeeecCEEEeCCCCEEEEcCCcccccccCC-CCHHHHHHHHHHHHhccccC--c--cc-CCHHHHHHHHHHHhhc
Confidence            35678999999998 799999999987   45676 78999999999998864321  1  23 2356789999999999


Q ss_pred             CC-CCEEEecccHHHHHhhhhh---hc---cCC-cEEEEc-CCchhHHHhHhhhcCC------------eEEEecCCCHH
Q 011567          168 GT-PDSILYSYGLSTMFSAIPC---FC---KKG-DLIVAD-EGVHWGIQNGLYLSRS------------TVVYFKHNDMD  226 (483)
Q Consensus       168 g~-e~~i~~~sG~~a~~~ai~~---~~---~~g-diI~~~-~~~h~s~~~g~~~s~~------------~v~~~~~~d~~  226 (483)
                      |. ++.+++++|++|+..++++   ++   ++| |.|++. ..+|..........+.            .+..++++|++
T Consensus        84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  163 (375)
T 2eh6_A           84 WTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDID  163 (375)
T ss_dssp             SSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHH
T ss_pred             CCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHH
Confidence            98 6777789999999988864   45   566 655554 4567655544443322            26667778888


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG  301 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~  301 (483)
                      +|++.+++          ++++|+++++++++|.+.|    +++|+++|++||+++|+||+|+.  +|.++.+. .+.++
T Consensus       164 ~l~~~l~~----------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~--~~~~~~~~~~~~~~  231 (375)
T 2eh6_A          164 SVYKLLDE----------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTG--IGRTGEFYAYQHFN  231 (375)
T ss_dssp             HHHTTCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGT
T ss_pred             HHHHHhcC----------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCcchhhhhcC
Confidence            88876642          3688999999999999988    99999999999999999999983  34444433 34455


Q ss_pred             CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI  379 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~  379 (483)
                      ..+   |++  |+||++++  ..|++++++++++.++....+..+  +.+++.++++.++++.++   +..++++++.++
T Consensus       232 ~~~---d~~--s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~  301 (375)
T 2eh6_A          232 LKP---DVI--ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTF--GGNPLACRAGTVVVDEVE---KLLPHVREVGNY  301 (375)
T ss_dssp             CCC---SEE--EECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSS--TTCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CCC---CEE--EEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCC--CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            433   776  78899983  238888888888776543233333  447888888888888775   588899999999


Q ss_pred             HHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          380 LRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       380 l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      +.+.|++++. ... .+.++++++.++.+          ..++++.+++ +||.+.+..         +..+|++++..+
T Consensus       302 l~~~L~~~~~-~~~-~~~g~~~~~~~~~~----------~~~~~~~l~~-~gi~~~~~~---------~~~iRi~~~~~~  359 (375)
T 2eh6_A          302 FKEKLKELGK-GKV-KGRGLMLGLELERE----------CKDYVLKALE-KGLLINCTA---------GKVLRFLPPLII  359 (375)
T ss_dssp             HHHHHHHTTS-SEE-EEETTEEEEECSSC----------CHHHHHHHHH-TTEECEEET---------TTEEEECCCTTC
T ss_pred             HHHHHHHHhc-CCc-eEEEEEEEEEEcCc----------HHHHHHHHHH-CCCEEecCC---------CCEEEEECCCCC
Confidence            9999988633 222 23578888887431          1246666554 699998642         244999999899


Q ss_pred             CHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRI  474 (483)
Q Consensus       460 t~edi~~~~~~l~~~  474 (483)
                      |++|+++++++|+++
T Consensus       360 ~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          360 QKEHIDRAISVLREI  374 (375)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999875

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.98  E-value=1.5e-30  Score=264.24  Aligned_cols=349  Identities=15%  Similarity=0.178  Sum_probs=248.5

Q ss_pred             CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecc
Q 011567          108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSY  177 (483)
Q Consensus       108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~s  177 (483)
                      |+++|||+++  +..++ +++.+.+++.+++++.+.    ... |+......++++.+++++    |.    ++.++.++
T Consensus        33 g~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~----~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g  106 (407)
T 2zc0_A           33 GVKLISLAAGDPDPELI-PRAVLGEIAKEVLEKEPK----SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG  106 (407)
T ss_dssp             SCCCEECCSCCCCTTTS-CHHHHHHHHHHHHHHCGG----GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESH
T ss_pred             CCceEeCCCCCCCchhC-CHHHHHHHHHHHHhhccc----ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecC
Confidence            6789999887  34555 678999999999987431    112 333333567777777777    72    34556677


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEe
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVE  252 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e  252 (483)
                      |++|+..++++++++||.|+++.+.|.++...+...|.+++.++.+    |+++|++.++....+   . .++++| +++
T Consensus       107 ~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~---~-~~~~~v~~~~  182 (407)
T 2zc0_A          107 GTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAK---G-QKVKLIYTIP  182 (407)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT---T-CCEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcc---c-CCceEEEECC
Confidence            7899999999999999999999999988888888899988887753    788898888632100   0 125565 567


Q ss_pred             cccCCCCCccChH---HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeec
Q 011567          253 AVYQNSGQIAPLD---ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTG  327 (483)
Q Consensus       253 ~v~~~~G~i~~L~---~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~  327 (483)
                      .+++++|.+.|++   +|+++|++||+++|+||+|+.+.++  |........+.+.+.+++++|++|++|+  .+||+++
T Consensus       183 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~  260 (407)
T 2zc0_A          183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYE--GGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIA  260 (407)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSS--CSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEEC
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccC--CCCCCChhhcCCCCCEEEEcccccccCCCcceEEEec
Confidence            7888899999965   9999999999999999999987653  2322111222223346888999999983  2599999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEE
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVF  402 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l----~~~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~~i~~  402 (483)
                      ++++++.++.....+.++.  +++.++++.++++..    ....+..++++++.+++.+.|++ .+++.+..+..+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~  338 (407)
T 2zc0_A          261 EGEILKKVLMQKQPIDFCA--PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVM  338 (407)
T ss_dssp             CHHHHHHHHHHHTTTTSSS--CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEE
T ss_pred             CHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEE
Confidence            9999888776544444443  677777777777653    23345788888999999999976 4677665454567888


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +.++...     +   ..++.+.++++.||.+.+...+.... ..+..+|++++.. |++|+++++++|++++++++.
T Consensus       339 ~~~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~~~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          339 FFLPEGA-----D---GISFANELMEREGVVVVPGKPFYTDE-SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             EECSTTC-----C---HHHHHHHHHHHTCEECBCSGGGCSSS-CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEcCCCC-----C---HHHHHHHHHHhCCeEEECchhccCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence            8874311     1   23567766665599998765332110 0124599999876 899999999999999988754

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.98  E-value=1.8e-30  Score=261.92  Aligned_cols=350  Identities=11%  Similarity=0.029  Sum_probs=255.3

Q ss_pred             CccccCCCCeEE-ECC-----eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           94 PVLESAAGPHTI-ISG-----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        94 ~~i~~~~g~~~~-~~G-----~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .+..+++|.++| .+|     +.+|||.+++. ++..+|.+.+++.+++.+...+. +    .+..+...++++.+++++
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-~----~~~~~~~~~l~~~l~~~~   84 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM-DFKAAPCIIDSLKNRLEQEIYGY-T----TRPDSYNESIVNWLYRRH   84 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC-SSCCCHHHHHHHHHHHTTCCCCC-B----CCCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCceeeeecccccCCCCceeccccCC-CCCCCHHHHHHHHHHHhCCCCCC-C----CCCHHHHHHHHHHHHHHh
Confidence            345678899999 554     45699998864 44478999999999997632211 1    134678889999999998


Q ss_pred             C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------CHHHHHHHHHH
Q 011567          168 G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLER  234 (483)
Q Consensus       168 g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~  234 (483)
                      |    .++.+++++|++++..+++++.++||.|+++.+.|.++...+...|.+++.++.+         |+++|++.+++
T Consensus        85 g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  164 (391)
T 4dq6_A           85 NWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD  164 (391)
T ss_dssp             CCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred             CCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence            8    3467777888999999999999999999999999999999999999999888765         77777776643


Q ss_pred             hhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeE
Q 011567          235 VTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDI  309 (483)
Q Consensus       235 ~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di  309 (483)
                                 +++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+..+  |........+.+  .+.++
T Consensus       165 -----------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i  231 (391)
T 4dq6_A          165 -----------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK--KHKHIPMASISKEFEKNTI  231 (391)
T ss_dssp             -----------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEE
T ss_pred             -----------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC--CCCccCHHHcCccccCcEE
Confidence                       456777778889999955   899999999999999999999876543  333322223322  13358


Q ss_pred             EEccccccccCCC---ceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATEG---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~G---G~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++|++|++|..|   ||+++++ ++++.++.....+. ..+.++..++++.++++..++ .++..++++++.+++.+.|
T Consensus       232 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  310 (391)
T 4dq6_A          232 TCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYI  310 (391)
T ss_dssp             EEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999997555   8888765 78877654422222 224577888888888775322 2457788889999999999


Q ss_pred             cc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          385 SD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       385 ~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      ++ ++++.+..+..+.+.++.++....       ...++.+.++++.||.+.++......   .+..+|++++  +++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~~~~~  378 (391)
T 4dq6_A          311 NENMPKLKVRKPEGTYLLWVDFSALGL-------SDEELESILVQKGKVALNQGNSFGIG---GSGYQRINLA--CPRSM  378 (391)
T ss_dssp             HHHCTTSEECCCSBSSEEEEECGGGCC-------CHHHHHHHHHHTTCEECEEGGGGCTT---CTTEEEEECC--SCHHH
T ss_pred             HhhCCCCEecCCCccEEEEEEhhhcCC-------CHHHHHHHHHHhCCEEeeCchhhCCC---CCCeEEEEEc--CCHHH
Confidence            87 678888765555666677753110       12356776655449999886543211   1245999987  69999


Q ss_pred             HHHHHHHHHHHH
Q 011567          464 LVKACESLKRIS  475 (483)
Q Consensus       464 i~~~~~~l~~~~  475 (483)
                      +++++++|++++
T Consensus       379 i~~~l~~l~~~l  390 (391)
T 4dq6_A          379 LEEALIRIKNAI  390 (391)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.98  E-value=6.3e-31  Score=263.69  Aligned_cols=330  Identities=15%  Similarity=0.147  Sum_probs=241.3

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEeccc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYG  178 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~sG  178 (483)
                      +|++++||.++.+ ++..+|.+.+++.+++++...       .|+......++++.++++++        .++.+++++|
T Consensus        27 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~   98 (370)
T 2z61_A           27 EGKKVIHLEIGEP-DFNTPKPIVDEGIKSLKEGKT-------HYTDSRGILELREKISELYKDKYKADIIPDNIIITGGS   98 (370)
T ss_dssp             TTCCCEECCCCSC-SSCCCHHHHHHHHHHHHTTCC-------SCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred             cCCCEEEccCCCC-CCCCCHHHHHHHHHHHHcCcc-------CCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence            3678999998844 333468999999999876211       12222224566677777653        2467777889


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++++..+++++.++||.|+++.+.|.++...+...|.+++.++ .|+++|++.+++          ++++|+++++++++
T Consensus        99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l~~~l~~----------~~~~v~~~~p~npt  167 (370)
T 2z61_A           99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESLEEALSD----------KTKAIIINSPSNPL  167 (370)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHHHHHCCS----------SEEEEEEESSCTTT
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHHHHhccc----------CceEEEEcCCCCCc
Confidence            9999999999999999999999999999999999999998888 788888877643          25677778888899


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.|++ |+++|++||+++|+||+|+.+.++.....+....+  ..+.|++++|++|++|..|   ||+++++++++.+
T Consensus       168 G~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~  244 (370)
T 2z61_A          168 GEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDE--NLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAI  244 (370)
T ss_dssp             CCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCT--TCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred             CcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccC--CCCcEEEEecChhccCCccceEEEEEECHHHHHHH
Confidence            9999999 99999999999999999998765421112212111  2356899999999998555   9999999998887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHH-Hh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDV-LE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~-l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      +.....+.+  +.+++.++++.++++. .+ ..++.+++++++.+++.+.|+++ |+++..+..+.++++.++.      
T Consensus       245 ~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~------  315 (370)
T 2z61_A          245 LKLQQNLFI--SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE------  315 (370)
T ss_dssp             HHHHHHHTS--SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS------
T ss_pred             HHHHhhccc--CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC------
Confidence            654333323  4577777777777764 22 22457788889999999999887 8777654445566666532      


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                          ...++.+.+++++||.+.+...+...   .+..+|++++  ++++++++++++|+++++
T Consensus       316 ----~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          316 ----DGREFAYKLLKEKFVALTPGIGFGSK---GKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             ----CHHHHHHHHHHHHCEECEEGGGGCGG---GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             ----CHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence                12356776664569999886543210   1245999998  699999999999998764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.98  E-value=1.4e-30  Score=262.68  Aligned_cols=340  Identities=14%  Similarity=0.175  Sum_probs=239.4

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~  182 (483)
                      +|++++||.++.+ .+..+|.+.+++.+++++...+.+   ...|..++...+++.+.+.+|.    ++.+++++|++|+
T Consensus        28 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~  103 (388)
T 1j32_A           28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQGKTRYG---PAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCC---CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             cCCCEEECCCCCC-CCCCCHHHHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence            5788999999854 333568999999999876211111   1123334444444444444452    3456667789999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ..+++++.++||.|+++.+.|.++...++..|.+++.++.+       |+++|++.+++          ++++|++++++
T Consensus       104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p~  173 (388)
T 1j32_A          104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP----------KTKLLVFNTPS  173 (388)
T ss_dssp             HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT----------TEEEEEEESSC
T ss_pred             HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc----------CceEEEEeCCC
Confidence            99999999999999999999999988888899998888753       56667666532          26777888888


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEccccccccCCC---ceeec
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      +++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+.+  .+.|++++|+||++|..|   ||+++
T Consensus       174 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~  251 (388)
T 1j32_A          174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG  251 (388)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccC--CCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence            88999976   899999999999999999999986653  222211222221  235899999999998555   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.++.......+  +.+++.+.++.++++..++ .++.+++++++.+++.+.|++++++.+..+..+.++++.+.
T Consensus       252 ~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~  329 (388)
T 1j32_A          252 PVPLVKAATKIQGHSTS--NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA  329 (388)
T ss_dssp             CHHHHHHHHHHHHTTTC--SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG
T ss_pred             CHHHHHHHHHHHhhccc--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecC
Confidence            99988877654322223  3467777777777763221 23577888899999999998877887765444555555553


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .. +      ....++++.+++++||.+.+......     +..+|++++  +|++++++++++|+++++++
T Consensus       330 ~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          330 KT-G------RSSLDFCSELLDQHQVATVPGAAFGA-----DDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             GG-T------CCHHHHHHHHHHHHCEECEEGGGGTC-----TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CC-C------CCHHHHHHHHHHhCCEEEeChhhhCC-----CCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            20 0      01235677666546999988653321     345999986  69999999999999998775

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.98  E-value=9.1e-30  Score=257.80  Aligned_cols=342  Identities=13%  Similarity=0.150  Sum_probs=245.2

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCc--ccChHHHHHHHHHHHhhhCC---CCEEEecccHH
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF--YGTIDVHLDCEARIAKFLGT---PDSILYSYGLS  180 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~--~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~  180 (483)
                      .+|+++++|..+.. +. .+|.+.+++.++++++......+...  |...+...+++++|++++|.   ++.++.++|++
T Consensus        19 ~~g~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~   96 (406)
T 1kmj_A           19 VNGLPLAYLDSAAS-AQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE   96 (406)
T ss_dssp             ETTEECEECCTTTC-CC-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred             cCCCceEEecCCcc-CC-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhH
Confidence            35777676666543 34 67899999999998753221111111  23456788999999999998   34566688889


Q ss_pred             HHHhhhhhh----ccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccE
Q 011567          181 TMFSAIPCF----CKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       181 a~~~ai~~~----~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      |+..+++++    .++||.|++..+.|.+...+    +...|.+++.++.+     |+++|++.+++          +++
T Consensus        97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~  166 (406)
T 1kmj_A           97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE----------KTR  166 (406)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT----------TEE
T ss_pred             HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc----------CCe
Confidence            999999999    78999999888888765433    45668888888764     67888877642          268


Q ss_pred             EEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee
Q 011567          248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT  326 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~  326 (483)
                      +|+++++++++|.+.|+++|+++|++||+++|+||+|+.|...   ..+ .  .   .++|++++|++|++|+.| |+++
T Consensus       167 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~---~~~-~--~---~~~d~~~~s~~K~~g~~G~G~~~  237 (406)
T 1kmj_A          167 LLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP---VDV-Q--A---LDCDFYVFSGHKLYGPTGIGILY  237 (406)
T ss_dssp             EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---CCH-H--H---HTCSEEEEEGGGTTSCTTCEEEE
T ss_pred             EEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC---Ccc-c--c---cCCCEEEEEchhccCCCCcEEEE
Confidence            8999999999999999999999999999999999999875431   111 1  1   134899999999999877 9999


Q ss_pred             ccHHHHHHHHhcCCc-------------------eeecCCCcHHHHHHHH-HHHHHHhc--CcHHHHHHHHHHHHHHHhh
Q 011567          327 GSARVVDHQRLSSSG-------------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~-------------------~~fs~~~~p~~~aaa~-~al~~l~~--~~~~~~~l~~~~~~l~~~L  384 (483)
                      +++++++.++....+                   +.|..+.+++.+.++. ++++.+.+  .+++.++++++.+++.+.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  317 (406)
T 1kmj_A          238 VKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL  317 (406)
T ss_dssp             ECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            999998876543221                   1122233444444444 77887753  2467888999999999999


Q ss_pred             ccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCC
Q 011567          385 SDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       385 ~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t  460 (483)
                      ++++++++..+. .++++.+.++..      +   ..++.+. |.++||.+.++.....+   ....+..+|++++..+|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t  387 (406)
T 1kmj_A          318 ESVPDLTLYGPQNRLGVIAFNLGKH------H---AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT  387 (406)
T ss_dssp             TTSTTEEEESCTTCCSEEEEEETTC------C---HHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC
T ss_pred             hcCCCeEEecCCCcCCEEEEEECCC------C---HHHHHHH-HhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC
Confidence            988788877542 677888777421      1   2245654 45669999876431100   00113459999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAVV  478 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~~  478 (483)
                      ++|+++++++|+++++.+
T Consensus       388 ~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          388 HEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999988754

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.98  E-value=6.8e-30  Score=254.39  Aligned_cols=332  Identities=15%  Similarity=0.104  Sum_probs=250.4

Q ss_pred             CCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEe
Q 011567          100 AGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILY  175 (483)
Q Consensus       100 ~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~  175 (483)
                      +|.+++ .+|+++|||+++ +.++  .+|++.+++.+++++..        .| ..+...++++++++++|.  ++.+++
T Consensus         6 ~~~~~~~~~~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y-~~~~~~~l~~~la~~~~~~~~~i~~~   74 (354)
T 3ly1_A            6 ESAAFTAPSTDNPIRINFNENPLG--MSPKAQAAARDAVVKAN--------RY-AKNEILMLGNKLAAHHQVEAPSILLT   74 (354)
T ss_dssp             ---CCCCCCSSSCEECSSCCCSSC--CCHHHHHHHHHTGGGTT--------SC-CHHHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred             ccccccCCCCCceEEccCCCCCCC--CCHHHHHHHHHHHhhCc--------CC-CCCchHHHHHHHHHHhCCChHHEEEe
Confidence            344555 678999999998 4443  67999999999887521        22 235678999999999995  456777


Q ss_pred             cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++|++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+     |+++|++.+++..        ++++|+
T Consensus        75 ~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~--------~~~~v~  146 (354)
T 3ly1_A           75 AGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYS--------GPSIVY  146 (354)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCS--------SCEEEE
T ss_pred             CChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCC--------CCCEEE
Confidence            888899999999999999999999999999999999999999999887     8899998886411        267777


Q ss_pred             EecccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      ++.+++++|.+.|.+++.++++.  ||+++|+||+|+.+..+..+.......+.. .+.+++++|++|++|..|   ||+
T Consensus       147 l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~  225 (354)
T 3ly1_A          147 LVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQG-AENIILLKTFSKIHAMAGMRVGYA  225 (354)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTT-CSSEEEEEESSSTTCCGGGCCEEE
T ss_pred             EeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhc-CCCEEEEeeChhhccChhhhheee
Confidence            78888999999998888888777  999999999998765443222332222211 144788999999998555   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      ++++++++.++.....    .+.++..++++.++++......+.+++++++.+++.+.|+++ ++.+. ++.++++++.+
T Consensus       226 ~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~  299 (354)
T 3ly1_A          226 VAHPTVIALMGRYVAG----EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQL  299 (354)
T ss_dssp             ECCHHHHHHHGGGTTC----SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEEC
T ss_pred             ecCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEEC
Confidence            9999999988766544    245788888887777644333467888889999999999886 77766 34677888877


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.       +   ..++.+.+. ++||.+. ..++.     .+..+|++++   |++|+++++++|++++++
T Consensus       300 ~~-------~---~~~~~~~l~-~~gi~v~-g~~~~-----~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          300 VV-------P---LKDYQTHMA-DAGVLIG-RAFPP-----ADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             SS-------C---HHHHHHHHH-HTTEECC-CCCTT-----CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             CC-------C---HHHHHHHHH-HCCEEEe-ecCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            43       1   235666655 4699987 44432     1345999975   899999999999988764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=6.8e-30  Score=260.03  Aligned_cols=342  Identities=16%  Similarity=0.188  Sum_probs=249.5

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC--hHHHHHHHHHHHhhhCC---CCEEEecccHH
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT--IDVHLDCEARIAKFLGT---PDSILYSYGLS  180 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~--~~~~~~l~~~La~~~g~---e~~i~~~sG~~  180 (483)
                      .+|+++++|.++.+ +. .++.+.+++.++++++......+...|+.  .+...++++.|++++|.   ++.+++++|++
T Consensus        24 ~~g~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~  101 (420)
T 1t3i_A           24 INGHPLVYLDNAAT-SQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE  101 (420)
T ss_dssp             ETTEECEECBTTTC-CC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred             cCCCceEEecCCcc-CC-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHH
Confidence            57888999998865 34 67999999999998854322211223443  46678999999999998   56777789999


Q ss_pred             HHHhhhhhh----ccCCcEEEEcCCchhHH----HhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccE
Q 011567          181 TMFSAIPCF----CKKGDLIVADEGVHWGI----QNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       181 a~~~ai~~~----~~~gdiI~~~~~~h~s~----~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      |+..+++++    .++||.|++..+.|.+.    ...+...|.+++.++.     .|+++|++.+++          +++
T Consensus       102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----------~~~  171 (420)
T 1t3i_A          102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE----------KTK  171 (420)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT----------TEE
T ss_pred             HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC----------Cce
Confidence            999999999    88999999888888774    3445567888888875     367777766632          267


Q ss_pred             EEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee
Q 011567          248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT  326 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~  326 (483)
                      +|+++++++++|.+.|+++|.++|++||+++|+||+|++|....   .. ..+     ++|++++|++|.+|+.| |+++
T Consensus       172 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~---~~-~~~-----~~di~~~s~sK~~~~~g~G~~~  242 (420)
T 1t3i_A          172 LVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL---DV-QLI-----DCDWLVASGHKMCAPTGIGFLY  242 (420)
T ss_dssp             EEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---CH-HHH-----TCSEEEEEGGGTTSCTTCEEEE
T ss_pred             EEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC---ch-hhc-----CCCEEEEehhhhcCCCceEEEE
Confidence            88999999999999999999999999999999999998764321   11 112     24899999999888665 8999


Q ss_pred             ccHHHHHHHHhcCCc------------------eeecCCCcHHHHHHHH-HHHHHHhc--CcHHHHHHHHHHHHHHHhhc
Q 011567          327 GSARVVDHQRLSSSG------------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~------------------~~fs~~~~p~~~aaa~-~al~~l~~--~~~~~~~l~~~~~~l~~~L~  385 (483)
                      +++++++.++....+                  +.|..+.+++.+.++. ++++.+.+  .+++.++.+++.+++.+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  322 (420)
T 1t3i_A          243 GKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG  322 (420)
T ss_dssp             ECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877543221                  1132233444444444 47777654  25678889999999999999


Q ss_pred             cCCCceeecCC-----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccC
Q 011567          386 DIHGLSIASNP-----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSA  457 (483)
Q Consensus       386 ~~~~~~i~~~~-----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~  457 (483)
                      +++++++..+.     .++++.+.++..      +   ..++.+. |.++||.+.+...+..+   ....+..+|++++.
T Consensus       323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~  392 (420)
T 1t3i_A          323 QIPQLRLYGPNPKHGDRAALASFNVAGL------H---ASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYF  392 (420)
T ss_dssp             TCTTEEEESCCGGGSCBCSEEEEEETTB------C---HHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCT
T ss_pred             hCCCeEEeCCCccccccCCEEEEEECCC------C---HHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeEEEecCC
Confidence            88788877553     377888877421      1   2245554 55679999876422110   00013459999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+|++|+++++++|+++++++
T Consensus       393 ~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          393 YNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHh
Confidence            899999999999999998765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.97  E-value=2.8e-30  Score=261.55  Aligned_cols=352  Identities=12%  Similarity=0.058  Sum_probs=251.0

Q ss_pred             ccccCCCCeEE-ECCe-------eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567           95 VLESAAGPHTI-ISGK-------EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF  166 (483)
Q Consensus        95 ~i~~~~g~~~~-~~G~-------~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~  166 (483)
                      +..+++|.++| .+|+       +++||.++. .++..+|.+.+++.+++++...       .|+..  ..++++.++++
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~-------~y~~~--~~~l~~~la~~   78 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD-MEFKNPPELIEGLKKYLDETVL-------GYTGP--TEEYKKTVKKW   78 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCC-------SSBCC--CHHHHHHHHHH
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecC-CCCCCCHHHHHHHHHHHhcCCC-------CCCCC--cHHHHHHHHHH
Confidence            34578999999 6774       799998874 4555679999999999875211       12221  45566666665


Q ss_pred             ----hC----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHH
Q 011567          167 ----LG----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRN  230 (483)
Q Consensus       167 ----~g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~  230 (483)
                          +|    .++.++.++|++|+..++++++++||.|+++.+.|.++...+...|.+++.++.        .|+++|++
T Consensus        79 l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~  158 (399)
T 1c7n_A           79 MKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEK  158 (399)
T ss_dssp             HHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHH
T ss_pred             HHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHH
Confidence                46    235666688889999999999999999999999999998888888988887765        36788887


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--C
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--D  305 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~  305 (483)
                      .+++.         ++++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+.+  .
T Consensus       159 ~l~~~---------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~  227 (399)
T 1c7n_A          159 LSKDK---------NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP--GYEHTVFQSIDEQLA  227 (399)
T ss_dssp             HHTCT---------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT--TCCCCCGGGSCHHHH
T ss_pred             HhccC---------CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCcccHHHcCcccc
Confidence            77521         2567777888889999999   999999999999999999999976543  332222222221  2


Q ss_pred             ceeEEEccccccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAIL  380 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l  380 (483)
                      +.+++++|++|++|..|   ||++++ +++++.++.....+.++ +.+++.++++.++++... ..++..++++++.+++
T Consensus       228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  306 (399)
T 1c7n_A          228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIV  306 (399)
T ss_dssp             TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34788899999998555   898886 66888776543333332 347777777777876422 1245677888899999


Q ss_pred             HHhhcc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          381 RTGLSD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       381 ~~~L~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .+.|++ ++++.+..+..+.++++.++.. +   .+   ..++.+.+++++||.+.+...+...   .+..+||+++.  
T Consensus       307 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~~--  374 (399)
T 1c7n_A          307 KDFFEVNHPEIKAPLIEGTYLQWIDFRAL-K---MD---HKAMEEFMIHKAQIFFDEGYIFGDG---GIGFERINLAA--  374 (399)
T ss_dssp             HHHHHHHCTTSBCCCCSBSSEEEEECGGG-C---CC---HHHHHHHHHHTTCCCCEEGGGGCGG---GTTEEEEECCS--
T ss_pred             HHHHHhhCCCCeEecCCceEEEEEEcccC-C---CC---HHHHHHHHHHhCCEEEeCccccCCC---CCCeEEEEecc--
Confidence            999987 7788776544455556777431 0   01   2356776655679999876543210   12459999975  


Q ss_pred             CHHHHHHHHHHHHHHHHHHHh
Q 011567          460 SEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       460 t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ++++++++++.|+++++++.+
T Consensus       375 ~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          375 PSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999987643

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=1.4e-29  Score=254.48  Aligned_cols=332  Identities=12%  Similarity=0.111  Sum_probs=240.6

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CCC-----CEEEecc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GTP-----DSILYSY  177 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~e-----~~i~~~s  177 (483)
                      +|+++|||+++.+ .+..+|.+.+++.+++++...      ..|+......++++.+++++    |.+     +.++.++
T Consensus        23 ~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g   95 (376)
T 2dou_A           23 RGVGLIDLSIGST-DLPPPEAPLKALAEALNDPTT------YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG   95 (376)
T ss_dssp             TTCCCEECSSCCC-CCCCCHHHHHHHHHHTTCGGG------SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred             cCCCEEeccCCCC-CCCCCHHHHHHHHHHHhCCCc------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence            4778999999843 343579999999998865211      13444456778888888887    753     4556677


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      |++++..++++++++||.|+++.+.|.++...++..|.+++.++.     .|+++|++.++.          ++++|+++
T Consensus        96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~l~  165 (376)
T 2dou_A           96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR----------EAKVLLLN  165 (376)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH----------HEEEEEEC
T ss_pred             cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc----------CceEEEEC
Confidence            789999999999999999999999998988888888999888875     367888887742          25677777


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      .+++++|.+.|   +++|+++|++||+++|+||+|+.+.++.....+....+.  .+.+++++|++|++|..|   ||++
T Consensus       166 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~  243 (376)
T 2dou_A          166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGA--KERVVELFSLSKSYNLAGFRLGFAL  243 (376)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTG--GGTEEEEEEHHHHHTCGGGCCEEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCC--CCcEEEEecchhhcCChhheeEEEe
Confidence            77888999988   788999999999999999999976653212223332222  234788899999998555   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      +++++++.++.....+.+  +.++..++++.++++..+ ..++.+++++++.+++.+.|+++  +.+..+..+.++++.+
T Consensus       244 ~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~  319 (376)
T 2dou_A          244 GSEEALARLERVKGVIDF--NQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRL  319 (376)
T ss_dssp             ECHHHHHHHHHHHHHHCC--CSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEEC
T ss_pred             cCHHHHHHHHHHHHhccc--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEEC
Confidence            999998887654333333  346777777777776422 12356778888999999999875  6665443456777887


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      +...     +   ..++++.++++ ||.+.+...+...   .+..+|++++.  +++++++++++|++++
T Consensus       320 ~~~~-----~---~~~~~~~l~~~-gi~v~~g~~f~~~---~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          320 PEGV-----D---DLEFGLRLVER-GVALAPGRGFGPG---GKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             CTTC-----C---HHHHHHHHHHT-TEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             CCCC-----C---HHHHHHHHHHC-CEEEcCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            4311     1   23567766665 9999886543210   12459999874  8999999999998764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=5.6e-30  Score=258.73  Aligned_cols=328  Identities=17%  Similarity=0.204  Sum_probs=236.8

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEeccc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYG  178 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG  178 (483)
                      .|++++||.++.+ .+..+|.+.+++.+++++...+       |+..+...++++.+++++    |.    ++.+++++|
T Consensus        39 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~  110 (389)
T 1o4s_A           39 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVK-------YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA  110 (389)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCC-------CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred             cCCCEEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence            4678999998844 2334689999999998763221       222222355666666665    63    356677888


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+       |+++|++.+++          ++++|++
T Consensus       111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~  180 (389)
T 1o4s_A          111 KQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG----------KTKAVLI  180 (389)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT----------TEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc----------CceEEEE
Confidence            899999999999999999999999999999899999998888754       56666655532          2577788


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      +++++++|.+.|   +++|+++|++||+++|+||+|+.+.++.....+....+.  .+.|++++|++|++|..|   ||+
T Consensus       181 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~l  258 (389)
T 1o4s_A          181 NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG--FDRIVYINGFSKSHSMTGWRVGYL  258 (389)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS--STTEEEEEESTTTTTCGGGCCEEE
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCC--CCcEEEEeechhhcCCcccceEEE
Confidence            888889999988   999999999999999999999986653211122222111  345899999999998555   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      ++++++++.++.....+.+  +.+++.+.++.++++..  .+++.++++++.+++.+.|+++ |+++..+..+.++++.+
T Consensus       259 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  333 (389)
T 1o4s_A          259 ISSEKVATAVSKIQSHTTS--CINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKV  333 (389)
T ss_dssp             ECCHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEEC
T ss_pred             EeCHHHHHHHHHHhhhccc--CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeC
Confidence            9999988877654333333  34677776666666432  4567889999999999999887 87776544455677776


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      +  .     +   ..++.+.+++++||.+.+...+..     ++.+|++++  .++++++++++.|+++++
T Consensus       334 ~--~-----~---~~~l~~~l~~~~gi~v~~g~~f~~-----~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          334 R--G-----D---DVKFCERLLEEKKVALVPGSAFLK-----PGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             S--S-----C---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             C--C-----C---HHHHHHHHHHHCCEEEeCchhcCC-----CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            3  1     1   235677666456999987654321     245999988  399999999999988763

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=6.2e-29  Score=250.97  Aligned_cols=348  Identities=14%  Similarity=0.074  Sum_probs=234.1

Q ss_pred             cccCCCCeEE-ECCe-----eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHH-HHHHHHhhh-
Q 011567           96 LESAAGPHTI-ISGK-----EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLD-CEARIAKFL-  167 (483)
Q Consensus        96 i~~~~g~~~~-~~G~-----~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~-l~~~La~~~-  167 (483)
                      -.+++|+++| .+|+     ++|||.++.+ ++..+|.+.+++.+++++...       .|+..  ..+ +++.+++++ 
T Consensus         9 ~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~~~--~~~~lr~~la~~l~   78 (390)
T 1d2f_A            9 DRHGTWCTQWDYVADRFGTADLLPFTISDM-DFATAPCIIEALNQRLMHGVF-------GYSRW--KNDEFLAAIAHWFS   78 (390)
T ss_dssp             ---------------------CEECCSSSC-SSCCCHHHHHHHHHHHTTCCC-------CCCCS--CCHHHHHHHHHHHH
T ss_pred             cccCCCccchhhhccccCCCCeeEeeecCC-CCCCCHHHHHHHHHHHhCCCC-------CCCCC--ChHHHHHHHHHHHH
Confidence            4578899999 6886     7999988743 444679999999999875211       12211  334 666666654 


Q ss_pred             ---C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHH
Q 011567          168 ---G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTL  232 (483)
Q Consensus       168 ---g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l  232 (483)
                         |    .++.++.++|++++..++++++++||.|+++.+.|.++...+...|.+++.++.        .|+++|++.+
T Consensus        79 ~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l  158 (390)
T 1d2f_A           79 TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVL  158 (390)
T ss_dssp             HHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHH
T ss_pred             HhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHh
Confidence               5    235566677789999999999999999999999998988888888988887764        4788888877


Q ss_pred             HHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ++.         ++++|++..+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+.++-.|.
T Consensus       159 ~~~---------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~d~  227 (390)
T 1d2f_A          159 AKP---------ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG--EQPHIPWSNVARGDWAL  227 (390)
T ss_dssp             TST---------TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS--SSCCCCGGGTCCSSEEE
T ss_pred             ccC---------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcCHHHcchhhHhh
Confidence            431         2566666677888999988   899999999999999999999976543  33333333343221266


Q ss_pred             EEccccccccCCC---ceeec-cHHHHHHHHhcCC-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHh
Q 011567          310 VTAAMGHALATEG---GFCTG-SARVVDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTG  383 (483)
Q Consensus       310 ~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~  383 (483)
                       ++|+||++|..|   ||+++ ++++++.++.... .+.|+ +.+++.++++.++++..++ .++.+++++++.+++.+.
T Consensus       228 -~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  305 (390)
T 1d2f_A          228 -LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADK  305 (390)
T ss_dssp             -EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccC-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence             789999998555   88887 4788877655433 23332 3477777777777774221 235677888899999999


Q ss_pred             hcc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHH
Q 011567          384 LSD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA  462 (483)
Q Consensus       384 L~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~e  462 (483)
                      |++ ++++.+..+..+.++++.++...    .+   ..++.+.+++++||.+.+...+..   ..+..+||+++.  +++
T Consensus       306 L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~~Ris~~~--~~~  373 (390)
T 1d2f_A          306 MNAAFPELNWQIPQSTYLAWLDLRPLN----ID---DNALQKALIEQEKVAIMPGYTYGE---EGRGFVRLNAGC--PRS  373 (390)
T ss_dssp             HHHHCSSCCCCCCSBCSEEEEECGGGC----CC---HHHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECCS--CHH
T ss_pred             HHhhCCCCEEecCCccEEEEEEccccC----CC---HHHHHHHHHHHcCEEeeCccccCC---CCCCeEEEEecC--CHH
Confidence            987 67877664434455677774310    01   235677666467999988654321   012459999986  689


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011567          463 DLVKACESLKRISAVV  478 (483)
Q Consensus       463 di~~~~~~l~~~~~~~  478 (483)
                      +++++++.|++++++.
T Consensus       374 ~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          374 KLEKGVAGLINAIRAV  389 (390)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.97  E-value=1.7e-29  Score=258.42  Aligned_cols=342  Identities=13%  Similarity=0.124  Sum_probs=249.2

Q ss_pred             CCeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCCEEEec
Q 011567          107 SGKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSILYS  176 (483)
Q Consensus       107 ~G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~~i~~~  176 (483)
                      +||++|||..+++.   .+..+|.+.+++.+++++....      .|+......++++.++++++       .++.++++
T Consensus        52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~  125 (427)
T 3dyd_A           52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS  125 (427)
T ss_dssp             TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred             CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence            57899999998653   2446799999999999874221      23333345789999999987       34667778


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      +|++|+..+++++.++||.|+++.+.|..+...+...|.+++.++.+       |+++|++.+++          .+++|
T Consensus       126 g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v  195 (427)
T 3dyd_A          126 GCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE----------KTACL  195 (427)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT----------TEEEE
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc----------CCCEE
Confidence            88999999999999999999999999999888899999988887653       56666655532          25667


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      ++..+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+..+...++++|+||+++..|   |
T Consensus       196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~--g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG  273 (427)
T 3dyd_A          196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS--DCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLG  273 (427)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCS--SCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCE
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccC--CCcCccHHHhCCCCcEEEEeeccccCCCcCcceE
Confidence            77777889999999   999999999999999999999875543  333322222222223577899999987666   8


Q ss_pred             eeecc-------HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          324 FCTGS-------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       324 ~i~~~-------~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      |++++       +++++.+...... .  .+.+++.++++.++++...  ...+..++++++.+++.+.|++++++.+..
T Consensus       274 ~~~~~~~~~~~~~~i~~~l~~~~~~-~--~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  350 (427)
T 3dyd_A          274 WILIHDRRDIFGNEIRDGLVKLSQR-I--LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR  350 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC
T ss_pred             EEEecCcchhhHHHHHHHHHHHHhc-c--CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence            88876       4677665443211 2  2457888888888887422  224578888899999999999888888766


Q ss_pred             CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +..+.++++.+......   +.....+++..+++++||++.++..+..     +..+||++.  +++++|++++++|+++
T Consensus       351 p~~g~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~  420 (427)
T 3dyd_A          351 PSGAMYLMVGIEMEHFP---EFENDVEFTERLVAEQSVHCLPATCFEY-----PNFIRVVIT--VPEVMMLEACSRIQEF  420 (427)
T ss_dssp             CSBTTEEEEEECGGGCT---TCSSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEESC--SCHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEEecCHhhcC---CCCCHHHHHHHHHHHCCEEEECCcccCC-----CCeEEEEEC--CCHHHHHHHHHHHHHH
Confidence            66778888877421100   0001235677776667999998754432     345999975  7999999999999999


Q ss_pred             HHHHH
Q 011567          475 SAVVL  479 (483)
Q Consensus       475 ~~~~~  479 (483)
                      +++..
T Consensus       421 l~~~~  425 (427)
T 3dyd_A          421 CEQHY  425 (427)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88753

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.97  E-value=1e-29  Score=256.87  Aligned_cols=333  Identities=15%  Similarity=0.110  Sum_probs=234.3

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEEecc
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSY  177 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~s  177 (483)
                      .+|+++|||.++.. .+..+|.+.+++.+++++...+       |+......++++.+++++    |    .++.+++++
T Consensus        28 ~~g~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g   99 (391)
T 3h14_A           28 EAGRRIIHMEVGQP-GTGAPRGAVEALAKSLETDALG-------YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG   99 (391)
T ss_dssp             HTTCCCEECCCSSC-SSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred             hcCCCeEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence            36889999999842 3334788999999988762221       221111345556666654    3    246677788


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      |++|+..+++++.++||.|+++.+.|.++...++..|.+++.++.+       |+++|++.      +       +++|+
T Consensus       100 ~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------~-------~~~v~  166 (391)
T 3h14_A          100 SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------D-------LAGLM  166 (391)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------C-------CSEEE
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------C-------CeEEE
Confidence            8999999999999999999999999999999999999999888765       55555433      1       56777


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ce
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      ++.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++.......+   .  .+.+++++|++|++|..|   ||
T Consensus       167 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~--~~~~i~~~s~sK~~g~~G~r~G~  241 (391)
T 3h14_A          167 VASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE---L--TDECYVINSFSKYFSMTGWRVGW  241 (391)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG---T--CSSSEEEEESSSTTCCTTSCCEE
T ss_pred             ECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh---c--CCCEEEEEechhccCCccceeEE
Confidence            7788899999998   89999999999999999999987665433222222   2  233788899999998656   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFL  403 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l  403 (483)
                      +++++++++.++.....+.+  +.++..++++.++++..+...+.+++++++.+++.+.|+++ ++.. ..+..+.++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~  318 (391)
T 3h14_A          242 MVVPEDQVRVVERIAQNMFI--CAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYA  318 (391)
T ss_dssp             EECCGGGHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEE
T ss_pred             EEeCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEE
Confidence            99999998887654333333  44677777777777622222457788888899999999876 4443 33334567777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+.....       ...++++.++++.||.+.++..+...  ..+..+|++++.  +++++++++++|++++++.
T Consensus       319 ~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~--~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          319 DVSDLTD-------DSRAFAAEILEKAGVAVTPGLDFDPE--RGAGTLRFSYAR--ATADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             ECTTTCS-------CHHHHHHHHHHHHCEECEEGGGTCTT--TGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC
T ss_pred             ecCccCC-------CHHHHHHHHHHHCCEEEcCchhhCCC--CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence            7743111       12356777676669999987544321  012359999876  8999999999999998764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.97  E-value=1.7e-29  Score=259.91  Aligned_cols=348  Identities=15%  Similarity=0.206  Sum_probs=246.1

Q ss_pred             CeeEEEeecCC--CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEeccc
Q 011567          108 GKEVVNFASAN--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILYSYG  178 (483)
Q Consensus       108 G~~~id~~s~~--~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~~sG  178 (483)
                      ++++|||+++.  ..++ +++.+.+++.+++++.+..    ...|+......+|++.|++++    |.   ++.+++++|
T Consensus        75 ~~~~i~l~~g~p~~~~~-p~~~v~~a~~~~l~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~  149 (448)
T 3aow_A           75 TSDIISLAGGLPNPKTF-PKEIIRDILVEIMEKYADK----ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS  149 (448)
T ss_dssp             TSSSEECCCCCCCGGGS-CHHHHHHHHHHHHHHSHHH----HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred             CCCcEeCCCCCCCchhC-CHHHHHHHHHHHHHhhhHH----HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence            45689999873  3334 6788999999988763200    001222223456777777777    85   345555777


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEec
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVEA  253 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e~  253 (483)
                      ++++..++++++++||.|+++.+.|.++...+...|.+++.++.+    |+++|++.++....+   . .++++| ++..
T Consensus       150 ~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~---~-~~~k~v~~~~~  225 (448)
T 3aow_A          150 QQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ---G-KKVKVVYTVPT  225 (448)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT---T-CCEEEEEECCS
T ss_pred             HHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc---C-CCCeEEEECCC
Confidence            899999999999999999999999999999999999998888753    788999888621100   0 135676 4566


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      .++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+++.+.+++++|+||+++ .|   ||+++
T Consensus       226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~--g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~  302 (448)
T 3aow_A          226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYS--GNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVG  302 (448)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCS--SCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEE
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCC--CCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEe
Confidence            7788999988   679999999999999999999987653  333222233333456888999999998 55   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEE
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVF  402 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l---~~~~~~~~~l~~~~~~l~~~L~~-~~-~~~i~~~~~~~i~~  402 (483)
                      ++++++.++.....+.++  .+++..+++.++|+..   +...++++.++++.+++.+.|++ ++ ++.+..+..+.+++
T Consensus       303 ~~~l~~~l~~~~~~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~  380 (448)
T 3aow_A          303 DPGIIRKMEIAKQSTDLC--TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW  380 (448)
T ss_dssp             CHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEE
T ss_pred             CHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEE
Confidence            999998876543333333  3677777777777642   11234677777888999999976 45 67776555678888


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +.++...     +   ..+++..++++ ||.+.++..+.... ..+..+|++++. .|+++|++++++|++++++.++
T Consensus       381 v~~~~~~-----~---~~~l~~~l~~~-gV~v~pg~~f~~~~-~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          381 VTLPDGI-----D---SKKMLERAIKK-GVAYVPGEAFYAHR-DVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             EECSTTC-----C---HHHHHHHHHHT-TEECEEGGGGSTTC-CCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEcCCCC-----C---HHHHHHHHHHC-CcEEEcchhhcCCC-CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            8885311     1   23567776665 99998875332110 012459999876 4899999999999999988764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=6.6e-30  Score=259.94  Aligned_cols=336  Identities=13%  Similarity=0.121  Sum_probs=238.8

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------CCEEEeccc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------PDSILYSYG  178 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------e~~i~~~sG  178 (483)
                      +|++++||.++.+ ++..+|.+.+++ +++++...       .|+..+...++++.++++++.        ++.+++++|
T Consensus        41 ~g~~~i~l~~~~~-~~~~~~~v~~a~-~~l~~~~~-------~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~  111 (409)
T 2gb3_A           41 RGVRIHHLNIGQP-DLKTPEVFFERI-YENKPEVV-------YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG  111 (409)
T ss_dssp             TTCEEEECSSCCC-CSCCCTHHHHHH-HHTCCSSC-------CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred             cCCCEEeccCCCC-CCCCCHHHHHHH-HHHhcCCC-------CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence            5788999999855 444568999999 88865211       122222235666777766531        467777889


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC------HHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND------MDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++|+..+++++.++||.|+++.+.|.++...++..|.+++.++.++      +++|++.+++          ++++|+++
T Consensus       112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~----------~~~~v~~~  181 (409)
T 2gb3_A          112 SEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINE----------RTKGIVLS  181 (409)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCT----------TEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCc----------CCeEEEEC
Confidence            9999999999999999999999999999999999999998888653      4445444421          26777888


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      ++++++|.+.|   +++|+++|++||+++|+||+|+.+.++....++  ..++  .+.|++++|++|++|..|   ||++
T Consensus       182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~  257 (409)
T 2gb3_A          182 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIE--SDKVVVIDSVSKKFSACGARVGCLI  257 (409)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSC--CTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccC--CCCEEEEecchhccCCccceEEEEE
Confidence            88888999876   899999999999999999999986653211121  1122  245999999999998555   9999


Q ss_pred             ccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEE
Q 011567          327 GSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFL  403 (483)
Q Consensus       327 ~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l  403 (483)
                      +++ ++++.++.....+.   +.+++.++++.++++... ..+++.++++++.+++.+.|+++ |+.+ ..+..+.++++
T Consensus       258 ~~~~~l~~~l~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  333 (409)
T 2gb3_A          258 TRNEELISHAMKLAQGRL---APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITA  333 (409)
T ss_dssp             CSCHHHHHHHHHHHHHSC---CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEE
T ss_pred             ECcHHHHHHHHHHHhccC---CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEE
Confidence            988 88887765433322   457777777777774321 12356788888999999999887 8777 54444666777


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHh-----CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKE-----DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~-----~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+...      +   ..++.+.++++     .||.+.+...........+..+|++++  +|++++++++++|+++++++
T Consensus       334 ~~~~~------~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          334 ELPVE------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             ECSSS------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCC------C---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence            76410      1   23566665554     399998764322100011345999988  89999999999999999876


Q ss_pred             Hh
Q 011567          479 LR  480 (483)
Q Consensus       479 ~~  480 (483)
                      ..
T Consensus       403 ~~  404 (409)
T 2gb3_A          403 CS  404 (409)
T ss_dssp             HC
T ss_pred             hh
Confidence            54

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.97  E-value=3.1e-29  Score=253.01  Aligned_cols=333  Identities=15%  Similarity=0.192  Sum_probs=238.3

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CC-EEEecccHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PD-SILYSYGLS  180 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~-~i~~~sG~~  180 (483)
                      +++||.++.. .+..+|.+.+++.+++++...+       |+......++++.+++++    |.    ++ .+++++|++
T Consensus        27 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~   98 (389)
T 1gd9_A           27 DVISLGIGEP-DFDTPQHIKEYAKEALDKGLTH-------YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ   98 (389)
T ss_dssp             SCEECCCCSC-SSCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTH
T ss_pred             CeEecCCCCC-CCCCCHHHHHHHHHHHhCCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHH
Confidence            5799988743 3335789999999999763211       222122345566666655    72    45 777788999


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      ++..++++++++||.|+++.+.|.++...++..|.+++.++.+       |+++|++.+++          ++++|++++
T Consensus        99 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~  168 (389)
T 1gd9_A           99 AFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----------KTRALIINS  168 (389)
T ss_dssp             HHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----------TEEEEEEES
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc----------CceEEEEEC
Confidence            9999999999999999999999999888888889988877642       56777766532          256777788


Q ss_pred             ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      +++++|.+.|   +++|+++|++||+++|+||+|+.+.++.. ...+....+.  .+.|++++|++|++|..|   ||++
T Consensus       169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~  246 (389)
T 1gd9_A          169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM--FERTITVNGFSKTFAMTGWRLGFVA  246 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTTCGGGCCEEEE
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCC--CCCEEEEecChhhcCCcccceEEEE
Confidence            8888999986   89999999999999999999998765421 1222222121  356899999999998666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL  403 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l  403 (483)
                      +++++++.++.....+.+  +.++..++++.++++....   .++++++++++.+++.+.|+++ |+++..+..+.++++
T Consensus       247 ~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~  323 (389)
T 1gd9_A          247 APSWIIERMVKFQMYNAT--CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFP  323 (389)
T ss_dssp             CCHHHHHHHHHHHTTTTC--SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECC
T ss_pred             ECHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEE
Confidence            999998887654443333  3467777777777764332   2456788889999999999887 877765444556666


Q ss_pred             EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .++.. +      ....++++.+++++||.+.+...+...   .+..+|++++.  +++++++++++|++++++
T Consensus       324 ~~~~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          324 RIRDT-G------LTSKKFSELMLKEARVAVVPGSAFGKA---GEGYVRISYAT--AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             BCGGG-T------CCHHHHHHHHHHHTCEECEEGGGGCGG---GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             eccCC-C------CCHHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            66320 0      012356776664679999886543210   12459999874  999999999999998865

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=1.2e-29  Score=259.28  Aligned_cols=351  Identities=16%  Similarity=0.196  Sum_probs=247.2

Q ss_pred             CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-----CCEEEec
Q 011567          108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYS  176 (483)
Q Consensus       108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-----e~~i~~~  176 (483)
                      ++++|||+++  ++.++ +++.+.+++.+++++.+...    ..|+......++++.+++++    |.     ++.++.+
T Consensus        42 ~~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~  116 (425)
T 1vp4_A           42 DKDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHYT----LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV  116 (425)
T ss_dssp             STTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHHH----TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred             CCCceeCCCCCCCcccC-CHHHHHHHHHHHHhhcchhh----cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence            3568999887  45566 67899999999987632000    01222222356666666666    73     2455557


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----CCHHHHHHHHHHhhhhhhhccCccEEE-EE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----NDMDSLRNTLERVTADNKRAKKLRRYI-VV  251 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~d~~~Le~~l~~~~~~~~~~~~~~~~i-v~  251 (483)
                      +|++++..++++++++||.|+++.+.|.++...+...|.+++.++.    .|+++|++.+++.... . ...++++| ++
T Consensus       117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~-~-~~~~~~~v~~~  194 (425)
T 1vp4_A          117 GSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN-G-KIKQVKFIYVV  194 (425)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT-T-CGGGEEEEEEE
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc-c-cCCCceEEEEC
Confidence            7789999999999999999999999999998889888998887775    3788999888653110 0 00125666 56


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      +.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |.+......+.+.+.+++++|++|++| .|   ||+
T Consensus       195 ~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~  271 (425)
T 1vp4_A          195 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYE--GETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMV  271 (425)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCS--SCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEE
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCC--CCCCcCHHHhCCCCCEEEEeccccccc-cccceEEE
Confidence            778888999988   688999999999999999999986653  222211111222345788999999999 66   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHhhccC-C---CceeecCCCC
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSDI-H---GLSIASNPES  398 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l---~~~~~~~~~l~~~~~~l~~~L~~~-~---~~~i~~~~~~  398 (483)
                      ++++++++.++.....+.++  .+++.++++.++++..   +...+.+++++++.+++.+.|++. +   ++.+..+..+
T Consensus       272 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g  349 (425)
T 1vp4_A          272 AGSKEFIRKIVQAKQSADLC--SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGG  349 (425)
T ss_dssp             ECCHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBS
T ss_pred             eeCHHHHHHHHHHhhhhcCC--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCcc
Confidence            99999988876543343343  3778888888888763   223467788888999999999763 4   5777655567


Q ss_pred             CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          399 PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       399 ~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +++++.++....        ..++++.++++ ||.+.+...+.... ..+..+||+++.. |++|+++++++|+++++++
T Consensus       350 ~~~~~~~~~~~~--------~~~l~~~l~~~-gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          350 LFIWLTLPEGFD--------TWEMFEYAKRK-KVFYVPGRVFKVYD-EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY  418 (425)
T ss_dssp             SEEEEECCTTCC--------TTTTHHHHHHH-TEECEEGGGGCTTC-CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCC--------HHHHHHHHHHC-CCEEECchhhcCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence            788888853111        12456666666 99998865332110 0124599999874 9999999999999999887


Q ss_pred             Hhc
Q 011567          479 LRD  481 (483)
Q Consensus       479 ~~~  481 (483)
                      .++
T Consensus       419 ~~~  421 (425)
T 1vp4_A          419 GKE  421 (425)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            554

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=6.6e-29  Score=248.22  Aligned_cols=319  Identities=12%  Similarity=0.086  Sum_probs=242.4

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~  184 (483)
                      ++++|||+++ +.++  .+|++.+++.++++.+.        .| ..+...++++++++++|.  ++.+++++|++++..
T Consensus        31 ~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y-~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~   99 (363)
T 3ffh_A           31 LTKITKLSSNENPLG--TSKKVAAIQANSSVETE--------IY-PDGWASSLRKEVADFYQLEEEELIFTAGVDELIEL   99 (363)
T ss_dssp             CSCCEECSSCSCTTC--CCHHHHHHHHTCBSCCC--------BC-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred             CCceEEccCCCCCCC--CCHHHHHHHHHHHHHhh--------cC-CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHH
Confidence            4689999998 5544  56899998887665321        11 123457899999999995  456777888999999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++++.++||.|+++.+.|.++...++..|.+++.++.+     |+++|++.+++          .+++|+++++++++|
T Consensus       100 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~p~nptG  169 (363)
T 3ffh_A          100 LTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE----------KTTIVWICNPNNPTG  169 (363)
T ss_dssp             HHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT----------TEEEEEEESSCTTTC
T ss_pred             HHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc----------CCCEEEEeCCCCCcC
Confidence            999999999999999999999999999999999998877     78888776642          267888888899999


Q ss_pred             CccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          260 QIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      .+.|++++.++|+.+  |+++|+||+|+.+..+ ...+.....+.  .+.+++++|++|++|..|   ||+++++++++.
T Consensus       170 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~  246 (363)
T 3ffh_A          170 NYIELADIQAFLDRVPSDVLVVLDEAYIEYVTP-QPEKHEKLVRT--YKNLIITRTFSKIYGLASARVGYGIADKEIIRQ  246 (363)
T ss_dssp             CCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSS-CCCCCGGGGGT--CTTEEEEEESSSTTCCSSCCCEEEEECHHHHHH
T ss_pred             CCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCc-cccCHHHHhhc--CCCEEEEeechhhhcCchhceeeeecCHHHHHH
Confidence            999999999999888  9999999999865442 11222222222  234688899999998666   999999999998


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      ++.....    .+.++..++++.++++..+...+..++++++.+++.+.|++.+++.+.. +.++++++.++.       
T Consensus       247 l~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~~~-------  314 (363)
T 3ffh_A          247 LNIVRPP----FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVLIDLGI-------  314 (363)
T ss_dssp             HHHTCCS----CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEEEECSS-------
T ss_pred             HHHhCCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEEEECCC-------
Confidence            8765443    2468888888888886433234577888899999999998866888764 467888887742       


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         ...++.+.+. ++||.+.++..+..     +..+|++++   |++|+++++++|+++
T Consensus       315 ---~~~~~~~~l~-~~gi~v~~g~~~~~-----~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          315 ---EAGTIFSYLE-KNGYITRSGAALGF-----PTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             ---CHHHHHHHHH-HTTEECEETTTTTC-----TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHH-HCCeEEEeCccCCC-----CCeEEEECC---CHHHHHHHHHHHHHh
Confidence               1235666655 46999988654332     345999986   999999999999875

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.97  E-value=1.1e-29  Score=257.16  Aligned_cols=343  Identities=14%  Similarity=0.171  Sum_probs=244.7

Q ss_pred             CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      ++++|||+++  ++.++ .++.+.+++.+++++.+...    ..|+......++++.+++++|.+  +.++.++|++++.
T Consensus        31 ~~~~i~l~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~  105 (397)
T 2zyj_A           31 RPGILSFAGGLPAPELF-PKEEAAEAAARILREKGEVA----LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALD  105 (397)
T ss_dssp             STTCEEESSCCCCGGGC-CHHHHHHHHHHHHHHHHHHH----TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             CCCceecCCCCCCchhC-CHHHHHHHHHHHHHhcchhh----hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHH
Confidence            4568999887  45566 67899999999987632100    02222233578999999999853  4555577788999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e~v~~~~  258 (483)
                      .++++++++||.|+++.+.|.++...+...|.+++.++.+    |+++|++.+++.         ++++| +++.+++++
T Consensus       106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~~npt  176 (397)
T 2zyj_A          106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRE---------RPRFLYLIPSFQNPT  176 (397)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHC---------CCSCEEECCBSCTTT
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhc---------CCeEEEECCCCcCCC
Confidence            9999999999999999999989888888889988877653    788888888642         13454 567788899


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC---ceeEEEccccccccCCC---ceeeccH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD---KIDIVTAAMGHALATEG---GFCTGSA  329 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~---~~Di~~~s~~K~lg~~G---G~i~~~~  329 (483)
                      |.+.|   +++|+++|++||+++|+||+|+.+.++  |........+..+   +.+++++|++|++| .|   ||+++++
T Consensus       177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~  253 (397)
T 2zyj_A          177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFG--EARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHP  253 (397)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCS--SCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCH
T ss_pred             CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCC--CCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCH
Confidence            99988   569999999999999999999986553  2322111111112   33588899999998 55   9999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEEEEe
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVFLIL  405 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~-~~-~~~i~~~~~~~i~~l~l  405 (483)
                      ++++.++.....+.++.  +++.++++.++++..  +..++..++++++.+++.+.|++ ++ |+.+..+..+.++++.+
T Consensus       254 ~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~  331 (397)
T 2zyj_A          254 EALQKLVQAKQGADLHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL  331 (397)
T ss_dssp             HHHHHHHHHHHHHHSSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEEC
T ss_pred             HHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEc
Confidence            99888765443444443  677777777777532  11234677778888889998876 45 57776555678888887


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +...     +   ..++++.++++ ||.+.++....... ..+..+||+++.. |++|+++++++|++++++++.
T Consensus       332 ~~~~-----~---~~~~~~~l~~~-gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  395 (397)
T 2zyj_A          332 PKGL-----S---AEGLFRRALEE-NVAFVPGGPFFANG-GGENTLRLSYATL-DREGIAEGVRRLGRALKGLLA  395 (397)
T ss_dssp             STTC-----C---HHHHHHHHHHT-TEEEEESGGGCTTS-CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-----C---HHHHHHHHHHC-CCEEechHHhcCCC-CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            5311     1   23567766655 99998865332110 0134599999874 999999999999999987753

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=2.1e-29  Score=253.55  Aligned_cols=328  Identities=18%  Similarity=0.189  Sum_probs=241.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP  187 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~  187 (483)
                      .++||.++.+ .+..+|.+.+++.+++++ ..       .|+......++++.++++++.+  +.+++++|++++..+++
T Consensus        26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~-------~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~   96 (381)
T 1v2d_A           26 GAVNLGQGFP-SNPPPPFLLEAVRRALGR-QD-------QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ   96 (381)
T ss_dssp             TCEECCCCSC-SSCCCHHHHHHHHHHTTT-SC-------SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CeEEecCCCC-CCCCCHHHHHHHHHHHHH-hc-------CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHH
Confidence            4799988743 333679999999998876 22       2333334578999999999864  66777888999999999


Q ss_pred             hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++.++||.|++..+.|.++...++..|.+++.++.+        |+++|++.++.          ++++|+++++++++|
T Consensus        97 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~~~nptG  166 (381)
T 1v2d_A           97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP----------RTRALLLNTPMNPTG  166 (381)
T ss_dssp             HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT----------TEEEEEEESSCTTTC
T ss_pred             HhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc----------CCEEEEECCCCCCCC
Confidence            999999999999999988888888889988877653        67777665521          267788888889999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD  333 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~  333 (483)
                      .+.|   +++|+++|++||+++|+||+|+.+.+|..+..+.+.    ..++|++++|++|++|..|   ||+++++++++
T Consensus       167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~----~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~  242 (381)
T 1v2d_A          167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF----APERTFTVGSAGKRLEATGYRVGWIVGPKEFMP  242 (381)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH----CTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred             CccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh----cCCCEEEEeechhhcCCcccceEEEEeCHHHHH
Confidence            9987   899999999999999999999987665444344332    1345899999999998555   99999998888


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHH--hc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVL--EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      .++.......+  +.++..++++.++++..  ++ .++++++++++.+++.+.|++. |+++..+..+.++++.++..  
T Consensus       243 ~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--  317 (381)
T 1v2d_A          243 RLAGMRQWTSF--SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW--  317 (381)
T ss_dssp             HHHHHHHHHTS--SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC--
T ss_pred             HHHHHHhhccc--CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH--
Confidence            77643222223  34677777777888755  22 2467888999999999999885 88877654567777777421  


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                          +      +. .+++++||.+.+...+.... ..+..+|++++.  |++++++++++|++++++..
T Consensus       318 ----~------~~-~~l~~~gi~v~~g~~~~~~~-~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r  372 (381)
T 1v2d_A          318 ----D------AF-RLVEEARVALIPASAFYLED-PPKDLFRFAFCK--TEEELHLALERLGRVVNSPR  372 (381)
T ss_dssp             ----C------HH-HHHHHTCEECEEGGGGCSSS-CCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred             ----h------HH-HHHHhCCEEEecchHhCCCC-CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence                1      23 34666799998865432110 012459999876  99999999999999887653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=1.6e-29  Score=256.89  Aligned_cols=338  Identities=15%  Similarity=0.133  Sum_probs=239.5

Q ss_pred             CCeeEEEeecCCCC--CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C--C--CCEEEec
Q 011567          107 SGKEVVNFASANYL--GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G--T--PDSILYS  176 (483)
Q Consensus       107 ~G~~~id~~s~~~l--G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g--~--e~~i~~~  176 (483)
                      +|++++||.++.+.  .+..+|.+.+++.+++++...       .|+......++++.+++++    |  .  ++.++++
T Consensus        36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~  108 (406)
T 1xi9_A           36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN-------YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA  108 (406)
T ss_dssp             TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC-------SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC-------CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence            57889999998552  444568999999999876321       1222222345666666665    3  2  4567778


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      +|++|+..++++++++||.|+++.+.|.++...+...|.+++.++.+       |+++|++.+++          ++++|
T Consensus       109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v  178 (406)
T 1xi9_A          109 AVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD----------RTKAI  178 (406)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT----------TEEEE
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc----------CceEE
Confidence            88999999999999999999999999999999888889988877643       67777766642          25677


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce-eEEEccccccccCCC---
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI-DIVTAAMGHALATEG---  322 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~-Di~~~s~~K~lg~~G---  322 (483)
                      +++++++++|.+.|   +++|+++|++||+++|+||+|+.+.++.... ....++   .+. |++++|++|++|..|   
T Consensus       179 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~-~~~~~~---~~~~~i~~~s~sK~~~~~G~r~  254 (406)
T 1xi9_A          179 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLT---KDVPVIVMNGLSKVYFATGWRL  254 (406)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHC---SSSCEEEEEESTTTTCCGGGCC
T ss_pred             EEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC-CHHHcC---CCceEEEEeccccccCCCccEE
Confidence            78888899999887   9999999999999999999999876532111 112222   344 789999999998555   


Q ss_pred             ceee--ccH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          323 GFCT--GSA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       323 G~i~--~~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                      ||++  +++    ++++.++...... +  +.+++.++++.++++...+ .++++++++++.+++.+.|++++++.+..+
T Consensus       255 G~~~~~~~~~~~~~l~~~l~~~~~~~-~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  331 (406)
T 1xi9_A          255 GYMYFVDPENKLSEVREAIDRLARIR-L--CPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP  331 (406)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHT-C--CSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred             EEEEEecCchhHHHHHHHHHHHHHhh-c--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence            8888  888    8888776432221 2  3466677777777753221 245678888999999999998778877644


Q ss_pred             CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ..+.++++.++...+   .+   ..++++.+++++||.+.+.......   .+..+||+++  ++++++++++++|++++
T Consensus       332 ~~~~~~~~~~~~~~~---~~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~lRis~~--~~~~~i~~~~~~l~~~l  400 (406)
T 1xi9_A          332 QGAFYIFPKIEVGPW---KN---DKEFVLDVLHNAHVLFVHGSGFGEY---GAGHFRAVFL--PPIEILEEAMDRFEKFM  400 (406)
T ss_dssp             CBSSEECCEECSCSC---SS---HHHHHHHHHHHHCEECEEGGGGCGG---GTTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEEecCccCC---CC---HHHHHHHHHHhCCEEEeCchhcCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence            345556666642101   01   2356776664569999876543210   1245999997  89999999999999998


Q ss_pred             HHHH
Q 011567          476 AVVL  479 (483)
Q Consensus       476 ~~~~  479 (483)
                      ++++
T Consensus       401 ~~~~  404 (406)
T 1xi9_A          401 KERL  404 (406)
T ss_dssp             HHC-
T ss_pred             HHHh
Confidence            7754

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.97  E-value=3.3e-29  Score=255.00  Aligned_cols=344  Identities=14%  Similarity=0.130  Sum_probs=236.6

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-----CCEEEec
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYS  176 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-----e~~i~~~  176 (483)
                      .+|+++|||+++.. .+..+|.+.+++.+++++.+..      .|+......++++.+++++    |.     ++.++++
T Consensus        34 ~~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~  106 (412)
T 2x5d_A           34 RRGEDIIDLSMGNP-DGPTPPHIVEKLCTVAQREDTH------GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTI  106 (412)
T ss_dssp             HTTCCCEECSSCCC-CSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred             hcCCCEEecCCCCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcC
Confidence            36788999999843 3336799999999888653221      1222222456777777776    73     3677778


Q ss_pred             ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC---H-HHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---M-DSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d---~-~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +|++|+..++++++++||.|++..+.|.++...+...|.+++.++.++   . -+++++.+....       ++++|++.
T Consensus       107 g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~l~  179 (412)
T 2x5d_A          107 GSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP-------KPRMMILG  179 (412)
T ss_dssp             CHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES-------CCSEEEEE
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc-------CceEEEEC
Confidence            889999999999999999999999999999888888899988887653   1 133433333222       24566666


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccc-cCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      .+++++|.+.|   +++|+++|++||+++|+||+|+.+.+ |.....+....+.  .+.|++++|++|++|..|   ||+
T Consensus       180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~  257 (412)
T 2x5d_A          180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA--KDIAVEFFTLSKSYNMAGWRIGFM  257 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG--GGTEEEEEECC-CCSCTTSCCEEE
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc--cCcEEEEecCccccCCcccceEEE
Confidence            67888999987   78999999999999999999998765 3222223222111  245899999999998656   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++++++++.++.......+  +.+++.++++.++++..++ .+++.++++++.+++.+.|+++ ++.+..+..+.++++.
T Consensus       258 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~  334 (412)
T 2x5d_A          258 VGNPELVSALARIKSYHDY--GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAK  334 (412)
T ss_dssp             EECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEE
T ss_pred             EcCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEE
Confidence            9999998887654322223  3467777777777764321 2457788888999999999886 7776644345677787


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++...+  .   ....++++.+++++||.+.+...+...   .+..+|++++.  ++++++++++.|+++++++
T Consensus       335 ~~~~~~--~---~~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          335 IPEPYA--H---LGSLEFAKKLLQDAKVSVSPGIGFGDY---GDDHVRFALIE--NRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             CCTTTG--G---GCHHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred             cCCccC--C---CCHHHHHHHHHHHCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence            742110  0   012357776666569999887543210   12459999986  8999999999999998764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.97  E-value=2.7e-30  Score=257.65  Aligned_cols=335  Identities=14%  Similarity=0.123  Sum_probs=239.1

Q ss_pred             eeEEE-eecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          109 KEVVN-FASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       109 ~~~id-~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      |+++| |.+++|||++.+|.+.+++.+++++++  .+..+..|+..+...+|+++|++++|.+..+++++|++|+..+++
T Consensus         3 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~   80 (357)
T 3lws_A            3 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVA--DEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALR   80 (357)
T ss_dssp             CHHHHHHHTCSEESSBSSCCBHHHHHHHHTTSC--TTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             chhhhHHHhhcccccCCCCCCHHHHHHHHHHhh--cccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHH
Confidence            45666 778899999999999999999998875  334455777777889999999999999989999999999999999


Q ss_pred             hhccCCc--EEEEcCCchhHHHh---HhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          188 CFCKKGD--LIVADEGVHWGIQN---GLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       188 ~~~~~gd--iI~~~~~~h~s~~~---g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      +++.++|  +|+++..+|.+...   .....|.+++.++..    |+++|++.     .       .+++|+++++++++
T Consensus        81 ~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~-----~-------~~~~v~~~~p~np~  148 (357)
T 3lws_A           81 IWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKAL-----P-------DIACLLLELPQREI  148 (357)
T ss_dssp             HHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTSCCCHHHHHTC-----C-------SCSEEEEESSBGGG
T ss_pred             HHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCCCcCHHHHhcC-----c-------CcceEEEEcccccC
Confidence            9988888  89999999887655   245568888877643    56666554     1       15678888888776


Q ss_pred             -CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccHHHHH
Q 011567          259 -GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVD  333 (483)
Q Consensus       259 -G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~~~  333 (483)
                       |.+.|   +++|+++|++||+++|+||+|.++..+..|+...+..    ...|+++.|++|++ |+.||++++++++++
T Consensus       149 ~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~  224 (357)
T 3lws_A          149 GGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----GLFDSIYISFYKGLGGIAGAILAGPAAFCQ  224 (357)
T ss_dssp             TSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH----TTSSEEEEESSSTTCCSSCEEEEECHHHHH
T ss_pred             CceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH----hcCCEEEEeccccCCCCceEEEEcCHHHHH
Confidence             88887   8999999999999999999987433322222222211    22377788999999 677899999999888


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCc
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~  412 (483)
                      .++.....+..+...+...++++.++++...+   ..++..++.+++.+.|++++++++. .++.++++++.++..    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~----  297 (357)
T 3lws_A          225 TARIWKRRYGGDLISLYPYIVSADYYYELRKD---RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQ----  297 (357)
T ss_dssp             HHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESC----
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCC----
Confidence            76532111111111123344455566665322   3445677888999999998899873 456788999888532    


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC---CCHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRIS  475 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~---~t~edi~~~~~~l~~~~  475 (483)
                        ......++.+.+ .++||.+.+...+..    ....+|+++...   .++++++++++.|++++
T Consensus       298 --~~~~~~~~~~~l-~~~Gi~v~~g~~~~~----~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          298 --AADISPKLEQVQ-EETGLGFVGYLVDKD----GYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             --HHHHHHHHHHHH-HHHCEESCSCCEECS----SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             --hHHHHHHHHHHH-HhcCeEEecccccCC----CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence              111234566654 455999987643220    012489988644   68999999999988764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=5.7e-29  Score=255.08  Aligned_cols=309  Identities=14%  Similarity=0.066  Sum_probs=222.2

Q ss_pred             HHHHHHHHHhhhC----------CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC-
Q 011567          156 HLDCEARIAKFLG----------TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN-  223 (483)
Q Consensus       156 ~~~l~~~La~~~g----------~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~-  223 (483)
                      ..+|++.|+++++          .++.+++++|++|+..++++++++||.|+++.+.|.++..++. ..|.+++.++++ 
T Consensus        88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~  167 (435)
T 3piu_A           88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTS  167 (435)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCG
T ss_pred             cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCC
Confidence            4788888888887          4567788999999999999999999999999999999988888 789999888875 


Q ss_pred             ------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567          224 ------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       224 ------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~  294 (483)
                            |+++|++.+++....    ..++++|+++++++++|.+.|   +++|+++|++||+++|+||+|+.+.++..+.
T Consensus       168 ~~~~~~d~~~l~~~l~~~~~~----~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~  243 (435)
T 3piu_A          168 SNGFQITETALEEAYQEAEKR----NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF  243 (435)
T ss_dssp             GGTSCCCHHHHHHHHHHHHHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred             ccCCcCCHHHHHHHHHHHHhc----CCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence                  788999888764321    123678888888899999987   6889999999999999999998876653222


Q ss_pred             ccccccCCC--C------CceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH
Q 011567          295 GLTEHCGVP--V------DKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV  362 (483)
Q Consensus       295 g~~~~~~v~--~------~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~  362 (483)
                      .....+..+  .      .+.+++++|++|++|..|   ||+++ ++++.+.++.....  +  ..++...+++.+.++.
T Consensus       244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~  319 (435)
T 3piu_A          244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--G--LVSSQTQHLLSAMLSD  319 (435)
T ss_dssp             CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG--S--CCCHHHHHHHHHHHHC
T ss_pred             cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhc--C--CCCHHHHHHHHHHhcC
Confidence            111111111  0      233488899999998666   89888 56677766543222  1  2245555555555542


Q ss_pred             H---hc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          363 L---EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       363 l---~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .   ++ ..+.+++++++.+++.+.|++. |+++..+..+.++++.+.......  ......++++.++++.||.+.+..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~gi~v~~g~  396 (435)
T 3piu_A          320 KKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYEVHLNISPGS  396 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSS--SHHHHHHHHHHHHHTSCEECEEGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccC--CchhHHHHHHHHHHHCCEEEeCCc
Confidence            2   21 2356788889999999999886 888776555688999885422111  111244677777776699998865


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .+...   .+..+||+++.. |++++++++++|+++++++.
T Consensus       397 ~~~~~---~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          397 SCHCT---EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             GGTCS---STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCC---CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence            43210   134599999654 99999999999999988753

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.97  E-value=7.6e-29  Score=253.60  Aligned_cols=349  Identities=12%  Similarity=0.135  Sum_probs=238.9

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~  183 (483)
                      +++|||.++.+ .+..+|.+.+++.+++++.+.+..+.....|..++...+++.+.+++|.    + +.+++++|++|+.
T Consensus        37 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~  115 (429)
T 1yiz_A           37 YKPLNLGQGFP-DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  115 (429)
T ss_dssp             HCCEECCSSSC-SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CCEEEecCCCC-CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence            36899998743 3336799999999999763211111111123334444444444444462    3 5666688889999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---------------CCHHHHHHHHHHhhhhhhhccCccEE
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---------------NDMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---------------~d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      .++++++++||.|++..+.|.++...++..|.+++.++.               .|+++|++.++   .       ++++
T Consensus       116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-------~~~~  185 (429)
T 1yiz_A          116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---E-------KTKM  185 (429)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---T-------TEEE
T ss_pred             HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc---c-------CceE
Confidence            999999999999999888888888888888888877764               35667766653   1       2677


Q ss_pred             EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC--
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G--  322 (483)
                      |+++++++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |.+......+. ..++|+++.|++|++|..|  
T Consensus       186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r  263 (429)
T 1yiz_A          186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE--PFEHIRICTLPGMWERTITIGSAGKTFSLTGWK  263 (429)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred             EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccC--CCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence            888888999999987   899999999999999999999876553  33222222221 2456899999999998666  


Q ss_pred             -ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-----H--hc-CcHHHHHHHHHHHHHHHhhccCCCceee
Q 011567          323 -GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-----L--EE-NPDLITKLKKNTAILRTGLSDIHGLSIA  393 (483)
Q Consensus       323 -G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-----l--~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~  393 (483)
                       ||+++++++++.++.......|  +.++..++++.++++.     .  ++ ..+.+++++++.+++.+.|+++ ++.+.
T Consensus       264 ~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  340 (429)
T 1yiz_A          264 IGWAYGPEALLKNLQMVHQNCVY--TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPT  340 (429)
T ss_dssp             CEEEESCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred             eEEEEeCHHHHHHHHHHHhhccc--CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence             9999999998887654322233  3467777778888887     3  21 2356777888999999999886 78776


Q ss_pred             cCCCCCEEEEEecCCCCCc----hhhHHHHHHHHHHHHHhCCEEEEeeccccccc--CCCCCceEEEccCCCCHHHHHHH
Q 011567          394 SNPESPIVFLILEKSTGSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       394 ~~~~~~i~~l~l~~~~~~~----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      .+..+.++++.+.......    ........++++.+++++||.+.++.......  ...+..+||+++  .++++|+++
T Consensus       341 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~  418 (429)
T 1yiz_A          341 VPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKA  418 (429)
T ss_dssp             ECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHH
T ss_pred             CCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHH
Confidence            5555778888885421000    00001134567766656799998764321110  000245999997  499999999


Q ss_pred             HHHHHHHH
Q 011567          468 CESLKRIS  475 (483)
Q Consensus       468 ~~~l~~~~  475 (483)
                      +++|++++
T Consensus       419 l~~l~~~l  426 (429)
T 1yiz_A          419 AEILRKWK  426 (429)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99998875

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=3.9e-28  Score=243.91  Aligned_cols=336  Identities=14%  Similarity=0.139  Sum_probs=237.8

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI  186 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai  186 (483)
                      .|+|++++   +. .+|++.+++.+++++ |+...+.....|+..+...++++++++++|.+  +.++.++|++|+..++
T Consensus         3 ~yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~   78 (384)
T 1eg5_A            3 VYFDNNAT---TR-VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWIL   78 (384)
T ss_dssp             EECBTTTC---CC-CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHH
T ss_pred             EEEecCcc---CC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH
Confidence            36676664   34 689999999999986 33322222222344567899999999999965  5667788899999999


Q ss_pred             hhhc----cCCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          187 PCFC----KKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       187 ~~~~----~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +++.    ++||.|+++.+.|.++...+   ...|.+++.++.+     |+++|++.+++          ++++|+++++
T Consensus        79 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~  148 (384)
T 1eg5_A           79 KTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE----------DTFLVSIMAA  148 (384)
T ss_dssp             HHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT----------TEEEEEEESB
T ss_pred             HhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC----------CCeEEEEECC
Confidence            9998    78999999999998876655   6678888888763     67777766642          2678888899


Q ss_pred             cCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          255 YQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       255 ~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      ++++|.+.|+++|.++|++||  +++|+||+|++|...         +++...++|++++|++|++|+.| |++++++++
T Consensus       149 ~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~  219 (384)
T 1eg5_A          149 NNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV  219 (384)
T ss_dssp             CTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS
T ss_pred             CCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcc---------cCchhcCCCEEEecHHHhcCCCceEEEEEcCCC
Confidence            999999999999999999999  999999999865321         11221245999999999998776 999888775


Q ss_pred             --HHHHHhcCC-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEE
Q 011567          332 --VDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLI  404 (483)
Q Consensus       332 --~~~~~~~~~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~~~i~~l~  404 (483)
                        ...+..... ......+.++..++++.++++.+.+ .++.+++++++.+++.+.|++ +++++..++   ...++.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~  298 (384)
T 1eg5_A          220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVS  298 (384)
T ss_dssp             CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEE
T ss_pred             ccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEE
Confidence              222111100 0012234577777777888887543 356888999999999999988 588876442   23567776


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCC-----CCceEEEccCCCCHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~-----~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      +...      +   ..++.+.+ .++||.+.++.......         ...     +..+||+++..+|++|+++++++
T Consensus       299 ~~~~------~---~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  368 (384)
T 1eg5_A          299 FPNI------R---GSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKK  368 (384)
T ss_dssp             CTTC------C---HHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHH
T ss_pred             eCCC------C---HHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHH
Confidence            6421      1   23566654 55799998753211000         000     13499999988999999999999


Q ss_pred             HHHHHHHHH
Q 011567          471 LKRISAVVL  479 (483)
Q Consensus       471 l~~~~~~~~  479 (483)
                      |+++++++.
T Consensus       369 l~~~~~~~~  377 (384)
T 1eg5_A          369 IEEILSFLD  377 (384)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999987653

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.97  E-value=3.7e-29  Score=256.24  Aligned_cols=339  Identities=14%  Similarity=0.162  Sum_probs=236.7

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-CCEEEecccH-
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-PDSILYSYGL-  179 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-e~~i~~~sG~-  179 (483)
                      .+|+++|||+++++. +..+|.+.+++.+++++++.+....  .|+......+|++.+++++    +. ++.+++++|+ 
T Consensus        53 ~~~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~  129 (432)
T 3ei9_A           53 YPDAQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK  129 (432)
T ss_dssp             CTTCCCEECSSCCCC-SCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred             CCCCCeEEccCCCCC-CCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence            357889999999887 6688999999999999865432211  2343344578888888886    43 3556665555 


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHHHHHHHHHhhhhhhhccCccE
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      +++. ++.++.++||.|+++.+.|.++..++...+.            +++.++.++...+...+++.       + .++
T Consensus       130 ~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~-~~~  200 (432)
T 3ei9_A          130 CDIS-RLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTV-------G-RTD  200 (432)
T ss_dssp             HHHH-HHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGC-------C-CCS
T ss_pred             HHHH-HHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhC-------C-CCC
Confidence            5555 4678889999999999999999888877763            56666665322221112211       1 255


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      +|+++.++|++|.+.+   +++|+++|++||+++|+||+|+.++++..+.++....+.  .+.+++++|+||++|..|  
T Consensus       201 ~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G~r  278 (432)
T 3ei9_A          201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA--EEVAMETASFSNYAGFTGVR  278 (432)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTG--GGTEEEEEESHHHHCTTTTC
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCC--CCeEEEEecchhccCCcccc
Confidence            6666678899999987   778888899999999999999987776544444433222  345788999999999777  


Q ss_pred             -ceeeccHHH--------HHHHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567          323 -GFCTGSARV--------VDHQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       323 -G~i~~~~~~--------~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                       ||+++++++        .+.+.... ...++ +.+++..+++.+++..  .+..+++.++++++.+++.+.|+++ |+.
T Consensus       279 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  355 (432)
T 3ei9_A          279 LGWTVIPKKLLYSDGFPVAKDFNRII-CTCFN-GASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD  355 (432)
T ss_dssp             CEEEECCTTCBCTTSCBHHHHHHHHH-HHSCC-CSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             eEEEEEChHHhhcchHHHHHHHHHHh-ccccC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence             999988877        55554321 11222 3467777777766642  2223467888999999999999987 888


Q ss_pred             eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      +..+..++++++.++..      +   ..+++..++++.||.+.++..+...   .+..+||++  ..++++|+++++.|
T Consensus       356 ~~~~~~~~~~~~~~~~~------~---~~~~~~~ll~~~gv~v~~g~~f~~~---~~~~iRis~--~~~~e~l~~~l~rl  421 (432)
T 3ei9_A          356 VYGGKNAPYVWVHFPNQ------S---SWDVFAEILEKTHVVTTPGSGFGPG---GEGFVRVSA--FGHRENILEACRRF  421 (432)
T ss_dssp             EEECSSSSEEEEECTTS------C---HHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEEC--CSCHHHHHHHHHHH
T ss_pred             ecCCCcceEEEEECCCC------C---HHHHHHHHHHHCCEEEeCchHhCCC---CCCEEEEEe--cCCHHHHHHHHHHH
Confidence            77656788888888521      1   2346666777669999987543210   023499997  45999999999999


Q ss_pred             HHHH
Q 011567          472 KRIS  475 (483)
Q Consensus       472 ~~~~  475 (483)
                      ++--
T Consensus       422 ~~~~  425 (432)
T 3ei9_A          422 KQLY  425 (432)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8653

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.8e-28  Score=244.27  Aligned_cols=325  Identities=16%  Similarity=0.172  Sum_probs=240.3

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAI  186 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai  186 (483)
                      .|+|..+.   +. .+|.+.+++.+++..    ..++    ...+...++++.+++++|.+  + .+++++|++|+..++
T Consensus        21 ~~l~~~~~---~~-~~~~v~~a~~~~~~~----~~~~----~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~   88 (386)
T 2dr1_A           21 YKLFTAGP---VA-CFPEVLEIMKVQMFS----HRSK----EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASI   88 (386)
T ss_dssp             SEECCSSS---CC-CCHHHHHHTTSCCCC----TTSH----HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHH
T ss_pred             ceeecCCC---cC-CcHHHHHHHhccccc----ccCH----HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHH
Confidence            45665442   22 457777776554431    1110    12468899999999999976  5 445588899999999


Q ss_pred             hhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          187 PCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       187 ~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++.++||.|++..+.|.+  +...+...|.+++.++.     .|+++|++.+++..        ++++|+++++++++|
T Consensus        89 ~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--------~~~~v~~~~~~nptG  160 (386)
T 2dr1_A           89 RNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP--------DVEAVTITYNETSTG  160 (386)
T ss_dssp             HHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT--------TCCEEEEESEETTTT
T ss_pred             HHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC--------CCcEEEEEeecCCcc
Confidence            9999999999999988887  77777888998888876     58889998886421        257888889999999


Q ss_pred             CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-C-ceeeccHHHHHHHHh
Q 011567          260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRL  337 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~  337 (483)
                      .+.|+++|+++|++||+++|+||+|++|...         +++...++|++++|++|++++. | |++++++++++.++.
T Consensus       161 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~  231 (386)
T 2dr1_A          161 VLNPLPELAKVAKEHDKLVFVDAVSAMGGAD---------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEK  231 (386)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEECTTTBTTBC---------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTT
T ss_pred             hhCCHHHHHHHHHHcCCeEEEEccccccCcc---------ccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhc
Confidence            9999999999999999999999999976542         1122224599999999999854 4 899999988876632


Q ss_pred             c--------------CC--ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecCC--
Q 011567          338 S--------------SS--GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNP--  396 (483)
Q Consensus       338 ~--------------~~--~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--  396 (483)
                      .              ..  ......+.++..++++.++++.+.+.   ++++++++++.+++.+.|+++ |+++..+.  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  310 (386)
T 2dr1_A          232 MPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGH  310 (386)
T ss_dssp             CTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTC
T ss_pred             CCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccc
Confidence            0              00  01122356777888888889887643   468899999999999999987 88776442  


Q ss_pred             -CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          397 -ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       397 -~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                       .++++++.++...     +   ..++++.++++ ||.+.+...+.     .+..+|++++..+|++|+++++++|++++
T Consensus       311 ~~~~~~~~~~~~~~-----~---~~~~~~~l~~~-gi~v~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  376 (386)
T 2dr1_A          311 ESPTITAVLTPPGI-----K---GDEVYEAMRKR-GFELAKGYGSV-----KEKTFRIGHMGYMKFEDIQEMLDNLREVI  376 (386)
T ss_dssp             BCSSEEEEECCTTC-----C---HHHHHHHHHHT-TEECEECCGGG-----TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCC-----C---HHHHHHHHHHC-CeEEecCcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             3678888874211     1   23567766655 99998765331     12459999999899999999999999998


Q ss_pred             HHH
Q 011567          476 AVV  478 (483)
Q Consensus       476 ~~~  478 (483)
                      +++
T Consensus       377 ~~~  379 (386)
T 2dr1_A          377 NEL  379 (386)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=1.9e-29  Score=253.19  Aligned_cols=328  Identities=16%  Similarity=0.156  Sum_probs=237.7

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEecccHHHHHhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG~~a~~~a  185 (483)
                      ..+.++..++++++..++.  +++.+++.....       .|+..+...+|++.++++++   .++++++++|++|+..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~   97 (375)
T 3op7_A           27 VSISSLTLEELFALSGTNP--EDFYKKLQGTKL-------NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLV   97 (375)
T ss_dssp             CSCCCCCHHHHHHHHTCCH--HHHHHHHHTSCC-------SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHH
T ss_pred             CCCCCccHHHHHhhcccch--HHHHHHHhcCCc-------CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHH
Confidence            3344444444444433332  566666665322       23333345789999999974   35778889999999999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++++.++||.|+++.+.|.++...+...|.+++.++.+       |+++|++.++.          ++++|+++++++++
T Consensus        98 ~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~~~npt  167 (375)
T 3op7_A           98 LYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP----------TTKMICINNANNPT  167 (375)
T ss_dssp             HHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----------TCCEEEEESSCTTT
T ss_pred             HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc----------CCeEEEEcCCCCCC
Confidence            99999999999999999999999999999988887754       77888777642          26778888999999


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      |.+.|   +++|+++|++||+++|+||+|+.+..+.. ....+.+     +.+++++|++|++|..|   ||++++++++
T Consensus       168 G~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~-----~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~  241 (375)
T 3op7_A          168 GAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVY-----DKGIAVNSLSKTYSLPGIRIGWVAANHQVT  241 (375)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHC-----TTEEEEEESSSSSSCGGGCCEEEECCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCC-Cchhhhc-----CCEEEEeEChhhcCCcccceEEEEeCHHHH
Confidence            99999   99999999999999999999987544310 1112222     23677889999998555   9999999999


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      +.++.....+.++  .+++.++++.++++..++ ..+.++.++++.+.+.+.|++.+++.+..+..+.+.++.+....  
T Consensus       242 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  317 (375)
T 3op7_A          242 DILRDYRDYTMIC--AGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--  317 (375)
T ss_dssp             HHHTTTGGGTTSC--CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--
T ss_pred             HHHHHHHhhhccC--CCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--
Confidence            9887654443333  467777777777775432 13456677888999999998877887765556667777775321  


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                         +   ..+++..+++++||.+.+...+..     +..+|++++  .+++++++++++|+++++++
T Consensus       318 ---~---~~~~~~~ll~~~gi~v~~g~~~~~-----~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          318 ---P---MEDFCLQLLQEHGVLLVPGNRFER-----DGYVRLGFA--CEQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             ---C---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEECCC--SCHHHHHHHHHHHHHHHGGG
T ss_pred             ---C---HHHHHHHHHHhCCEEEeChhhhCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence               1   235667666667999988754332     355999876  45699999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.97  E-value=1e-28  Score=253.14  Aligned_cols=335  Identities=12%  Similarity=0.050  Sum_probs=242.4

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEec
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYS  176 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~  176 (483)
                      .+|+++|||+++.+ .+..+|.+.+++.+++++.. .       .|+......++++.++++++        .++.++++
T Consensus        41 ~~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~  112 (437)
T 3g0t_A           41 ATGTKFCRMEMGVP-GLPAPQIGIETEIQKLREGVAS-------IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTV  112 (437)
T ss_dssp             HHTCCCEECCCCSC-CSCCCHHHHHHHHHHHHHTGGG-------SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             hcCCCEEeccCcCC-CCCCCHHHHHHHHHHHhCCcCc-------CCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence            35788999999844 34467999999999988521 1       12211123566777777665        34667778


Q ss_pred             ccHHHHHhhhhhhc--cCCc--EEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCcc
Q 011567          177 YGLSTMFSAIPCFC--KKGD--LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       177 sG~~a~~~ai~~~~--~~gd--iI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +|++++..++++++  ++||  .|+++.+.|.++...++..|.+++.++.+      |+++|++.++.  .       ++
T Consensus       113 g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--~-------~~  183 (437)
T 3g0t_A          113 GSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQT--G-------QF  183 (437)
T ss_dssp             HHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT--T-------CC
T ss_pred             CHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc--C-------Cc
Confidence            88899999999998  9999  89999999999999999999998888764      56777776632  1       24


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-------ccccCCCCCceeEEEccccc
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-------TEHCGVPVDKIDIVTAAMGH  316 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-------~~~~~v~~~~~Di~~~s~~K  316 (483)
                      ++|++..+++++|.+.|   +++|+++|++||+++|+||+|+.+.++. ...+       ....+  ..+.+++++|++|
T Consensus       184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK  260 (437)
T 3g0t_A          184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVAN--YTDNYILALSSSK  260 (437)
T ss_dssp             CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGG--TCSCEEEEEESTT
T ss_pred             eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCC--CCCcEEEEEcCcc
Confidence            56656566888999988   7889999999999999999999766652 1111       11111  1345788999999


Q ss_pred             cccCCC---ceeeccHHHHH-H-----------------HHhcCCceeecCCCcHHHHHHHHHHHHHHhc----CcHHHH
Q 011567          317 ALATEG---GFCTGSARVVD-H-----------------QRLSSSGYVFSASLPPYLASAAITAIDVLEE----NPDLIT  371 (483)
Q Consensus       317 ~lg~~G---G~i~~~~~~~~-~-----------------~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~----~~~~~~  371 (483)
                      ++|..|   ||+++++++++ .                 ++......  ..+.+++.++++.++++....    ..+.++
T Consensus       261 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  338 (437)
T 3g0t_A          261 AFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL--SSGATHSAQWGMAAMLKACNDGEYNFRDSVI  338 (437)
T ss_dssp             TTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH--HSSSCHHHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred             CCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh--cCCCCHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence            998555   99999998888 6                 43322222  234578888888888887653    356888


Q ss_pred             HHHHHHHHHHHhhccCCCceee------cC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc
Q 011567          372 KLKKNTAILRTGLSDIHGLSIA------SN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK  444 (483)
Q Consensus       372 ~l~~~~~~l~~~L~~~~~~~i~------~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~  444 (483)
                      +++++.+++.+.|+++ |+.+.      .+ ..+.++++.++..      +   ..++.+.+++ +||.+.+...+... 
T Consensus       339 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~l~~~L~~-~gi~v~~~~~~~~~-  406 (437)
T 3g0t_A          339 EYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------D---SSKLIEKFVR-YGMCAITLKTTGSK-  406 (437)
T ss_dssp             HHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------C---HHHHHHHHHH-TTEECEESTTTTCC-
T ss_pred             HHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------C---HHHHHHHHHH-cCeEEeeccccCCC-
Confidence            9999999999999987 88876      23 5678888888511      1   2356776555 59999876543211 


Q ss_pred             CCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          445 CRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       445 ~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                        .+..+|++++. .|++|+++++++|++++++
T Consensus       407 --~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          407 --RNEAMRICTSL-LPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             --CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence              11459999984 4999999999999988753

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.97  E-value=1.4e-28  Score=249.79  Aligned_cols=335  Identities=14%  Similarity=0.136  Sum_probs=236.7

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CCC-----CEEEecc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GTP-----DSILYSY  177 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~e-----~~i~~~s  177 (483)
                      .|+++|||+++.+ .+..+|.+.+++.+++++....      .|+......++++.+++++    |.+     +.++.++
T Consensus        45 ~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G  117 (404)
T 2o1b_A           45 GPLPLINMAVGIP-DGPTPQGIIDHFQKALTIPENQ------KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG  117 (404)
T ss_dssp             CSSCCEECCCCSC-SSCCCHHHHHHHHHHTTCHHHH------SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred             CCCCEEecCCcCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC
Confidence            4678999999843 3335789999999887541010      1211122355666666666    853     4555577


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      |++++..++++++++||.|+++.+.|.++...+...|.+++.++.+      |+++|++.++.          ++++|++
T Consensus       118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~l  187 (404)
T 2o1b_A          118 TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID----------KTKLIYL  187 (404)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----------HEEEEEE
T ss_pred             cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc----------CceEEEE
Confidence            7899999999999999999999998888888888889988887653      67788877742          2567777


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      +.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++.....+....+  ..+.|++++|++|++|..|   ||+
T Consensus       188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~  265 (404)
T 2o1b_A          188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN--GKDVAIEIYSLSKGYNMSGFRVGFA  265 (404)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT--HHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred             cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC--CCCCEEEEEecchhccCchhheEeE
Confidence            777888999987   78999999999999999999997655321111222111  1245888999999998556   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++++++++.++.....+.+  +.++..++++.++++..+ ..++.+++++++.+++.+.|+++ ++.+..+..+.++++.
T Consensus       266 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~  342 (404)
T 2o1b_A          266 VGNKDMIQALKKYQTHTNA--GMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLE  342 (404)
T ss_dssp             EECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEE
T ss_pred             ecCHHHHHHHHHHHhhccC--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEe
Confidence            9999998887654333333  347777777777877532 22456778888999999999887 7877654345567777


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++...     +   ..++++.+++++||.+.+...+...   .+..+||+++.  +++++++++++|+++++
T Consensus       343 ~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          343 TPPGY-----D---SEQFEQFLVQEKSILVAPGKPFGEN---GNRYVRISLAL--DDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             CCTTC-----C---HHHHHHHHHHHHCEECEESGGGCGG---GTTEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred             CCCCC-----C---HHHHHHHHHHHCCEEEeCchhhCcC---CCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence            74211     1   2356777675569999886543210   12459999985  78999999999988764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=3.6e-28  Score=245.72  Aligned_cols=345  Identities=15%  Similarity=0.115  Sum_probs=242.5

Q ss_pred             CCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----C-CE
Q 011567          100 AGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----P-DS  172 (483)
Q Consensus       100 ~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e-~~  172 (483)
                      .+..++ .+|+++|||.++. ..+..+|.+.+++.++++... +.+   ...|..++..++++.+.+.+|.     + +.
T Consensus        20 ~~~~~~~~~g~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~-~y~---~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i   94 (396)
T 3jtx_A           20 AMQGISAPEGMEAVPLHIGE-PKHPTPKVITDALTASLHELE-KYP---LTAGLPELRQACANWLKRRYDGLTVDADNEI   94 (396)
T ss_dssp             HTTTCCCCTTCCCEECSCCS-CCSCCCHHHHHHHHHTGGGGG-SCC---CTTCCHHHHHHHHHHHHHHTTTCCCCTTTSE
T ss_pred             HHHhhhhccCCCeEEeCCcC-CCCCCCHHHHHHHHHHhhhcc-CCC---CCCCcHHHHHHHHHHHHHhcCCCCCCCCCeE
Confidence            344445 6789999999985 244467999999998876421 111   1234556666677777666663     3 56


Q ss_pred             EEecccHHHHHhhhhhhccCC-----cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhh
Q 011567          173 ILYSYGLSTMFSAIPCFCKKG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR  241 (483)
Q Consensus       173 i~~~sG~~a~~~ai~~~~~~g-----diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~  241 (483)
                      ++.++|++++..+++++.++|     |.|+++.+.|.++...+...|.+++.++.+      |+++|++.+.+       
T Consensus        95 ~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~-------  167 (396)
T 3jtx_A           95 LPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK-------  167 (396)
T ss_dssp             EEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH-------
T ss_pred             EEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc-------
Confidence            666888899999999999886     789999999989888899999998888753      67788887754       


Q ss_pred             ccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC-CCCccccc---cCCCCCceeEEEccc
Q 011567          242 AKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR-SGRGLTEH---CGVPVDKIDIVTAAM  314 (483)
Q Consensus       242 ~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~-~G~g~~~~---~~v~~~~~Di~~~s~  314 (483)
                         .+++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+..+. ...+....   ++.. .+.++++.|+
T Consensus       168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~  243 (396)
T 3jtx_A          168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRS-RQKLLMFTSL  243 (396)
T ss_dssp             ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCC-CTTEEEEEES
T ss_pred             ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccc-cCcEEEEecc
Confidence               2567777778889999988   5559999999999999999998765432 11111111   1111 3447888999


Q ss_pred             cccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567          315 GHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       315 ~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                      ||+++..|   ||+++++++++.++.....  ++.+.++..++++.++++..+...+.+++++++.+.+.+.|.+.  +.
T Consensus       244 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~  319 (396)
T 3jtx_A          244 SKRSNVPGLRSGFVAGDAELLKNFLLYRTY--HGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FD  319 (396)
T ss_dssp             TTTSSCGGGCCEEEEECHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SC
T ss_pred             ccccCCcccceEEEEeCHHHHHHHHHHHhh--cccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CC
Confidence            99987666   9999999998887654322  23355788888887777642222456778888888999998775  33


Q ss_pred             eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---CCCCCceEEEccCCCCHHHHHHHH
Q 011567          392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---CRLPVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---~~~~~~lRi~~~~~~t~edi~~~~  468 (483)
                      +..+..+.++++.+...         ...+++..+++++||.+.++..+....   ...+..+||+++.  |++++++++
T Consensus       320 ~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l  388 (396)
T 3jtx_A          320 VKLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAA  388 (396)
T ss_dssp             CCCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred             ccCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHH
Confidence            44444577888887431         123566766666699999876544310   0112459999875  999999999


Q ss_pred             HHHHHHH
Q 011567          469 ESLKRIS  475 (483)
Q Consensus       469 ~~l~~~~  475 (483)
                      ++|++++
T Consensus       389 ~~l~~~l  395 (396)
T 3jtx_A          389 EDIVSLY  395 (396)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.97  E-value=3.2e-29  Score=258.01  Aligned_cols=342  Identities=13%  Similarity=0.107  Sum_probs=240.4

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-CCEE-EecccH
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-PDSI-LYSYGL  179 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-e~~i-~~~sG~  179 (483)
                      .+|+++|||+++ +.++..+|.+.+++.+++++++....  ...|+......+|++.+++++    +. ++.+ +.++++
T Consensus        66 ~~~~~~i~l~~g-~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~  142 (449)
T 3qgu_A           66 NPDAKIISLGIG-DTTEPLPKYIADAMAKAAAGLATREG--YSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK  142 (449)
T ss_dssp             CTTCCCEECSSC-CCCCCCCHHHHHHHHHHHHGGGGSCC--CCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred             CCCCCEEEeeCC-CCCCCCCHHHHHHHHHHHHhhccccC--CCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence            368899999997 45666789999999999997542111  112333344678999999998    43 3444 446666


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCe----------EEEecCCCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST----------VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~----------v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      +++..+ .++.++||.|+++.++|.++..++...|.+          ++.+++++.+.+...+++.        ..+++|
T Consensus       143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v  213 (449)
T 3qgu_A          143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA--------KRTDII  213 (449)
T ss_dssp             HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC--------CCCSEE
T ss_pred             HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc--------CCCCEE
Confidence            777776 888899999999999999999999998888          8888876543332222111        125667


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G  323 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G  323 (483)
                      +++.+++++|.+.+   +++|+++|++||+++|+||+|+.+..+..+......+.. ..+++++++|+||++|..|   |
T Consensus       214 ~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G  292 (449)
T 3qgu_A          214 FFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG-ADEVAIETCSFSKYAGFTGVRLG  292 (449)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT-GGGTEEEEEECSGGGTCTTCCCE
T ss_pred             EEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC-CCCcEEEEecchhhcCCccceeE
Confidence            76788889999987   888999999999999999999986654322222222221 1345788999999998667   9


Q ss_pred             eeeccHHHHH--------HHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCceee
Q 011567          324 FCTGSARVVD--------HQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIA  393 (483)
Q Consensus       324 ~i~~~~~~~~--------~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~  393 (483)
                      |+++++++++        .+... ....++ +.+++.++++.++++.  .+..+++.++++++.+++.+.|+++ |+.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~  369 (449)
T 3qgu_A          293 WTVVPKALKYANGEPVHADWNRV-MTTCFN-GASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY  369 (449)
T ss_dssp             EEECCTTCBCTTSCBHHHHHHHH-HHHSCC-CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred             EEecCHHHHhhhhhhHHHHHHHH-hhcccC-CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee
Confidence            9999887764        22211 112222 3467777777777754  2223467888999999999999987 88877


Q ss_pred             cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       394 ~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      .+..++++++.++ ..     +   ..++++.++++.||.+.++..+...   .+..|||++.  .|+++|++++++|++
T Consensus       370 ~~~~~~~~~~~~~-~~-----~---~~~~~~~l~~~~gI~v~pg~~f~~~---~~~~iRis~~--~~~e~i~~~l~~l~~  435 (449)
T 3qgu_A          370 GGDDAPYIWVGFP-GK-----P---SWDVFAEILERCNIVTTPGSGYGPA---GEGFVRASAF--GSRENILEAVRRFKE  435 (449)
T ss_dssp             ESSSSSEEEEECT-TS-----C---HHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEEECC-CC-----C---HHHHHHHHHHHCCEEEecchHhCCC---CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            6656888888875 11     1   2356777777669999887543211   0245999954  599999999999998


Q ss_pred             HHHH
Q 011567          474 ISAV  477 (483)
Q Consensus       474 ~~~~  477 (483)
                      ++++
T Consensus       436 ~~~~  439 (449)
T 3qgu_A          436 AYGK  439 (449)
T ss_dssp             HHC-
T ss_pred             HHHh
Confidence            8754

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=8.2e-30  Score=255.21  Aligned_cols=323  Identities=13%  Similarity=0.121  Sum_probs=234.7

Q ss_pred             CChHHHHHHHHHHHhcCC-CCC-CCCCcccChHHHHHHHHH-HHhhhCCCCEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567          124 GHEKLLESCTSALEKYGV-GSC-GPRGFYGTIDVHLDCEAR-IAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVAD  199 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~-g~~-~~~~~~g~~~~~~~l~~~-La~~~g~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~  199 (483)
                      .+|.+.+++.+++..... +.+ ..+..++..+...+++++ +++++|.+ .+++ ++|++|+..+++++.++||.|+++
T Consensus        21 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~   99 (371)
T 2e7j_A           21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMD   99 (371)
T ss_dssp             CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEc
Confidence            578999999988876421 111 112233445678899999 99999988 6655 555899999999999999999999


Q ss_pred             CCchhHHHhHhhhcCCeEEEec--CC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          200 EGVHWGIQNGLYLSRSTVVYFK--HN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       200 ~~~h~s~~~g~~~s~~~v~~~~--~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      .+.|.++..+++..|.+++.++  .+     |+++|++.+++....     .++++|+++++++++|.+.|+++|+++|+
T Consensus       100 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-----~~~~~v~~~~~~nptG~~~~~~~i~~~~~  174 (371)
T 2e7j_A          100 ENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-----GEVVLALITYPDGNYGNLPDVKKIAKVCS  174 (371)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-----SCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             cCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc-----CCeEEEEEECCCCCCcccCCHHHHHHHHH
Confidence            9999999999999999999988  65     789999888754210     13678999999999999999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHH-HHhcCCceee-----
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDH-QRLSSSGYVF-----  344 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~-~~~~~~~~~f-----  344 (483)
                      +||+++|+||+|+.|..+.   .+ ..+     ++|++++|++|++++  .+|++++++++++. ++....++.+     
T Consensus       175 ~~~~~li~D~a~~~~~~~~---~~-~~~-----~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (371)
T 2e7j_A          175 EYDVPLLVNGAYAIGRMPV---SL-KEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELL  245 (371)
T ss_dssp             TTTCCEEEECTTTBTTBCC---CH-HHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGT
T ss_pred             HcCCeEEEECccccCCCCC---Ch-hhc-----CCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccc
Confidence            9999999999999865431   11 112     238999999999863  34899999888776 5543332233     


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKL--KKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l--~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      +.+.++..++++.++++.+.+  +..+++  +++.+++.+.|+++ ++++..+.  .++++++.++           ...
T Consensus       246 ~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~  311 (371)
T 2e7j_A          246 GCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-----------VLY  311 (371)
T ss_dssp             TCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-----------HHH
T ss_pred             cCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-----------CHH
Confidence            345677777777788887765  577788  88999999999887 88876543  4778888763           133


Q ss_pred             HHHHHHHHhCCEEEEeecccccc-cCCCCCceE-EEccCC-CCHHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLD-KCRLPVGIR-LFVSAA-HSEADLVKACESLKRISAV  477 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lR-i~~~~~-~t~edi~~~~~~l~~~~~~  477 (483)
                      ++.+.+. ++||.+.+ ...... ....+..+| ++++.. +|++|+++++++|++++++
T Consensus       312 ~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          312 EISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             HHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            5666544 56998876 322110 000134599 999988 9999999999999998765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=2.8e-28  Score=243.78  Aligned_cols=320  Identities=13%  Similarity=0.078  Sum_probs=238.9

Q ss_pred             CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567          108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~  184 (483)
                      ++++|||+++ +.++  .+|.+.+++.++++.. .       .|.... ..++++++++++|.  ++.+++++|++++..
T Consensus        29 ~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~-~-------~y~~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~   97 (365)
T 3get_A           29 VKEVIKLASNENPFG--TPPKAIECLRQNANKA-H-------LYPDDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEF   97 (365)
T ss_dssp             CSCCEECSSCCCTTC--SCHHHHHHHHHHGGGT-T-------SCCCTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred             CCceEEecCCCCCCC--CCHHHHHHHHHHHHhh-c-------cCCCCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence            3679999988 6655  5799999999988752 1       121111 26899999999994  466777888999999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--C---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--N---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ++++++++||.|+++.+.|.++...++..|.+++.++.  +   |+++|++.++   .       ++++|+++.+++++|
T Consensus        98 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~-------~~~~v~~~~p~nptG  167 (365)
T 3get_A           98 AIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHK---D-------EIKLIFLCLPNNPLG  167 (365)
T ss_dssp             HHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTT---T-------TEEEEEEESSCTTTC
T ss_pred             HHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhC---C-------CCCEEEEcCCCCCCC
Confidence            99999999999999999999999999999999998886  2   3444444442   2       367888888888999


Q ss_pred             CccChHHHHHHHH--HcCcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567          260 QIAPLDELIRLKE--KYRFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       260 ~i~~L~~l~~l~~--k~~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      .+.|++++.++++  ++|+++|+||+|+.+.+   +....+.....+.  .+.+++++|++|++|..|   ||+++++++
T Consensus       168 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~  245 (365)
T 3get_A          168 ECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE--FDNVLYLGTFSKLYGLGGLRIGYGIANANI  245 (365)
T ss_dssp             CCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH--CTTEEEEEESSSTTSCTTTCCEEEEECHHH
T ss_pred             CCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc--CCCEEEEeecchHhcCcchheEEEEcCHHH
Confidence            9999888888888  77999999999987653   2111222222221  234788999999998656   999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      ++.++.....+    +.++..++++.++++..+...+.+++++++.+++.+.|+++ ++.+.. +.++++++.++..   
T Consensus       246 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~~~~~~~~~~~---  316 (365)
T 3get_A          246 ISAFYKLRAPF----NVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKIID-SYTNFITYFFDEK---  316 (365)
T ss_dssp             HHHHHHHSCTT----CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECC-CSSSEEEEECSSS---
T ss_pred             HHHHHHhcCCC----CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECC-CCCeEEEEECCCC---
Confidence            99887654442    35778888777777643333467888889999999999887 887764 4677888877432   


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                            ...++.+.+. ++||.+.+...+.      +..+|++++   |++|+++++++|++++
T Consensus       317 ------~~~~~~~~l~-~~gi~v~~g~~~~------~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          317 ------NSTDLSEKLL-KKGIIIRNLKSYG------LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             ------CHHHHHHHHH-TTTEECEECGGGT------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHH-HCCEEEEECccCC------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence                  1235666654 4699998875432      245999986   8999999999998875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.97  E-value=6.1e-28  Score=243.31  Aligned_cols=336  Identities=16%  Similarity=0.194  Sum_probs=234.0

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~  184 (483)
                      .+|||.++.+ ++..+|.+.+++.+++++...+...   ..|..++...+++.+.+++|.    + +.+++++|++++..
T Consensus        31 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~---~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~  106 (386)
T 1u08_A           31 QAINLSQGFP-DFDGPRYLQERLAHHVAQGANQYAP---MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA  106 (386)
T ss_dssp             TCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred             CeEEecCCCC-CCCCCHHHHHHHHHHHHhhccCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence            5899988744 3436799999999998762111111   123333444444444444563    3 56677888899999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++++++++||.|++..+.|.++...++..|.+++.++.      .|+++|++.+.   .       ++++|+++++++++
T Consensus       107 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~-------~~~~v~l~~p~npt  176 (386)
T 1u08_A          107 AITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS---E-------RTRLVILNTPHNPS  176 (386)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC---T-------TEEEEEEESSCTTT
T ss_pred             HHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc---c-------cCEEEEEeCCCCCC
Confidence            99999999999999999998988888889998888775      36777776663   1       26777888888999


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceeeccHHH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARV  331 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~~~~~~  331 (483)
                      |.+.|   +++|+++|++||+++|+||+|+.+.++  |.+......+. ..+.|++++|++|++|..|   ||+++++++
T Consensus       177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~  254 (386)
T 1u08_A          177 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS--QQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI  254 (386)
T ss_dssp             CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC--SSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHH
T ss_pred             CccCCHHHHHHHHHHHHHcCcEEEEEccccccccC--CCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHH
Confidence            99987   799999999999999999999876553  22221112221 1235899999999998656   999999998


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG  410 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~  410 (483)
                      ++.++.......|+  .++..++++.++++..++ .++.+++++++.+++.+.|++. |+.+..+..+.++++.++....
T Consensus       255 ~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~  331 (386)
T 1u08_A          255 SAEIRKVHQYLTFS--VNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST  331 (386)
T ss_dssp             HHHHHHHHHHHTSS--CCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC
T ss_pred             HHHHHHHHHhhccC--CChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCC
Confidence            88776543222333  356666777777775321 2347788889999999999886 8887655456788888753200


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                       .  +   ..++++.+++++||.+.+........ ..+..+|++++  .++++|++++++|++
T Consensus       332 -~--~---~~~~~~~l~~~~gi~v~~g~~f~~~~-~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          332 -L--D---DVEFCQWLTQEHGVAAIPLSVFCADP-FPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             -S--C---HHHHHHHHHHHSCEECEEGGGGCSSC-CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             -C--C---HHHHHHHHHHhCCEEEeCchHhCCCC-CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence             0  1   23566766666799998764321100 01245999997  489999999998864

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=2.7e-28  Score=245.90  Aligned_cols=317  Identities=15%  Similarity=0.116  Sum_probs=230.4

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEecccHHHHHhhhhhhccC---------
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLSTMFSAIPCFCKK---------  192 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~a~~~ai~~~~~~---------  192 (483)
                      .+|++.+++.+++.+....   +....+..+...++++++++++|.+.  .+++++|++|+..+++++..+         
T Consensus        42 ~~~~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~  118 (397)
T 3f9t_A           42 VLPITRKIVDIFLETNLGD---PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGL  118 (397)
T ss_dssp             CCTHHHHHHHHHTTCCTTS---GGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHhhcCCC---cccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc
Confidence            4689999998888763221   11122456788899999999999754  377799999999999888765         


Q ss_pred             ----CcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          193 ----GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       193 ----gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                          ||.|+++.++|.++...+...|.+++.++.+     |+++|++.+++.         ++++|+++++++++|.+.|
T Consensus       119 ~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~  189 (397)
T 3f9t_A          119 SKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY---------DVDGIIGIAGTTELGTIDN  189 (397)
T ss_dssp             CCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHS---------CCCEEEEEBSCTTTCCBCC
T ss_pred             cCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhc---------CCeEEEEECCCCCCCCCCC
Confidence                9999999999999999999999999998876     889999888652         1567777778899999999


Q ss_pred             hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-----cccCCCCCceeEEEccccccccCC--Ccee-eccHHHHHHH
Q 011567          264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-----EHCGVPVDKIDIVTAAMGHALATE--GGFC-TGSARVVDHQ  335 (483)
Q Consensus       264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-----~~~~v~~~~~Di~~~s~~K~lg~~--GG~i-~~~~~~~~~~  335 (483)
                      +++|+++|++||+++|+||+|+.+.++.++.+..     ..++... ++|+++.|++|++++.  .|++ +.++.+.+.+
T Consensus       190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~  268 (397)
T 3f9t_A          190 IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYL  268 (397)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGT
T ss_pred             HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhh
Confidence            9999999999999999999999887765543211     1222222 5689999999999522  2554 5555565554


Q ss_pred             HhcCCceeec-------CC---CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567          336 RLSSSGYVFS-------AS---LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL  405 (483)
Q Consensus       336 ~~~~~~~~fs-------~~---~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l  405 (483)
                      +.. ..+...       ++   .++..+.++.+.+... ...+..++++++.+++.+.|+++ ++++..++.++++.+.+
T Consensus       269 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  345 (397)
T 3f9t_A          269 DVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGRE-GQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIED  345 (397)
T ss_dssp             CEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEEC
T ss_pred             ccC-CccccCCCccccccccccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEe
Confidence            322 122111       11   1333444444433221 22467888899999999999988 88866666788888776


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+           ..++.+.+++ +||.+.+...        +..+|++++..+|++|+++++++|+++++
T Consensus       346 ~~-----------~~~~~~~l~~-~gi~v~~~~~--------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          346 ED-----------YKEVCKKLRD-RGIYVSVCNC--------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             TT-----------HHHHHHHHHH-TTCBCEECSS--------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             CC-----------HHHHHHHHHh-CCeEEeccCC--------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            32           2356666555 5999887643        24599999999999999999999998764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.96  E-value=2.5e-28  Score=248.67  Aligned_cols=342  Identities=14%  Similarity=0.156  Sum_probs=237.6

Q ss_pred             eeEEEeecCCC---CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------------CCC
Q 011567          109 KEVVNFASANY---LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------------TPD  171 (483)
Q Consensus       109 ~~~id~~s~~~---lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------------~e~  171 (483)
                      +++|||.++++   ..+..+|.+.+++.+++++....      .|+......++++.+|++++              .++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~  106 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN------GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN  106 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS------SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccC------CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence            46899998853   35557899999999999763211      23222334677777877776              345


Q ss_pred             EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccC
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      .+++++|++++..++++++++||.|++..+.|.++...++..|.+++.++.       .|+++|++.+++          
T Consensus       107 v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------  176 (416)
T 1bw0_A          107 VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD----------  176 (416)
T ss_dssp             EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----------
T ss_pred             EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc----------
Confidence            667788889999999999999999999999998888888888998887764       266777766532          


Q ss_pred             ccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC----ccccccCCCCCceeEEEcccccc
Q 011567          245 LRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR----GLTEHCGVPVDKIDIVTAAMGHA  317 (483)
Q Consensus       245 ~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~----g~~~~~~v~~~~~Di~~~s~~K~  317 (483)
                      .+++|++..+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |.    .......+.....+++++|++|+
T Consensus       177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (416)
T 1bw0_A          177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFK--GKDPNATFTSVADFETTVPRVILGGTAKN  254 (416)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCC--SSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred             CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCCCCccCHHHccCCCcEEEEecchhh
Confidence            1455555556888999999   999999999999999999999875543  22    22222333333346888999999


Q ss_pred             ccCCC---ceeeccHH--HHHHHHhcCCce-eecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCC
Q 011567          318 LATEG---GFCTGSAR--VVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       318 lg~~G---G~i~~~~~--~~~~~~~~~~~~-~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      ++..|   ||++++++  +++.+......+ ..+.+.++..++++.++++...  ..++.+++++++.+++.+.|+++++
T Consensus       255 ~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  334 (416)
T 1bw0_A          255 LVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIG  334 (416)
T ss_dssp             TSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            87554   88887653  433322110000 0122457888888888877421  1245778889999999999998778


Q ss_pred             ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHH
Q 011567          390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE  469 (483)
Q Consensus       390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~  469 (483)
                      +.+..+..++++++.+....-.   +.....+++..+++++||.+.++..+..     +..+|+++.  +++++++++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~~iRis~~--~~~e~l~~~l~  404 (416)
T 1bw0_A          335 LAPTMPRGAMYLMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHA-----PGFTRLTTT--RPVEVYREAVE  404 (416)
T ss_dssp             EEECCCCBTTEEEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHH
T ss_pred             CcccCCCeeEEEEEeCCHHHcC---CCCCHHHHHHHHHHHCCEEEecccccCC-----CCeEEEEec--CCHHHHHHHHH
Confidence            8776555577888877421000   0001235666666556999988654321     345999994  78999999999


Q ss_pred             HHHHHHHHH
Q 011567          470 SLKRISAVV  478 (483)
Q Consensus       470 ~l~~~~~~~  478 (483)
                      .|++++++.
T Consensus       405 ~l~~~l~~~  413 (416)
T 1bw0_A          405 RIKAFCQRH  413 (416)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=3.7e-28  Score=242.63  Aligned_cols=327  Identities=13%  Similarity=0.115  Sum_probs=240.0

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS  184 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~  184 (483)
                      +|+.+|||+++.+ .+..+|.+.+++.+++++.+....    .|+. +...++++++++++|.  ++.+++++|++|+..
T Consensus        24 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~----~y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~   97 (360)
T 3hdo_A           24 DIASWIKLNTNEN-PYPPSPEVVKAILEELGPDGAALR----IYPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNN   97 (360)
T ss_dssp             CCTTSEECSSCCC-SSCCCHHHHHHHHHHHTTTCGGGG----SCCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred             cccceeeccCCCC-CCCCCHHHHHHHHHHHhcccchhh----cCCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence            5678999999844 344679999999999987321000    1111 1236899999999994  467777899999999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                      ++++++++||.|+++.+.|.++...++..|.+++.++.++...++++++.        . +.++|+++.+++++|.+.|+
T Consensus        98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~--------~-~~~~v~i~~p~nptG~~~~~  168 (360)
T 3hdo_A           98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPER--------Y-EGKVFFLTTPNAPLGPSFPL  168 (360)
T ss_dssp             HHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSS--------B-CSSEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhh--------c-CCCEEEEeCCCCCCCCCcCH
Confidence            99999999999999999999999999999999999887642222221111        1 13477788889999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCc
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~  341 (483)
                      +++.++|++||+++|+||+|+.+ .+   .+.....+.  .+.+++++|++|++|..|   ||+++++++++.++.....
T Consensus       169 ~~l~~l~~~~~~~li~De~~~~~-~~---~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~  242 (360)
T 3hdo_A          169 EYIDELARRCAGMLVLDETYAEF-AE---SNALELVRR--HENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH  242 (360)
T ss_dssp             HHHHHHHHHBSSEEEEECTTGGG-SS---CCCTHHHHH--CSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHCCCEEEEECChHhh-CC---cchhHHhcc--CCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC
Confidence            99999999999999999999863 22   222222211  233688899999998666   9999999999988765443


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                        |  +.+++.++++.++++..+...+.+++++++.+++.+.|+++ ++.+. .+.++++++.+...      +   ..+
T Consensus       243 --~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~------~---~~~  307 (360)
T 3hdo_A          243 --Y--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDR------D---GKR  307 (360)
T ss_dssp             --C--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTC------C---HHH
T ss_pred             --C--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCC------C---HHH
Confidence              2  45788888888888753323467888899999999999887 88776 44677888776421      1   235


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +.+.+ .++||.+.+...+.     .+..+|++++   |++|+++++++|+++.+..
T Consensus       308 l~~~l-~~~gi~v~~~~~~~-----~~~~iRis~~---~~~e~~~l~~al~~~~~~~  355 (360)
T 3hdo_A          308 VYDGL-YARKVLVRHFSDPL-----LAHGMRISIG---TREEMEQTLAALKEIGEGH  355 (360)
T ss_dssp             HHHHH-HHTTEECBCCCSTT-----TTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred             HHHHH-HHCCEEEEECCCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence            66654 45699998754321     1345999985   9999999999999886543

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=5.1e-28  Score=245.38  Aligned_cols=331  Identities=11%  Similarity=0.092  Sum_probs=239.0

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      +..|+|++++.   . .+|.+.+++.++++++..+.. ....++  ..+...++++++++++|.+  +.++.++|++++.
T Consensus        26 ~~~~ld~~~~~---~-~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~  100 (406)
T 3cai_A           26 GWVHFDAPAGM---L-IPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLS  100 (406)
T ss_dssp             SCEECBGGGCC---C-CCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred             CeEEEeCCCcC---C-CCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHH
Confidence            35678877753   2 679999999999987532211 111122  2467889999999999975  4555577788888


Q ss_pred             hhhhhh---ccCCcEEEEcCCchhHHHhHhhh----cCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          184 SAIPCF---CKKGDLIVADEGVHWGIQNGLYL----SRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       184 ~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~----s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .++.++   .++||.|+++.+.|.++...+..    .|.+++.++.+      |+++|++.+++          ++++|+
T Consensus       101 ~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~  170 (406)
T 3cai_A          101 LLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK----------STRLVA  170 (406)
T ss_dssp             HHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT----------TEEEEE
T ss_pred             HHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC----------CceEEE
Confidence            888877   68899999999999887665543    58888888765      78888877642          368899


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCc-eeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGG-FCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG-~i~~~~  329 (483)
                      ++++++++|.+.|+++|.++|++||+++|+||+|+.|....   .+ ..+     ++|++++|++|++|+.+| ++++++
T Consensus       171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---~~-~~~-----~~d~~~~s~~K~~g~~~G~~~~~~~  241 (406)
T 3cai_A          171 VNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL---DI-RET-----DADVVTVNAHAWGGPPIGAMVFRDP  241 (406)
T ss_dssp             EESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCC---CH-HHH-----CCSEEEEEGGGGTSCSCEEEEESCH
T ss_pred             EeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCC---Cc-hhc-----CCCEEEeehhhhcCCCcCeEEEEeh
Confidence            99999999999999999999999999999999998653321   11 112     248999999999986678 999999


Q ss_pred             HHHHHHHhcCCc------eee-cCCCcHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHhhcc
Q 011567          330 RVVDHQRLSSSG------YVF-SASLPPYLASAAITAIDVLEE----------------NPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       330 ~~~~~~~~~~~~------~~f-s~~~~p~~~aaa~~al~~l~~----------------~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      ++++.++.....      ..| .++.++..++++.++++.+.+                .+++.++++++.+++.+.|++
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  321 (406)
T 3cai_A          242 SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS  321 (406)
T ss_dssp             HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            888776543210      112 234567777777778887764                246778888999999999998


Q ss_pred             CCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc------ccccCCCCCceEEEccCC
Q 011567          387 IHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS------MLDKCRLPVGIRLFVSAA  458 (483)
Q Consensus       387 ~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~------~~~~~~~~~~lRi~~~~~  458 (483)
                      ++++.+..+.  .++++.+.+...      +   ..++.+.+ .++||.+.+...+      ..+.  ....+|++++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~--~~~~iRis~~~~  389 (406)
T 3cai_A          322 LPLVMLIGRPEAQIPVVSFAVHKV------P---ADRVVQRL-ADNGILAIANTGSRVLDVLGVND--VGGAVTVGLAHY  389 (406)
T ss_dssp             CTTEEECCCCSSBCSEEEEEETTB------C---HHHHHHHH-HHTTEECEECCSCHHHHHHTTTT--TTCCEEEECCTT
T ss_pred             CCCeEEcCCccccCCEEEEEECCc------C---HHHHHHHH-HHCCcEEecCChHHHHHHcCCCC--CCCeEEEEeecC
Confidence            8788776432  366777777421      1   23466654 4569999876411      1100  024599999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 011567          459 HSEADLVKACESLKRI  474 (483)
Q Consensus       459 ~t~edi~~~~~~l~~~  474 (483)
                      +|++|+++++++|+++
T Consensus       390 ~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          390 STMAEVDQLVRALASL  405 (406)
T ss_dssp             CCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998753

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.96  E-value=3.1e-28  Score=248.34  Aligned_cols=349  Identities=15%  Similarity=0.172  Sum_probs=242.5

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYG--VGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLS  180 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g--~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~  180 (483)
                      ++.+|||+.++. ++..+|.+.+++.+++.+..  .+.+.   ..|..++...+++.+.+.+|.     ++.+++++|++
T Consensus        27 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~  102 (422)
T 3fvs_A           27 EHDVVNLGQGFP-DFPPPDFAVEAFQHAVSGDFMLNQYTK---TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG  102 (422)
T ss_dssp             TSCCEECCCSSC-SSCCCHHHHHHHHHHHHSCGGGGSCCC---TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred             cCCceEeCCCCC-CCCCCHHHHHHHHHHHhCCCccCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHH
Confidence            346899999853 44567999999999988622  11111   123344555555555555553     35667788889


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----------------CHHHHHHHHHHhhhhhhhcc
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------------DMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----------------d~~~Le~~l~~~~~~~~~~~  243 (483)
                      ++..++++++++||.|++..+.|.++...+...|.+++.++.+                 |+++|++.++.         
T Consensus       103 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~---------  173 (422)
T 3fvs_A          103 ALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS---------  173 (422)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT---------
T ss_pred             HHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC---------
Confidence            9999999999999999999988888888888889988877653                 56666655432         


Q ss_pred             CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEcccccccc
Q 011567          244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALA  319 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg  319 (483)
                       ++++|+++++++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |........+.. .+.+++++|+||++|
T Consensus       174 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~sK~~g  250 (422)
T 3fvs_A          174 -RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYD--GHQHISIASLPGMWERTLTIGSAGKTFS  250 (422)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred             -CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccC--CCCCCChhhcccccCcEEEEecchhccC
Confidence             3678888888999999996   899999999999999999999876553  222221111211 245788899999998


Q ss_pred             CCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------Hhc-CcHHHHHHHHHHHHHHHhhccCC
Q 011567          320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEE-NPDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       320 ~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~-~~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      ..|   ||+++++++++.+........+  +.++..++++.++++.       .++ ..++.++++++.+++.+.|++. 
T Consensus       251 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  327 (422)
T 3fvs_A          251 ATGWKVGWVLGPDHIMKHLRTVHQNSVF--HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-  327 (422)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CccceEEEEEeCHHHHHHHHHHHhhccC--CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            666   9999999998877654322233  3467778878788864       111 2457888899999999999987 


Q ss_pred             CceeecCCCCCEEEEEecCCC---CC--chhhHHHHHHHHHHHHHhCCEEEEeeccccccc--CCCCCceEEEccCCCCH
Q 011567          389 GLSIASNPESPIVFLILEKST---GS--MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~---~~--~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--~~~~~~lRi~~~~~~t~  461 (483)
                      |+.+..+..+.++++.+....   ..  ...+.....+++..+++++||.+.++.......  ...+..+||+++.  |+
T Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~  405 (422)
T 3fvs_A          328 GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DE  405 (422)
T ss_dssp             TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CH
T ss_pred             CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CH
Confidence            888776667788888764210   00  000000033567777776799998865432100  0012459999765  99


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISAV  477 (483)
Q Consensus       462 edi~~~~~~l~~~~~~  477 (483)
                      ++|++++++|++++++
T Consensus       406 e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          406 ATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=1.8e-28  Score=250.01  Aligned_cols=336  Identities=15%  Similarity=0.150  Sum_probs=240.1

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHH--h-cCCCCC-CCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALE--K-YGVGSC-GPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~--~-~g~g~~-~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~  182 (483)
                      .-|+|+++.   +. .+|.+.+++.+++.  + |+.... .....++..+...++++++++++|.+  +++++++|++|+
T Consensus        23 ~iyld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~   98 (423)
T 3lvm_A           23 PIYLDYSAT---TP-VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD   98 (423)
T ss_dssp             SEECBTTTC---CC-CCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred             CEeecCCCc---CC-CCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHH
Confidence            357776665   33 67999999998887  3 332221 12222334567789999999999976  677778999999


Q ss_pred             Hhhhhhhcc----CCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          183 FSAIPCFCK----KGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       183 ~~ai~~~~~----~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ..+++++..    +||.|+++...|.++..++   ...|.+++.++.+     |+++|++.+++          ++++|+
T Consensus        99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~  168 (423)
T 3lvm_A           99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD----------DTILVS  168 (423)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT----------TEEEEE
T ss_pred             HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC----------CcEEEE
Confidence            999988773    7999999999998887766   4458888888765     77888777643          368999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~  329 (483)
                      ++++++++|.+.|+++|+++|++||+++|+||++++|...         +++...++|++++|++|.+|+.| |++++++
T Consensus       169 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~  239 (423)
T 3lvm_A          169 IMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIGALYVRR  239 (423)
T ss_dssp             CCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTSCCSEEEEESTTTTSCSSCEEEEECB
T ss_pred             EeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------cChhhcCCCEEEechHHhcCCCCeEEEEEec
Confidence            9999999999999999999999999999999999875432         11211235899999999888665 8888877


Q ss_pred             HHHHHHHhcCCc-----eeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCE
Q 011567          330 RVVDHQRLSSSG-----YVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPI  400 (483)
Q Consensus       330 ~~~~~~~~~~~~-----~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~~i  400 (483)
                      +..+.++....+     .....+.++..++++.++++.+.+. +++.++++++.+++.+.|++++++.+..+..   ..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~  319 (423)
T 3lvm_A          240 KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI  319 (423)
T ss_dssp             TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTE
T ss_pred             cccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCe
Confidence            665544332111     0112345677777777788776542 5688899999999999999888888775433   357


Q ss_pred             EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCC-----CCceEEEccCCCCHHHHHH
Q 011567          401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       401 ~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~-----~~~lRi~~~~~~t~edi~~  466 (483)
                      +.+.+...      +   ..++.+. |.+  |.+.++.......         ...     +..||++++..+|++|+++
T Consensus       320 ~~~~~~~~------~---~~~l~~~-l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~  387 (423)
T 3lvm_A          320 LNVSFNYV------E---GESLIMA-LKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY  387 (423)
T ss_dssp             EEEEETTS------C---HHHHHHH-TTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred             EEEEeCCC------C---HHHHHHH-Hhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHH
Confidence            77777321      1   1244553 443  7666543211100         000     1349999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          467 ACESLKRISAVVL  479 (483)
Q Consensus       467 ~~~~l~~~~~~~~  479 (483)
                      ++++|+++++++.
T Consensus       388 ~~~~l~~~~~~~~  400 (423)
T 3lvm_A          388 TIELVRKSIGRLR  400 (423)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.96  E-value=5.9e-28  Score=245.62  Aligned_cols=342  Identities=14%  Similarity=0.130  Sum_probs=234.2

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~  184 (483)
                      .+|||.++.. .+..+|.+.+++.+++++...+..   ...|..++...+++.+.+.+|.    + +.+++++|++|+..
T Consensus        26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~  101 (411)
T 2o0r_A           26 GAVNLGQGFP-DEDGPPKMLQAAQDAIAGGVNQYP---PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA  101 (411)
T ss_dssp             TCEESSCSSC-SSCCCHHHHHHHHHHHHTTCCSCC---CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred             CeeeccCcCC-CCCCCHHHHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence            4789988743 333579999999999976211111   1122333444444444444463    3 56667888999999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      +++++.++||.|+++.+.|.++...+...|.+++.++.        .|+++|++.++.          ++++|+++++++
T Consensus       102 ~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~l~~~~n  171 (411)
T 2o0r_A          102 AVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP----------RTRALIINSPHN  171 (411)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT----------TEEEEEEESSCT
T ss_pred             HHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc----------CceEEEEeCCCC
Confidence            99999999999999999998888888888988877764        367777776632          267778888889


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceeeccH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSA  329 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~~~~  329 (483)
                      ++|.+.|   +++|+++|++||+++|+||+|+.+.++  |.+......+. ..++|++++|++|++|..|   ||+++++
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  249 (411)
T 2o0r_A          172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFD--HARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA  249 (411)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH
Confidence            9999988   599999999999999999999976553  33222222221 1356899999999998655   9999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      ++++.++.......|+.  ++...+++.++++..++ .+++.++++++.+++.+.|++. |+++..+..+.++++.+...
T Consensus       250 ~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~  326 (411)
T 2o0r_A          250 ELIAGVRAAKQYLSYVG--GAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPL  326 (411)
T ss_dssp             HHHHHHHHHHHHHTSCC--CTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGG
T ss_pred             HHHHHHHHHHhhccCCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCC
Confidence            98887765433223333  44555666667764321 2457788889999999999886 88876554556788887531


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc--------CCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--------CRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--------~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+   .+   ..++++.+++++||.+.+........        ...+..+||++.  .+++|+++++++|++++++.
T Consensus       327 ~~---~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~  396 (411)
T 2o0r_A          327 GY---DD---STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP  396 (411)
T ss_dssp             TC---CC---HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred             CC---CC---HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence            00   01   23567766655699998764321100        000234999986  48999999999999876554

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.96  E-value=2.4e-28  Score=245.21  Aligned_cols=333  Identities=12%  Similarity=0.029  Sum_probs=234.4

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a  181 (483)
                      +| ++|||+++ +.++  .+|.+.+++.+++... .+.+   ...|..++..++++.+.+.+|.    ++.++.++|+++
T Consensus        22 ~g-~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~-~~y~---~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~a   94 (376)
T 3ezs_A           22 KK-RGLDLGIGEPQFE--TPKFIQDALKNHTHSL-NIYP---KSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREV   94 (376)
T ss_dssp             SS-CCCBCSSCCCCSC--CCHHHHHHHHTTGGGG-GSCC---CTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHH
T ss_pred             cC-CEEEeCCCCCCCC--CCHHHHHHHHHhhhhc-CCCC---CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHH
Confidence            56 89999998 3444  5689999988877331 1111   1223445555566666555574    456677888999


Q ss_pred             HHhhhhhhccC--CcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHH----HHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          182 MFSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD----SLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       182 ~~~ai~~~~~~--gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~----~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      +..++++++++  ||.|+++.+.|.++...+...|.+++.++.++.+    ++++.+.+          ++++|++..++
T Consensus        95 l~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~~~~p~  164 (376)
T 3ezs_A           95 LFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQ----------EVDLVILNSPN  164 (376)
T ss_dssp             HHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHH----------HCSEEEECSSC
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhcc----------CCCEEEEcCCC
Confidence            99999999999  9999999999999999999999999988876432    45555543          14566666778


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC---CCCCceeEEEccccccccCCC---ceee
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG---VPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~---v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      +++|.+.|   +++|+++|++||+++|+||+|+.+..+.....+....+   .+..+.+++++|+||++|..|   ||++
T Consensus       165 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  244 (376)
T 3ezs_A          165 NPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIA  244 (376)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             CCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEe
Confidence            88999988   77888889999999999999998655432222222110   001345788999999998666   9999


Q ss_pred             ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      +++++++.++.......+  +.++..++++.++++..+...+..++++++.+++.+.|+   ++.  .+..+.++++.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~  317 (376)
T 3ezs_A          245 GDSRLLEKYKAFRAYLGY--TSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ  317 (376)
T ss_dssp             ECHHHHHHHHHHHTTTCC--CCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS
T ss_pred             eCHHHHHHHHHHHhhhcC--CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC
Confidence            999999887765443333  457888888878877432234567778888888888886   444  3446778888774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                                 ...++++.+++++||.+.++..+... ...+..+||+++.  |++|+++++++|++++++
T Consensus       318 -----------~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          318 -----------NGENFAKTLYQNEGIITLPALYLGRN-RIGADYVRLALVY--DTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             -----------CHHHHHHHHHHHHCCBCEEGGGGCST-TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred             -----------CHHHHHHHHHHhCCEEEeCcHHhCCC-CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence                       12356777666469999887654321 0113459999873  999999999999988753

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=4.4e-28  Score=243.02  Aligned_cols=334  Identities=15%  Similarity=0.115  Sum_probs=234.1

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP  187 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~  187 (483)
                      |+|++++   +. .+|.+.+++.+++.+.... .......++..+...++++++++++|.+  +.+++++|++++..+++
T Consensus         3 yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~   78 (382)
T 4hvk_A            3 YFDYTSA---KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII   78 (382)
T ss_dssp             BCBTTTC---CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHH
T ss_pred             eecCCCc---CC-CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHH
Confidence            5666654   23 6799999999999873211 1111111234567789999999999975  35566888899999999


Q ss_pred             hhc----cCCcEEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          188 CFC----KKGDLIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       188 ~~~----~~gdiI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ++.    ++||.|+++...|.++...+..   .|.+++.++.+     |+++|++.+++          ++++|++++++
T Consensus        79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~~  148 (382)
T 4hvk_A           79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----------DTILVSVQHAN  148 (382)
T ss_dssp             HHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEEEECCSBC
T ss_pred             HhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc----------CceEEEEECCC
Confidence            988    8999999999999988776554   58888888765     77888776642          36899999999


Q ss_pred             CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHH
Q 011567          256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDH  334 (483)
Q Consensus       256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~  334 (483)
                      +++|.+.|+++|.++|++||+ +|+||+|++|...         +++...++|++++|++|.+|+.| |+++.+++.  .
T Consensus       149 nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~  216 (382)
T 4hvk_A          149 NEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIE---------VDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--K  216 (382)
T ss_dssp             TTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC---------CCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--C
T ss_pred             CCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC---------CCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--C
Confidence            999999999999999999999 9999999875432         11111134899999999888654 777665543  1


Q ss_pred             HHhcCC----ce-eecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEe
Q 011567          335 QRLSSS----GY-VFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLIL  405 (483)
Q Consensus       335 ~~~~~~----~~-~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~~i~~l~l  405 (483)
                      ++....    .. ....+.++..++++.++++.+.+ .++..++.+++.+++.+.|++++++.+..+..   ..++.+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  296 (382)
T 4hvk_A          217 LQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF  296 (382)
T ss_dssp             CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE
T ss_pred             cCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE
Confidence            111110    00 11234567777777777776543 25678889999999999999888888764432   24777776


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC---------CC-----CCceEEEccCCCCHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC---------RL-----PVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~---------~~-----~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      ...      +   ..++.+. |.++||.+.++..+.....         ..     +..||++++..+|++|+++++++|
T Consensus       297 ~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l  366 (382)
T 4hvk_A          297 SYI------E---GESIVLS-LDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL  366 (382)
T ss_dssp             TTC------C---HHHHHHH-HHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCC------C---HHHHHHH-HHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            421      1   2245665 4556999887543221100         00     245999999999999999999999


Q ss_pred             HHHHHHHHh
Q 011567          472 KRISAVVLR  480 (483)
Q Consensus       472 ~~~~~~~~~  480 (483)
                      +++++++.+
T Consensus       367 ~~~~~~~~~  375 (382)
T 4hvk_A          367 PGVIERLRS  375 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.96  E-value=1.4e-27  Score=238.91  Aligned_cols=320  Identities=11%  Similarity=0.098  Sum_probs=239.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~a  185 (483)
                      +++|||+++.. .+..+|++.+++.+++.+.+..      .|+. ....++++++++++|.   ++.+++++|++++..+
T Consensus        30 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~  101 (367)
T 3euc_A           30 HGLVKLDAMEN-PYRLPPALRSELAARLGEVALN------RYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISML  101 (367)
T ss_dssp             TTCEECCSSCC-CCCCCHHHHHHHHHHHHHHHTT------CSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHH
T ss_pred             CCeeEccCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHH
Confidence            57899999842 2335799999999998853221      1221 2357899999999997   4566668888999999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      ++++.++||.|++..+.|.++...++..|.+++.++.+     |+++|++.+++.         ++++|+++.+++++|.
T Consensus       102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~  172 (367)
T 3euc_A          102 ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEH---------QPAIVYLAYPNNPTGN  172 (367)
T ss_dssp             HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHH---------CCSEEEEESSCTTTCC
T ss_pred             HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhcc---------CCCEEEEcCCCCCCCC
Confidence            99999999999999999988888888889998888743     788898888653         1567777788888999


Q ss_pred             ccC---hHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          261 IAP---LDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       261 i~~---L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      +.|   +++|+++|++|  |+++|+||+|+.+. +   .+.....+.  .+.+++++|++|+ +..|   ||++++++++
T Consensus       173 ~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~---~~~~~~~~~--~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~  245 (367)
T 3euc_A          173 LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-Q---ESWMSRLTD--FGNLLVMRTVSKL-GLAGIRLGYVAGDPQWL  245 (367)
T ss_dssp             CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-S---CCSGGGGGT--CTTEEEEEECCCT-TSCSCCEEEEEECHHHH
T ss_pred             CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-c---cchHHHHhh--CCCEEEEecchhh-cccccCceeeeeCHHHH
Confidence            976   78888889999  99999999998643 1   222222222  3346888899999 6555   8999999999


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.++.....+    +.+++.++++.++++..+...+..++++++.+++.+.|++++++.+. ++.++++++.++      
T Consensus       246 ~~~~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~------  314 (367)
T 3euc_A          246 EQLDKVRPPY----NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP------  314 (367)
T ss_dssp             HHHGGGCCSS----CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS------
T ss_pred             HHHHHhCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC------
Confidence            8887654432    35788888888888763223467888899999999999988888865 446778888774      


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                        +   ..++.+. |.++||.+.+...+..   ..+..+|++++   |++|+++++++|++++
T Consensus       315 --~---~~~l~~~-l~~~gi~v~~~~~~~~---~~~~~iRis~~---~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          315 --D---AAQTFDR-LLARKVLIKNVSKMHP---LLANCLRVTVS---TPEENAQFLEAFAASL  365 (367)
T ss_dssp             --C---HHHHHHH-HHTTTEECEECGGGCG---GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             --C---HHHHHHH-HHHCCeEEEECCccCC---CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence              1   2345665 4567999987654210   01245999975   9999999999998875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.96  E-value=1.4e-27  Score=238.07  Aligned_cols=321  Identities=15%  Similarity=0.168  Sum_probs=232.3

Q ss_pred             ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHH
Q 011567          106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTM  182 (483)
Q Consensus       106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~  182 (483)
                      .+|+++|||+++ ++++  .+|.+.+++.++++++..        |. .+...+++++++++++.  ++.+++++|++++
T Consensus        23 ~~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~~~~~--------y~-~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al   91 (361)
T 3ftb_A           23 FKGRELLDYSSNINPLG--IPKSFLNNIDEGIKNLGV--------YP-DVNYRRLNKSIENYLKLKDIGIVLGNGASEII   91 (361)
T ss_dssp             -----CEETTCCCCTTC--SCHHHHTTHHHHHHGGGS--------CC-CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHH
T ss_pred             cCCCCEEEecCCCCCCC--CCHHHHHHHHHHHHHhcC--------CC-CccHHHHHHHHHHHhCCCcceEEEcCCHHHHH
Confidence            489999999998 6665  469999999999887321        11 12347899999999985  3455558888999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      ..+++++    |.|+++.+.|.++...++..|.+++.++.+     |++++++.+++           +++|+++.++++
T Consensus        92 ~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-----------~~~v~i~~p~np  156 (361)
T 3ftb_A           92 ELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-----------VDSVIIGNPNNP  156 (361)
T ss_dssp             HHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-----------CSEEEEETTBTT
T ss_pred             HHHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-----------CCEEEEeCCCCC
Confidence            9999988    788888888888888899899998888743     45666666543           346667777888


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee-ccHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSAR  330 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~  330 (483)
                      +|.+.|   +++|+++|++||+++|+||+|+.+..+ .+.+.....+.  .+.+++++|++|++|..|   ||++ ++++
T Consensus       157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~  233 (361)
T 3ftb_A          157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN--YSCLFIIRAMTKFFAMPGIRFGYGITNNKE  233 (361)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT--CSSEEEEEESSSTTSCGGGCCEEEEESCHH
T ss_pred             CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc--CCCEEEEeeChhhcCCCCcceeEEEeCCHH
Confidence            999988   677888899999999999999876665 23333343333  233688899999998555   8887 8999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce-eecCCCCCEEEEEecCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS-IASNPESPIVFLILEKST  409 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~-i~~~~~~~i~~l~l~~~~  409 (483)
                      +++.++.....+    +.+++.++++.++++..+..++.+++++++.+++.+.|++++++. +. .+.++++++.+... 
T Consensus       234 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-  307 (361)
T 3ftb_A          234 IAAKIKAKQNPW----NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENI-  307 (361)
T ss_dssp             HHHHHHTTSCTT----CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSS-
T ss_pred             HHHHHHhhCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCC-
Confidence            999887654432    457888888877776422224577888899999999999888887 65 44678888887531 


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                           +   ..++.+.+++ +||.+.++.....   ..+..+|++++   ++++++++.++|+++.+
T Consensus       308 -----~---~~~l~~~l~~-~gi~v~~g~~~~~---~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          308 -----S---GEKLYDSLLK-EDIVIRRCCNFIG---LDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             -----C---HHHHHHHHHT-TTEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             -----C---HHHHHHHHHH-CCeEEeeCccCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence                 1   2356776555 5999987653211   01245999985   88999999999988764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=5.5e-28  Score=243.44  Aligned_cols=317  Identities=16%  Similarity=0.163  Sum_probs=230.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCC-CCCCCCCcccC-hHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhh-ccCCc
Q 011567          120 LGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGT-IDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCF-CKKGD  194 (483)
Q Consensus       120 lG~~~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~-~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~-~~~gd  194 (483)
                      .|. .++.+.+++.+++++... +..+.+ .|.. .+...++++.|++++|.+  +.+++++|++|+..+++++ .++||
T Consensus        25 ~~~-~~~~v~~a~~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd  102 (390)
T 1elu_A           25 QGI-LPTVALEAITAMYGYLQENGPFSIA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGD  102 (390)
T ss_dssp             CCC-CCHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTC
T ss_pred             cCC-CCHHHHHHHHHHHHHHhccCCcchh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCC
Confidence            455 568899999999886421 111000 1222 357789999999999975  5677789999999999999 78999


Q ss_pred             EEEEcCCchhHHHhH----hhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          195 LIVADEGVHWGIQNG----LYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       195 iI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                      .|++..+.|.+...+    .+..|.+++.++.+       |+++|++.++   +       ++++|+++++++++|.+.|
T Consensus       103 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~-------~~~~v~~~~~~nptG~~~~  172 (390)
T 1elu_A          103 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---P-------KTRLVILSHLLWNTGQVLP  172 (390)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---T-------TEEEEEEESBCTTTCCBCC
T ss_pred             EEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---C-------CceEEEEeccccCCceecC
Confidence            999999988886654    35568888888763       4455554442   2       3688899999999999999


Q ss_pred             hHHHHHHHH----HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccc-cccCCC-ceeeccHHHHHHHHh
Q 011567          264 LDELIRLKE----KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH-ALATEG-GFCTGSARVVDHQRL  337 (483)
Q Consensus       264 L~~l~~l~~----k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K-~lg~~G-G~i~~~~~~~~~~~~  337 (483)
                      +++|+++|+    +||+++|+||+|++|..+         .++....+|++++|++| .+|+.| |++++++++++.++.
T Consensus       173 ~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~  243 (390)
T 1elu_A          173 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINP  243 (390)
T ss_dssp             HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCC
T ss_pred             HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---------CChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCC
Confidence            999999999    999999999999875432         12222345899999999 456666 899999888776543


Q ss_pred             cCCc------------e-------ee-cCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          338 SSSG------------Y-------VF-SASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       338 ~~~~------------~-------~f-s~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      ...+            |       .+ .++.++..++++.++++.+.+   .+++.++++++.+++.+.|++++|+++..
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  323 (390)
T 1elu_A          244 TYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLA  323 (390)
T ss_dssp             CSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred             ccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEec
Confidence            2111            1       11 224566767777777876653   34678899999999999999877888764


Q ss_pred             --CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          395 --NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       395 --~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                        ...++++.+.++...     +   ..++.+.+ .++||.+.+...        +..+||+++..+|++|+++++++|+
T Consensus       324 ~~~~~~~~~~~~~~~~~-----~---~~~~~~~l-~~~gi~v~~~~~--------~~~iRis~~~~~~~~~i~~~~~~l~  386 (390)
T 1elu_A          324 TSAPQAGLVSFTVDSPL-----G---HRAIVQKL-EEQRIYLRTIAD--------PDCIRACCHYITDEEEINHLLARLA  386 (390)
T ss_dssp             SSCCSSSEEEEEECSSS-----C---HHHHHHHH-HHTTEECEEETT--------TTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred             CccccccEEEEEcCCCC-----C---HHHHHHHH-HHCCEEEEecCC--------CCeEEEecccCCCHHHHHHHHHHHH
Confidence              236778888774211     1   23566665 456999987641        2459999999999999999999987


Q ss_pred             HH
Q 011567          473 RI  474 (483)
Q Consensus       473 ~~  474 (483)
                      ++
T Consensus       387 ~~  388 (390)
T 1elu_A          387 DF  388 (390)
T ss_dssp             TC
T ss_pred             hh
Confidence            53

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.96  E-value=4.6e-28  Score=241.62  Aligned_cols=323  Identities=13%  Similarity=0.147  Sum_probs=231.7

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC-h-HHHHHHHHHHHhhhCCC----CEEEecccHHHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT-I-DVHLDCEARIAKFLGTP----DSILYSYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~-~-~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~  183 (483)
                      +++||..+ +++  .+|++.+++.+++   +.       .++. . +...++++++++++|.+    +.+++++|++|+.
T Consensus         4 ~~~~~~~g-p~~--~~~~v~~a~~~~~---~~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~   70 (366)
T 1m32_A            4 NYLLLTPG-PLT--TSRTVKEAMLFDS---CT-------WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVE   70 (366)
T ss_dssp             -CEECSSS-SCC--CCHHHHHTTCCCC---CT-------TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHH
T ss_pred             ccccccCC-CcC--CCHHHHHHHhhhh---cC-------CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHH
Confidence            36788777 333  5688888877632   21       1111 1 56789999999999943    3667789999999


Q ss_pred             hhhhhhccCCcE-EEEcCCchhH-HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          184 SAIPCFCKKGDL-IVADEGVHWG-IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       184 ~ai~~~~~~gdi-I~~~~~~h~s-~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      .+++++.++||. |+.+.++|.+ +...+...|.+++.++.     .|+++|++.+++..        .+++|++....+
T Consensus        71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--------~~~~v~~~~~~n  142 (366)
T 1m32_A           71 AVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP--------TISHIAMVHSET  142 (366)
T ss_dssp             HHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT--------TCCEEEEESEET
T ss_pred             HHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC--------CeEEEEEecccC
Confidence            999999888885 4566688876 44556667877776653     57889998886521        145676777778


Q ss_pred             CCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHH
Q 011567          257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDH  334 (483)
Q Consensus       257 ~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~  334 (483)
                      ++|.+.|+++|+++|++||+++|+||+|++|..+         +++...++|++++|++|++ |+.| |++++++++++.
T Consensus       143 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~  213 (366)
T 1m32_A          143 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA  213 (366)
T ss_dssp             TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT
T ss_pred             CcceecCHHHHHHHHHHcCCEEEEECCccccCcC---------ccccccCccEEEecCcccccCCCceEEEEECHHHHHh
Confidence            8999999999999999999999999999876432         1222224589999999988 5556 999999988876


Q ss_pred             HHhcCCceee----------------cCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          335 QRLSSSGYVF----------------SASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       335 ~~~~~~~~~f----------------s~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                      ++....++.+                ..+.++..++++.++++.+.+.   ++++++++++.+++.+.|+++ ++++..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~  292 (366)
T 1m32_A          214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLD  292 (366)
T ss_dssp             CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred             hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence            6543222211                1356778888888888877542   568889999999999999887 7776543


Q ss_pred             --CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          396 --PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       396 --~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                        ..++ ++++.+++..+   .+   ..++.+.+++ +||.+.+...+.      +..+|++++..+|++|+++++++|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~-~gi~v~~~~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~  359 (366)
T 1m32_A          293 DELHSPIITAFYSPEDPQ---YR---FSEFYRRLKE-QGFVIYPGKVSQ------SDCFRIGNIGEVYAADITALLTAIR  359 (366)
T ss_dssp             GGGBCSSEEEEECCCCTT---CC---HHHHHHHHHH-TTEECEECCCSS------SCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             chhcCceEEEEEcCccCC---CC---HHHHHHHHHH-CCEEEECCcCCC------CCEEEEecCCCCCHHHHHHHHHHHH
Confidence              1344 78888753101   01   2356776555 599998754321      3459999999999999999999999


Q ss_pred             HHHH
Q 011567          473 RISA  476 (483)
Q Consensus       473 ~~~~  476 (483)
                      ++++
T Consensus       360 ~~~~  363 (366)
T 1m32_A          360 TAMY  363 (366)
T ss_dssp             HHCT
T ss_pred             HHHH
Confidence            8764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.96  E-value=1.1e-27  Score=243.25  Aligned_cols=341  Identities=14%  Similarity=0.146  Sum_probs=236.4

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------C-CCEEEecccH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------T-PDSILYSYGL  179 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~-e~~i~~~sG~  179 (483)
                      .++|||+.++. .+..+|.+.+++.+++.+....      .|+......++++.++++++        . ++.+++++|+
T Consensus        23 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~   95 (410)
T 3e2y_A           23 PSVVNLGQGFP-DISPPSYVKEELSKAAFIDNMN------QYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAY   95 (410)
T ss_dssp             TTSEECSSCCC-CSCCCHHHHHHHHHHHTCGGGG------SCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHH
T ss_pred             CCeEEecCCCC-CCCCCHHHHHHHHHHHhCcccc------CCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcH
Confidence            46899998853 5556799999999998753110      11111113455555555554        2 4566778888


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----------------CHHHHHHHHHHhhhhhhhcc
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----------------DMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----------------d~~~Le~~l~~~~~~~~~~~  243 (483)
                      +++..++++++++||.|++..+.|..+...+...|.+++.++.+                |+++|++.++.         
T Consensus        96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~---------  166 (410)
T 3e2y_A           96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS---------  166 (410)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT---------
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC---------
Confidence            99999999999999999999999989888888889988877653                66777665532         


Q ss_pred             CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEcccccccc
Q 011567          244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALA  319 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg  319 (483)
                       ++++|+++++++++|.+.+   +++|+++|++||+++|+||+|+.+.++  |.......... ..+.++++.|+||++|
T Consensus       167 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~sK~~g  243 (410)
T 3e2y_A          167 -KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYT--GHTHVKIATLPGMWERTITIGSAGKTFS  243 (410)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred             -CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccC--CCCCCCHHHcCCccCeEEEEecchhhcC
Confidence             3678888899999999964   899999999999999999999876543  22221111111 1245688899999998


Q ss_pred             CCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------h-cCcHHHHHHHHHHHHHHHhhccCC
Q 011567          320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------E-ENPDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       320 ~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~-~~~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      ..|   ||+++++++++.++.......+  +.++..++++.++++..       . ...++.++++++.+++.+.|+++ 
T Consensus       244 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  320 (410)
T 3e2y_A          244 VTGWKLGWSIGPAHLIKHLQTVQQNSFY--TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-  320 (410)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCceEEEEEECHHHHHHHHHHHHhhcc--CCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            666   9999999998887654322233  34677777777777641       1 12457788889999999999987 


Q ss_pred             CceeecCCCCCEEEEEecCCCCCchh---hHHHHHHHHHHHHHhCCEEEEeecccccccC--CCCCceEEEccCCCCHHH
Q 011567          389 GLSIASNPESPIVFLILEKSTGSMKN---DLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~~~~~~---~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~--~~~~~lRi~~~~~~t~ed  463 (483)
                      |+.+..+..+.++++.+.........   +.....+++..+++++||.+.++........  ..+..+||++..  |+++
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~  398 (410)
T 3e2y_A          321 GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDST  398 (410)
T ss_dssp             TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHH
T ss_pred             CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHH
Confidence            88877666777888877532110000   0011235666667777999988654321100  002349999764  9999


Q ss_pred             HHHHHHHHHH
Q 011567          464 LVKACESLKR  473 (483)
Q Consensus       464 i~~~~~~l~~  473 (483)
                      |++++++|++
T Consensus       399 l~~~l~~l~~  408 (410)
T 3e2y_A          399 LDAAEEIFRA  408 (410)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=1.3e-27  Score=239.10  Aligned_cols=327  Identities=13%  Similarity=0.080  Sum_probs=232.8

Q ss_pred             ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567          106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM  182 (483)
Q Consensus       106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~  182 (483)
                      .+|+++|||+++ +.+|  .+|.+.+++.+++++. .       .|+. ....++++++++++|.+  +.++.++|++++
T Consensus        21 ~~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~~~-~-------~y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al   89 (364)
T 1lc5_A           21 ISPDQLLDFSANINPLG--MPVSVKRALIDNLDCI-E-------RYPD-ADYFHLHQALARHHQVPASWILAGNGETESI   89 (364)
T ss_dssp             SCGGGSEECSSCCCTTC--CCHHHHHHHHHTGGGG-G-------SCCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHH
T ss_pred             CCccceEEeccccCCCC--CCHHHHHHHHHHHHHh-h-------cCCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHH
Confidence            467889999987 3344  5799999999887652 1       1221 12578999999999964  455567778999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC---HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d---~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ..+++++  ++|.|++..+.|.++...++..|.+++.++.++   ++.++++++....       ++++|++..+++++|
T Consensus        90 ~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~-------~~~~v~i~~p~nptG  160 (364)
T 1lc5_A           90 FTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTP-------DLDCLFLCTPNNPTG  160 (364)
T ss_dssp             HHHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCT-------TCCEEEEESSCTTTC
T ss_pred             HHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccC-------CCCEEEEeCCCCCCC
Confidence            9999988  668888888888888888888899998887652   2113444444322       245566666688899


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee-ccHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~~~  332 (483)
                      .+.|   +++|+++|++||+++|+||+|+.+..+  +....+..+.  .+.|++++|++|++|..|   ||++ ++++++
T Consensus       161 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  236 (364)
T 1lc5_A          161 LLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKD--NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAM  236 (364)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTT--CTTEEEEEESTTTTTCTTTCCEEEECCCHHHH
T ss_pred             CCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhcc--CCCEEEEEECchhhcCCccceEEEEECCHHHH
Confidence            9999   899999999999999999999876543  3333333332  334888999999998555   9998 999999


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      +.++.....    .+.+++.++++.++++..+..++.+++++++.+++.+.|++++++.+.. +.++++++.++..    
T Consensus       237 ~~l~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~----  307 (364)
T 1lc5_A          237 ARMRRQQMP----WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLLRCERE----  307 (364)
T ss_dssp             HHHHHHSCT----TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEEEESCT----
T ss_pred             HHHHHhCCC----CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEEECCCc----
Confidence            888765432    2457787777777775422224567778888999999998877887763 5678888877431    


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                            ..++.+.++ ++||.+.+......   ..+..+|+++.   +++|+++++++|+++++++
T Consensus       308 ------~~~l~~~l~-~~gi~v~~g~~~~~---~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          308 ------DIDLQRRLL-TQRILIRSCANYPG---LDSRYYRVAIR---SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             ------TCCHHHHHH-TTTEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred             ------HHHHHHHHH-HCCcEEeeCcccCC---CCCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence                  113566555 46999988653211   01245999974   6899999999999887654

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.3e-28  Score=250.42  Aligned_cols=348  Identities=15%  Similarity=0.189  Sum_probs=238.0

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~  182 (483)
                      .|+++|||+.+.+ .+..++.+.+++.+++++.+....++  ..|..++...+++.+.+++|.    ++.+++++|++|+
T Consensus        55 ~~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al  131 (447)
T 3b46_A           55 QGRELINLGQGFF-SYSPPQFAIKEAQKALDIPMVNQYSP--TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI  131 (447)
T ss_dssp             TTSCCEECCCCSC-SSCCCHHHHHHHHHHTTSGGGGSCCC--TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred             cCCCeEEccCCCC-CCCCCHHHHHHHHHHHhCcCCCCCCC--CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            4668999998743 44467999999999987632211111  223344444444444444453    3566667889999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----------------CCHHHHHHHHHHhhhhhhhccCc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----------------NDMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----------------~d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      ..++++++++||.|++..++|.++...+...|.+++.++.                 .|+++|++.++   .       +
T Consensus       132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-------~  201 (447)
T 3b46_A          132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---S-------K  201 (447)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---T-------T
T ss_pred             HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc---c-------C
Confidence            9999999999999999999998988888888988876652                 35666665553   1       2


Q ss_pred             cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC
Q 011567          246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +++|+++++++++|.+.+   +++|+++|++||+++|+||+|+.+.++.....+... .....+.|++++|+||++|..|
T Consensus       202 ~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G  280 (447)
T 3b46_A          202 TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATL-SPEIGQLTLTVGSAGKSFAATG  280 (447)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS-CHHHHTTEEEEEEHHHHTTCTT
T ss_pred             CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHc-CCCCCCcEEEEecCchhcCCcc
Confidence            677888888899999875   899999999999999999999976554211122111 0001245899999999998666


Q ss_pred             ---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--c-CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          323 ---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--E-NPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       323 ---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                         ||+++ ++++++.++.......|+  .++..++++.++|+...  + .++++++++++.+++.+.|+++ |+++..+
T Consensus       281 ~riG~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  357 (447)
T 3b46_A          281 WRIGWVLSLNAELLSYAAKAHTRICFA--SPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAP  357 (447)
T ss_dssp             SCCEEEECSCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECC
T ss_pred             hhhEEEEeCCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC
Confidence               99999 999988876543233333  36666777777887652  2 2457888899999999999887 8877655


Q ss_pred             CCCCEEEEEecCCCCCch-------hhHHHHHHHHHHHHHhCCEEEEeecccccccC--CCCCceEEEccCCCCHHHHHH
Q 011567          396 PESPIVFLILEKSTGSMK-------NDLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       396 ~~~~i~~l~l~~~~~~~~-------~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~--~~~~~lRi~~~~~~t~edi~~  466 (483)
                      ..+.++++.+........       .+.....++++++++++||.+.+.........  ..+..+||+++  .++++|++
T Consensus       358 ~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~  435 (447)
T 3b46_A          358 EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLEN  435 (447)
T ss_dssp             SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHH
T ss_pred             CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHH
Confidence            567788888753200000       00012346777777667999987643211100  00245999997  48999999


Q ss_pred             HHHHHHH
Q 011567          467 ACESLKR  473 (483)
Q Consensus       467 ~~~~l~~  473 (483)
                      ++++|++
T Consensus       436 ~~~~l~~  442 (447)
T 3b46_A          436 AVERLKL  442 (447)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
Confidence            9999976

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.96  E-value=5.4e-27  Score=235.07  Aligned_cols=317  Identities=15%  Similarity=0.130  Sum_probs=232.8

Q ss_pred             EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh------hCC-CC-EEEecccHHHHH
Q 011567          112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF------LGT-PD-SILYSYGLSTMF  183 (483)
Q Consensus       112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~------~g~-e~-~i~~~sG~~a~~  183 (483)
                      |||+++.+ .+..+|++.+++.+++++.+...    ..|+.... .++++.++++      ++. ++ .++.++|++++.
T Consensus        33 idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~  106 (369)
T 3cq5_A           33 IRLNTNEN-PYPPSEALVADLVATVDKIATEL----NRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ  106 (369)
T ss_dssp             EECSSCCC-CSCCCHHHHHHHHHHHHHHGGGT----TSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             eeccCCCC-CCCCCHHHHHHHHHHHHhccccc----ccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence            89999854 34467999999999998742111    12222222 4777888877      342 34 444466678899


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      .++++++++||.|+++.+.|.++...+...|.+++.++++     |+++|++.+++.         ++++|+++++++++
T Consensus       107 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~npt  177 (369)
T 3cq5_A          107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAK---------QPDIVFVTTPNNPT  177 (369)
T ss_dssp             HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHH---------CCSEEEEESSCTTT
T ss_pred             HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhcc---------CCCEEEEeCCCCCC
Confidence            9999999999999999999999988899899998888754     677888777542         15677789999999


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCc-eeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK-IDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~-~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      |.+.|++++.++|+.+++++|+||+|+.+..+   .......+.  .+ .+++++|++|++|..|   ||+++++++++.
T Consensus       178 G~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~  252 (369)
T 3cq5_A          178 GDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLEK--YPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDA  252 (369)
T ss_dssp             CCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTTT--CTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHhh--CCCCEEEEEechHhcCCcccceEEEEeCHHHHHH
Confidence            99999999999999999999999999876532   111122121  12 4788899999998666   999999999888


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      ++.....+    +.+++.++++.++++..+..++.+++++++.+++.+.|++. |+.+. ++.++++++.++.       
T Consensus       253 l~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-------  319 (369)
T 3cq5_A          253 VMLVRLPY----HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFS-------  319 (369)
T ss_dssp             HHTTSCTT----CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCS-------
T ss_pred             HHHcCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCC-------
Confidence            87654432    35788888888888753322347788889999999999874 78776 4567888887631       


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      +   ..++.+.+ .++||.+.+...        +..+|++++   |++|+++++++|++++.
T Consensus       320 ~---~~~l~~~l-~~~gi~v~~~~~--------~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          320 D---QHAAWQAF-LDRGVLIRDVGI--------AGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             S---HHHHHHHH-HHTTEECBCCSC--------TTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             C---HHHHHHHH-HHCCEEEEECCC--------CCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            1   23466655 456999987521        245999986   89999999999988753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=1.7e-27  Score=240.50  Aligned_cols=323  Identities=15%  Similarity=0.147  Sum_probs=236.0

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-C--EEEecccHHHHHhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-D--SILYSYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~--~i~~~sG~~a~~~a  185 (483)
                      +.|+|..+.   +. .+|.+.+++.+++..   + .+    ....+...++++.+++++|.+ +  .+++++|++|+..+
T Consensus        34 ~~~l~~~~~---~~-~~~~v~~a~~~~~~~---~-~~----~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~  101 (393)
T 1vjo_A           34 SRLLLGPGP---SN-AHPSVLQAMNVSPVG---H-LD----PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT  101 (393)
T ss_dssp             CCEECSSSC---CC-CCHHHHHHHSSCCCC---T-TS----HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred             cceeccCCC---CC-CCHHHHHHHhccccc---c-cC----HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence            456665442   22 568888877665542   0 00    113467889999999999975 3  55568889999999


Q ss_pred             hhhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++++.++||.|++..+.|.+  +...++..|.+++.++.     .|+++|++.+++.  +       +++|+++++++++
T Consensus       102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~-------~~~v~~~~~~npt  172 (393)
T 1vjo_A          102 IANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH--R-------PAILALVHAETST  172 (393)
T ss_dssp             HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH--C-------CSEEEEESEETTT
T ss_pred             HHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC--C-------ceEEEEeccCCCc
Confidence            99999999999998888888  77888888988888873     5788998888652  1       5688889999999


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQR  336 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~  336 (483)
                      |.+.|+++|+++|++||+++|+||+|++|...         ..+...++|++++|++|++++.|  |++++++++++.++
T Consensus       173 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~---------~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~  243 (393)
T 1vjo_A          173 GARQPLEGVGELCREFGTLLLVDTVTSLGGVP---------IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQ  243 (393)
T ss_dssp             TEECCCTTHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHH
T ss_pred             ceeccHHHHHHHHHHcCCEEEEECCccccCcC---------CcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHh
Confidence            99999999999999999999999999965321         12222345999999999997544  89999999888774


Q ss_pred             hc---CCce--------------eecC-CCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567          337 LS---SSGY--------------VFSA-SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP  396 (483)
Q Consensus       337 ~~---~~~~--------------~fs~-~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~  396 (483)
                      ..   ..++              .+.. +.++..++++.++++.+.+  .++++++++++.+++.+.|+++ |+++..+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  322 (393)
T 1vjo_A          244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEK  322 (393)
T ss_dssp             TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG
T ss_pred             ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCc
Confidence            32   1111              2222 5678888888888987643  2468889999999999999987 88776442


Q ss_pred             C---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHH
Q 011567          397 E---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLK  472 (483)
Q Consensus       397 ~---~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~  472 (483)
                      .   ..++.+.++...     +   ..++++.++++.||.+.++..+..     +..+|+++ +...+++++++++++|+
T Consensus       323 ~~~~~~~~~~~~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~~~~~~~~~i~~~~~~l~  389 (393)
T 1vjo_A          323 EYRLPTLTTVCIPDGV-----D---GKAVARRLLNEHNIEVGGGLGELA-----GKVWRVGLMGFNSRKESVDQLIPALE  389 (393)
T ss_dssp             GGBCSSEEEEECCTTC-----C---HHHHHHHHHHHHCEECEECCGGGT-----TTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred             cccCCcEEEEEcCCCC-----C---HHHHHHHHHhhCCEEEecCccccC-----CCEEEEeCCccCChHHHHHHHHHHHH
Confidence            2   357777763211     1   235677655544999987654321     34599995 45667888999999999


Q ss_pred             HHH
Q 011567          473 RIS  475 (483)
Q Consensus       473 ~~~  475 (483)
                      +++
T Consensus       390 ~~l  392 (393)
T 1vjo_A          390 QVL  392 (393)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=3.8e-27  Score=234.28  Aligned_cols=330  Identities=14%  Similarity=0.114  Sum_probs=232.6

Q ss_pred             cCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEE
Q 011567           98 SAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSI  173 (483)
Q Consensus        98 ~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i  173 (483)
                      .+.|.+++ .+|+++|||+++ ++++  .+|++.+++.+++..+.        .|+... ..++++++|+++|.+  +.+
T Consensus         3 ~~~g~~~~~~~g~~~id~~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y~~~~-~~~lr~~la~~~~~~~~~i~   71 (350)
T 3fkd_A            3 FGHGDEGITPLSSEIVNFSTTVWTDG--DKDHLEKHLVENLNCIR--------HYPEPD-AGTLRQMLAKRNSVDNNAIL   71 (350)
T ss_dssp             -------------CCEECSCCSCCCS--CCHHHHHHHHHTGGGGG--------SCCCTT-CHHHHHHHHHHTTCCGGGEE
T ss_pred             ccccchHhhhccccEEEccCCCCCCC--CCHHHHHHHHHhHhHHh--------cCCCCc-HHHHHHHHHHHhCcCHHHEE
Confidence            45677777 799999999998 5555  57999999988874421        122222 268999999999964  566


Q ss_pred             EecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          174 LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-NDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       174 ~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++++|++++..+++++.  ||.|+++.+.|.++...++..|.+++.++. ++.+.+..      .       ++++|+++
T Consensus        72 ~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~------~-------~~~~v~i~  136 (350)
T 3fkd_A           72 VTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF------S-------NMDFCWLC  136 (350)
T ss_dssp             EESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC------T-------TCSEEEEE
T ss_pred             EcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc------C-------CCCEEEEe
Confidence            66888899999999888  899999999999999999999999999987 54333321      1       25677778


Q ss_pred             cccCCCCCccChHHHHHHHHHcC-cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYR-FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS  328 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~-~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~  328 (483)
                      .+++++|.+.|++++.++++.++ .++|+||+|+.+..  .+.......+  ..+.+++++|++|++|..|   ||++++
T Consensus       137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~--~~~~~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~  212 (350)
T 3fkd_A          137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTT--EEVIRPADIK--GRKNLVMVYSFSHAYGIPGLRIGYIVAN  212 (350)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCS--SCCCCGGGGT--TCSSEEEEEESHHHHSCGGGCCEEEECC
T ss_pred             CCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhcc--CcchhhHHhh--cCCCEEEEecCchhccCcchheEeEEeC
Confidence            88999999999999999999886 79999999986433  2332222222  2344788999999998555   999999


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      +++++.++.....    .+.+++.++++.++++......+..++..++.+++.+.|++++++.+.+ +.++++++.++..
T Consensus       213 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~  287 (350)
T 3fkd_A          213 KDFMKRVAAFSTP----WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHP-SGTTFFLLRLKKG  287 (350)
T ss_dssp             HHHHHHHHTTCCT----TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECC-CSSSEEEEEESSS
T ss_pred             HHHHHHHHHhCCC----CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECC-CCCcEEEEECCCC
Confidence            9999988765433    2457888888888887544222233444488899999998888888763 4677888887532


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                               ...++++.+++++||.+.++..+..   ..+..+||+++   +++|+++++++|+++.++
T Consensus       288 ---------~~~~l~~~L~~~~gi~v~~g~~f~~---~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          288 ---------TAAELKKYMLEEYNMLIRDASNFRG---LDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             ---------CHHHHHHHHHHTTCEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             ---------CHHHHHHHHHHHCCEEEEeCccCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence                     1335677666547999998754321   01245999985   889999999998887643

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.96  E-value=1.9e-27  Score=238.89  Aligned_cols=335  Identities=15%  Similarity=0.117  Sum_probs=234.0

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc--cChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY--GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI  186 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~--g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai  186 (483)
                      |+|++++   +. .+|.+.+++.+++.+...+. .....+  +..+...++++++++++|.+  +.+++++|++|+..++
T Consensus         3 yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~   77 (382)
T 4eb5_A            3 YFDYTSA---KP-VDERILEAMLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAI   77 (382)
T ss_dssp             BCBTTTC---CC-CCHHHHHHHHHHHHTSCCCT-TCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHH
T ss_pred             eeccCCC---CC-CCHHHHHHHHHHHHhccCCC-CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHH
Confidence            6777665   33 68999999999998632111 111111  23467899999999999976  4556688899999999


Q ss_pred             hhhc----cCCcEEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          187 PCFC----KKGDLIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       187 ~~~~----~~gdiI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      .++.    ++||.|+++.+.|.++...+..   .|.+++.++.+     |+++|++.+++          ++++|+++++
T Consensus        78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~  147 (382)
T 4eb5_A           78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----------DTILVSVQHA  147 (382)
T ss_dssp             HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEEEECCSB
T ss_pred             HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC----------CCeEEEEecc
Confidence            9987    8999999999999888776653   57888888763     67777766632          2678999999


Q ss_pred             cCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH-H
Q 011567          255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV-V  332 (483)
Q Consensus       255 ~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~-~  332 (483)
                      ++++|.+.|+++|.++|++||++ |+||+|++|...   .      ++...++|++++|++|.+|+.| |+++.+++. +
T Consensus       148 ~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~---~------~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~l  217 (382)
T 4eb5_A          148 NNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIE---V------DVEKIGADMLTISSNDIYGPKGVGALWIRKEAKL  217 (382)
T ss_dssp             CTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBC---C------CHHHHTCSEEEEETGGGTCCSSCEEEEEETTCCC
T ss_pred             CCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcc---c------CccccCCCEEEeehHHhcCCCceEEEEEcccccc
Confidence            99999999999999999999999 999999865321   1      1110134899999999988755 787776653 1


Q ss_pred             HHHHhcC-C-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEec
Q 011567          333 DHQRLSS-S-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILE  406 (483)
Q Consensus       333 ~~~~~~~-~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~~~i~~l~l~  406 (483)
                      ....... . ......+.++..++++.++++.+++ .++++++++++.+++.+.|++++++.+..+.   .+.++.+.++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T 4eb5_A          218 QPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS  297 (382)
T ss_dssp             CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET
T ss_pred             CceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC
Confidence            1110000 0 0011224466666666677776653 2467888899999999999988788776442   1557777774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CC-----CCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CR-----LPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~-----~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ..      +   ..++.+.+. ++||.+.++..+....         ..     .+..+|++++..+|++|+++++++|+
T Consensus       298 ~~------~---~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (382)
T 4eb5_A          298 YI------E---GESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP  367 (382)
T ss_dssp             TS------C---HHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             Cc------C---HHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            21      1   224666554 4599998764321100         00     02459999998899999999999999


Q ss_pred             HHHHHHHh
Q 011567          473 RISAVVLR  480 (483)
Q Consensus       473 ~~~~~~~~  480 (483)
                      ++++++.+
T Consensus       368 ~~~~~~~~  375 (382)
T 4eb5_A          368 GVIERLRS  375 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887643

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.96  E-value=2.1e-27  Score=240.23  Aligned_cols=334  Identities=14%  Similarity=0.151  Sum_probs=232.4

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhC----CCCEEEecccHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g----~e~~i~~~sG~~a  181 (483)
                      +|+++|||++++. .+..+|.+.+++.+++++.+.. ..+.....|..++...+++.+.+.+|    .++.+++++|+++
T Consensus        33 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a  111 (398)
T 3ele_A           33 GKENVYDFSIGNP-SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS  111 (398)
T ss_dssp             CGGGCEECCSCCC-CSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred             CCCCeEEeecCCC-CCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence            3568999999844 3337899999999998873210 00111123444556666666666555    2356666788999


Q ss_pred             HHhhhhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +..++++++++| |.|+++.+.|.++...++..|.+++.++.+      |+++|++.+++          .+++|+++.+
T Consensus       112 l~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p  181 (398)
T 3ele_A          112 LSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA----------HTRGVIINSP  181 (398)
T ss_dssp             HHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT----------TEEEEEECSS
T ss_pred             HHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc----------CCCEEEEcCC
Confidence            999999999999 999999999999999999999999988865      67777766532          2677777788


Q ss_pred             cCCCCCccC---hHHHHHHHHH------cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---
Q 011567          255 YQNSGQIAP---LDELIRLKEK------YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---  322 (483)
Q Consensus       255 ~~~~G~i~~---L~~l~~l~~k------~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---  322 (483)
                      ++++|.+.|   +++|+++|++      ||+++|+||+|+.+.++  |.......+.  .+.+++++|+||++|..|   
T Consensus       182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~  257 (398)
T 3ele_A          182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKY--YDNTLVCYSYSKSLSLPGERI  257 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCT--TCCCCCGGGT--CSSEEEEEESTTTSSCTTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccC--CCCcCChHhh--cCCeEEEEehhhcCCCcccee
Confidence            899999999   7888899999      99999999999876553  2222211222  234788999999998666   


Q ss_pred             ceeeccHHHHH------HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567          323 GFCTGSARVVD------HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP  396 (483)
Q Consensus       323 G~i~~~~~~~~------~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~  396 (483)
                      ||+++++++++      .+....... ...+.++...+++.+.++   .. ..+++++++.+++.+.|+++ ++.+..+.
T Consensus       258 G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~---~~-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  331 (398)
T 3ele_A          258 GYVLVPDEVYDKAELYAAVCGAGRAL-GYVCAPSLFQKMIVKCQG---AT-GDINAYKENRDLLYEGLTRI-GYHCFKPD  331 (398)
T ss_dssp             EEEECCTTSTTHHHHHHHHHHHHHHT-TCCCSCHHHHHHHTTCTT---CC-CCHHHHHHHHHHHHHHHHHH-TCCEECCS
T ss_pred             EEEEEcchhhhHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHhc---CH-HHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence            99988876432      222111110 011335555555444332   22 25778889999999999886 77777555


Q ss_pred             CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          397 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       397 ~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .+.++++.++..      +   ..++++. |.++||.+.++..+..     +..+||+++  +|+++|++++++|+++++
T Consensus       332 ~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~l~  394 (398)
T 3ele_A          332 GAFYMFVKALED------D---SNAFCEK-AKEEDVLIVAADGFGC-----PGWVRISYC--VDREMIKHSMPAFEKIYK  394 (398)
T ss_dssp             BSSEEEEECSSS------C---HHHHHHH-HHTTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCC------C---HHHHHHH-HHHCCEEEeCccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            555577776421      1   2356664 4567999988754432     345999985  799999999999999987


Q ss_pred             HH
Q 011567          477 VV  478 (483)
Q Consensus       477 ~~  478 (483)
                      ++
T Consensus       395 ~~  396 (398)
T 3ele_A          395 KY  396 (398)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.96  E-value=9.3e-27  Score=234.74  Aligned_cols=333  Identities=19%  Similarity=0.193  Sum_probs=230.9

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTMF  183 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~~  183 (483)
                      |+.++||+.+++ .+..++.+.+++.+.++....++   ....|..++...+++.+.+..|.    ++.+++++|++++.
T Consensus        30 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y---~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~  105 (385)
T 1b5p_A           30 GVDLVALTAGEP-DFDTPEHVKEAARRALAQGKTKY---APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (385)
T ss_dssp             TCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSC---CCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             CCCEEEecCCCC-CCCCCHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence            456899998854 33346889999998887521111   11223344444444444444452    35666688889999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      .+++++.++||.|+++.+.|..+...++..|.+++.++.+       |+++|++.+++          ++++|++..++|
T Consensus       106 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p~N  175 (385)
T 1b5p_A          106 NLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP----------RTKALVVNSPNN  175 (385)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT----------TEEEEEEESSCT
T ss_pred             HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC----------CCEEEEEeCCCC
Confidence            9999999999999999999999988888899998888753       45566554422          256667767788


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      ++|.+.|   +++|+++|++||+++|+||+|+.+.++.   .......+.+ +.+++++|+||++|..|   ||++++++
T Consensus       176 PtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~~  251 (385)
T 1b5p_A          176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG---EHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPKE  251 (385)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC---CCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCHH
Confidence            9999987   8999999999999999999998765532   1112223333 55899999999998655   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV----LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~----l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      +++.++.....+.  .+.++....++.++++.    .+..++.+++++++.+++.+.|+++ |+.+..+..+.++++.+.
T Consensus       252 ~~~~l~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  328 (385)
T 1b5p_A          252 VIKAMASVSRQST--TSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS  328 (385)
T ss_dssp             HHHHHHHHHHTTT--CSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECT
T ss_pred             HHHHHHHHHhhcc--CCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecC
Confidence            8887754322222  23456666666667753    2222457788888899999999887 877765545566676664


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .. +.   +   ..++++.++ ++||.+.++.....     +..+||++.  +++++++++++.|+++++
T Consensus       329 ~~-~~---~---~~~l~~~l~-~~gv~v~~g~~f~~-----~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          329 PI-AP---D---EVRAAERLL-EAGVAVVPGTDFAA-----FGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             TT-CS---S---HHHHHHHHH-HTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             CC-CC---C---HHHHHHHHH-HCCeEEecccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            21 10   1   235677666 56999988654321     345999986  799999999999987754

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.96  E-value=2e-27  Score=240.91  Aligned_cols=338  Identities=16%  Similarity=0.176  Sum_probs=237.1

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHH----HHHHHHhhhCCCCEEE-ecccHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLD----CEARIAKFLGTPDSIL-YSYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~----l~~~La~~~g~e~~i~-~~sG~~a~  182 (483)
                      +.++|+++++++    +|++.+++.+++. .++.+.++++.+.|.. ...+    +++++++++|.+...+ +++|++|+
T Consensus        24 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~   98 (405)
T 2vi8_A           24 AKIELIASENFV----SRAVMEAQGSVLTNKYAEGYPGRRYYGGCE-YVDIVEELARERAKQLFGAEHANVQPHSGAQAN   98 (405)
T ss_dssp             HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred             cceeeccCcccC----CHHHHHHHHHHhhcccccCCCCccccccch-HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence            357888887776    7999999999986 5555544444333332 2344    4479999999887655 58999999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHh-H--hhhcCC--eEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQN-G--LYLSRS--TVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~-g--~~~s~~--~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ..+++++.++||.|++..++|.++.. +  +...|.  +++.++.      .|+++|++.+++..         +++|++
T Consensus        99 ~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~v~~  169 (405)
T 2vi8_A           99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR---------PKLIVA  169 (405)
T ss_dssp             HHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC---------CSEEEE
T ss_pred             HHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC---------CeEEEE
Confidence            99999999999999999999987653 2  123333  5666653      37888888876421         345666


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~  330 (483)
                      .+.  +.|...++++|+++|++||+++|+||+|++|..+.   +... .++  ..+|++++|++|+++ +.|||++++++
T Consensus       170 ~~~--~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~---~~~~-~~~--~~~di~~~s~sK~~~g~~gG~~~~~~~  241 (405)
T 2vi8_A          170 AAA--AYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHP-NPV--PYAHFVTTTTHKTLRGPRGGMILCQEQ  241 (405)
T ss_dssp             CCS--SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSC-CST--TTCSEEEEESSSTTCCCSCEEEEECHH
T ss_pred             eCC--CCCccCCHHHHHHHHHHcCCEEEEEcccccccccc---CcCC-Ccc--ccCCEEEEeccccCCCCCCeEEEEcHH
Confidence            432  23666789999999999999999999999776542   2211 222  235899999999997 77899999998


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEK  407 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~  407 (483)
                      +++.++.....+.++ +.++..++++.++++.+..  .+++.++++++.+++.+.|+++ |+++..+ ..++++++.++.
T Consensus       242 ~~~~l~~~~~~~~~~-~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  319 (405)
T 2vi8_A          242 FAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP  319 (405)
T ss_dssp             HHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred             HHHHHHhhhcccccC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC
Confidence            888776543344333 3456667776778876543  2468889999999999999987 8887653 357888888753


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSA----AHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ...    +   ..++.+.+ .++||.+.+...+.- .....+..+|++++.    .+|++|+++++++|+++++++
T Consensus       320 ~~~----~---~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          320 QQL----T---GKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             GTC----C---HHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             CCC----C---HHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence            110    1   23455554 456999987643200 000013459999986    689999999999999987654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=4.4e-27  Score=239.09  Aligned_cols=317  Identities=13%  Similarity=0.110  Sum_probs=229.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcCCc
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADEGV  202 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~~~  202 (483)
                      +.+.+++.+++.+...+...    ....+...++++++++++|.+.  .+ +.++|++++..++.++.++||.|++..+.
T Consensus        20 ~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~   95 (416)
T 3isl_A           20 VEVDPRVLRVMSTPVVGQFD----PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYG   95 (416)
T ss_dssp             CCCCHHHHHHTTSCCCCTTS----HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             cCcCHHHHHHhcccCCCCcc----HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            34455566666653332111    1224568899999999999764  33 44778899999999999999999988888


Q ss_pred             hhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC
Q 011567          203 HWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR  275 (483)
Q Consensus       203 h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~  275 (483)
                      |.+  +...++..|.+++.++.+     |+++|++.+++.         ++++|+++++++++|.+.|+++|.++|++||
T Consensus        96 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~  166 (416)
T 3isl_A           96 RFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKV---------KPKIVAMVHGETSTGRIHPLKAIGEACRTED  166 (416)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCHHHHHHHHHTT
T ss_pred             cccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhC---------CCcEEEEEccCCCCceecCHHHHHHHHHHcC
Confidence            877  666778889998888765     888998888642         2578889999999999999999999999999


Q ss_pred             cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcC--------------
Q 011567          276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS--------------  339 (483)
Q Consensus       276 ~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~--------------  339 (483)
                      +++|+||+|++|.+.         ++....++|++++|++|++ |+.| |+++.++++++.++...              
T Consensus       167 ~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~  237 (416)
T 3isl_A          167 ALFIVDAVATIGGCE---------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAA  237 (416)
T ss_dssp             CEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC---------------
T ss_pred             CEEEEECCccccCCC---------cchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchh
Confidence            999999999876432         1222234599999999985 4444 88889999888775321              


Q ss_pred             ---------------------Cceee-cCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          340 ---------------------SGYVF-SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       340 ---------------------~~~~f-s~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                                           ....+ ..+.+...++++.++++.+.+  .+++.++++++.+++.+.|++. |+++..+
T Consensus       238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  316 (416)
T 3isl_A          238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGD  316 (416)
T ss_dssp             ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred             ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccC
Confidence                                 01112 234567777777778877654  2578899999999999999985 8877644


Q ss_pred             CC---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH-HHHHHHHH
Q 011567          396 PE---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD-LVKACESL  471 (483)
Q Consensus       396 ~~---~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed-i~~~~~~l  471 (483)
                      ..   +.++.+.++...     +   ..++.+.++++.||.+.++..+.     .+..+|++++...|++| +++++++|
T Consensus       317 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l  383 (416)
T 3isl_A          317 DSCKMPVVTCVEIPGGI-----D---GESVRDMLLAQFGIEIASSFGPL-----AGKIWRIGTMGYSCRKENVLFVLAGL  383 (416)
T ss_dssp             GGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEECBCCCSTT-----TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             ccccCCcEEEEeCCCCC-----C---HHHHHHHHHHhCCEEEecCCCCC-----CCCEEEEecccCCCcHHHHHHHHHHH
Confidence            32   567778774211     1   23567766555599998654221     12459999977677777 99999999


Q ss_pred             HHHHHHH
Q 011567          472 KRISAVV  478 (483)
Q Consensus       472 ~~~~~~~  478 (483)
                      +++++++
T Consensus       384 ~~~~~~~  390 (416)
T 3isl_A          384 EAVLLRH  390 (416)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.93  E-value=6.2e-31  Score=265.94  Aligned_cols=348  Identities=11%  Similarity=0.051  Sum_probs=244.6

Q ss_pred             ccccCCCCeEE-ECCe--eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----
Q 011567           95 VLESAAGPHTI-ISGK--EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----  167 (483)
Q Consensus        95 ~i~~~~g~~~~-~~G~--~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----  167 (483)
                      +..+++|+++| .+|+  +++||.++++ ++..+|.+.+++.+++++...       .|+  +...++++.+++++    
T Consensus        14 ~~~~~~g~~~~d~~g~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~--~~~~~l~~~la~~l~~~~   83 (392)
T 3b1d_A           14 PNRLSHHTYKWKETETDPQLLPAWIADM-DFEVMPEVKQAIHDYAEQLVY-------GYT--YASDELLQAVLDWEKSEH   83 (392)
Confidence            34568999999 7898  9999998865 665789999999998865211       122  12556677777654    


Q ss_pred             C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHh
Q 011567          168 G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERV  235 (483)
Q Consensus       168 g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~  235 (483)
                      |    .++.+++++|++++..+++++.++||.|++..+.|.++...+...|.+++.++.+        |+++|++.+++.
T Consensus        84 g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~  163 (392)
T 3b1d_A           84 QYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN  163 (392)
Confidence            4    2345566778899999999999999999999999988888888888887776652        566666666421


Q ss_pred             hhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEE
Q 011567          236 TADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIV  310 (483)
Q Consensus       236 ~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~  310 (483)
                               ++++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++  |.+....+.+.+  .+.+++
T Consensus       164 ---------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~  232 (392)
T 3b1d_A          164 ---------DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALV  232 (392)
Confidence                     2456777788888999877   899999999999999999999876543  333333333332  345688


Q ss_pred             EccccccccCCC---ceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhc
Q 011567          311 TAAMGHALATEG---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       311 ~~s~~K~lg~~G---G~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++|+||++|..|   ||+++++ ++++.++.....+.++ +.+++.++++.++++..++ ..+.++.++++.+.+.+.|+
T Consensus       233 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~  311 (392)
T 3b1d_A          233 LSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHH-EVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFA  311 (392)
Confidence            899999998556   8888764 5888776654444333 2467777777777764222 24567778888888988888


Q ss_pred             c-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH
Q 011567          386 D-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       386 ~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi  464 (483)
                      + ++++.+..+..+.++++.++..       .....++++.+++++||++.+...+..   ..+..+|+++..  +++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~~--~~e~i  379 (392)
T 3b1d_A          312 QEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGS---EGELHARLNIAA--PKSLV  379 (392)
Confidence            7 6677766443444445666321       011335677665567999987654321   012349998764  68999


Q ss_pred             HHHHHHHHHHHH
Q 011567          465 VKACESLKRISA  476 (483)
Q Consensus       465 ~~~~~~l~~~~~  476 (483)
                      ++++++|+++++
T Consensus       380 ~~~l~~l~~~l~  391 (392)
T 3b1d_A          380 EEICKRIVCCLP  391 (392)
Confidence            999999988764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=1.1e-26  Score=235.61  Aligned_cols=315  Identities=15%  Similarity=0.147  Sum_probs=231.1

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEe-cccHHHHHhhhhhhccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILY-SYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      .+|++.+++.+++    .+..    .....+...++++++++++|.+.  .+++ ++|++|+..+++++.++||.|++..
T Consensus        24 ~~~~v~~a~~~~~----~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~   95 (411)
T 3nnk_A           24 ADPRVLRAMSSQL----IGQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV   95 (411)
T ss_dssp             CCHHHHHHHTSCC----CCTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCHHHHHHhhccc----cccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence            3577777765443    1111    11123567899999999999753  2444 6779999999999999999999998


Q ss_pred             CchhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          201 GVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       201 ~~h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      +.|.+  +...+...|.+++.++.+     |+++|++.+++.         ++++|+++++++++|.+.|+++|+++|++
T Consensus        96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~  166 (411)
T 3nnk_A           96 FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRI---------RPRLLLTVQGDTSTTMLQPLAELGEICRR  166 (411)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred             CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhC---------CCeEEEEeCCCCCcceeccHHHHHHHHHH
Confidence            88877  777788889998888765     888998888652         26788888889999999999999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcC------------
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS------------  339 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~------------  339 (483)
                      ||+++|+||++++|...         ++....++|++++|++|++ |+.| |+++.++++++.++...            
T Consensus       167 ~~~~li~Dea~~~~~~~---------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  237 (411)
T 3nnk_A          167 YDALFYTDATASLGGNP---------LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHR  237 (411)
T ss_dssp             HTCEEEEECTTTBTTBC---------CCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCC
T ss_pred             cCCEEEEECCcccCCcc---------cchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccc
Confidence            99999999999875432         1222234689999999986 4444 88999999988776432            


Q ss_pred             ----------------------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567          340 ----------------------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN  395 (483)
Q Consensus       340 ----------------------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~  395 (483)
                                            .......+.++..++++.++++.+.+.  +++.++++++.+++.+.|+++ ++.+..+
T Consensus       238 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  316 (411)
T 3nnk_A          238 DGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGD  316 (411)
T ss_dssp             CCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred             cccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCC
Confidence                                  001122345777777777888876542  568889999999999999986 7776543


Q ss_pred             C---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHH
Q 011567          396 P---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESL  471 (483)
Q Consensus       396 ~---~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l  471 (483)
                      .   ...++.+.++...     +   ..++.+.++++.||.+.++..+.     .+..+|+++ +..+|++|+++++++|
T Consensus       317 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~~~~~i~~~~~~l  383 (411)
T 3nnk_A          317 LKHKMNNVLGVVIPQGI-----N---GDQARKLMLEDFGIEIGTSFGPL-----HGKVWRIGTMGYNARKDCVMTTLSAL  383 (411)
T ss_dssp             GGGBCSSEEEEECCTTC-----C---HHHHHHHHHHHHSEEEEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             cccccccEEEEECCCCC-----C---HHHHHHHHHHhcCeEEeCccCCC-----CCCEEEEeCccCcCCHHHHHHHHHHH
Confidence            2   2567777774211     1   23566666665599998753221     123599998 7778999999999999


Q ss_pred             HHHHHHH
Q 011567          472 KRISAVV  478 (483)
Q Consensus       472 ~~~~~~~  478 (483)
                      +++++++
T Consensus       384 ~~~l~~~  390 (411)
T 3nnk_A          384 EAVLNYL  390 (411)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.96  E-value=1.4e-27  Score=237.49  Aligned_cols=331  Identities=13%  Similarity=0.131  Sum_probs=229.2

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-EEEecccHHHHHhhhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-SILYSYGLSTMFSAIP  187 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-~i~~~sG~~a~~~ai~  187 (483)
                      ..+|||.+++. ++ .+|++.+++.+++..+       ...|+..+...++++++++++|.+. .+++++|++|+..+++
T Consensus         7 ~~~id~~~~~~-~~-~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~   77 (356)
T 1v72_A            7 PPALGFSSDNI-AG-ASPEVAQALVKHSSGQ-------AGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS   77 (356)
T ss_dssp             CCCCBCSCGGG-CC-CCHHHHHHHHHTTSSC-------CCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHH
T ss_pred             CceEeeccCCc-cC-CCHHHHHHHHhhccCc-------ccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHH
Confidence            46899998755 44 6799999998875321       1245666788999999999999655 4666999999999999


Q ss_pred             hhccCCcEEEEcCCchhHHHhH--hhhc--CCeEEEecCC----CHHHHHH-HHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          188 CFCKKGDLIVADEGVHWGIQNG--LYLS--RSTVVYFKHN----DMDSLRN-TLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g--~~~s--~~~v~~~~~~----d~~~Le~-~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ++.++||.|+++.++|++....  +...  |.+++.++.+    |+++|++ .+++....   ...++++|++++++ ++
T Consensus        78 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~---~~~~~~~v~~~~~~-~t  153 (356)
T 1v72_A           78 AMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDV---HTTQPACVSITQAT-EV  153 (356)
T ss_dssp             TSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCT---TSCEEEEEEEESSC-TT
T ss_pred             HhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhh---ccCCceEEEEEcCC-CC
Confidence            9999999999999999988766  7766  8888888765    6778877 66431100   01136788888875 58


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDH  334 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~  334 (483)
                      |.+.|   +++|+++|++||+++|+||+|+.+.....|... ..+++. ...|+++.|++|+.++.| |++++++++++.
T Consensus       154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~  231 (356)
T 1v72_A          154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWK-AGVDALSFGATKNGVLAAEAIVLFNTSLATE  231 (356)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGG-GTCCEEEECCGGGTCSSCEEEEESSGGGHHH
T ss_pred             CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhh-hcCCEEEEecccCCCcCccEEEEECHHHHhh
Confidence            99555   899999999999999999999754321111111 112211 134788889999944445 588888888876


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                      ++....   +.+..+.....++.++++.+++.  .+..++.+++.+++++.|++++|+++..+..++++++.++      
T Consensus       232 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~------  302 (356)
T 1v72_A          232 MSYRRK---RAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------  302 (356)
T ss_dssp             HHHHHH---HTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------
T ss_pred             HHHHhh---ccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC------
Confidence            543210   01111110112223345555432  2457778889999999998877888765667788887762      


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                        +     ++++.+. ++||.+.++.+.       +..+|++++..+|++|+++++++|++++++.
T Consensus       303 --~-----~~~~~l~-~~gi~v~~g~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          303 --S-----AMIDALL-KAGFGFYHDRWG-------PNVVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             --H-----HHHHHHH-HTTCBCBCSSSS-------TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             --H-----HHHHHHH-hcCeEEeccccC-------CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence              1     4666654 569998865421       2459999999999999999999999887664

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=8e-27  Score=234.33  Aligned_cols=311  Identities=15%  Similarity=0.159  Sum_probs=228.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC----EEEecccHHHHHhhhhhhccCCcEEEEc
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD----SILYSYGLSTMFSAIPCFCKKGDLIVAD  199 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~----~i~~~sG~~a~~~ai~~~~~~gdiI~~~  199 (483)
                      .+|++.+++.+++..+    .    .+...+...++++++++++|.+.    .+++++|++++. ++.++.++||.|++.
T Consensus        13 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~   83 (384)
T 3zrp_A           13 IKEDVLVAGLENNVGF----T----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVV   83 (384)
T ss_dssp             CCHHHHHHTTCCSCCT----T----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEE
T ss_pred             CCHHHHHHhhcccccc----c----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEe
Confidence            4577777766554321    0    12234678899999999999764    566688899999 999999999988887


Q ss_pred             CCchhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          200 EGVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       200 ~~~h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      ...|.+  ....+...|.+++.++.+     |+++|++.+++.         ++++|+++++++++|.+.|+++|.++|+
T Consensus        84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~  154 (384)
T 3zrp_A           84 SNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKS---------EYKLVALTHVETSTGVREPVKDVINKIR  154 (384)
T ss_dssp             CSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHS---------CEEEEEEESEETTTTEECCHHHHHHHHG
T ss_pred             cCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhC---------CCcEEEEeCCCCCCceECcHHHHHHHHH
Confidence            777755  334456778888888764     788888888652         2678899999999999999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHH-Hh------------
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQ-RL------------  337 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~-~~------------  337 (483)
                      +||+++|+||+|++|...         .++...++|++++|++|+++ +.| |++++++++++.+ +.            
T Consensus       155 ~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (384)
T 3zrp_A          155 KYVELIVVDGVSSVGAEE---------VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRN  225 (384)
T ss_dssp             GGEEEEEEECTTTTTTSC---------CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHH
T ss_pred             hcCCEEEEECcccccCcc---------ccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHH
Confidence            999999999999876432         22222345999999999995 444 8888998887766 11            


Q ss_pred             cC---------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEE
Q 011567          338 SS---------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVF  402 (483)
Q Consensus       338 ~~---------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~~~i~~  402 (483)
                      ..         ... ..++.++..++++.++++.+.+.  +++.++++++.+++.+.|+++ ++++..+.    .+.+++
T Consensus       226 ~~~~~~~~~~~~~~-~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  303 (384)
T 3zrp_A          226 WLPVMRGAEEGKAA-YFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTG  303 (384)
T ss_dssp             HHHHHHHHHTTCCC-CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEE
T ss_pred             HHHHHHhhcccCCC-cCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEE
Confidence            00         111 11245666777777788876542  568899999999999999987 88776543    356777


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +.+...         ...++.+.+++ +||.+.++.....      ..+|++++..+|++|+++++++|+++++++-
T Consensus       304 ~~~~~~---------~~~~~~~~l~~-~gi~v~~g~~~~~------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          304 VILKVA---------DPQKVLAGTVN-EGVEFAPGVHPAF------KYFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             EECSSS---------CHHHHHHHHHT-TTCCCEECCCTTC------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCCC---------CHHHHHHHHHH-CCEEEecCCCCCc------CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence            777431         12356776554 5999987652211      4599999999999999999999999998753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=7.1e-27  Score=237.72  Aligned_cols=326  Identities=14%  Similarity=0.124  Sum_probs=234.0

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      +|+.|+|+++.   |. .+|.+.+++.+++++ ++......+...+..+...++++++++++|.+  +.++.++|++++.
T Consensus        27 ~~~~yld~~~~---~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~  102 (416)
T 1qz9_A           27 EGVIYLDGNSL---GA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLF  102 (416)
T ss_dssp             TTCEECCTTTS---CC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHH
T ss_pred             CCeEeecCCCc---CC-CcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHH
Confidence            35678887654   44 678999999999975 33211110101133467889999999999975  5556677788888


Q ss_pred             hhhhhhc------cCCc-EEEEcCCchhHHHhHhh----hc--CCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          184 SAIPCFC------KKGD-LIVADEGVHWGIQNGLY----LS--RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       184 ~ai~~~~------~~gd-iI~~~~~~h~s~~~g~~----~s--~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .+++++.      ++|| +|+++..+|.++..++.    ..  |.+++.++.  +++|++.+++          ++++|+
T Consensus       103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~----------~~~~v~  170 (416)
T 1qz9_A          103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQ----------DTAVVM  170 (416)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCST----------TEEEEE
T ss_pred             HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCC----------CceEEE
Confidence            8888775      7887 68888889987665542    23  788888877  7777776632          268999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCC-ceeec
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEG-GFCTG  327 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~G-G~i~~  327 (483)
                      ++++++++|.+.|+++|+++|++||+++|+||+|++|...   ..+ ..+     ++|++++|++|+++  ..+ |++++
T Consensus       171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~-----~~d~~~~s~~K~l~~g~~~~g~l~~  241 (416)
T 1qz9_A          171 LTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---VDL-HQA-----GADYAIGCTYKYLNGGPGSQAFVWV  241 (416)
T ss_dssp             EESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-HHH-----TCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred             EeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC---CCh-hhc-----CCCEEEecCcccCCCCCCCeEEEEE
Confidence            9999999999999999999999999999999999865432   111 112     24899999999973  445 89888


Q ss_pred             cHHHHHHHHhcCCce--------------------ee-cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhh
Q 011567          328 SARVVDHQRLSSSGY--------------------VF-SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGL  384 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~--------------------~f-s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L  384 (483)
                      ++++++.++....++                    .+ .++.++..++++.++++.+.+.  +++.++++++.+++.+.|
T Consensus       242 ~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  321 (416)
T 1qz9_A          242 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV  321 (416)
T ss_dssp             CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            888776554321111                    12 2245777777788889887532  468889999999999999


Q ss_pred             ccC-C--CceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-
Q 011567          385 SDI-H--GLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-  456 (483)
Q Consensus       385 ~~~-~--~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-  456 (483)
                      +++ +  |+.+..+.    .++++++.+.+           ..++.+.++ ++||.+....         +..+|++++ 
T Consensus       322 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~-~~gi~~~~~~---------~~~lRis~~~  380 (416)
T 1qz9_A          322 EQRCAAHELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALI-DRGVIGDYRE---------PRIMRFGFTP  380 (416)
T ss_dssp             HHHHTTSCCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHH-TTTEECEEET---------TTEEEEECCT
T ss_pred             HhhccCCCeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHH-hCCcEeccCC---------CCeEEEeCcc
Confidence            875 5  78776542    36777777631           235666554 5699875321         245999997 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..+|++|+++++++|++++++.
T Consensus       381 ~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          381 LYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhcc
Confidence            5899999999999999998763

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.96  E-value=9.9e-27  Score=234.67  Aligned_cols=326  Identities=13%  Similarity=0.062  Sum_probs=231.8

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP  187 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~  187 (483)
                      .|+|..+.   +. .+|.+.+++.+.+...       + .+...+...++++.+++++|.+  ..++.++|++++..+++
T Consensus        10 ~yl~~~~~---~~-~~~~v~~a~~~~~~~~-------~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~   77 (392)
T 2z9v_A           10 VITLTAGP---VN-AYPEVLRGLGRTVLYD-------Y-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAA   77 (392)
T ss_dssp             SEECSSSC---CC-CCHHHHHHTTSCCCCT-------T-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHH
T ss_pred             ceeecCCC---cC-CCHHHHHHHhcccccc-------c-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHH
Confidence            46665532   22 5688888776655420       1 1223456789999999999975  45556888999999999


Q ss_pred             hhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          188 CFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      ++.++||.|+++.+.|.+..  ..+...|.+++.++.     .|+++|++.+++. .       ++++|+++++++++|.
T Consensus        78 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~-------~~~~v~~~~~~nptG~  149 (392)
T 2z9v_A           78 SLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH-P-------EITVVSVCHHDTPSGT  149 (392)
T ss_dssp             HHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC-T-------TCCEEEEESEEGGGTE
T ss_pred             HhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC-C-------CCcEEEEeccCCCCce
Confidence            99999998888888887653  223446778877764     3788888888642 1       2578888999999999


Q ss_pred             ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhc
Q 011567          261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLS  338 (483)
Q Consensus       261 i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~  338 (483)
                      +.|+++|.++|++||+++|+||+|++|....         ++...++|++++|++|+++ +.| |++++++++++.++..
T Consensus       150 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---------~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~  220 (392)
T 2z9v_A          150 INPIDAIGALVSAHGAYLIVDAVSSFGGMKT---------HPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKAN  220 (392)
T ss_dssp             ECCHHHHHHHHHHTTCEEEEECTTTBTTBSC---------CGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTC
T ss_pred             eccHHHHHHHHHHcCCeEEEEcccccCCccc---------ccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhc
Confidence            9999999999999999999999998654321         1111134899999999775 445 8999999988877531


Q ss_pred             C------------------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeec-CC-
Q 011567          339 S------------------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIAS-NP-  396 (483)
Q Consensus       339 ~------------------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~-  396 (483)
                      .                  ....+.++.++..++++.++++.+.+.  ++..++++++.+++++.|+++ |+++.. +. 
T Consensus       221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  299 (392)
T 2z9v_A          221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDS  299 (392)
T ss_dssp             TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGG
T ss_pred             cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCcc
Confidence            1                  011223445677777777788776542  467888999999999999887 877764 21 


Q ss_pred             --CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHH
Q 011567          397 --ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKR  473 (483)
Q Consensus       397 --~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~  473 (483)
                        .++++++.++...     +   ..++.+.++++.||.+.+...+.     .+..+|+++.. .+|++|+++++++|++
T Consensus       300 ~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gi~v~~g~~~~-----~~~~lRi~~~~~~~~~~~i~~~~~~l~~  366 (392)
T 2z9v_A          300 IASPTTTAVRTPDGV-----D---EKALRQAARARYGVVFSSGRGET-----LGKLTRIGHMGPTAQPIYAIAALTALGG  366 (392)
T ss_dssp             GBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEECEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             ccCCceEEEECCCCC-----C---HHHHHHHHHhcCCEEEecCCCCC-----CCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence              4677888774211     1   23566665544499998764321     13459999644 7999999999999999


Q ss_pred             HHHHH
Q 011567          474 ISAVV  478 (483)
Q Consensus       474 ~~~~~  478 (483)
                      +++++
T Consensus       367 ~~~~~  371 (392)
T 2z9v_A          367 AMNAA  371 (392)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.95  E-value=3.3e-26  Score=233.96  Aligned_cols=336  Identities=12%  Similarity=0.116  Sum_probs=229.3

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHH---------------HhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-----
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSAL---------------EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-----  168 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l---------------~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-----  168 (483)
                      .++||.++ |.+++   |.+.+++.++.               ..|+.           ..-..++++.++++++     
T Consensus        37 ~~i~l~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~g~~~lr~~la~~~~~~~g~  102 (428)
T 1iay_A           37 GVIQMGLAENQLCL---DLIEDWIKRNPKGSICSEGIKSFKAIANFQD-----------YHGLPEFRKAIAKFMEKTRGG  102 (428)
T ss_dssp             SBEECSSCCCCSSH---HHHHHHHHHCTTSSTTC----CHHHHHHCCC-----------TTCCHHHHHHHHHHHHHHTTT
T ss_pred             ceeeeccccchhhH---HHHHHHHHhccccccccccccccHhhcCCCC-----------CCCcHHHHHHHHHHHHHhcCC
Confidence            46899876 66654   67777776432               22321           1113567777777765     


Q ss_pred             -----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC-------CHHHHHHHHHHh
Q 011567          169 -----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN-------DMDSLRNTLERV  235 (483)
Q Consensus       169 -----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~-------d~~~Le~~l~~~  235 (483)
                           .+..++.++|++++..++++++++||.|++..+.|.++..++. ..|.+++.++.+       |+++|++.+++.
T Consensus       103 ~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  182 (428)
T 1iay_A          103 RVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENA  182 (428)
T ss_dssp             CSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred             CCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence                 2345555777799999999999999999999998888776554 678888888753       678888887653


Q ss_pred             hhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC---------CC
Q 011567          236 TADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG---------VP  303 (483)
Q Consensus       236 ~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~---------v~  303 (483)
                      ...    ..++++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+.++.  .+......         +.
T Consensus       183 ~~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~~~~~  256 (428)
T 1iay_A          183 QKS----NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT--PQFVSIAEILDEQEMTYCN  256 (428)
T ss_dssp             HHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS--SCCCCHHHHHTSGGGTTSC
T ss_pred             Hhc----CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCC--CCccCHHHhccccccccCC
Confidence            211    113567777777888999999   9999999999999999999998765532  22211111         11


Q ss_pred             CCceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh----cCcHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----ENPDLITKLKK  375 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~----~~~~~~~~l~~  375 (483)
                      ++ ..+++.|+||++|..|   ||+++ ++++++.++.....  +  +.++..++++.++++...    ..++.++++++
T Consensus       257 ~d-~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  331 (428)
T 1iay_A          257 KD-LVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--G--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK  331 (428)
T ss_dssp             TT-SEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--S--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CC-cEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--c--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            21 1277899999998666   88887 67888877643222  2  346666766766665322    12357788889


Q ss_pred             HHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567          376 NTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV  455 (483)
Q Consensus       376 ~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~  455 (483)
                      +.+++.+.|+++ |+++..+..+.++++.+......  .+.....++.+.++++.||.+.+.......   .+..+||++
T Consensus       332 ~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~---~~~~iRis~  405 (428)
T 1iay_A          332 RHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRE--STFDSEMSLWRVIINDVKLNVSPGSSFECQ---EPGWFRVCF  405 (428)
T ss_dssp             HHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSS--SSHHHHHHHHHHHHHTSCEECEEGGGGTCS---SSSEEEEEC
T ss_pred             HHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCC--CchhHHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEE
Confidence            999999999887 77776444677888887532100  011223467777666559999886543211   024599999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Q 011567          456 SAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       456 ~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      + .+|++++++++++|++++++
T Consensus       406 ~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          406 A-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             S-SSCHHHHHHHHHHHHHHHHT
T ss_pred             e-cCCHHHHHHHHHHHHHHHhc
Confidence            8 58999999999999988753

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.95  E-value=1.2e-26  Score=233.76  Aligned_cols=317  Identities=13%  Similarity=0.145  Sum_probs=227.9

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      .+|++.+++.+++..    ..    .....+...++++++++++|.+  + .++.++|++|+..+++++.++||.|++..
T Consensus        34 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~  105 (393)
T 3kgw_A           34 LAPRVLAAGSLRMIG----HM----QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGT  105 (393)
T ss_dssp             CCHHHHHHTTCCCCC----TT----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCHHHHHHhcccccC----cc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEe
Confidence            457777776553211    10    1122457789999999999965  2 44558999999999999999999888877


Q ss_pred             CchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          201 GVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       201 ~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      ..|++  ....+...|.+++.++.     .|+++|++.+++.         ++++|+++++++++|.+.|+++|+++|++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~  176 (393)
T 3kgw_A          106 NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQH---------KPVLLFLVHGESSTGVVQPLDGFGELCHR  176 (393)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred             CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC---------CCcEEEEeccCCcchhhccHHHHHHHHHH
Confidence            66653  35666777888877763     3788898888652         25688888889999999999999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCce---------
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSGY---------  342 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~~---------  342 (483)
                      ||+++|+||+|++|...         +++...++|+++.|++|+++ +.| |++++++++++.+.....++         
T Consensus       177 ~~~~li~De~~~~g~~~---------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (393)
T 3kgw_A          177 YQCLLLVDSVASLGGVP---------IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITY  247 (393)
T ss_dssp             TTCEEEEECTTTTTTSC---------CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH
T ss_pred             cCCEEEEECCccccCcc---------cchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHH
Confidence            99999999999865321         22222345899999999884 444 88999999988876432111         


Q ss_pred             ------------eecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEEEE
Q 011567          343 ------------VFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVFLI  404 (483)
Q Consensus       343 ------------~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~~~i~~l~  404 (483)
                                  .+..+.++..++++.++++.+.+.  +++.++++++.+++.+.|+++ ++++....    ...++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  326 (393)
T 3kgw_A          248 LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVT  326 (393)
T ss_dssp             HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEE
T ss_pred             HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEe
Confidence                        122345777777777888876542  568899999999999999987 77765321    23455676


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +....     +   ..++.+.++++.||.+.++..+..     +..+|+++ +..+|++|+++++++|+++++++.+
T Consensus       327 ~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          327 VPAGY-----N---WRDIVSYVLDHFSIEISGGLGPTE-----ERVLRIGLLGYNATTENVDRVAEALREALQHCPK  390 (393)
T ss_dssp             CCTTB-----C---HHHHHHHHHHHHCEECBCCCGGGT-----TTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred             CCCCC-----C---HHHHHHHHHHhCCEEEeCCcccCC-----CCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence            64211     1   235677666554999987643221     24599998 6667999999999999999987644

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.95  E-value=4.4e-27  Score=233.37  Aligned_cols=330  Identities=18%  Similarity=0.221  Sum_probs=224.1

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~  188 (483)
                      .++|||.++....  ..|.+.+++.+...    +    ...|+..+...+|+++|++++|.++.+++++|++|+..++.+
T Consensus         3 ~~~i~~~~~~~~~--p~~~~~~a~~~~~~----~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~   72 (347)
T 1jg8_A            3 HMMIDLRSDTVTK--PTEEMRKAMAQAEV----G----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   72 (347)
T ss_dssp             --CEECSCGGGCC--CCHHHHHHHHTCCC----C----CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred             ceEEEeccccCCC--CCHHHHHHHhcCCC----C----CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHH
Confidence            3678999884432  45777777654321    0    113555567789999999999999999999999999999999


Q ss_pred             hccCCcEEEEcCCchhHHHh---HhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-C
Q 011567          189 FCKKGDLIVADEGVHWGIQN---GLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-G  259 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~---g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G  259 (483)
                      +.++||.|+++.++|.+...   .+...|.+++.+ .+     |+++|++.+++...    ...++++|+++++++++ |
T Consensus        73 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~----~~~~~~~v~~~~~~npt~G  147 (347)
T 1jg8_A           73 HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNI----HFPRTSLIAIENTHNRSGG  147 (347)
T ss_dssp             HCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCT----TSCCEEEEEEESSBTTTTS
T ss_pred             hcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccc----cccCceEEEEeccccccCC
Confidence            99999999999999987654   356678888777 43     67777776643100    00136889999999998 9


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQ  335 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~  335 (483)
                      .+.|   +++|+++|++||+++|+||+|.++.++..|..... +.   ..+|.++.|++|++++ .||++++++++++.+
T Consensus       148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~-~~---~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~  223 (347)
T 1jg8_A          148 RVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE-YA---GYADSVMFCLSKGLCAPVGSVVVGDRDFIERA  223 (347)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH-HH---HTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHH-hc---ccccEEEEecccccCCCceEEEEcCHHHHHHH
Confidence            9887   57899999999999999999865432211221111 11   1236667799999984 455777888887765


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      +.....+..+...++..++++..+++...+   ..++..++.+++.+.|+++ ++.+. .++.++++++.++...  .  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~--~--  295 (347)
T 1jg8_A          224 RKARKMLGGGMRQAGVLAAAGIIALTKMVD---RLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLK--V--  295 (347)
T ss_dssp             HHHHHHHTCCCSSTHHHHHHHHHHHHHSST---THHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSS--S--
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEccccc--C--
Confidence            432111111122345666666666664322   2344456778888888876 76642 2446778888774211  0  


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      +   ..++++.+.+ +||.+.+..         +..+|++++..+|++|+++++++|+++++++
T Consensus       296 ~---~~~~~~~l~~-~gi~v~~~~---------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          296 N---AHGFIEALRN-SGVLANAVS---------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             C---HHHHHHHHHH-HTEECEEEE---------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHH-CCCEEecCC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            1   2356776554 599998642         1349999988899999999999999987653

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.95  E-value=2.8e-27  Score=235.41  Aligned_cols=329  Identities=18%  Similarity=0.165  Sum_probs=229.2

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP  187 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~  187 (483)
                      .+++|.+ ++.|+ .+|.+.+++.+++..|+.       ..|..+...++++.+++++|.+  +.+++++|++|+..+++
T Consensus        14 ~~i~l~~-~~~~~-~~~~v~~a~~~~~~~~~~-------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~   84 (359)
T 1svv_A           14 KPYSFVN-DYSVG-MHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS   84 (359)
T ss_dssp             -CEECSC-SCSSC-CCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred             eeEEecC-CCcCC-CCHHHHHHHHHHHhhccc-------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence            4788887 55665 789999999999987654       2355688999999999999864  35666899999999999


Q ss_pred             hhccCCcEEEEcCCchhHHHhH--hhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          188 CFCKKGDLIVADEGVHWGIQNG--LYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g--~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      ++.++||.|+++.+.|.++..+  +...|.+++.++.+    |+++|++.+++....   ...++++|+++++ +++|.+
T Consensus        85 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~---~~~~~~~v~~~~~-~ptG~~  160 (359)
T 1svv_A           85 LALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSE---HMVIPKLVYISNT-TEVGTQ  160 (359)
T ss_dssp             HHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCST---TSCEEEEEEEESS-CTTSCC
T ss_pred             HHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhc---cCCCceEEEEEcC-CCCcee
Confidence            9999999999999999998874  77788899888875    488898888653100   0113677777777 678999


Q ss_pred             cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHh
Q 011567          262 AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRL  337 (483)
Q Consensus       262 ~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~  337 (483)
                      .|   +++|+++|++||+++|+||+|....+|..+... ..+++. ...|+++.|.+|..++.| |+++.++++++.++.
T Consensus       161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~  238 (359)
T 1svv_A          161 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKAGGMFGEALIILNDALKPNARH  238 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHH-HHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHH
T ss_pred             cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhh-hcCCEEEEecccCCCCCceEEEEEcccHHHHHHH
Confidence            99   999999999999999999999332233322211 111110 124888889999876666 888888887766543


Q ss_pred             c--CCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567          338 S--SSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK  413 (483)
Q Consensus       338 ~--~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~  413 (483)
                      .  ..++.++.+ .+.. ++..+   .+++.  ++..++++++.+++.+.| +.+++++..+..++++++.+.       
T Consensus       239 ~~~~~~~~~~~~-~~~~-~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~-------  305 (359)
T 1svv_A          239 LIKQRGALMAKG-WLLG-IQFEV---LMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE-------  305 (359)
T ss_dssp             HHHHTTCCCTTT-HHHH-HHHHH---HTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-------
T ss_pred             HHhcCCcccccc-hhhH-HHHHH---HHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-------
Confidence            2  123333322 2222 22222   23322  357888899999999999 556888775556777766652       


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                            .++++.++++.||.+.... +.     .+..+|++++..+|++|+++++++|+++++++
T Consensus       306 ------~~~~~~l~~~~gi~v~~~~-~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          306 ------NTMIAELNNDFDMYTVEPL-KD-----GTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             ------HHHHHHHTTTEECEEEEEE-TT-----TEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ------HHHHHHHHHhcCEEEEecc-cC-----CCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence                  1466655443389883211 00     12349999999999999999999999887653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=3.1e-26  Score=231.08  Aligned_cols=316  Identities=17%  Similarity=0.185  Sum_probs=225.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      .+|.+.+++.+++...    .    .....+...++++++++++|.+.  .+ +.++|++|+..+++++.++||.|++..
T Consensus        30 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~  101 (393)
T 2huf_A           30 APQRVLDAMSRPILGH----L----HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGH  101 (393)
T ss_dssp             CCHHHHHHTTSCCCCT----T----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCHHHHHHHHhhhccC----C----CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5688888876655421    0    11123578899999999999753  45 448889999999999999999888888


Q ss_pred             CchhHHH--hHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          201 GVHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       201 ~~h~s~~--~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      +.|.+..  ..++..|.+++.++.     .|+++|++.+++.         ++++|+++++++++|.+.|+++|+++|++
T Consensus       102 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~~~~~  172 (393)
T 2huf_A          102 TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIH---------KPSVLFLTQGDSSTGVLQGLEGVGALCHQ  172 (393)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhcc---------CCcEEEEEccCCCccccCCHHHHHHHHHH
Confidence            8777632  233446788877763     4788888887642         15678888899999999999999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhc---CCcee-----
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLS---SSGYV-----  343 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~---~~~~~-----  343 (483)
                      ||+++|+||++++|...         .++...++|++++|++|+++ +.| |++++++++++.++..   ..++.     
T Consensus       173 ~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (393)
T 2huf_A          173 HNCLLIVDTVASLGGAP---------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSL  243 (393)
T ss_dssp             TTCEEEEECTTTBTTBC---------CCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHH
T ss_pred             cCCEEEEEcccccCCCC---------cchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHH
Confidence            99999999999865321         12222245999999999864 455 8999999998887643   11211     


Q ss_pred             ------------ec-CCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEEEEe
Q 011567          344 ------------FS-ASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVFLIL  405 (483)
Q Consensus       344 ------------fs-~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~-i~~l~l  405 (483)
                                  +. ++.+...++++.++++.+.+  .++..++++++++++.+.|+++ |+.+..+.  .++ ++.+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  322 (393)
T 2huf_A          244 VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKV  322 (393)
T ss_dssp             HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEEC
T ss_pred             HHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEc
Confidence                        11 23466666666678887643  3567888999999999999987 87776432  233 777777


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      +...     +   ..++.+.++++.||.+.+...+.     .+..+|+++ +...+++|+++++++|+++++++-
T Consensus       323 ~~~~-----~---~~~~~~~L~~~~gi~v~~g~~~~-----~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~  384 (393)
T 2huf_A          323 PQGV-----D---WLKAAQYAMKTYLVEISGGLGPT-----AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK  384 (393)
T ss_dssp             CTTC-----C---HHHHHHHHHHHHCEECBCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCC-----C---HHHHHHHHHHhCCEEEecCcccc-----cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence            4211     1   23566665555599998654321     124599999 545689999999999999988753

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.95  E-value=9.2e-26  Score=230.56  Aligned_cols=315  Identities=15%  Similarity=0.166  Sum_probs=220.8

Q ss_pred             cccChHHHHHHHHHHHhhhCCC----------CEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeE
Q 011567          149 FYGTIDVHLDCEARIAKFLGTP----------DSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTV  217 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e----------~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v  217 (483)
                      ..|..++...+++.++++.|.+          +.+++ +++++++..++++++++||.|+++.+.|..+...++..|.++
T Consensus        77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~  156 (425)
T 2r2n_A           77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNI  156 (425)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEE
Confidence            3566677777788777777743          35555 666789999999999999999999999999999999999998


Q ss_pred             EEecCC----CHHHHHHHHHHhhhhhh--hccCccEEEEE-ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccc
Q 011567          218 VYFKHN----DMDSLRNTLERVTADNK--RAKKLRRYIVV-EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       218 ~~~~~~----d~~~Le~~l~~~~~~~~--~~~~~~~~iv~-e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                      +.++.+    |+++|++.+++.....+  ....++++|++ +.+++++|.+.|   +++|+++|++||+++|+||+|+.+
T Consensus       157 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~  236 (425)
T 2r2n_A          157 INVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL  236 (425)
T ss_dssp             EEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             EEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            888753    78888888863210000  00012456655 567888999998   559999999999999999999976


Q ss_pred             cccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh
Q 011567          288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE  364 (483)
Q Consensus       288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~  364 (483)
                      .++  |........++..+.+++++|+||+++ .|   ||+++++++++.++.......+  +.+++..+++.++++.+.
T Consensus       237 ~~~--g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~  311 (425)
T 2r2n_A          237 QFN--KFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTL--HPSTFNQLMISQLLHEWG  311 (425)
T ss_dssp             BSS--SSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTC--SSCHHHHHHHHHHHHHHH
T ss_pred             cCC--CCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcc
Confidence            553  222222223333455788999999998 66   9999999998877654322223  346777777777777531


Q ss_pred             ------cCcHHHHHHHHHHHHHHHhhcc-CCCc-eeecCCCCCEEEEEecCCCCCchhhHHHHHH-HHHHHHHhCCEEEE
Q 011567          365 ------ENPDLITKLKKNTAILRTGLSD-IHGL-SIASNPESPIVFLILEKSTGSMKNDLQLLED-IADWALKEDGVFVV  435 (483)
Q Consensus       365 ------~~~~~~~~l~~~~~~l~~~L~~-~~~~-~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~-i~~~~l~~~Gv~v~  435 (483)
                            ...++++.++++.+++.+.|++ ++++ .+..+..+.++++.++....    .    .+ +.+. +.++||.+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~----~----~~~~~~~-l~~~gv~v~  382 (425)
T 2r2n_A          312 EEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND----V----KELIEEK-AVKMGVLML  382 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC----C----HHHHHTH-HHHTTEECE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC----H----HHHHHHH-HHHCCcEEe
Confidence                  1234667788888888888876 5676 34445567788888854211    1    12 3443 456799999


Q ss_pred             eecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       436 ~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++..+..........+||+++. .|++++++++++|++++++.
T Consensus       383 pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          383 PGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence            8765432111112459999874 69999999999999998764

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.95  E-value=1.5e-26  Score=235.75  Aligned_cols=337  Identities=12%  Similarity=0.125  Sum_probs=226.9

Q ss_pred             CeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHH
Q 011567          108 GKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLS  180 (483)
Q Consensus       108 G~~~id~~s~~~lG~~----~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~  180 (483)
                      |+++|||+.++|++..    ..+.+.+++.+.......+.+   ...|..++...+++.+....+.+   +.+++++|++
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~  113 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYA---PIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTG  113 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCC---CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred             CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCC---CCCChHHHHHHHHHHHhcccCccccccEEECCchHH
Confidence            5679999999774432    345566655443221001111   12344444455555554444655   6777788899


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      |+..++++++++||.|+++.++|..+...+...|.+++.++.      .|+++|++.+++....     +++++++++++
T Consensus       114 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~-----~~~~~vi~~~p  188 (418)
T 3rq1_A          114 GIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK-----QTNVVVIFNTP  188 (418)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH-----CSEEEEEEECS
T ss_pred             HHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc-----CCCEEEEEeCC
Confidence            999999999999999999999999999999999999988874      2788898888753211     13457777766


Q ss_pred             -cCCCCCccC---hHHHHHHHH------HcCcEEEEeCccccccccCCCC---ccc-cccCCCCCceeEEEccccccccC
Q 011567          255 -YQNSGQIAP---LDELIRLKE------KYRFRVFLDESNSFGVLGRSGR---GLT-EHCGVPVDKIDIVTAAMGHALAT  320 (483)
Q Consensus       255 -~~~~G~i~~---L~~l~~l~~------k~~~~li~DEa~s~g~lg~~G~---g~~-~~~~v~~~~~Di~~~s~~K~lg~  320 (483)
                       ++++|.+.|   +++|+++|+      +||+++|+||+|+...  .+|.   .+. ...++.++-+.++++|+||++|.
T Consensus       189 ~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~  266 (418)
T 3rq1_A          189 GNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS--GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM  266 (418)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS--SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc--CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC
Confidence             899999999   555666666      8999999999997543  2222   222 22334332223788999999986


Q ss_pred             CC---ceeec---cHHHHHHHHhcCCceee-c-CCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhc
Q 011567          321 EG---GFCTG---SARVVDHQRLSSSGYVF-S-ASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       321 ~G---G~i~~---~~~~~~~~~~~~~~~~f-s-~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      .|   ||+++   ++++++.++........ . .+.++..++++.++++..       ++..+++++++++.+++.+.|+
T Consensus       267 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  346 (418)
T 3rq1_A          267 YGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA  346 (418)
T ss_dssp             CSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66   99988   88888877543211111 1 134666666666665322       1112456788888899999998


Q ss_pred             cCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH
Q 011567          386 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       386 ~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      ++ |+++..+..+.++++.+.        +   ..++++. |.++||.+.+..          ..+||++. .+|+++++
T Consensus       347 ~~-g~~~~~~~~~~~~~~~~~--------~---~~~~~~~-l~~~gi~v~~g~----------~~iRis~~-~~~~~~i~  402 (418)
T 3rq1_A          347 QV-GLPMLPYRGGFFITIPTD--------S---ANAICEE-LKKEHIYVIALA----------NGIRIAAC-GIPKCQMT  402 (418)
T ss_dssp             HH-TCCCCCCCSSSEEEEECT--------T---HHHHHHH-HHHTTEECEECS----------SEEEEEGG-GSCHHHHT
T ss_pred             hc-CCCCCCCCceEEEEcCCC--------C---HHHHHHH-HHhCCEEEecCC----------CCeEEEEe-cCCHHHHH
Confidence            87 887765545555655542        1   2345654 556799998752          34999976 57999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          466 KACESLKRISAVV  478 (483)
Q Consensus       466 ~~~~~l~~~~~~~  478 (483)
                      +++++|+++++++
T Consensus       403 ~~~~~l~~~l~~~  415 (418)
T 3rq1_A          403 GLAEKIYNAMKSL  415 (418)
T ss_dssp             THHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.95  E-value=6e-27  Score=238.34  Aligned_cols=328  Identities=16%  Similarity=0.178  Sum_probs=206.8

Q ss_pred             CChHHHHHHHHHH-HhcCCCCCCCCCcccCh--H-HHHHHHHHHHhhhCCCCE-EEecccHHHHHhhhhhhccCCcEEEE
Q 011567          124 GHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--D-VHLDCEARIAKFLGTPDS-ILYSYGLSTMFSAIPCFCKKGDLIVA  198 (483)
Q Consensus       124 ~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~-~~~~l~~~La~~~g~e~~-i~~~sG~~a~~~ai~~~~~~gdiI~~  198 (483)
                      .+|.+.+++.+++ +.++.+.++++.+.+..  + .....++++++++|.+.. +++++|++|+..+++++.++||.|++
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~  121 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLG  121 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEe
Confidence            4799999999998 45655555554333322  2 333455889999998766 44799999999999999999999999


Q ss_pred             cCCchhHHH-hHh--hhcCC--eEEEec-----CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567          199 DEGVHWGIQ-NGL--YLSRS--TVVYFK-----HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI  268 (483)
Q Consensus       199 ~~~~h~s~~-~g~--~~s~~--~v~~~~-----~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~  268 (483)
                      +.++|.+.. .+.  ...+.  ..+.++     ..|+++|++.+++..         +++|++++..  .|...|+++|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~v~~~~~~--~~~~~~l~~l~  190 (420)
T 3gbx_A          122 MNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK---------PKMIIGGFSA--YSGVVDWAKMR  190 (420)
T ss_dssp             EEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC---------CSEEEECCTT--CCSCCCHHHHH
T ss_pred             cchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC---------CeEEEEecCc--cCCccCHHHHH
Confidence            999987733 222  22222  333332     258999999886531         4566664322  25688999999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccH---HHHHHHHhcCCceee
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA---RVVDHQRLSSSGYVF  344 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~---~~~~~~~~~~~~~~f  344 (483)
                      ++|++||+++|+||+|+.|..+. |.    +.... ..+|++++|++|++ |+.|||+++++   ++.+.++....+..+
T Consensus       191 ~l~~~~~~~li~De~~~~~~~~~-~~----~~~~~-~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~  264 (420)
T 3gbx_A          191 EIADSIGAYLFVDMAHVAGLIAA-GV----YPNPV-PHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQ  264 (420)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHHT-TS----SCCST-TTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----
T ss_pred             HHHHHcCCEEEEECCcchhceec-cc----CCccc-ccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCC
Confidence            99999999999999998765432 21    11111 23689999999999 56789999987   777776554333333


Q ss_pred             cCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDI  422 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i  422 (483)
                      +...++..++++.+....+++ .+++.++++++.+++.+.|.+. |+++... ..++++++.+.....    +   ...+
T Consensus       265 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~  336 (420)
T 3gbx_A          265 GGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNL----T---GKEA  336 (420)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----C---HHHH
T ss_pred             CCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCC----C---HHHH
Confidence            333333333333332232222 2467888999999999999884 8887643 467788887743211    1   1234


Q ss_pred             HHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccCC----CCHHHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSAA----HSEADLVKACESLKRISAV  477 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~~----~t~edi~~~~~~l~~~~~~  477 (483)
                      .+ .|+++||.+.+...+.. .....+.++||+++..    ++++|+++++++|++++++
T Consensus       337 ~~-~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          337 DA-ALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             HH-HHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HH-HHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence            44 45667999988433221 1111234599998654    5699999999999988754

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.95  E-value=2.4e-27  Score=242.56  Aligned_cols=335  Identities=12%  Similarity=0.044  Sum_probs=235.8

Q ss_pred             eeEEEeecCCC--CCCCCChHH--HHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-----CC--CC---EEE
Q 011567          109 KEVVNFASANY--LGLIGHEKL--LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-----GT--PD---SIL  174 (483)
Q Consensus       109 ~~~id~~s~~~--lG~~~~p~i--~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-----g~--e~---~i~  174 (483)
                      ++++||+++.+  +|.  +|.+  .+++.+++.+.+.      ..|+......++++.+++++     +.  ++   .++
T Consensus        47 ~~~i~l~~g~~~~~~~--~~~~~~~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~  118 (430)
T 2x5f_A           47 STTYNATIGMATNKDG--KMFASSLDAMFNDLTPDEI------FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV  118 (430)
T ss_dssp             TCSEECCCSSCEETTE--ECCCHHHHTTBSSCCGGGT------SSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred             CCcEEeeeeeccCCCC--chhhHHHHHHHHhcCcccc------cccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence            45899999855  564  4556  6666665543111      12222223567888888888     64  35   566


Q ss_pred             ecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhh-cCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccE
Q 011567          175 YSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL-SRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       175 ~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~-s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      +++|++|+..++++++++||.|+++.+.|.++...+.. .|.+++.++.      .|+++|++.+++...       +++
T Consensus       119 t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~  191 (430)
T 2x5f_A          119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNK-------DKV  191 (430)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCS-------SEE
T ss_pred             cCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCC-------CCE
Confidence            67888999999999999999999999999998888888 8988888764      267888888865321       256


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHH-----cCcEEEEeCccccccccCCC-Cccc-cccCCCCCce-eEEEccccc
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEK-----YRFRVFLDESNSFGVLGRSG-RGLT-EHCGVPVDKI-DIVTAAMGH  316 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k-----~~~~li~DEa~s~g~lg~~G-~g~~-~~~~v~~~~~-Di~~~s~~K  316 (483)
                      +|++..+++++|.+.|   +++|+++|++     ||+++|+||+|+.+.++..+ ..+. ...+..++.+ +++++|++|
T Consensus       192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  271 (430)
T 2x5f_A          192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATK  271 (430)
T ss_dssp             EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred             EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEeccc
Confidence            6666666888999999   8999999999     99999999999876554211 1111 2212222112 677899999


Q ss_pred             cccCCC---ceeec---cHHHHHHHHhcCCce--eecCCCcHHHHHHHHHHHH----HHhcCcHHHHHHHHHHHHHHHhh
Q 011567          317 ALATEG---GFCTG---SARVVDHQRLSSSGY--VFSASLPPYLASAAITAID----VLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       317 ~lg~~G---G~i~~---~~~~~~~~~~~~~~~--~fs~~~~p~~~aaa~~al~----~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++|..|   ||+++   ++++++.++......  ....+.|++.++++.++++    +.++..+..++++++.+++.+.|
T Consensus       272 ~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  351 (430)
T 2x5f_A          272 EFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVV  351 (430)
T ss_dssp             HTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998666   99998   999888775432220  0122457888888888887    33333347888889999999999


Q ss_pred             c----cCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          385 S----DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       385 ~----~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      +    +. ++.+..+..+.++++.++ ..     +   ..++++.+++++||.+.++.         +..+||+++. .+
T Consensus       352 ~~~~~~~-g~~~~~~~~g~~~~~~~~-~~-----~---~~~~~~~l~~~~gi~v~~g~---------~~~iRis~~~-~~  411 (430)
T 2x5f_A          352 YADQYHS-HWQAYDFNSGYFMAIKVH-DV-----D---PEALRKHLIDKYSIGVIALN---------ATDIRIAFSC-VE  411 (430)
T ss_dssp             TCGGGTT-TEEECCCCBSSEEEEEES-SS-----C---HHHHHHHHHHHHCEECEECS---------SSEEEEEGGG-SC
T ss_pred             HhhCCCC-CceeeCCCceEEEEeCCC-CC-----C---HHHHHHHHHHhCCEEEecCC---------CCeEEEEEec-CC
Confidence            8    44 777765444556888875 11     1   23567766663599998751         2449999986 59


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAVV  478 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~~  478 (483)
                      ++++++++++|+++++++
T Consensus       412 ~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          412 KDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.95  E-value=1.2e-25  Score=222.03  Aligned_cols=311  Identities=16%  Similarity=0.137  Sum_probs=227.9

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHH
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~  183 (483)
                      +.+++|||.++ |++|.  +|.+.+++.+.++.+.        .|. .+...++++++++++|.+ +.+++ +++++++.
T Consensus        14 ~~~~~i~l~~n~~~~~~--~~~v~~a~~~~~~~~~--------~y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~   82 (337)
T 3p1t_A           14 AAAQAVCLAFNENPEAV--EPRVQAAIAAAAARIN--------RYP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD   82 (337)
T ss_dssp             CCCCCEECSSCCCCSCC--CHHHHHHHHHHGGGTT--------SCC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             CCCCceEeeCCCCCCCC--CHHHHHHHHHhhhhhc--------cCC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence            45679999999 88775  5899999998877532        222 246789999999999975 34555 55667888


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      .++.++  +||.|+++.+.|.++...++..|.+++.++.+     |+++|++.     .       ++++|+++.+++++
T Consensus        83 ~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-----~-------~~~~v~i~~p~npt  148 (337)
T 3p1t_A           83 RISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV-----S-------RDDCVVLANPSNPT  148 (337)
T ss_dssp             HHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC-----C-------TTEEEEEESSCTTT
T ss_pred             HHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh-----c-------CCCEEEEeCCCCCC
Confidence            888888  89999999999999999999999999888754     56665543     1       25788888889999


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.|++++.++|+++++ +|+||+|+..  +..+...     ....+.+++++|+||++|..|   ||+++++++++.+
T Consensus       149 G~~~~~~~l~~l~~~~~~-~ivDea~~~~--~~~~~~~-----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l  220 (337)
T 3p1t_A          149 GQALSAGELDQLRQRAGK-LLIDETYVDY--SSFRARG-----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAM  220 (337)
T ss_dssp             CCCCCHHHHHHHHHHCSE-EEEECTTGGG--SSCSSSC-----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCc-EEEECCChhh--ccccccc-----cccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHH
Confidence            999999999999999997 5669999752  2212111     111345789999999998556   9999999999888


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....    .+.++...+++.++++......+.++++.++.+++.+.|+++ |+.+.. +.+.++++...+       .
T Consensus       221 ~~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~-------~  287 (337)
T 3p1t_A          221 KRKQWF----CNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVAS-SEANFVLVENAA-------G  287 (337)
T ss_dssp             HTTSCT----TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCC-CSSSEEEEECTT-------T
T ss_pred             HhhcCC----CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEECC-CCCeEEEEEcCC-------H
Confidence            654322    234666666666666543222346677788888999999887 777653 467777776532       1


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                          .++.+ .|+++||.+.++..+..     +..+|++++   +++|+++++++|+++.+
T Consensus       288 ----~~~~~-~l~~~gi~v~~g~~~~~-----~~~iRis~~---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          288 ----ERTLR-FLRERGIQVKDAGQFGL-----HHHIRISIG---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             ----HHHHH-HHHHTTEECEEGGGGTC-----CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHH-HHHHCCeEEEECccCCC-----CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence                13444 45567999998765432     345999985   79999999999987653

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.95  E-value=7.7e-26  Score=235.84  Aligned_cols=346  Identities=12%  Similarity=0.066  Sum_probs=234.7

Q ss_pred             ChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhhC----CCCEEEecccHHHHHhhhhhhc-cCCcEEEE
Q 011567          125 HEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLSTMFSAIPCFC-KKGDLIVA  198 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~g----~e~~i~~~sG~~a~~~ai~~~~-~~gdiI~~  198 (483)
                      ++.+.+++.+.+.+++ .+..+.....|..++...+++.+.+..|    .++.+++++|++++..++.++. ++||.|++
T Consensus       108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  187 (500)
T 3tcm_A          108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV  187 (500)
T ss_dssp             CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred             CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence            4567788888888752 1333333344555555666666655544    3467777888999999999998 89999999


Q ss_pred             cCCchhHHHhHhhhcCCeEEEec-------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHH
Q 011567          199 DEGVHWGIQNGLYLSRSTVVYFK-------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELI  268 (483)
Q Consensus       199 ~~~~h~s~~~g~~~s~~~v~~~~-------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~  268 (483)
                      +.+.|.++..++...|.+++.++       +.|+++|++.+++....    ..++++|++..++|++|.+.+   +++|+
T Consensus       188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~k~ivl~~p~NPtG~~~s~~~l~~i~  263 (500)
T 3tcm_A          188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSR----GINVRALVVINPGNPTGQVLAEENQYDIV  263 (500)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHT----TCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhc----CCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence            99999999999999999988876       45899999998764321    112566666677889999988   67788


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccc-----cccCCCCCc-eeEEEccccccc-c---CCCceeec---cHHHHHHH
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLT-----EHCGVPVDK-IDIVTAAMGHAL-A---TEGGFCTG---SARVVDHQ  335 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~-----~~~~v~~~~-~Di~~~s~~K~l-g---~~GG~i~~---~~~~~~~~  335 (483)
                      ++|++||+++|+||+|+.++++.......     ..++...++ ..++++|+||++ |   ..+||+++   ++++++.+
T Consensus       264 ~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l  343 (500)
T 3tcm_A          264 KFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQI  343 (500)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHH
T ss_pred             HHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHH
Confidence            88999999999999999877753222111     123221122 247788999999 4   44599877   88888876


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHH-----------HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      +.....   ....++...+++..+++           +.++.++++++++++++++.+.|++++|+.+..+..+.+.++.
T Consensus       344 ~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~  420 (500)
T 3tcm_A          344 YKIASV---NLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQ  420 (500)
T ss_dssp             HHHHHT---TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCE
T ss_pred             HHHHhc---ccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeee
Confidence            543211   12234555555555553           3333356788899999999999999889888765555566655


Q ss_pred             ecCCCCCchh----hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          405 LEKSTGSMKN----DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       405 l~~~~~~~~~----~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      +..+....+.    .......++.++|++.||++.++..+.....  ...+|+++.  ++++++++++++|+++++++.+
T Consensus       421 ~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g--~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          421 ICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG--TWHFRCTIL--PQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             ECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT--CCBEEEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC--CCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            5322100000    0000122344567777999998765442111  234999998  8999999999999999988876


Q ss_pred             c
Q 011567          481 D  481 (483)
Q Consensus       481 ~  481 (483)
                      +
T Consensus       497 ~  497 (500)
T 3tcm_A          497 E  497 (500)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.95  E-value=2.6e-26  Score=227.92  Aligned_cols=311  Identities=14%  Similarity=0.089  Sum_probs=224.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhccCCcEEEEcCC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKGDLIVADEG  201 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~  201 (483)
                      .+|.+.+++.+++...        ..+...+...++++++++++|.+  +.++.++|++|+..+++++.++||.|++..+
T Consensus        12 ~~~~v~~a~~~~~~~~--------~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   83 (352)
T 1iug_A           12 LHPKALEALARPQLHH--------RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY   83 (352)
T ss_dssp             CCHHHHHHHHSCCCCT--------TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCHHHHHHhccCCCCc--------cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeC
Confidence            4688888877665421        11223456789999999999976  4555678899999999999999999999988


Q ss_pred             chhHHH--hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567          202 VHWGIQ--NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY  274 (483)
Q Consensus       202 ~h~s~~--~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~  274 (483)
                      .|.+..  ..+...|.+++.++.+     |+++|++      .       ++++|+++++++++|.+.|+++|.++|++|
T Consensus        84 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~------~-------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~  150 (352)
T 1iug_A           84 GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK------E-------GYAGLLLVHSETSTGALADLPALARAFKEK  150 (352)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC------S-------SCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc------c-------CCcEEEEEEecCCcceecCHHHHHHHHHhh
Confidence            888864  2334468888777653     4555543      1       256888899999999999999999999999


Q ss_pred             --CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHH---------HH----h
Q 011567          275 --RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDH---------QR----L  337 (483)
Q Consensus       275 --~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~---------~~----~  337 (483)
                        |+++|+||+|++|...         +++...++|++++|++|+++ +.| |+++.++++++.         ++    .
T Consensus       151 ~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (352)
T 1iug_A          151 NPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA  221 (352)
T ss_dssp             CTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH
T ss_pred             CCCCEEEEECCccccCcc---------eeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh
Confidence              9999999999865432         11111135899999999664 445 888888887654         11    1


Q ss_pred             cCCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCchhh
Q 011567          338 SSSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       338 ~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~  415 (483)
                      .... .+..+.++..++++.++++.+++. ++.+++++++.+++.+.|+++ |+++..+. .+.++++.++...     +
T Consensus       222 ~~~~-~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~  294 (352)
T 1iug_A          222 QKEG-ESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----P  294 (352)
T ss_dssp             HTTT-CCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC-----C
T ss_pred             cccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC-----C
Confidence            1111 233456777777777888876543 467888999999999999987 88876543 5678888874211     1


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                         ..++.+.+. ++||.+.+...+.     .+..+|++++..+|++|+++++++|++++++++.
T Consensus       295 ---~~~~~~~l~-~~gi~v~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  350 (352)
T 1iug_A          295 ---YARVKEAFA-QRGAVIAGGQGPL-----KGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP  350 (352)
T ss_dssp             ---HHHHHHHHH-TTTEECEECCGGG-----TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             ---HHHHHHHHH-HCCEEEEeCCCcc-----CCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence               235666655 4599998765321     1245999999989999999999999999987753

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.95  E-value=1.4e-26  Score=234.71  Aligned_cols=336  Identities=15%  Similarity=0.170  Sum_probs=234.2

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCCE-EEecccHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPDS-ILYSYGLST  181 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~~-i~~~sG~~a  181 (483)
                      ++++|+.++ +++    +|.+.+++.+++.+ +..+.+.++...|.. .+..++    +++++++|.+.. +++++|++|
T Consensus        23 ~~~i~~~~~~~~~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a   97 (407)
T 2dkj_A           23 REGLELIASENFV----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQA   97 (407)
T ss_dssp             HTSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred             hcceeeccCCCCC----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence            367898887 555    79999999999875 444444443333443 223333    599999998766 556899999


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHH---hHhhhcCC--eEEEec------CCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQ---NGLYLSRS--TVVYFK------HNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~---~g~~~s~~--~v~~~~------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      +..+++++.++||.|++..+.|.++.   ..+...|.  ..+.++      ..|+++|++.+++.         ++++|+
T Consensus        98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---------~~~~v~  168 (407)
T 2dkj_A           98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH---------RPKVIV  168 (407)
T ss_dssp             HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH---------CCSEEE
T ss_pred             HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc---------CCeEEE
Confidence            99999999999999999999987763   34444444  344442      24788898888642         145555


Q ss_pred             E-ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc
Q 011567          251 V-EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS  328 (483)
Q Consensus       251 ~-e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~  328 (483)
                      + +|.+   |.+.|+++|+++|++||+++|+||+|+.|..+. |... ..  .  ..+|++++|++|+++ +.|||++++
T Consensus       169 ~~~p~~---~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~-~~--~--~~~di~~~s~sK~l~g~~~G~~~~~  239 (407)
T 2dkj_A          169 AGASAY---PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA-GLHP-NP--L--PYAHVVTSTTHKTLRGPRGGLILSN  239 (407)
T ss_dssp             ECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TCSC-CC--T--TTCSEEEEESSGGGCCCSCEEEEES
T ss_pred             Eecccc---CCCCCHHHHHHHHHHcCCEEEEEcccccccccc-CccC-Cc--c--ccccEEEEeccccCCCCCceEEEEC
Confidence            5 4544   577889999999999999999999999865432 2111 11  1  125999999999995 678999998


Q ss_pred             -HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEE
Q 011567          329 -ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLI  404 (483)
Q Consensus       329 -~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~  404 (483)
                       +++++.++.....+..+ +.++..++++.++++.+..  .+++.++++++.+++.+.|+++ |+++.. +..++++++.
T Consensus       240 ~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  317 (407)
T 2dkj_A          240 DPELGKRIDKLIFPGIQG-GPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVD  317 (407)
T ss_dssp             CHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEE
T ss_pred             CHHHHHHHHhhhcccccC-CCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEE
Confidence             78888776543333222 3466666677778877532  2568889999999999999987 888764 3468888888


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-cCCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-KCRLPVGIRLFVSA----AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++....    +   ..++.+. |.++||.+.+...+... ....+..+|++++.    .+|++|+++++++|++++++
T Consensus       318 ~~~~~~----~---~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          318 LRPKGL----T---GKEAEER-LDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             CGGGTC----C---HHHHHHH-HHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             CcccCC----C---HHHHHHH-HHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            753110    1   2345665 45679999876532100 00113459999875    38999999999999999877

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.95  E-value=1.4e-26  Score=234.68  Aligned_cols=290  Identities=12%  Similarity=0.124  Sum_probs=211.4

Q ss_pred             ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHH
Q 011567          152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS  227 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~  227 (483)
                      ..+...++++++++++|.++.+++++|++|+..+++++.++||.|+++.+.|.++...+    ...|.+++.++.+|+++
T Consensus        62 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~  141 (398)
T 2rfv_A           62 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEE  141 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence            45788999999999999999999999999999999999999999999999999887776    67789999999889888


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      |++.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+.++.   ..  .+     ++
T Consensus       142 l~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~~--~~-----~~  201 (398)
T 2rfv_A          142 IRAAMRP----------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ---PL--QL-----GA  201 (398)
T ss_dssp             HHHHCCT----------TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---GG--GG-----TC
T ss_pred             HHHhcCC----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---ch--hh-----CC
Confidence            8877643          26889999999999999999999999999999999999999776532   11  12     24


Q ss_pred             eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceee-cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~f-s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                      |+++.|++|+++..    ||++++++++++ .++...  ..+ +.+.+|..++++.++++.+.   ...+++.++.+.+.
T Consensus       202 di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~  276 (398)
T 2rfv_A          202 DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL--KDITGGCMSPFNAWLTLRGVKTLG---IRMERHCENALKIA  276 (398)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH--HHTTCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHH
T ss_pred             cEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH--HhCCCCCCCHHHHHHHHhhhhhHH---HHHHHHHHHHHHHH
Confidence            89999999999643    589999988876 444321  122 34568888888888876542   34556666777777


Q ss_pred             HhhccC--------------CCceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---
Q 011567          382 TGLSDI--------------HGLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---  441 (483)
Q Consensus       382 ~~L~~~--------------~~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---  441 (483)
                      +.|.+.              +++.+..   ...++++.+.++.       ......++.+. +...|+.+..+...+   
T Consensus       277 ~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~~-~~~~~i~~~~G~~~~li~  348 (398)
T 2rfv_A          277 RFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-------GLEAGRRMINS-VELCLLAVSLGDTETLIQ  348 (398)
T ss_dssp             HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------HHHHHHHHHTT-CSSSEECSCCSSSSCEEE
T ss_pred             HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-------CHHHHHHHHHh-CCcceeccCCCCcceeee
Confidence            776653              2233222   1357888888742       11223333333 222366655442210   


Q ss_pred             ---c------c-----c-CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          442 ---L------D-----K-CRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       442 ---~------~-----~-~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         .      +     . ...++.||++++..+++++++++.++|+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          349 HPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             CHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence               0      0     0 011345999999999999999999988764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.95  E-value=5.6e-26  Score=231.56  Aligned_cols=339  Identities=16%  Similarity=0.210  Sum_probs=213.4

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccCh--HHHHHHH-HHHHhhhCCCCEEE-ecccHHHHH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--DVHLDCE-ARIAKFLGTPDSIL-YSYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~~~~~l~-~~La~~~g~e~~i~-~~sG~~a~~  183 (483)
                      +.+++.++ |++    +|++.+++.+++ +.|+.+.++++.+.+..  +...+++ +.+++++|.+...+ +++|++|+.
T Consensus        33 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~  108 (425)
T 3ecd_A           33 SQVELIASENIV----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG  108 (425)
T ss_dssp             HSEECCTTCCCC----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred             cceeeecccCCC----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence            35677665 553    799999999998 45665555554333332  2445554 78999999988754 799999999


Q ss_pred             hhhhhhccCCcEEEEcCCchhH-HHhHhh--hcCC--eEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          184 SAIPCFCKKGDLIVADEGVHWG-IQNGLY--LSRS--TVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s-~~~g~~--~s~~--~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      .+++++.++||.|++..+.|.+ ...+..  ..+.  ..+.++.+      |+++|++.+++.         ++++|+++
T Consensus       109 ~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~  179 (425)
T 3ecd_A          109 AVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH---------KPSLIIAG  179 (425)
T ss_dssp             HHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH---------CCSEEEEE
T ss_pred             HHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc---------CCcEEEEc
Confidence            9999999999999999998877 323332  3343  44455543      888999888642         14566666


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-AR  330 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~  330 (483)
                      +..+  |...++++|+++|++||+++|+||+|+.|.... |..    ++.. ..+|++++|++|+++ +.|||++++ ++
T Consensus       180 ~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~~----~~~~-~~~di~~~s~sK~l~g~~~g~~~~~~~~  251 (425)
T 3ecd_A          180 FSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-GRH----ANPV-EHAHVVTSTTHKTLRGPRGGFVLTNDEE  251 (425)
T ss_dssp             CSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-TSS----CCGG-GTCSEEEEESSGGGCCCSCEEEEESCHH
T ss_pred             cccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-ccc----cCch-hcCcEEEecCCcccCCCCcEEEEeCCHH
Confidence            4332  778889999999999999999999987765432 221    1111 125899999999994 568999887 56


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKS  408 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~  408 (483)
                      +.+.++........+...++..++++.+..+..++ .+++.++++++.+++++.|.+. |+++..+ ..++++++.+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  330 (425)
T 3ecd_A          252 IAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPK  330 (425)
T ss_dssp             HHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred             HHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCC
Confidence            76666543222222233334444433333333322 2467888999999999999884 8877643 4677888877432


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-cCCCCCceEEE----ccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-KCRLPVGIRLF----VSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lRi~----~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..    +   ...+.+ .|+++||.+.+...+... ....+.++|++    .+..++++++++++++|++++++.
T Consensus       331 ~~----~---~~~~~~-~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          331 GL----K---GAQVEQ-ALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             TC----C---HHHHHH-HHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CC----C---HHHHHH-HHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence            10    1   123444 456679999865433211 01113469999    455567999999999999998775

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.95  E-value=4.9e-26  Score=238.34  Aligned_cols=340  Identities=15%  Similarity=0.132  Sum_probs=237.6

Q ss_pred             EEEeecCCCCCCC--CChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhCCC----CE--EEecccHHH
Q 011567          111 VVNFASANYLGLI--GHEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLGTP----DS--ILYSYGLST  181 (483)
Q Consensus       111 ~id~~s~~~lG~~--~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~--i~~~sG~~a  181 (483)
                      .+++.+++++|+.  .++.+.+++.+++..+.. +...+..+.+......++++++++++|.+    ..  +++++|++|
T Consensus        93 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a  172 (514)
T 3mad_A           93 SPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTES  172 (514)
T ss_dssp             HHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHH
T ss_pred             CCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHH
Confidence            3556667778843  568888888888775432 12222223334456677888889999976    44  777999999


Q ss_pred             HHhhhhhhccCC--------cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          182 MFSAIPCFCKKG--------DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       182 ~~~ai~~~~~~g--------diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      +..+++++.+++        |.|+++.+.|.++.++++..|.+++.++.+     |+++|++.+++          ++++
T Consensus       173 ~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~----------~~~~  242 (514)
T 3mad_A          173 LLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP----------NTVV  242 (514)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEE
T ss_pred             HHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc----------CCEE
Confidence            999999987665        899999999999999999999999998876     78888887743          2688


Q ss_pred             EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEcccccccc-CC-Cc
Q 011567          249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TE-GG  323 (483)
Q Consensus       249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~-GG  323 (483)
                      |+++++++++|.+.|+++|+++|++||+++|+||+|+.+++   +..|.... .+.....++|++++|++|+++ +. .|
T Consensus       243 v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~-~~~~~~~g~d~~~~s~~K~l~~~~~~g  321 (514)
T 3mad_A          243 VAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVP-PFDFRLEGVTSVSADTHKYGYGAKGTS  321 (514)
T ss_dssp             EEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCC-CCSTTSTTCCEEEECTTTTTCCCSSCE
T ss_pred             EEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCC-cccccCCCCcEEEECchhccCCCCCeE
Confidence            89999999999999999999999999999999999987764   33333111 122223456999999999964 33 36


Q ss_pred             eeeccHHHHHHHHh-cCC--------ceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCcee
Q 011567          324 FCTGSARVVDHQRL-SSS--------GYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSI  392 (483)
Q Consensus       324 ~i~~~~~~~~~~~~-~~~--------~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i  392 (483)
                      +++.+++....... ...        .+.+.++.+....+++.++++.+..  .+++.+++.++++++.+.|++++++++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  401 (514)
T 3mad_A          322 VILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKI  401 (514)
T ss_dssp             EEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred             EEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            66555554433211 000        0112223344444445555655533  246888999999999999999888888


Q ss_pred             ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHH
Q 011567          393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESL  471 (483)
Q Consensus       393 ~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l  471 (483)
                      ..++ ..++.+.....      +   ..++.+.++ ++||.+....+        ++.+|++++. ..+++++++++++|
T Consensus       402 ~~~~-~~~~~~~~~~~------~---~~~l~~~L~-~~Gi~v~g~~~--------~~~~Ri~~~~~~~~~e~i~~~l~~L  462 (514)
T 3mad_A          402 LGDP-LWVIAVASDEL------N---IYQVMEEMA-GRGWRLNGLHR--------PPAFHVALTLRHTEPGVVDRFLADL  462 (514)
T ss_dssp             SSCC-SSEEEEECSSS------C---HHHHHHHHH-TTTCBCEEETT--------TTEEEEECCGGGGSTTHHHHHHHHH
T ss_pred             eCCC-eEEEEEeCCCC------C---HHHHHHHHH-hcCCEeccCCC--------CCeEEEEEecCCCCHHHHHHHHHHH
Confidence            7553 45666654211      1   235677655 45998843322        3559999874 45679999999999


Q ss_pred             HHHHHHHHh
Q 011567          472 KRISAVVLR  480 (483)
Q Consensus       472 ~~~~~~~~~  480 (483)
                      +++++++..
T Consensus       463 ~~~l~~~~~  471 (514)
T 3mad_A          463 QDAVAQVRA  471 (514)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988754

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.95  E-value=2.5e-26  Score=232.75  Aligned_cols=341  Identities=12%  Similarity=0.128  Sum_probs=226.7

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh--hC-C-C-CEEEecccHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF--LG-T-P-DSILYSYGLSTM  182 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~--~g-~-e-~~i~~~sG~~a~  182 (483)
                      |+++|||.++.+ ++..+|.+.+++.+++++.+...  ....|+......++++.++++  .| . + +.++.+++++++
T Consensus        32 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPT--TCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSS--CCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCC-CCCCCHHHHHHHHHHHhcccccc--cccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            567899988854 34467999999999998753211  011233333457899999999  46 2 3 444556667787


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCe-EEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST-VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI  261 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i  261 (483)
                      ..++.. .++||.|+++.+.|.++...+...|.+ ++.++.++-..+...+++.        .++++|+++++++++|.+
T Consensus       109 ~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l~~p~nptG~~  179 (400)
T 3asa_A          109 FRLLSF-FGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCLCSPNNPTGTV  179 (400)
T ss_dssp             HHHHHH-HCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEEESSCTTTCCC
T ss_pred             HHHHHH-cCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEEeCCCCCCCCc
Confidence            776544 478899999989888888888888888 8887764211111001110        125666666788999999


Q ss_pred             cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ceeeccHHH---
Q 011567          262 AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTGSARV---  331 (483)
Q Consensus       262 ~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i~~~~~~---  331 (483)
                      .|   +++|+++|++||+++|+||+|+.+..+  |........++. .+.+++++|+||++|..|   ||+++++++   
T Consensus       180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~  257 (400)
T 3asa_A          180 LNKDQLRAIVHYAIEHEILILFDAAYSTFISD--PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYA  257 (400)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC--TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCT
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC--CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccc
Confidence            88   678999999999999999999854332  221112222221 234688899999998666   999888887   


Q ss_pred             ----HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE-ec
Q 011567          332 ----VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI-LE  406 (483)
Q Consensus       332 ----~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~-l~  406 (483)
                          ++.+........|+ +.++...+++.++++.. ..++++++++++.+++.+.|++. |+++..+..++++++. ++
T Consensus       258 ~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~  334 (400)
T 3asa_A          258 DGHFVIQDWERFLSTTFN-GASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQ  334 (400)
T ss_dssp             TSCBHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCC
T ss_pred             hhhhHHHHHHHHhccCcc-CCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccC
Confidence                55443221122232 34677777777777754 34578899999999999999887 8887755567888888 64


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ....        ..+++..+++++||.+.++..+...   .+..+||++  ..|++++++++++|++++++.
T Consensus       335 ~~~~--------~~~~~~~l~~~~gv~v~~g~~f~~~---~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          335 ANIS--------DRDLFDFFLREYHIAITPGIGFGRS---GSGFVRFSS--LGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             TTCC--------TTTHHHHHHHHHSEECEEGGGGCGG---GTTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred             CCCC--------HHHHHHHHHHhCCEEEeChhHhCCC---CCCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence            2111        1135666666669999886543210   023499984  579999999999999988654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=3.3e-27  Score=238.83  Aligned_cols=335  Identities=14%  Similarity=0.124  Sum_probs=212.2

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      ++.-|+|++++.   . .+|.+.+++.+++++. +.........++..+...++++++++++|.+  ..++.++|++|+.
T Consensus        19 ~~~iyld~~~~~---~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~   94 (400)
T 3vax_A           19 SHMTYLDAAATT---R-VDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN   94 (400)
T ss_dssp             ---CCCCCCCCS---S-SCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred             CCcEEecCCCCC---C-CCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence            455688887753   2 5799999999998763 2211111111123456789999999999975  5666688889999


Q ss_pred             hhhhhhc----cCCc-EEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          184 SAIPCFC----KKGD-LIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       184 ~ai~~~~----~~gd-iI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .+++++.    ++|| .|+++...|.++...+..   .|.+++.++.+     |+++|++.+++          ++++|+
T Consensus        95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~  164 (400)
T 3vax_A           95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP----------DTLLVS  164 (400)
T ss_dssp             HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT----------TEEEEE
T ss_pred             HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC----------CceEEE
Confidence            9999997    8999 999999999887665543   58888888765     67777766532          378999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee-cc
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT-GS  328 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~-~~  328 (483)
                      ++++++++|.+.|+++|.++|++||+++|+||+|++|...         .++... +|++++|++|.+|+.| |+++ .+
T Consensus       165 ~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~  234 (400)
T 3vax_A          165 LMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---------GDLTTP-IDMISISGHKIGAPKGVGALVTRR  234 (400)
T ss_dssp             CCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG---------GGGGSC-CSEEEEETGGGTSCSSCEEEEECB
T ss_pred             EECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC---------cChhhc-CcEEEEeHHHhCCCCceEEEEEec
Confidence            9999999999999999999999999999999999875432         111112 4899999999877654 6666 55


Q ss_pred             H-HHH---HHHHhcC----Cceee-cCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCC-
Q 011567          329 A-RVV---DHQRLSS----SGYVF-SASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPE-  397 (483)
Q Consensus       329 ~-~~~---~~~~~~~----~~~~f-s~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-  397 (483)
                      + ++.   ..++...    ....+ ..+.++..++++.++++.+.+. ++..++++++.+++.+.|+ .+++.+..+.. 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~  313 (400)
T 3vax_A          235 REEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDH  313 (400)
T ss_dssp             CSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTS
T ss_pred             chhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCccc
Confidence            4 111   1111110    00111 2345677777777788876543 5688899999999999998 77888775433 


Q ss_pred             --CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCC-----CCceEEEc-cCCCC
Q 011567          398 --SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRL-----PVGIRLFV-SAAHS  460 (483)
Q Consensus       398 --~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~-----~~~lRi~~-~~~~t  460 (483)
                        ..++.+.+...      +   ..++.+.+.  +||.+.++..+...         ....     +..+||++ +..+|
T Consensus       314 ~~~~~~~~~~~~~------~---~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t  382 (400)
T 3vax_A          314 VVPHILNLSFEDV------D---AEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT  382 (400)
T ss_dssp             BCTTEEEEECTTC------C---HHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---
T ss_pred             CCCCEEEEEeCCC------C---HHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC
Confidence              35777776421      1   224555544  47766543211100         0000     24599999 99999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAV  477 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~  477 (483)
                      ++|+++++++|++++++
T Consensus       383 ~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          383 DLDVEELARGVAKLKPS  399 (400)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999988753

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.95  E-value=3.8e-26  Score=234.95  Aligned_cols=338  Identities=16%  Similarity=0.200  Sum_probs=226.4

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHH--HHHH-HHHHhhhCCCCEEE-ecccHHHHH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVH--LDCE-ARIAKFLGTPDSIL-YSYGLSTMF  183 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~--~~l~-~~La~~~g~e~~i~-~~sG~~a~~  183 (483)
                      +.|++.++ |+    .+|++.+++.+++. .|+.+.++++.+.|+....  .+++ +++++++|.+.+.+ ++||++|+.
T Consensus        46 ~~i~l~~~~~~----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~  121 (447)
T 3h7f_A           46 DTLEMIASENF----VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANA  121 (447)
T ss_dssp             HSEECCTTCCC----CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred             CceeEecCCCC----CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHH
Confidence            45777665 44    37999999999885 6766666666555554433  5566 99999999988777 799999999


Q ss_pred             hhhhhhccCCcEEEEcCCchhH-HHhHh--hhc--CCeEEEec------CCCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          184 SAIPCFCKKGDLIVADEGVHWG-IQNGL--YLS--RSTVVYFK------HNDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s-~~~g~--~~s--~~~v~~~~------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      .++.++.++||.|++..+.|.+ +..+.  ...  +..++.++      +.|+++|++.+++..         +++|++.
T Consensus       122 ~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~i~~~  192 (447)
T 3h7f_A          122 AVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR---------PKVIIAG  192 (447)
T ss_dssp             HHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC---------CSEEEEE
T ss_pred             HHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC---------CeEEEEc
Confidence            9999999999999999988866 32222  222  23444444      248899998886532         3466664


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARV  331 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~  331 (483)
                      ...++++.  ++++|+++|++||+++|+||+|+.|... .|.    +.+.. ..+|+++.|++|+++ +.|||+++++++
T Consensus       193 ~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~-~g~----~~~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~  264 (447)
T 3h7f_A          193 WSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVA-AGL----HPSPV-PHADVVSTTVHKTLGGGRSGLIVGKQQY  264 (447)
T ss_dssp             CSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHH-TTS----SCCST-TTCSEEEEESSGGGCCCSCEEEEECGGG
T ss_pred             CCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhc-CCC----CCCCC-CCCcEEEecCCcCCCCCCeEEEEECHHH
Confidence            33333333  9999999999999999999998766432 122    11211 345899999999996 678999999998


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccC----CCceeec-CCCCCEEEEE
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI----HGLSIAS-NPESPIVFLI  404 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~-~~~~~i~~l~  404 (483)
                      ++.++....++.+++..++.. +++.+++..+.+  .++..+++.++.+++.+.|.+.    +|+++.. ...++++++.
T Consensus       265 ~~~l~~~~~~~~~~~~~~~~~-~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~  343 (447)
T 3h7f_A          265 AKAINSAVFPGQQGGPLMHVI-AGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVD  343 (447)
T ss_dssp             HHHHHHHHTTTTCSSCCHHHH-HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEE
T ss_pred             HHHHhhhcCCcccCCccHHHH-HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEE
Confidence            887765544444444433333 333344544322  2457888999999999999875    4777754 2356777777


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccCC----CCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSAA----HSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~~----~t~edi~~~~~~l~~~~~~  477 (483)
                      +.....    +.    +.+..+|++.||.+.....+.. .....+.++|++++..    +|++|+++++++|++++.+
T Consensus       344 ~~~~~~----~~----~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          344 LRDSPL----DG----QAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             CTTSSC----CH----HHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCC----CH----HHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            743211    11    2344467777999873211110 0001245699987654    7899999999999998754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.95  E-value=1.5e-26  Score=238.52  Aligned_cols=335  Identities=15%  Similarity=0.127  Sum_probs=210.3

Q ss_pred             EEEeec-CCCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCC----EEEe-cccH
Q 011567          111 VVNFAS-ANYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPD----SILY-SYGL  179 (483)
Q Consensus       111 ~id~~s-~~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~----~i~~-~sG~  179 (483)
                      .|++.. .||    .+|.|.+|+...+ .+|+.|++++|.+.|+ +...++|    +++++++|.+.    +.++ +||+
T Consensus        56 ~i~lias~n~----~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~-~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt  130 (490)
T 2a7v_A           56 GLELIASENF----CSRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS  130 (490)
T ss_dssp             SEECCTTCCC----CCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CceEECCCCC----CCHHHHHHHHHHHcCCCccCCCcccccCcc-HHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchH
Confidence            445544 466    4799999998887 4588888888865554 3344555    99999999886    4444 6999


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHh--------HhhhcCCe--EEEec------CCCHHHHHHHHHHhhhhhhhcc
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSRST--VVYFK------HNDMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~--------g~~~s~~~--v~~~~------~~d~~~Le~~l~~~~~~~~~~~  243 (483)
                      +||..++.+++++||.|+++...|.+...        .+.+++..  ++.++      +.|+++|++.+++..       
T Consensus       131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~-------  203 (490)
T 2a7v_A          131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-------  203 (490)
T ss_dssp             HHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcC-------
Confidence            99999999999999999999888765321        23345542  33443      348999999886532       


Q ss_pred             CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC
Q 011567          244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG  322 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G  322 (483)
                        +++|++....  .|...|+++|+++|++||++|++|++|..|.++. |... ..+    ..+|++++|++|+| |+.|
T Consensus       204 --~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~-g~~~-~~~----~~aDiv~~S~hK~l~Gp~G  273 (490)
T 2a7v_A          204 --PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAA-KVIP-SPF----KHADIVTTTTHKTLRGARS  273 (490)
T ss_dssp             --CSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT-TSSC-CGG----GTCSEEEEESSGGGCSCSC
T ss_pred             --CcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccC-CcCC-CCC----CCCCEEEECCcccCccccc
Confidence              3466654322  2567799999999999999999999998776542 2111 111    24599999999999 5779


Q ss_pred             ceeeccHH---------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhc
Q 011567          323 GFCTGSAR---------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       323 G~i~~~~~---------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      |+++++++               +.+.++....+..+++ .++..+++..++++...  +.++..+++.+++++|.+.|.
T Consensus       274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qgg-p~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~  352 (490)
T 2a7v_A          274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG-PHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL  352 (490)
T ss_dssp             EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCS-CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99988764               4455543322222222 34444444444555543  225678899999999999999


Q ss_pred             cCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCCC
Q 011567          386 DIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHS  460 (483)
Q Consensus       386 ~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~t  460 (483)
                      +. |+++.. ..+++++++.+.+...    +   ..++.+ .|++.||.+.....|.......+.+||+..+    ..++
T Consensus       353 ~~-G~~v~~~~t~t~lv~vdl~~~g~----~---~~~~~~-~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~  423 (490)
T 2a7v_A          353 ER-GYSLVSGGTDNHLVLVDLRPKGL----D---GARAER-VLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR  423 (490)
T ss_dssp             HT-TCEEGGGSCSSSEEEEECTTTTC----C---HHHHHH-HHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred             Hc-CcEEecCCCCCeEEEEEeCCCCC----C---HHHHHH-HHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCC
Confidence            86 998864 3457888888754211    1   123333 5667799998764443221223567999654    4689


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISAV  477 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~~  477 (483)
                      ++|++++++.|.+++..
T Consensus       424 ~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          424 EDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998864

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.95  E-value=1.1e-25  Score=232.70  Aligned_cols=350  Identities=14%  Similarity=0.118  Sum_probs=227.3

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      .|+.||||.++..     .+.+.+++.+++.. +.      ..|+..+...+|+++++++++.++++++++|++|+..++
T Consensus        41 ~g~~ylD~~~~~~-----~~~v~~a~~~~~~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al  108 (467)
T 1ax4_A           41 SSAVYIDLLTDSG-----TNAMSDHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILF  108 (467)
T ss_dssp             GGGCSEECSCSSS-----CCCEEHHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred             CCceeeecccCcC-----CHHHHHHHHHHHhh-cc------cccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHH
Confidence            5788999976522     17888888887764 21      134455677899999999999988888899999999999


Q ss_pred             hhhcc----CCcE---EEEcCCchhHHHhHhhhcCCeEEEec------------C---CCHHHHHHHHHHhhhhhhhccC
Q 011567          187 PCFCK----KGDL---IVADEGVHWGIQNGLYLSRSTVVYFK------------H---NDMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       187 ~~~~~----~gdi---I~~~~~~h~s~~~g~~~s~~~v~~~~------------~---~d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      +++.+    +||.   |++....|.++...+...|.+++...            .   .|+++|++.+++....      
T Consensus       109 ~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~------  182 (467)
T 1ax4_A          109 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD------  182 (467)
T ss_dssp             HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG------
T ss_pred             HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCC------
Confidence            99887    8996   66664334555667777777766432            1   2788999888754211      


Q ss_pred             ccEEEEEecccCCC-CCccC---hHHHHHHHHHcCcEEEEeCcccc-ccc-------cCCCCcccccc-CCCCCceeEEE
Q 011567          245 LRRYIVVEAVYQNS-GQIAP---LDELIRLKEKYRFRVFLDESNSF-GVL-------GRSGRGLTEHC-GVPVDKIDIVT  311 (483)
Q Consensus       245 ~~~~iv~e~v~~~~-G~i~~---L~~l~~l~~k~~~~li~DEa~s~-g~l-------g~~G~g~~~~~-~v~~~~~Di~~  311 (483)
                      ++++|+++++++++ |.+.|   +++|+++|++||++||+||++.+ +.+       +..|..+.+.. ++ ...+|+++
T Consensus       183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~  261 (467)
T 1ax4_A          183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM-YKYADALT  261 (467)
T ss_dssp             GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH-GGGCSEEE
T ss_pred             CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh-ccccceEE
Confidence            37899999999988 77665   78999999999999999999865 222       22121111100 00 01247888


Q ss_pred             ccccccccCC-Cceeecc-H-HHHHHHHhcC---Cc-eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          312 AAMGHALATE-GGFCTGS-A-RVVDHQRLSS---SG-YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       312 ~s~~K~lg~~-GG~i~~~-~-~~~~~~~~~~---~~-~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      .|++|++|.. ||+++++ + ++++.++...   .+ ..++ ..+....+++..+++...+ ++..++..++.+++.+.|
T Consensus       262 ~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L  339 (467)
T 1ax4_A          262 MSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYG-GLAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRL  339 (467)
T ss_dssp             EETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTT-TCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccC-CccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Confidence            9999999866 8888877 6 7776654321   11 1122 2233222223335554432 235555667888899999


Q ss_pred             ccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-eccc-cc----c--cCCCCCceEEEcc
Q 011567          385 SDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRS-ML----D--KCRLPVGIRLFVS  456 (483)
Q Consensus       385 ~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~-~~----~--~~~~~~~lRi~~~  456 (483)
                      .+ .++++..+..+..+++.+..-............+++..+++++||.+.+ +.+. ..    .  .......|||+++
T Consensus       340 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~  418 (467)
T 1ax4_A          340 RE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA  418 (467)
T ss_dssp             HH-TTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred             Hh-CCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecc
Confidence            87 4777765566777777731100000001112346777764666999987 3220 00    0  0000145999998


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHH
Q 011567          457 -AAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       457 -~~~t~edi~~~~~~l~~~~~~~  478 (483)
                       ..+|++|+++++++|++++++.
T Consensus       419 ~~~~t~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          419 RRVYTNDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             TTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhh
Confidence             4589999999999999988764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.95  E-value=1.4e-25  Score=223.83  Aligned_cols=308  Identities=14%  Similarity=0.126  Sum_probs=218.9

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      +++|||+++ |.+|+.  |.+  +    +.  ..      ..|+... ..++++.+|+++|.+  +.++.++|++++..+
T Consensus        29 ~~~i~l~~~~~~~~~~--~~v--a----~~--~~------~~Y~~~~-~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~   91 (356)
T 1fg7_A           29 NGDVWLNANEYPTAVE--FQL--T----QQ--TL------NRYPECQ-PKAVIENYAQYAGVKPEQVLVSRGADEGIELL   91 (356)
T ss_dssp             TCSEECSSCCCSSCCC--CCC--C----CC--CT------TSCCCSS-CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHH
T ss_pred             CceEEeeCCCCCCCCC--HhH--h----hh--hh------ccCCCcc-HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHH
Confidence            468999998 788873  555  1    11  11      1233222 578999999999864  445556667999999


Q ss_pred             hhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          186 IPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       186 i~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++++++| |.|++..+.|.++...++..|.+++.++.+     |++++++.++    +       +++|+++++++++|
T Consensus        92 ~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~-------~~~v~l~~p~nptG  160 (356)
T 1fg7_A           92 IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD----G-------VKVVYVCSPNNPTG  160 (356)
T ss_dssp             HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT----T-------EEEEEEESSCTTTC
T ss_pred             HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc----C-------CCEEEEeCCCCCCC
Confidence            99999999 999999999999888888889998888753     5555555442    2       56777778888999


Q ss_pred             CccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567          260 QIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD  333 (483)
Q Consensus       260 ~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~  333 (483)
                      .+.|.   ++|+++|+ ||+++|+||+|+.+..   +..+....+.  .+.++++.|+||++|..|   ||+++++++++
T Consensus       161 ~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~---~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  234 (356)
T 1fg7_A          161 QLINPQDFRTLLELTR-GKAIVVADEAYIEFCP---QASLAGWLAE--YPHLAILRTLSKAFALAGLRCGFTLANEEVIN  234 (356)
T ss_dssp             CCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG---GGCSGGGTTT--CTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC---CCcHHHHHhh--CCCEEEEecchHhhcCchhhhEEEEeCHHHHH
Confidence            99985   55556666 9999999999986431   1222222221  234788899999998666   99999999998


Q ss_pred             HHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      .++.....|    +.+++.++++.++++....  .++..++++++.+++.+.|++++++....+..++++++.++     
T Consensus       235 ~l~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-----  305 (356)
T 1fg7_A          235 LLMKVIAPY----PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-----  305 (356)
T ss_dssp             HHHHHSCSS----CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-----
T ss_pred             HHHHhcCCC----CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-----
Confidence            887654443    4577777777777764321  34567888889999999998875432233456788888873     


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         +   ..++.+.+ .++||.+.+ +..+..     ++.+||+++   +++|+++++++|+++
T Consensus       306 ---~---~~~l~~~L-~~~gI~v~~~g~~~~~-----~~~iRis~~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          306 ---A---SSAVFKSL-WDQGIILRDQNKQPSL-----SGCLRITVG---TREESQRVIDALRAE  354 (356)
T ss_dssp             ---T---HHHHHHHH-HHTTEECEECTTSTTC-----TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred             ---C---HHHHHHHH-HHCCEEEEECCCCCCC-----CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence               1   23566665 567999988 543321     245999985   689999999998753

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.2e-26  Score=236.53  Aligned_cols=336  Identities=15%  Similarity=0.195  Sum_probs=237.6

Q ss_pred             cCCCCCC--CCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhh
Q 011567          116 SANYLGL--IGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       116 s~~~lG~--~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~  188 (483)
                      +++++|.  .+++.+.+++.+++.++... ...+..+.+......++.+++++++|.+    ..+++++|++|+..++++
T Consensus        66 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a  145 (497)
T 3mc6_A           66 EGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLS  145 (497)
T ss_dssp             GTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHH
T ss_pred             CCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHH
Confidence            4456664  24578999999999886432 2223333445567778889999999876    466778999999999988


Q ss_pred             hcc-----CC---cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          189 FCK-----KG---DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       189 ~~~-----~g---diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +.+     +|   |.|+++.+.|.++..++...|.+++.++.+      |+++|++.+++          .+++|+++.+
T Consensus       146 ~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~p  215 (497)
T 3mc6_A          146 AKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINK----------NTVLLVGSAP  215 (497)
T ss_dssp             HHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCS----------SEEEEEEETT
T ss_pred             HHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhh----------CCEEEEEECC
Confidence            754     45   899999999999999999999999888754      46666665532          3688999999


Q ss_pred             cCCCCCccChHHHHHHHHHcCcEEEEeCcccccccc---CCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccH
Q 011567          255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLG---RSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSA  329 (483)
Q Consensus       255 ~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg---~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~  329 (483)
                      ++++|.+.|+++|+++|++||+++|+||+|+.+...   ..|.+....+......+|+++.|++|++ ++.| |+++.++
T Consensus       216 ~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~  295 (497)
T 3mc6_A          216 NFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN  295 (497)
T ss_dssp             CTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS
T ss_pred             CCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC
Confidence            999999999999999999999999999999865422   1222222112222345699999999997 4333 7776666


Q ss_pred             HHHHHHHh-cCC--------ceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhcc-CCCceeecCCC
Q 011567          330 RVVDHQRL-SSS--------GYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSD-IHGLSIASNPE  397 (483)
Q Consensus       330 ~~~~~~~~-~~~--------~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~  397 (483)
                      +.+..... ...        ...+.++.+....++..++++.+...  .+..++..++++++++.|++ ++|+.+..++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~  375 (497)
T 3mc6_A          296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR  375 (497)
T ss_dssp             HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC
T ss_pred             HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            55443211 001        11122233444455555566655432  46788889999999999999 68999876667


Q ss_pred             CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          398 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       398 ~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+++.+.....         ...++.+.++ ++||.+.....        +.++|++++ .+|++|+++++++|++++++
T Consensus       376 ~~~v~~~~~~~---------~~~~l~~~L~-~~Gi~v~~~~~--------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          376 YSVISFSSKTL---------NIHELSDRLS-KKGWHFNALQK--------PVALHMAFT-RLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             SSEEEEECTTT---------THHHHHHHHH-TTTCBCEECCS--------SCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred             eeEEEEeCCCC---------CHHHHHHHHH-hCCEEEecCCC--------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence            77877765311         1335677654 46998865433        245899998 78999999999999999988


Q ss_pred             HHh
Q 011567          478 VLR  480 (483)
Q Consensus       478 ~~~  480 (483)
                      +..
T Consensus       437 ~~~  439 (497)
T 3mc6_A          437 LKS  439 (497)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            754

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.94  E-value=2.4e-25  Score=224.48  Aligned_cols=315  Identities=16%  Similarity=0.169  Sum_probs=224.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH  203 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h  203 (483)
                      .|++.+++.+++++...       .|+..+...++++++++++|.++.+++++|++|+..+++++ .++||.|+++.+.|
T Consensus        16 ~~~~~~a~~~~l~~~~~-------~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~   88 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQW-------WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTF   88 (388)
T ss_dssp             CHHHHHHHHHHHHTSCC-------BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred             CHHHHHHHHHHHHcCCe-------eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence            38899999999986211       23334678899999999999999999999999999999999 88999999999999


Q ss_pred             hHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567          204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR  277 (483)
Q Consensus       204 ~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~  277 (483)
                      .++...+...|.+++.++.+      |+++|++.++.          .+++|+   +.+++|.+.|+++|.++|++||++
T Consensus        89 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~  155 (388)
T 1b9h_A           89 ISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP----------RTKVIM---PVHMAGLMADMDALAKISADTGVP  155 (388)
T ss_dssp             THHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc----------CceEEE---EeCCccCcCCHHHHHHHHHHcCCE
Confidence            99999999999999888753      67777776632          256666   456689999999999999999999


Q ss_pred             EEEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccc-cCCCceeeccHH-H--HHHHHhc-CCc-------ee
Q 011567          278 VFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HAL-ATEGGFCTGSAR-V--VDHQRLS-SSG-------YV  343 (483)
Q Consensus       278 li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~l-g~~GG~i~~~~~-~--~~~~~~~-~~~-------~~  343 (483)
                      +|+||+|+.|... .|..+ ..++      |+.+.||+  |++ |+.||+++++++ +  ++.++.. ..+       |.
T Consensus       156 li~D~a~~~g~~~-~~~~~-~~~~------~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (388)
T 1b9h_A          156 LLQDAAHAHGARW-QGKRV-GELD------SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYF  227 (388)
T ss_dssp             BCEECTTCTTCEE-TTEEG-GGSS------SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCC
T ss_pred             EEEecchhcCCcc-CCeec-cccc------ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccce
Confidence            9999999976432 22221 1121      45555666  777 456799888765 5  5554321 111       10


Q ss_pred             -----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC------CCCCEEEEEecCCCCCc
Q 011567          344 -----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN------PESPIVFLILEKSTGSM  412 (483)
Q Consensus       344 -----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~------~~~~i~~l~l~~~~~~~  412 (483)
                           ++..++++.++++.+.++.++   +.+++.+++.+++.+.|++++++.+...      ..++++++.++..    
T Consensus       228 ~~~~g~~~~~~~~~~a~~~~~~~~l~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  300 (388)
T 1b9h_A          228 HKIAGSNMRLNEFSASVLRAQLARLD---EQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL----  300 (388)
T ss_dssp             CCSCCCBCBCBHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC----
T ss_pred             eecccccCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc----
Confidence                 112357777776666665543   4677888899999999998878877642      2356888887431    


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeeccccccc------C-----------CCC-------CceEEEccCCC-CHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDK------C-----------RLP-------VGIRLFVSAAH-SEADLVKA  467 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~------~-----------~~~-------~~lRi~~~~~~-t~edi~~~  467 (483)
                        ......++.+.+. ++||.++....+....      .           ..+       ..||++++..+ |++||+++
T Consensus       301 --~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~  377 (388)
T 1b9h_A          301 --TEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHAT  377 (388)
T ss_dssp             --CHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHH
T ss_pred             --CcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHH
Confidence              0112345677655 4699998654332100      0           001       13999999999 99999999


Q ss_pred             HHHHHHHHHH
Q 011567          468 CESLKRISAV  477 (483)
Q Consensus       468 ~~~l~~~~~~  477 (483)
                      +++|++++++
T Consensus       378 ~~~l~~~~~~  387 (388)
T 1b9h_A          378 AEIIADAVAR  387 (388)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.94  E-value=1.2e-25  Score=225.34  Aligned_cols=313  Identities=12%  Similarity=0.071  Sum_probs=213.9

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLIVAD  199 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~  199 (483)
                      .+|++.+++.+++...    .    .....+...++++++++++|.+   +.+++ ++|++++..+++++.++||.|++.
T Consensus        30 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~  101 (376)
T 3f0h_A           30 SSEEVRAIGAEQVPYF----R----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVI  101 (376)
T ss_dssp             CCHHHHHHHTSCCCCC----S----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEE
T ss_pred             CcHHHHHHhcCCCCCC----C----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEE
Confidence            4578877776544211    0    1122357788999999999975   45553 677999999999999999977776


Q ss_pred             CC-chhHH-HhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          200 EG-VHWGI-QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       200 ~~-~h~s~-~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      .+ +|... ...+...|.+++.++.+     |+++|++.+.   .       ++++|+++++++++|.+.|+++|+++|+
T Consensus       102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~---~-------~~~~v~~~~~~nptG~~~~l~~i~~l~~  171 (376)
T 3f0h_A          102 DGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN---Q-------NFTGLLVNVDETSTAVLYDTMMIGEFCK  171 (376)
T ss_dssp             ESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT---S-------CCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             eCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc---c-------CceEEEEecccCCcceecCHHHHHHHHH
Confidence            65 44322 23455567777766542     6677765431   1       3678888888899999999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCC-ce-------
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-GY-------  342 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~-~~-------  342 (483)
                      +||+++|+||++++|....    -.+.+     ++|++++|++|+++ +.| |+++.++++++.++.... ++       
T Consensus       172 ~~~~~li~D~~~~~~~~~~----~~~~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (376)
T 3f0h_A          172 KNNMFFVCDCVSAFLADPF----NMNEC-----GADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDA  242 (376)
T ss_dssp             HTTCEEEEECTTTTTTSCC----CHHHH-----TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHH
T ss_pred             HcCCEEEEEcCccccCccc----ccccc-----CccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHH
Confidence            9999999999998753310    01122     24899999999998 445 788899998887764211 11       


Q ss_pred             -------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567          343 -------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM  412 (483)
Q Consensus       343 -------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~  412 (483)
                             ....+.+...++++.++++.+.+.   +++.++.+++.+++.+.|+++ ++.+..+..++.+........   
T Consensus       243 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~---  318 (376)
T 3f0h_A          243 LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTA---  318 (376)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSS---
T ss_pred             HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCC---
Confidence                   011233455556677788877654   567888889999999999886 676654433333332222110   


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                        +   ..++.+.++++.||.+.++..+.     .+..+|++++..+|++|+++++++|++++++
T Consensus       319 --~---~~~l~~~l~~~~gi~v~~g~~~~-----~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          319 --N---AYDIFLKLKDEYGIWICPNGGEM-----KDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             --C---HHHHHHHHHHHSSEECEECCGGG-----TTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             --C---HHHHHHHHHHhCCEEEecCcccc-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence              1   23567766665599998763221     1244999999999999999999999998754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=7.7e-26  Score=224.34  Aligned_cols=311  Identities=13%  Similarity=0.097  Sum_probs=220.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLIVAD  199 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~  199 (483)
                      .+|.+.+++.+++..+       + .+...+...++++++++++|.+   +.+++ ++|++|+..+++++.+  |.|++.
T Consensus        11 ~~~~v~~a~~~~~~~~-------~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~   80 (353)
T 2yrr_A           11 IPERVQKALLRPMRGH-------L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL   80 (353)
T ss_dssp             CCHHHHGGGGSCCCCT-------T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred             CCHHHHHHHhcccccc-------c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence            4688888776655431       0 1122356889999999999973   44555 7778999999998876  556665


Q ss_pred             CCchhHH--HhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567          200 EGVHWGI--QNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE  272 (483)
Q Consensus       200 ~~~h~s~--~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~  272 (483)
                      ...|.+.  ...+...|.+++.++.     .|+++|++.+++.         ++++|+++++++++|.+.|+++|.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~~~~i~~l~~  151 (353)
T 2yrr_A           81 VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR---------RYRMVALVHGETSTGVLNPAEAIGALAK  151 (353)
T ss_dssp             ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS---------CCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC---------CCCEEEEEccCCCcceecCHHHHHHHHH
Confidence            6566553  3445667888887774     4788888887642         1567888899999999999999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHh-c-----------
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRL-S-----------  338 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~-~-----------  338 (483)
                      +||+++|+||+|++|...   ..+ ..+     ++|++++|++|+++ +.| |++++++++++.++. .           
T Consensus       152 ~~~~~li~D~a~~~~~~~---~~~-~~~-----~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~  222 (353)
T 2yrr_A          152 EAGALFFLDAVTTLGMLP---FSM-RAM-----GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAE  222 (353)
T ss_dssp             HHTCEEEEECTTTTTTSC---CCH-HHH-----TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHH
T ss_pred             HcCCeEEEEcCccccccc---ccc-ccc-----CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhh
Confidence            999999999999865331   111 112     24899999999774 445 899999998876641 0           


Q ss_pred             -CCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCch
Q 011567          339 -SSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMK  413 (483)
Q Consensus       339 -~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~  413 (483)
                       .....+..+.++..++++.++++.+.+  .++.+++++++.+++.+.|+++ |+++..+.  .+.++++.++...    
T Consensus       223 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----  297 (353)
T 2yrr_A          223 HWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV----  297 (353)
T ss_dssp             HHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC----
T ss_pred             hhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC----
Confidence             001223345577777777778887643  2467889999999999999987 88876543  4556677764211    


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH-HHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV-KACESLKRISAV  477 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~-~~~~~l~~~~~~  477 (483)
                       +   ..++.+.+.+ +||.+.+...+..     +..+|++++..+|++|++ +++++|+++++.
T Consensus       298 -~---~~~~~~~l~~-~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          298 -D---ADRLVRALYA-EGVAVAGGIGPTR-----GQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             -C---HHHHHHHHHH-TTEECEECCGGGT-----TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             -C---HHHHHHHHHH-CCEEEeCCccccC-----CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence             1   2356766555 5999987653221     245999998888999999 999999988753

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.94  E-value=1.7e-25  Score=226.67  Aligned_cols=288  Identities=17%  Similarity=0.146  Sum_probs=211.1

Q ss_pred             ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHH
Q 011567          152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS  227 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~  227 (483)
                      ..+...++++++++++|.++++++++|++|+..+++++.++||.|+++.+.|.++...+    ...|.++..++.+|+++
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~  142 (398)
T 1gc0_A           63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQA  142 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence            34678999999999999999999999999999999999999999999999888877665    56688898898889888


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +++.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.|.++.   .+  .     .++
T Consensus       143 l~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~--~-----~~~  202 (398)
T 1gc0_A          143 LEAAMTP----------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---PL--E-----LGA  202 (398)
T ss_dssp             HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---GG--G-----GTC
T ss_pred             HHHhcCC----------CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC---ch--h-----hCc
Confidence            8877643          37899999999999999999999999999999999999998776532   11  1     234


Q ss_pred             eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      |+++.|++|++++.    ||+++++++.++ .++..... .++.+.+|..++++.++++.+   +...++..++.+.+.+
T Consensus       203 d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~  278 (398)
T 1gc0_A          203 DLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGIKTL---NLRMDRHCANAQVLAE  278 (398)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred             eEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHHHH
Confidence            89999999999843    689988887665 34332211 134567888888887777654   3466777788888888


Q ss_pred             hhccCCCc--------------eeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc------
Q 011567          383 GLSDIHGL--------------SIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR------  439 (483)
Q Consensus       383 ~L~~~~~~--------------~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~------  439 (483)
                      .|.+.+++              .+..   ...++++.+.++.       ...   + +..++++.|+.......      
T Consensus       279 ~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~---~-~~~~l~~~~i~~~~~s~G~~~sl  347 (398)
T 1gc0_A          279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------GIG---A-GRRFMNALQLFSRAVSLGDAESL  347 (398)
T ss_dssp             HHHTCTTEEEEEEC----------------CCTTEEEEEETT-------HHH---H-HHHHHHHCSSSEECSCCSCSSCE
T ss_pred             HHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------CHH---H-HHHHHHhCCCceeccCCCCccee
Confidence            88765432              2221   1357888888742       111   1 23345556776654211      


Q ss_pred             ---cc-cccCC-----------CCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          440 ---SM-LDKCR-----------LPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       440 ---~~-~~~~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                         +. ..++.           .+..||++++..+++++|+.+.++|+++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence               10 00111           1245999999999999999999988764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.94  E-value=8.3e-26  Score=228.94  Aligned_cols=323  Identities=14%  Similarity=0.182  Sum_probs=230.0

Q ss_pred             eeEEEeecCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567          109 KEVVNFASAN-YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       109 ~~~id~~s~~-~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~  187 (483)
                      ++||||.++. .++    |++.+++.++++..         .|+..+...++++.+++++|.++.+++++|++|+..+++
T Consensus        30 ~~~id~~~~~~~~~----~~v~~a~~~~~~~~---------~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~   96 (399)
T 2oga_A           30 VPFLDLKAAYEELR----AETDAAIARVLDSG---------RYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALR   96 (399)
T ss_dssp             BCSCCHHHHHHHTH----HHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHH
T ss_pred             CcccccCcCCCCCC----HHHHHHHHHHHhcC---------CCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHH
Confidence            4789998862 222    89999999988762         233346788999999999999989999999999999999


Q ss_pred             hh-ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          188 CF-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       188 ~~-~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      ++ .++||.|++..+.|.++...++..|.+++.++.+      |+++|++.+++          ++++|+++   +++|.
T Consensus        97 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~---n~tG~  163 (399)
T 2oga_A           97 GLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP----------RTRALLPV---HLYGH  163 (399)
T ss_dssp             HTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT----------TEEEECCB---CGGGC
T ss_pred             HhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC----------CCeEEEEe---CCcCC
Confidence            99 8899999999999999999999999988887642      67777766642          25666643   45799


Q ss_pred             ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc--cccccC--CCceeecc-HHHHHHH
Q 011567          261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT--EGGFCTGS-ARVVDHQ  335 (483)
Q Consensus       261 i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~--~GG~i~~~-~~~~~~~  335 (483)
                      +.|+++|.++|++||+++|+||+|+.|... .+..    ++.-   .|+++.|+  +|++|+  .||+++++ +++++.+
T Consensus       164 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~----~~~~---~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l  235 (399)
T 2oga_A          164 PADMDALRELADRHGLHIVEDAAQAHGARY-RGRR----IGAG---SSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERL  235 (399)
T ss_dssp             CCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEE----TTCT---TCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEEECcccccCcc-CCee----cccc---cCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHH
Confidence            999999999999999999999999977532 2322    2211   28888898  799986  56888775 7877665


Q ss_pred             Hhc-CCce---------eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC--CCE-EE
Q 011567          336 RLS-SSGY---------VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE--SPI-VF  402 (483)
Q Consensus       336 ~~~-~~~~---------~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~--~~i-~~  402 (483)
                      +.. ..+.         .+...++++.++++.++++.++   +..++.+++.+++.+.|.+++++.+...+.  .++ +.
T Consensus       236 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~  312 (399)
T 2oga_A          236 RMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD---SWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHL  312 (399)
T ss_dssp             HHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSS
T ss_pred             HHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEE
Confidence            431 1111         1222467888888888887664   366777888999999999887776643221  122 11


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-----------cCCCC-------CceEEEccCCCCHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-----------KCRLP-------VGIRLFVSAAHSEADL  464 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-----------~~~~~-------~~lRi~~~~~~t~edi  464 (483)
                      +.+...      +   ..++.+.+ .++||.+.+.......           ....|       ..|||+++..+|++|+
T Consensus       313 ~~~~~~------~---~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi  382 (399)
T 2oga_A          313 FTVRTE------R---RDELRSHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQA  382 (399)
T ss_dssp             EEEECS------S---HHHHHHHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHH
T ss_pred             EEEECC------C---HHHHHHHH-HHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHH
Confidence            222111      1   23566654 4569998763211000           00001       3499999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          465 VKACESLKRISAVV  478 (483)
Q Consensus       465 ~~~~~~l~~~~~~~  478 (483)
                      ++++++|+++++++
T Consensus       383 ~~~~~~l~~~~~~l  396 (399)
T 2oga_A          383 LRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987653

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.94  E-value=8.7e-26  Score=233.47  Aligned_cols=324  Identities=15%  Similarity=0.095  Sum_probs=228.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCCC-CCCCC-CcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhccCC
Q 011567          118 NYLGLIGHEKLLESCTSALEKYGVG-SCGPR-GFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKG  193 (483)
Q Consensus       118 ~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~-~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~~~g  193 (483)
                      |.+|. .++.+.+++.++++.++.. ..+.+ +..+..+...++++++++++|.+  +.++.+++++++..++.++.+++
T Consensus        74 ~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~  152 (465)
T 3e9k_A           74 NSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPT  152 (465)
T ss_dssp             TTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCC
T ss_pred             CccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhcccc
Confidence            45676 5677888888887765421 11111 11233456688999999999965  45566777888888999987554


Q ss_pred             ---cEEEEcCCchhHHHh----HhhhcCCeE-----EEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          194 ---DLIVADEGVHWGIQN----GLYLSRSTV-----VYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       194 ---diI~~~~~~h~s~~~----g~~~s~~~v-----~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                         +.|+++.+.|.+...    .++..|.++     ...+.+     |++++++.+++..+       ++++|+++++++
T Consensus       153 ~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~-------~~~lv~~~~~~n  225 (465)
T 3e9k_A          153 PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD-------SIAVILFSGVHF  225 (465)
T ss_dssp             SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG-------GEEEEEEESBCT
T ss_pred             CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC-------CeEEEEEeCccc
Confidence               458888888877443    444556553     233332     78999998876433       378999999999


Q ss_pred             CCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc--cCCC-ceeeccHHHHH
Q 011567          257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL--ATEG-GFCTGSARVVD  333 (483)
Q Consensus       257 ~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l--g~~G-G~i~~~~~~~~  333 (483)
                      ++|.+.|+++|.++|++||+++|+|++|+.|....         ++...++|++++|++|.+  |+.| |+++.++++.+
T Consensus       226 ~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~---------~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~  296 (465)
T 3e9k_A          226 YTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL---------YLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAH  296 (465)
T ss_dssp             TTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---------CHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTT
T ss_pred             CcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC---------chhhcCCCEEEECcccccccCCCceEEEEEcHHHHh
Confidence            99999999999999999999999999998765431         111123589999999999  4444 78888887766


Q ss_pred             HHHhcCCc---------------eee--------cCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccC-
Q 011567          334 HQRLSSSG---------------YVF--------SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI-  387 (483)
Q Consensus       334 ~~~~~~~~---------------~~f--------s~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~-  387 (483)
                      .++....+               +.+        .++.++..+++..++++.+.+  .++++++.+++.+++.+.|+++ 
T Consensus       297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  376 (465)
T 3e9k_A          297 TIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNY  376 (465)
T ss_dssp             TSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            54322111               111        124677778888888888765  3568889999999999999875 


Q ss_pred             ---------CCceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          388 ---------HGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       388 ---------~~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                               +++++..+.    .++++.+.++..          ..++.+.+ .++||.+....         +..||++
T Consensus       377 ~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L-~~~Gi~v~~~~---------~~~iRis  436 (465)
T 3e9k_A          377 GKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQEL-EKRGVVCDKRN---------PNGIRVA  436 (465)
T ss_dssp             C---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHH-HTTTEECEEET---------TTEEEEB
T ss_pred             cccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHH-HHCCEEEecCC---------CCEEEEe
Confidence                     688877543    277888887521          11356654 45699986321         2459999


Q ss_pred             c-cCCCCHHHHHHHHHHHHHHHHHH
Q 011567          455 V-SAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       455 ~-~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      + +..+|++|+++++++|++++++.
T Consensus       437 ~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          437 PVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHhc
Confidence            8 89999999999999999988653

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.94  E-value=3.5e-25  Score=225.16  Aligned_cols=336  Identities=16%  Similarity=0.170  Sum_probs=219.8

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHH----HHHHHhhhCCCCE-EEecccHHHH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDC----EARIAKFLGTPDS-ILYSYGLSTM  182 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l----~~~La~~~g~e~~-i~~~sG~~a~  182 (483)
                      +.+++.++ |++    +|.+.+++.+++ ..|+.+.++++. |+....+.++    ++.+++++|.+.. +++++|++|+
T Consensus        26 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~  100 (417)
T 3n0l_A           26 EGLEMIASENFT----LPEVMEVMGSILTNKYAEGYPGKRY-YGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQAN  100 (417)
T ss_dssp             HSEECCTTCCCC----CHHHHHHHTBGGGGCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred             cCeeeecccCCC----CHHHHHHHhhhhhccccccCCCccc-cccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHH
Confidence            35666555 553    799999999988 455555544443 3333444444    4588999998766 7789999999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHh---HhhhcC--CeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQN---GLYLSR--STVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~---g~~~s~--~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ..+++++.++||.|+++.+.|.++..   .+...+  ..++.++.     .|+++|++.+++.         ++++|++.
T Consensus       101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~  171 (417)
T 3n0l_A          101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE---------KPKLIVCG  171 (417)
T ss_dssp             HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH---------CCSEEEEC
T ss_pred             HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc---------CCeEEEEC
Confidence            99999999999999999998876543   223332  33444443     4788998888642         14566554


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-AR  330 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~  330 (483)
                      +..  .|.+.|+++|+++|++||+++|+||+|+.|.... |.    +... ...+|++++|++|+|+ +.|||++++ ++
T Consensus       172 ~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~----~~~~-~~~~di~~~s~sK~l~g~~~G~~~~~~~~  243 (417)
T 3n0l_A          172 ASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVA-GE----HPSP-FPYAHVVSSTTHKTLRGPRGGIIMTNDEE  243 (417)
T ss_dssp             CSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS----SCCC-TTTCSEEEEESSTTTCSCSCEEEEESCHH
T ss_pred             Ccc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhc-cc----CCCc-cccceEEEeeCccccCCCCeeEEEECCHH
Confidence            433  3999999999999999999999999987665432 11    1111 1245899999999995 558999988 78


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEecC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILEK  407 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~l~~  407 (483)
                      +.+.++.......+ ++.++..++++.+++....  ...+..+++.++.+++.+.|.+ .|+.+.. ...++++++.+..
T Consensus       244 ~~~~~~~~~~~~~~-~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~  321 (417)
T 3n0l_A          244 LAKKINSAIFPGIQ-GGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLD  321 (417)
T ss_dssp             HHHHHHHHHTTTTC-SSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTT
T ss_pred             HHHHHhhhhCCccc-CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEccc
Confidence            88776544322222 2335555555555665532  2246788888999999999988 4887764 2346677777643


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc-CCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK-CRLPVGIRLFVSA----AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~-~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~  477 (483)
                      ...    +   ...+.+ .|+++||.+.+...+.... ...+.++|++++.    .+|++|+++++++|++++++
T Consensus       322 ~~~----~---~~~~~~-~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          322 REF----S---GKDADL-ALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             SSS----C---HHHHHH-HHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCC----C---HHHHHH-HHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            211    1   123444 4566799998765443211 1123569998653    36899999999999998864

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.94  E-value=2.1e-26  Score=234.00  Aligned_cols=321  Identities=13%  Similarity=0.077  Sum_probs=221.6

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CCC-------CE--EEeccc
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GTP-------DS--ILYSYG  178 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~e-------~~--i~~~sG  178 (483)
                      .++|||+.++|+++.++|.+.+++.++......       .|+......+|++.+++++ |.+       +.  ..+++|
T Consensus        41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~-------~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g  113 (409)
T 4eu1_A           41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNM-------DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG  113 (409)
T ss_dssp             SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCC-------CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred             cCceeeeeeEEECCCCCEeecHHHHhcCccccc-------cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence            368999999998887888888888877221111       2222223467888888876 532       23  235777


Q ss_pred             HHHHHh---hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          179 LSTMFS---AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       179 ~~a~~~---ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      ++++..   ++++++++||.|+++.++|.++...++..|.+++.++.+       |+++|++.+++...       ++++
T Consensus       114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~  186 (409)
T 4eu1_A          114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPE-------GSVI  186 (409)
T ss_dssp             HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCT-------TCEE
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCC-------CcEE
Confidence            777664   467788999999999999999999999999999888751       78888888865322       3677


Q ss_pred             EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC---CCCccccccCCCCCceeEEEccccccccCCC
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR---SGRGLTEHCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~---~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +++..++|++|.+.+   +++|+++|++||+++|+||+|+.+.++.   .+.++....+..+  ..++++|+||++|..|
T Consensus       187 i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~S~SK~~g~~G  264 (409)
T 4eu1_A          187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP--NLIVAQSFSKNFGLYG  264 (409)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS--CCEEEEECTTTSSCGG
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC--cEEEEecCcccccCcc
Confidence            777778899999998   5669999999999999999998765542   1122222223322  2578899999999777


Q ss_pred             ---cee---eccHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhhc
Q 011567          323 ---GFC---TGSAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       323 ---G~i---~~~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                         ||+   +++++    +++.++.......+  +.++..+.++.++++.       .+...+.+++++++.+++.+.|+
T Consensus       265 ~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  342 (409)
T 4eu1_A          265 HRCGALHISTASAEEAKRLVSQLALLIRPMYN--NPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELK  342 (409)
T ss_dssp             GCCEEEEEECSSHHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCHHHHHHHHHHHHHHHhhhcC--CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               994   67777    55555432212222  2356666666666652       22234578889999999999998


Q ss_pred             cCCC----ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          386 DIHG----LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       386 ~~~~----~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                      ++ |    +.+..+..+.+.++.+.         .    +++..+++++||.+.+             +.||+++. +|+
T Consensus       343 ~~-g~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~ll~~~gv~v~p-------------~~Ri~~~~-~~~  394 (409)
T 4eu1_A          343 AC-GSVHDWSHIERQVGMMAYTGLT---------R----EQVELLRSEYHIYMTL-------------NGRAAVSG-LNS  394 (409)
T ss_dssp             HT-TCCSCCHHHHHSCSSEEECCCC---------H----HHHHHHHHHHCEECCT-------------TCEEEGGG-CCT
T ss_pred             hc-CCCCCcceecCCceEEEEeCCC---------H----HHHHHHHHcCCEEEcC-------------CCEEEEEe-cCH
Confidence            86 4    55544434444443221         1    3355667667998864             26898864 677


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRIS  475 (483)
Q Consensus       462 edi~~~~~~l~~~~  475 (483)
                      +|+++++++|++++
T Consensus       395 ~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          395 TNVEYVSQAIHNVT  408 (409)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHh
Confidence            88999999998875

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.94  E-value=9.3e-25  Score=225.06  Aligned_cols=343  Identities=15%  Similarity=0.126  Sum_probs=226.0

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhh
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA  185 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~a  185 (483)
                      .|+.|+||.++ +..+.  .+.+.+++.    . +.      ..|+..+...+|+++|+++++.++++++++|++|+..+
T Consensus        40 ~~~~ylD~~~~~~~~~~--~~~~~~a~~----~-~~------~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~a  106 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAM--SDKQWAGMM----M-GD------EAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLL  106 (456)
T ss_dssp             GGGCSEECSCSSSCCCC--CHHHHHHHT----T-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHH
T ss_pred             cccceeeeccccCCccC--CHHHHHHhh----c-ch------hhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence            56789999876 33333  345544443    2 11      13445567889999999999999999999999999999


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------------C-CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------------N-DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------------~-d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++++.++|| |+.+..+|.++...+...|.+++.++.              + |+++|++.+++...      ..+++|+
T Consensus       107 l~~l~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~------~~~~~v~  179 (456)
T 2ez2_A          107 SQLAIKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA------ENIAYIC  179 (456)
T ss_dssp             HHHHCCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG------GGEEEEE
T ss_pred             HHHhCCCCC-EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc------cceeEEE
Confidence            999999999 655555558888888889988877642              2 78889888865321      1257888


Q ss_pred             EecccC-CCCCccC---hHHHHHHHHHcCcEEEEeCcccccc--------ccCCCCcccc---ccCCCCCceeEEEcccc
Q 011567          251 VEAVYQ-NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGV--------LGRSGRGLTE---HCGVPVDKIDIVTAAMG  315 (483)
Q Consensus       251 ~e~v~~-~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~--------lg~~G~g~~~---~~~v~~~~~Di~~~s~~  315 (483)
                      +++..+ ++|.+.|   +++|+++|++||+++|+||+|++|.        ++..|..+.+   ..+..+   |+++.|++
T Consensus       180 l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~~~~S~k  256 (456)
T 2ez2_A          180 LAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYA---DGCTMSGK  256 (456)
T ss_dssp             EESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC---SEEEEETT
T ss_pred             EeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccC---CEEEEeCc
Confidence            886665 8898887   9999999999999999999998751        2233332211   122222   67777888


Q ss_pred             ccccCC-Cceeec-cHHHHHHHHhcC---CceeecCCCcHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC
Q 011567          316 HALATE-GGFCTG-SARVVDHQRLSS---SGYVFSASLPPYLASA-AITAIDVLEENPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       316 K~lg~~-GG~i~~-~~~~~~~~~~~~---~~~~fs~~~~p~~~aa-a~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      |..+.. ||++++ ++++++.++...   .++....+.++..+++ +.+.++.+.  ++..++.+++.+++++.|++. |
T Consensus       257 k~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g  333 (456)
T 2ez2_A          257 KDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAA-G  333 (456)
T ss_dssp             TTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ccCCCCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcC-C
Confidence            877633 799988 678877654321   1111111223333333 444444332  356777888889999999885 7


Q ss_pred             ceeecCCCCCEEEEEecC--CCCCchhhHHH-HHHHHHHHHHhCCEEEEee-ccc-cc----cc--CCCCCceEEEccCC
Q 011567          390 LSIASNPESPIVFLILEK--STGSMKNDLQL-LEDIADWALKEDGVFVVTS-KRS-ML----DK--CRLPVGIRLFVSAA  458 (483)
Q Consensus       390 ~~i~~~~~~~i~~l~l~~--~~~~~~~~~~~-~~~i~~~~l~~~Gv~v~~~-~~~-~~----~~--~~~~~~lRi~~~~~  458 (483)
                      +++..+..+.++++.+..  +...   .... ...++..+++++||.+.+. .+. ..    ..  ......|||+++..
T Consensus       334 ~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~  410 (456)
T 2ez2_A          334 VPIVEPVGGHAVFLDARRFCEHLT---QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRR  410 (456)
T ss_dssp             CCBCSSCCSSEEEEEHHHHTTTSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred             CccccCCCceEEEEEhHHhcCCCC---hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCC
Confidence            777655567788887631  1100   1111 3445666545669986542 211 00    00  00124599999887


Q ss_pred             -CCHHHHHHHHHHHHHHHHHH
Q 011567          459 -HSEADLVKACESLKRISAVV  478 (483)
Q Consensus       459 -~t~edi~~~~~~l~~~~~~~  478 (483)
                       +|++|+++++++|++++++.
T Consensus       411 ~~t~e~i~~~~~~l~~~l~~~  431 (456)
T 2ez2_A          411 VYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCCHHHHHHHHHHHHHHHhhh
Confidence             89999999999999998763

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.94  E-value=1.1e-24  Score=221.17  Aligned_cols=290  Identities=14%  Similarity=0.136  Sum_probs=212.9

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...++++++++++|.++++++++|++|+..++.++.++||.|++..+.|.++..    .+...|.+++.++.+|+++|
T Consensus        61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  140 (404)
T 1e5e_A           61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV  140 (404)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence            35678999999999999999999999999999999999999999999999988777    67788999999998899888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      ++.+++          ++++|+++++++++|.+.|+++|+++|++ ||+++|+||+|+.+.+.   ..+ + +     ++
T Consensus       141 ~~~i~~----------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~---~~~-~-~-----~~  200 (404)
T 1e5e_A          141 KKHMKP----------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-D-F-----GV  200 (404)
T ss_dssp             HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-G-G-----TC
T ss_pred             HHhcCC----------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC---Ccc-c-c-----CC
Confidence            877643          27899999999999999999999999999 99999999999976543   111 1 2     34


Q ss_pred             eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      |+++.|++|+++..    |||+++++++++ .++.....+ |+.+.+|+.+.++.++++.+   +...++..++.+.+.+
T Consensus       201 di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~  276 (404)
T 1e5e_A          201 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI-TGSVISPHDAWLITRGLSTL---NIRMKAESENAMKVAE  276 (404)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHH
Confidence            89999999999744    589999998887 666543332 24456888888777777643   2355566667666666


Q ss_pred             hhccCC--------------Cceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc-----
Q 011567          383 GLSDIH--------------GLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS-----  440 (483)
Q Consensus       383 ~L~~~~--------------~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~-----  440 (483)
                      .|++.+              ++.+..   ...++++.+.++.       ..    +.+.+++++.||++....+.     
T Consensus       277 ~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------~~----~~~~~~l~~~~i~~~~~s~G~~~sl  345 (404)
T 1e5e_A          277 YLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------GF----EGAKKLLDNLKLITLAVSLGGCESL  345 (404)
T ss_dssp             HHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------HH----HHHHHHHHTCSSSEESSCCCSSSCE
T ss_pred             HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------CH----HHHHHHHHhCCCceeccCCCCccee
Confidence            665442              222221   1237788887742       11    12334566778854432111     


Q ss_pred             ----ccc-c----------CCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          441 ----MLD-K----------CRL-PVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       441 ----~~~-~----------~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                          ... +          ... +..||+++..    ||++++++.|+++++.++..
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~~  398 (404)
T 1e5e_A          346 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALLRS  398 (404)
T ss_dssp             EECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHCC
T ss_pred             eecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHHh
Confidence                000 0          011 2449999976    89999999999999887753

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.94  E-value=1.1e-26  Score=234.65  Aligned_cols=324  Identities=10%  Similarity=0.059  Sum_probs=221.0

Q ss_pred             CeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC----CCEEE--ec
Q 011567          108 GKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----PDSIL--YS  176 (483)
Q Consensus       108 G~~~id~~s~~~lG~----~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~----e~~i~--~~  176 (483)
                      |++++||+++.|++.    ..+|.+.+++.+++++....      .|+......++++.+++++ +.    ++.++  ++
T Consensus        25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~   98 (394)
T 2ay1_A           25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTK------TYAGLSGEPEFQKAMGELILGDGLKSETTATLATV   98 (394)
T ss_dssp             CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCC------CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEE
T ss_pred             CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccC------CCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecC
Confidence            456899999976433    24789999999888752111      1222233567888888886 43    45666  78


Q ss_pred             ccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccE
Q 011567          177 YGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       177 sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      +|++|+..+++++..  +||.|++..+.|.++...+...|.+++.++.   +    |+++|++.+++...       .++
T Consensus        99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~  171 (394)
T 2ay1_A           99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-------GDM  171 (394)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT-------TCE
T ss_pred             CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC-------CCE
Confidence            889999999887764  8898888888888888888888988888876   3    78888888865311       257


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-cccc-CCCCCceeEEEccccccccCCC
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHC-GVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~-~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +++++.+++++|.+.|   +++|+++|++||+++|+||+|+.+..+..+.+. ...+ ...+  .+++++|+||++|..|
T Consensus       172 ~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~~~~~G  249 (394)
T 2ay1_A          172 VLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIP--EVLIAASCSKNFGIYR  249 (394)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCS--SEEEEEECTTTTTCGG
T ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCC--CEEEEEeccCCCcCcC
Confidence            7888899999999987   678999999999999999999875443100111 1111 1111  2577899999998667


Q ss_pred             ---ceeec---cHHHHHHHHhc---CCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhcc
Q 011567          323 ---GFCTG---SARVVDHQRLS---SSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       323 ---G~i~~---~~~~~~~~~~~---~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                         ||+++   ++++++.+...   .....++. .+++.++++.++++..       +..+++.++++++.+++.+.|++
T Consensus       250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (394)
T 2ay1_A          250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSF-PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD  328 (394)
T ss_dssp             GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS-CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               88876   66554432211   00112222 3566667777777643       12245778888889999988877


Q ss_pred             CC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          387 IH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       387 ~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      +.   ++.+..+..+.++++.+.        .    ..+ ..+++++||.+.+             ++|++++ .+|++|
T Consensus       329 ~~~~~~~~~~~~~~g~~~~~~~~--------~----~~~-~~~l~~~gi~v~~-------------~~Ris~~-~~~~~~  381 (394)
T 2ay1_A          329 LSGSDRFGFVAEHRGMFSRLGAT--------P----EQV-KRIKEEFGIYMVG-------------DSRINIA-GLNDNT  381 (394)
T ss_dssp             HHTSSTTTHHHHCCSSEEECCCC--------H----HHH-HHHHHHHCEECCT-------------TCEEEGG-GCCTTT
T ss_pred             cCCCCCeeEEcCCceEEEeeCCC--------H----HHH-HHHHHhCCEEecC-------------CCeEEee-cCCHhh
Confidence            52   355544434666655441        1    123 3455566998863             3799988 479999


Q ss_pred             HHHHHHHHHHH
Q 011567          464 LVKACESLKRI  474 (483)
Q Consensus       464 i~~~~~~l~~~  474 (483)
                      +++++++|+++
T Consensus       382 i~~~~~~l~~~  392 (394)
T 2ay1_A          382 IPILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.94  E-value=2.5e-26  Score=232.17  Aligned_cols=325  Identities=15%  Similarity=0.107  Sum_probs=218.4

Q ss_pred             CCeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh---C-----CCCEEE
Q 011567          107 SGKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---G-----TPDSIL  174 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~----~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~---g-----~e~~i~  174 (483)
                      .|+++|||+++.|++.    ..+|.+.+++.+++++....      .|+......++++.+++++   +     .++.++
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~   97 (396)
T 2q7w_A           24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTK------NYLGIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCCCceecccccccCCCCCccCcHHHHHHHHhhcCccccc------CCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence            3578999999976543    24689999999888763221      2333333567888888887   2     345665


Q ss_pred             --ecccHHHHHhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhcc
Q 011567          175 --YSYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       175 --~~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~  243 (483)
                        +++|++|+..+++++.  .+||.|+++.+.|..+...++..|.+++.++.   +    |+++|++.+++...      
T Consensus        98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~------  171 (396)
T 2q7w_A           98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA------  171 (396)
T ss_dssp             EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT------
T ss_pred             EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCC------
Confidence              7888899999987764  58999999999998888888888999888876   4    78888887754221      


Q ss_pred             CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEcccccccc
Q 011567          244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                       .++++++..+++++|.+.|   +++|+++|++||+++|+||+|+.+..+....+. ...+... .+.+++++|+||++|
T Consensus       172 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~  249 (396)
T 2q7w_A          172 -GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-HKELIVASSYSXNFG  249 (396)
T ss_dssp             -TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH-CSCEEEEEECTTTTT
T ss_pred             -CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc-CCcEEEEEecccccc
Confidence             2677888888899999887   678999999999999999999875443100111 1112111 123688999999998


Q ss_pred             CCC---ceeec---cH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHH
Q 011567          320 TEG---GFCTG---SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRT  382 (483)
Q Consensus       320 ~~G---G~i~~---~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~  382 (483)
                      ..|   ||+++   ++    ++++.+.... ...++ ..+++.++++.++++..       +..++..++++++.+++.+
T Consensus       250 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  327 (396)
T 2q7w_A          250 LYNERVGACTLVAADSETVDRAFSQMKAAI-RANYS-NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVN  327 (396)
T ss_dssp             CGGGCCEEEEEECSSHHHHHHHHHHHHHHH-HTTTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHH
T ss_pred             ccccccceEEEEcCCHHHHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666   88875   55    3444443211 11222 23677777777776532       1223456778888899999


Q ss_pred             hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          383 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       383 ~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .|+++.   ++.+..+..+.++++.+.        .     +.+..+++++||.+.+             ++||+++. .
T Consensus       328 ~L~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gv~v~~-------------~~Ris~~~-~  380 (396)
T 2q7w_A          328 TLQEKGANRDFSFIIKQNGMFSFSGLT--------K-----EQVLRLREEFGVYAVA-------------SGRVNVAG-M  380 (396)
T ss_dssp             HHHHTTCCSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHHHCEECCT-------------TCEEEGGG-C
T ss_pred             HHHhcCCCCCcceecCCCceEEEecCC--------H-----HHHHHHHHhcCeeecC-------------CceEEEee-c
Confidence            998763   255544334555444331        1     1233456566998863             37999985 4


Q ss_pred             CHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRI  474 (483)
Q Consensus       460 t~edi~~~~~~l~~~  474 (483)
                      |++++++++++|+++
T Consensus       381 ~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          381 TPDNMAPLCEAIVAV  395 (396)
T ss_dssp             CTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999999875

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.94  E-value=7.5e-25  Score=224.03  Aligned_cols=288  Identities=13%  Similarity=0.085  Sum_probs=213.0

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++..    .+...|.++..++.+|+++|
T Consensus       113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l  192 (445)
T 1qgn_A          113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGAL  192 (445)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence            46788999999999999999999999999999999999999999988888887665    35567889999999999999


Q ss_pred             HHHHHHhhhhhhhccCcc-EEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          229 RNTLERVTADNKRAKKLR-RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~-~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      ++.+++          ++ ++|++|+++|++|.+.|+++|.++|++||+++|+||+|+.+....       ...   ..+
T Consensus       193 ~~ai~~----------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~-------~~~---~g~  252 (445)
T 1qgn_A          193 ELALNQ----------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK-------ALA---LGA  252 (445)
T ss_dssp             HHHHHH----------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-------TTT---TTC
T ss_pred             HHHhcc----------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-------ccc---cCC
Confidence            988864          25 899999999999999999999999999999999999998654321       122   235


Q ss_pred             eEEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          308 DIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       308 Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |+++.|++|.+|+.    +|++++++++++.++...  ..+++.++|..+..+..+++.+.   ..+++..++.+++.+.
T Consensus       253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l~---~r~~~~~~~a~~l~~~  327 (445)
T 1qgn_A          253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAEI  327 (445)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHGGGHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEEECCcccccccccceEEEEEECHHHHHHHHHHH--HHhCCCCCHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence            89999999999854    789999998888765432  23445567877776666665442   3566777788889999


Q ss_pred             hccCCCc-eeecC----------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567          384 LSDIHGL-SIASN----------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML----  442 (483)
Q Consensus       384 L~~~~~~-~i~~~----------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~----  442 (483)
                      |++.+++ .+..+                ..++++.+.++..       .....++.+. ++..++.++.+...++    
T Consensus       328 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~~~~~l~~-l~~~~i~~s~G~~~sl~~~p  399 (445)
T 1qgn_A          328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLTTAKFVDA-LKIPYIAPSFGGCESIVDQP  399 (445)
T ss_dssp             HHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCSSSCEEECH
T ss_pred             HhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHHHHHHHHh-CCCceEeccCCCCceeeecc
Confidence            9887766 33322                2577899998531       1123344543 3322454443332211    


Q ss_pred             -------------ccCCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          443 -------------DKCRL-PVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       443 -------------~~~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                                   ..... +..||+++.    .||++.+++.|++++..
T Consensus       400 ~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          400 AIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             HHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence                         00111 245999986    47899999999998764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.94  E-value=8.9e-25  Score=220.35  Aligned_cols=285  Identities=13%  Similarity=0.126  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+++++|++++|.++.+++++|++|+..+++++.++||.|++..+.|.++...+    +..|.++..++.+|+++|+
T Consensus        52 ~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~  131 (386)
T 1cs1_A           52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALR  131 (386)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence            567899999999999989999999999999999999999999998888888765543    5668889999999999999


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+....   .    ..   .++|+
T Consensus       132 ~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~----~~---~~~di  191 (386)
T 1cs1_A          132 AALAE----------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---P----LA---LGADL  191 (386)
T ss_dssp             HHHHT----------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G----GG---GTCSE
T ss_pred             Hhhcc----------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c----cc---cCceE
Confidence            88863          26788899999999999999999999999999999999998765431   1    11   23489


Q ss_pred             EEccccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|++|+++..    ||++++++ ++++.++....+  ++.+.+|..++++.++++.+   ++..+++.++.+.+.+.|
T Consensus       192 ~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l  266 (386)
T 1cs1_A          192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN--IGVTGGAFDSYLLLRGLRTL---VPRMELAQRNAQAIVKYL  266 (386)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--HTCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH
Confidence            999999999743    38888875 787777644322  23446788777776666544   345677778888888888


Q ss_pred             ccCCCceee--c---------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc--------
Q 011567          385 SDIHGLSIA--S---------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR--------  439 (483)
Q Consensus       385 ~~~~~~~i~--~---------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~--------  439 (483)
                      ++++.+.-.  .               ...++++.+.+++.          ..++.. .|++.||+++...+        
T Consensus       267 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~l~~~gi~~~~~~~g~~~sl~~  335 (386)
T 1cs1_A          267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRR-FLGGLSLFTLAESLGGVESLIS  335 (386)
T ss_dssp             TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHH-HHHTCSSSEEBSCCCSSSCEEE
T ss_pred             hcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHH-HHHhCCcceEcccCCCcceeee
Confidence            775433211  0               12478888887421          113344 45667998864211        


Q ss_pred             -ccc-ccC-----------CCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          440 -SML-DKC-----------RLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       440 -~~~-~~~-----------~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                       +.. .++           ..+..||++++...++++++.+.++|+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          336 HAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             EGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence             100 000           11245999999988888888888877764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.94  E-value=4.9e-25  Score=229.77  Aligned_cols=346  Identities=12%  Similarity=0.103  Sum_probs=221.8

Q ss_pred             EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHH----HHHHHHHHhhhCC---CCEEEecccHHHHHh
Q 011567          112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVH----LDCEARIAKFLGT---PDSILYSYGLSTMFS  184 (483)
Q Consensus       112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~----~~l~~~La~~~g~---e~~i~~~sG~~a~~~  184 (483)
                      +++.+..||++...+....++.+.+..+..+.  ....++..+..    .++.++|++++|.   +..+++++|++|+..
T Consensus        96 ~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~  173 (497)
T 2qma_A           96 IFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQM  173 (497)
T ss_dssp             CCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHH
T ss_pred             CCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHH
Confidence            45556677777655555555444443332222  12234443444    4445559999986   346677899999998


Q ss_pred             hhhhh----c---------cC------Cc-EEEEcCCchhHHHhHhhhcCC---eEEEecCC-----CHHHHHHHHHHhh
Q 011567          185 AIPCF----C---------KK------GD-LIVADEGVHWGIQNGLYLSRS---TVVYFKHN-----DMDSLRNTLERVT  236 (483)
Q Consensus       185 ai~~~----~---------~~------gd-iI~~~~~~h~s~~~g~~~s~~---~v~~~~~~-----d~~~Le~~l~~~~  236 (483)
                      ++.+.    .         ++      ++ .|+++...|.++.+++...+.   +++.++.+     |+++|++.+++..
T Consensus       174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~  253 (497)
T 2qma_A          174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAK  253 (497)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHH
Confidence            87763    2         12      46 899999999999999988765   78888876     8999999987642


Q ss_pred             hhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccc
Q 011567          237 ADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH  316 (483)
Q Consensus       237 ~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K  316 (483)
                      ..    ...+.+|++....+++|.+.|+++|+++|++||+++|+|++|+++.+....+.  ...++  ..+|+++.|++|
T Consensus       254 ~~----~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi--~~~D~i~~s~hK  325 (497)
T 2qma_A          254 AE----GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGV--ERAHSISVDFHK  325 (497)
T ss_dssp             HT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTG--GGCSEEEEETTT
T ss_pred             HC----CCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCc--ccCCEEEEcchh
Confidence            21    01133667777777889999999999999999999999999998765322111  12344  345899999999


Q ss_pred             cccCCC--ceee-ccHHHHHHHHhcCCceeecCC---CcHHH----------HHHHHHHHHHHhc--CcHHHHHHHHHHH
Q 011567          317 ALATEG--GFCT-GSARVVDHQRLSSSGYVFSAS---LPPYL----------ASAAITAIDVLEE--NPDLITKLKKNTA  378 (483)
Q Consensus       317 ~lg~~G--G~i~-~~~~~~~~~~~~~~~~~fs~~---~~p~~----------~aaa~~al~~l~~--~~~~~~~l~~~~~  378 (483)
                      +++.+.  |+++ .++..++.+.. ...|.++..   .++..          +.+..++++.+..  ..+++++..++++
T Consensus       326 ~l~~p~~~G~l~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~  404 (497)
T 2qma_A          326 LFYQTISCGALLVNDKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTL  404 (497)
T ss_dssp             TTCCCSSCEEEEESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceEEEEEeCHHHHHHhcC-CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            987432  5554 44554444332 223332221   11111          1122234554421  2357888899999


Q ss_pred             HHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cC
Q 011567          379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SA  457 (483)
Q Consensus       379 ~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~  457 (483)
                      ++.+.|++++++++..++..+++.+++.+...   .......++.+.+.++ |+.+.+.....     ....+|+++ +.
T Consensus       405 ~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~-G~~~~~~~~~~-----g~~~lRis~~~~  475 (497)
T 2qma_A          405 EVADMIRTNDQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALTR-GIAVLGETIVD-----GKTALKFTILNP  475 (497)
T ss_dssp             HHHHHHHTCTTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHH-TSCBCEEEEET-----TEEEEEEECCCT
T ss_pred             HHHHHHhhCCCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhC-CCEEEEeeEEC-----CEEEEEEEecCC
Confidence            99999999889988766678899998854321   1122344666666655 77764321110     013499998 88


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+|++|++++++.|++++++
T Consensus       476 ~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          476 CLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999998765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.94  E-value=8.4e-26  Score=229.65  Aligned_cols=327  Identities=9%  Similarity=0.047  Sum_probs=224.5

Q ss_pred             CCeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC-------CCEEE
Q 011567          107 SGKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT-------PDSIL  174 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~----~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~-------e~~i~  174 (483)
                      +|+.++||+++.++...    ..|.+.+++.+++++.+..     ..|+......++++.+++++ +.       ++.++
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~  102 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-----HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGG  102 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-----cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEE
Confidence            35678999999765432    3478888888877331110     01222233467888888887 42       56777


Q ss_pred             --ecccHHHHHhhhh--hhccCC-----cEEEEcCCchhHHHhHhhhcCCe-EEEecC---C----CHHHHHHHHHHhhh
Q 011567          175 --YSYGLSTMFSAIP--CFCKKG-----DLIVADEGVHWGIQNGLYLSRST-VVYFKH---N----DMDSLRNTLERVTA  237 (483)
Q Consensus       175 --~~sG~~a~~~ai~--~~~~~g-----diI~~~~~~h~s~~~g~~~s~~~-v~~~~~---~----d~~~Le~~l~~~~~  237 (483)
                        +++|++|+..+++  .+.++|     |.|++..+.|.++...+...|.+ ++.++.   +    |+++|++.+++...
T Consensus       103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  182 (412)
T 1ajs_A          103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE  182 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred             EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCC
Confidence              8888999998864  445688     88888888888888888888988 887776   3    68888888765322


Q ss_pred             hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC---Ccc-ccccCCCCCceeEE
Q 011567          238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG---RGL-TEHCGVPVDKIDIV  310 (483)
Q Consensus       238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G---~g~-~~~~~v~~~~~Di~  310 (483)
                             ++++|++..+++++|.+.|   +++|+++|++||+++|+||+|+....+  |   ... ...+... .+.+++
T Consensus       183 -------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~-~~~~i~  252 (412)
T 1ajs_A          183 -------FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG--NLEKDAWAIRYFVSE-GFELFC  252 (412)
T ss_dssp             -------TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS--CHHHHTHHHHHHHHT-TCCEEE
T ss_pred             -------CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC--cccccchHHHHHhcc-CCcEEE
Confidence                   2577777888889999877   678999999999999999998754332  2   111 1212111 122588


Q ss_pred             EccccccccCCC---ceeec---cHHH----HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-------cCcHHHHHH
Q 011567          311 TAAMGHALATEG---GFCTG---SARV----VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKL  373 (483)
Q Consensus       311 ~~s~~K~lg~~G---G~i~~---~~~~----~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-------~~~~~~~~l  373 (483)
                      +.|+||++|+.|   ||+++   ++++    ++.++.. ....++. .+++.++++.++|+...       ..+++++++
T Consensus       253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  330 (412)
T 1ajs_A          253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSN-PPAQGARIVARTLSDPELFHEWTGNVKTMADRI  330 (412)
T ss_dssp             EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSS-CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCC-CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence            899999999766   89888   7774    3433321 1122222 36666777777776432       224578888


Q ss_pred             HHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCc
Q 011567          374 KKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG  450 (483)
Q Consensus       374 ~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~  450 (483)
                      +++.+++.+.|+++.   ++.+..+..+.+.++.+.             .+.+..+++++||++.+             +
T Consensus       331 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gv~v~~-------------~  384 (412)
T 1ajs_A          331 LSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-------------PKQVEYLINQKHIYLLP-------------S  384 (412)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-------------HHHHHHHHHTTCEECCT-------------T
T ss_pred             HHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-------------HHHHHHHHHhCCEEecC-------------C
Confidence            999999999998863   366554434555554331             12345566677999863             2


Q ss_pred             eEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          451 IRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       451 lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +|++++. +|++++++++++|++++++
T Consensus       385 ~Ris~~~-~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          385 GRINMCG-LTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             cEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence            7999884 5999999999999998865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=3.2e-25  Score=222.45  Aligned_cols=307  Identities=13%  Similarity=0.183  Sum_probs=216.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      |++.+++.+.+...         .|+..+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++...|.
T Consensus        17 ~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~   87 (373)
T 3frk_A           17 YEIKFKFEEIYKRN---------WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFI   87 (373)
T ss_dssp             HHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCT
T ss_pred             HHHHHHHHHHHHCC---------CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence            55666666666552         23455788999999999999999999999999999999999 899999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++..++...|.+++.++.+      |+++|++.+++          ++++|+   +.+++|.+.|+++|.++|++||+++
T Consensus        88 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~l  154 (373)
T 3frk_A           88 ATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE----------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKL  154 (373)
T ss_dssp             HHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT----------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC----------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEE
Confidence            9999999999999888765      77888776643          256666   3457899999999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccccC--CCceeecc-HHHHHHHHh---cCCc-------ee
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRL---SSSG-------YV  343 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~--~GG~i~~~-~~~~~~~~~---~~~~-------~~  343 (483)
                      |+||+|+.|.. ..++    ..+..   .|+++.|++  |++++  .||+++++ +++.+.++.   .+..       ..
T Consensus       155 i~D~a~~~g~~-~~~~----~~~~~---~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g  226 (373)
T 3frk_A          155 IEDAAQAHGSL-YKGM----KVGSL---GDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKG  226 (373)
T ss_dssp             EEECTTCTTCE-ETTE----ETTSS---SSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCC
T ss_pred             EEECCcccCCE-ECCE----ecccc---ccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCcccccc
Confidence            99999997654 2122    22322   278888876  99975  46887765 456555432   1111       11


Q ss_pred             ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC---C--CEEEEEecCCCCCchhhHHH
Q 011567          344 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE---S--PIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       344 fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~--~i~~l~l~~~~~~~~~~~~~  418 (483)
                      +...++++.++.+...++.+   ++..++.+++.+++++.|.+++ +.+...+.   .  ..+.+...        +   
T Consensus       227 ~~~~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~---  291 (373)
T 3frk_A          227 FNSRLDELQAGFLRVKLKYL---DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE--------K---  291 (373)
T ss_dssp             CBCCCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES--------S---
T ss_pred             ccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC--------C---
Confidence            23346788887776666544   3477888899999999998874 55432211   1  22333331        1   


Q ss_pred             HHHHHHHHHHhCCEEEEeeccccccc-----------CCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDK-----------CRLP-------VGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~-----------~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..++.+. |.++||.+++........           ...|       ..||++++..+|++||++++++|+++..+.
T Consensus       292 ~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~  368 (373)
T 3frk_A          292 RDELQKY-LNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH  368 (373)
T ss_dssp             HHHHHHH-HHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHH-HHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            2345665 455699988654111100           0011       249999999999999999999999876543

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.94  E-value=1.4e-24  Score=217.39  Aligned_cols=315  Identities=13%  Similarity=0.120  Sum_probs=219.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh---ccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF---CKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~  200 (483)
                      .+|++.+++.+++++. .        ++..+...++++.|++++|.++++++++|++|+..+++++   .++||.|+++.
T Consensus        11 ~~~~v~~a~~~~~~~~-~--------~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~   81 (375)
T 2fnu_A           11 LDKEDKKAVLEVLNSK-Q--------LTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP   81 (375)
T ss_dssp             CCHHHHHHHHHHHTSS-C--------CSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred             CCHHHHHHHHHHHHcC-c--------ccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECC
Confidence            5789999999998752 1        1123567899999999999988888899999999999999   88999999999


Q ss_pred             CchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC
Q 011567          201 GVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR  275 (483)
Q Consensus       201 ~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~  275 (483)
                      +.|.++...+...|.+++.++.+     |+++|++.+++          .+++|++.+.   +|.+.|+++|.++|++||
T Consensus        82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~---tG~~~~l~~i~~l~~~~~  148 (375)
T 2fnu_A           82 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINE----------RTKAIVSVDY---AGKSVEVESVQKLCKKHS  148 (375)
T ss_dssp             SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT----------TEEEEEEECG---GGCCCCHHHHHHHHHHHT
T ss_pred             CccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc----------CceEEEEeCC---cCCccCHHHHHHHHHHcC
Confidence            99999999999899999888764     66666655532          2455555444   699999999999999999


Q ss_pred             cEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccccCCCceeec-c-HHHHHHHHhcC-Cc---------
Q 011567          276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALATEGGFCTG-S-ARVVDHQRLSS-SG---------  341 (483)
Q Consensus       276 ~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~~GG~i~~-~-~~~~~~~~~~~-~~---------  341 (483)
                      +++|+||+|++|.... +    ...+..+   |+++.|++  |++|+..|+++. + +++++.++... .+         
T Consensus       149 ~~li~D~a~~~~~~~~-~----~~~~~~~---~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (375)
T 2fnu_A          149 LSFLSDSSHALGSEYQ-N----KKVGGFA---LASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG  220 (375)
T ss_dssp             CEEEEECTTCTTCEET-T----EETTSSS---SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred             CEEEEECccccCCeEC-C----eeccccC---CeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCcccccccc
Confidence            9999999999875431 1    1222212   56666777  999862255443 3 66776654321 11         


Q ss_pred             ----eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC----C-CCEEEEEecCCCCCc
Q 011567          342 ----YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP----E-SPIVFLILEKSTGSM  412 (483)
Q Consensus       342 ----~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~-~~i~~l~l~~~~~~~  412 (483)
                          +.+...++++.++++...++.+   ++..++.+++.+++.+.|++++++.+..+.    . ..++++.++...   
T Consensus       221 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  294 (375)
T 2fnu_A          221 EVKSIGHNFRLNEIQSALGLSQLKKA---PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF---  294 (375)
T ss_dssp             EESSCCCBCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG---
T ss_pred             ccccccccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc---
Confidence                1122245777777666554433   357888999999999999998788775431    2 234566664210   


Q ss_pred             hhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                       .  ....++.+.+ .++||.+.....+...         ....|       ..||++++..+|++|+++++++|+++++
T Consensus       295 -~--~~~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~  370 (375)
T 2fnu_A          295 -F--TCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  370 (375)
T ss_dssp             -G--GGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -c--chHHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence             0  0134566654 4569998832211100         00011       3499999999999999999999999887


Q ss_pred             HH
Q 011567          477 VV  478 (483)
Q Consensus       477 ~~  478 (483)
                      ++
T Consensus       371 ~~  372 (375)
T 2fnu_A          371 SF  372 (375)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.94  E-value=1.6e-24  Score=220.79  Aligned_cols=323  Identities=14%  Similarity=0.181  Sum_probs=224.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH  203 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h  203 (483)
                      +|++.+++.+++++...+..+  ...|..+...++++.+++++|.++.+++++|++|+..+++++ .++||.|+++.+.|
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~--~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~   92 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISG--YWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTW   92 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTS--BCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred             CHHHHHHHHHHHhcCCccccC--cccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence            589999999999875333222  235666788999999999999998899999999999999999 89999999999999


Q ss_pred             hHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567          204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR  277 (483)
Q Consensus       204 ~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~  277 (483)
                      .++..++...|.+++.++.+      |+++|++.+++          ++++|++++   ++|...++++|.++|++||++
T Consensus        93 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~  159 (418)
T 2c81_A           93 IATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD----------KTKAIIPVH---LFGSMANMDEINEIAQEHNLF  159 (418)
T ss_dssp             THHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT----------TEEEECCBC---CTTCCCCHHHHHHHHHHTTCE
T ss_pred             HhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC----------CCeEEEEeC---CcCCcccHHHHHHHHHHCCCE
Confidence            99999999999999888764      56666655432          256666543   579999999999999999999


Q ss_pred             EEEeCcccccc-ccCCCCccccccCCCCCceeEEEccc--cccccC-CCceeec-cHHHHHHHHhc-CCc----------
Q 011567          278 VFLDESNSFGV-LGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT-EGGFCTG-SARVVDHQRLS-SSG----------  341 (483)
Q Consensus       278 li~DEa~s~g~-lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~-~GG~i~~-~~~~~~~~~~~-~~~----------  341 (483)
                      +|+||+|+.|. +.  ++.    .+.-.   |+.+.|+  +|++|+ .||++++ ++++++.++.. ..+          
T Consensus       160 li~D~a~~~~~~~~--~~~----~~~~~---~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  230 (418)
T 2c81_A          160 VIEDCAQSHGSVWN--NQR----AGTIG---DIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL  230 (418)
T ss_dssp             EEEECTTCTTCEET--TEE----TTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred             EEEECcccccCccC--CEe----ccccc---ceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence            99999999875 32  221    12111   4555566  999975 5688888 46776665421 111          


Q ss_pred             ---ee----------ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCC------CEEE
Q 011567          342 ---YV----------FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPES------PIVF  402 (483)
Q Consensus       342 ---~~----------fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~------~i~~  402 (483)
                         |.          +...++++.++.....++.+   ++..++.+++.+++.+.|.+++++.+...+.+      .++.
T Consensus       231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~  307 (418)
T 2c81_A          231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL---DDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYV  307 (418)
T ss_dssp             CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEE
T ss_pred             ccchhhccccccccCcCCCcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEE
Confidence               11          11124566555444444333   45778888899999999998888887633222      3555


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEE---EEeeccccccc------------------------CCCC-------
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVF---VVTSKRSMLDK------------------------CRLP-------  448 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~---v~~~~~~~~~~------------------------~~~~-------  448 (483)
                      +.+++....    .....++.+.+.++.||.   +.+...+....                        ...|       
T Consensus       308 ~~~~~~~~~----~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (418)
T 2c81_A          308 FRFDPVKFG----GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASG  383 (418)
T ss_dssp             EEECGGGTT----TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHH
T ss_pred             EEEcccccc----ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHh
Confidence            666420000    001235666544433899   87654321100                        0111       


Q ss_pred             CceEEEccCCC-CHHHHHHHHHHHHHHHHHH
Q 011567          449 VGIRLFVSAAH-SEADLVKACESLKRISAVV  478 (483)
Q Consensus       449 ~~lRi~~~~~~-t~edi~~~~~~l~~~~~~~  478 (483)
                      ..||++++..+ |++|+++++++|+++++++
T Consensus       384 ~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          384 QSIVIHHAILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             HEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence            25999999999 9999999999999988653

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=4.9e-25  Score=220.89  Aligned_cols=305  Identities=14%  Similarity=0.180  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchhHH
Q 011567          128 LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGI  206 (483)
Q Consensus       128 i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~s~  206 (483)
                      +.+++.+.+...         .|+..+...++++.++++++.++++++++|++|+..+++++ .++||.|+++.+.|.++
T Consensus        21 ~~~~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~   91 (374)
T 3uwc_A           21 YLNDLREFIKTA---------DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIAS   91 (374)
T ss_dssp             HHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH
T ss_pred             HHHHHHHHHHcC---------CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH
Confidence            777777777653         23455778999999999999999999999999999999999 89999999999999999


Q ss_pred             HhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe
Q 011567          207 QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       207 ~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D  281 (483)
                      ...+...|.+++.++.+     |+++|++.+++          ++++|+   +.+++|.+.|+++|.++|++||+++|+|
T Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D  158 (374)
T 3uwc_A           92 VGAIVQAGATPVLVDSENGYVIDPEKIEAAITD----------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVED  158 (374)
T ss_dssp             HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT----------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC----------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence            99999999999998876     77777766533          256666   5567899999999999999999999999


Q ss_pred             CccccccccCCCCccccccCCCCCceeEEEcccc--ccccC--CCceeecc-HHHHHHHHhcCC-c---------eeecC
Q 011567          282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRLSSS-G---------YVFSA  346 (483)
Q Consensus       282 Ea~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~--~GG~i~~~-~~~~~~~~~~~~-~---------~~fs~  346 (483)
                      |+|+.|..-. +    +..+..   .|+++.|++  |++++  .||+++++ +++.+.++.... +         ..+..
T Consensus       159 ~~~~~g~~~~-~----~~~~~~---~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (374)
T 3uwc_A          159 ACQTILGRIN-D----KFVGSW---GQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINC  230 (374)
T ss_dssp             CTTCTTCEET-T----EETTSS---SSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBC
T ss_pred             CCCccCceeC-C----eecccc---ccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCccccccccC
Confidence            9998764311 1    122222   288888976  99985  36777764 456655443211 1         11222


Q ss_pred             CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC-ceeecCCCC-----CEEEEEecCCCCCchhhHHHHH
Q 011567          347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-LSIASNPES-----PIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       347 ~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~-~~i~~~~~~-----~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      .++++.++.+...++.+   ++..++.+++.+++++.|.++++ +.+...+..     ..+.+...        +   ..
T Consensus       231 ~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~  296 (374)
T 3uwc_A          231 RMDTIQAVIANRLMNQL---ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK--------Y---RD  296 (374)
T ss_dssp             BCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET--------T---HH
T ss_pred             CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC--------C---HH
Confidence            35677776665554433   34778888999999999998866 665422211     12333321        1   23


Q ss_pred             HHHHHHHHhCCEEEEeecccccc-----------cCCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLD-----------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~-----------~~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++.+. |.++||.+++.....+.           ....|       ..||++++..+|++||++++++|++++++
T Consensus       297 ~l~~~-L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          297 QLFQY-LKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHHH-HHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH-HHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            56665 44569998876411110           00011       34999999999999999999999998764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.94  E-value=3.1e-25  Score=218.71  Aligned_cols=281  Identities=15%  Similarity=0.136  Sum_probs=203.4

Q ss_pred             HHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHHHHHH
Q 011567          158 DCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLRNTLE  233 (483)
Q Consensus       158 ~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le~~l~  233 (483)
                      ++++++++++|.++.+++++|++|+..+++++.++||.|+++.+.|.++...+    ...|.++..++..|++++++.++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999998877665    34788999999888888887664


Q ss_pred             HhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEc
Q 011567          234 RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTA  312 (483)
Q Consensus       234 ~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~  312 (483)
                      +          ++++|+++++++++|.+.|+++|.++|++ ||+++|+||+|+.|.+..   ..  .     .++|++++
T Consensus        82 ~----------~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~--~-----~~~d~~~~  141 (331)
T 1pff_A           82 P----------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN---PL--D-----LGVDIVVH  141 (331)
T ss_dssp             T----------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG--G-----GTCSEEEE
T ss_pred             C----------CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC---hh--h-----cCCcEEEE
Confidence            2          36889999999999999999999999999 999999999998775431   11  1     23489999


Q ss_pred             cccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc-
Q 011567          313 AMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD-  386 (483)
Q Consensus       313 s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~-  386 (483)
                      |++|+++..    +|++++++ ++++.++....++ ++.+.++..+.++.++++.+.   ...++..++.+.+.+.|++ 
T Consensus       142 s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~  217 (331)
T 1pff_A          142 SATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-TGAIISPHDAWLITRGTLTLD---MRVKRAAENAQKVAEFLHEH  217 (331)
T ss_dssp             ETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred             ECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh-cCCCCCHHHHHHHHcCcchHH---HHHHHHHHHHHHHHHHHHcC
Confidence            999999743    67999998 8888887654431 334567777777666776543   2334444444444444432 


Q ss_pred             -------------CCCceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec---------ccc
Q 011567          387 -------------IHGLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK---------RSM  441 (483)
Q Consensus       387 -------------~~~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~---------~~~  441 (483)
                                   ++++.+..   ...++++.+.+.+           ..++.. .+++.||++....         .+.
T Consensus       218 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~l~~~gI~~~~~s~g~~~sl~~~~~  285 (331)
T 1pff_A          218 KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG-----------LEKAKK-VLDNCHVVSLAVSLGGPESLIQHPA  285 (331)
T ss_dssp             TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-----------HHHHHH-HHHTCSSSEECSSCCSSSCEEECHH
T ss_pred             CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-----------HHHHHH-HHHhCCCceeccCCCCcceeeecch
Confidence                         22333321   1257788888741           113343 5667799876441         111


Q ss_pred             cc-----------c-CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          442 LD-----------K-CRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       442 ~~-----------~-~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ..           . ...+..+|++++..+|+++++++.++|+++
T Consensus       286 ~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          286 SMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             hhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            00           0 011345999999999999999999998764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.94  E-value=3.3e-24  Score=218.12  Aligned_cols=283  Identities=18%  Similarity=0.191  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...++++++++++|.++++++++|++|+..+++++.++||.|++..+.|.++...    +...|.+++.++.+ +++|+
T Consensus        56 ~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~  134 (412)
T 2cb1_A           56 PTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVR  134 (412)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHH
Confidence            67899999999999999899999999999999999999999999999999876665    34568888888764 77777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+...  ...    .+   .++|+
T Consensus       135 ~~i~~----------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~--~~~----~~---~~~di  195 (412)
T 2cb1_A          135 EALSA----------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL--CRP----LA---WGAHV  195 (412)
T ss_dssp             HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS--CCG----GG---GTCSE
T ss_pred             HHhcc----------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc--CCc----cc---cCCeE
Confidence            66632          3788999999999999999999999999999999999999865111  111    11   23499


Q ss_pred             EEccccccccC----CCceeeccH---------------------------HHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567          310 VTAAMGHALAT----EGGFCTGSA---------------------------RVVDHQRLSSSGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~---------------------------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~  358 (483)
                      ++.|++|+++.    .||+++.++                           ++.+.++.... ..++..++|..++.+..
T Consensus       196 ~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~~a~~~~~  274 (412)
T 2cb1_A          196 VVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL-SLCGMALSPFNAYLLFQ  274 (412)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT-TTTCCCCCHHHHHHHHH
T ss_pred             EEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH-HhcCCCCChHHhHHHHc
Confidence            99999999974    345555552                           33444443210 11223567888877777


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cC----------------CCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SN----------------PESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~----------------~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      .++.+.   +..++..++.+++.+.|.+.+++... .+                ..++++.+.+ ..       .+   +
T Consensus       275 ~l~~l~---~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~-------~~---~  340 (412)
T 2cb1_A          275 GLETVA---LRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD-------LE---R  340 (412)
T ss_dssp             HGGGHH---HHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS-------HH---H
T ss_pred             CCchHH---HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC-------HH---H
Confidence            666553   45667778999999999888787633 11                2466888888 31       11   2


Q ss_pred             HHHHHHHhCCEEEEeec---------cccccc-CC-----------CCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSK---------RSMLDK-CR-----------LPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~---------~~~~~~-~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      + ...+++.||.+ ...         .+.... ..           .+..||++++..+|+++|+.+.++|++
T Consensus       341 ~-~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          341 A-SRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             H-HHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             H-HHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            2 33456678888 542         221100 00           134599999999999999999998864

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.94  E-value=2e-24  Score=218.29  Aligned_cols=286  Identities=15%  Similarity=0.095  Sum_probs=209.5

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++...+    ...|.++..++.+|+++|
T Consensus        65 ~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  144 (392)
T 3qhx_A           65 NPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAV  144 (392)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHH
Confidence            3567899999999999999999999999999999999999999999998888766555    567889999999999999


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+....       ..+.   .+|
T Consensus       145 ~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~-------~~~~---~~d  204 (392)
T 3qhx_A          145 RAAIRP----------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ-------PLSL---GAD  204 (392)
T ss_dssp             HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC-------GGGG---TCS
T ss_pred             HHhhCC----------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCC-------hHHh---CCc
Confidence            887753          37899999999999999999999999999999999999998653321       1222   348


Q ss_pred             EEEccccccccCC----Cceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALATE----GGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      +++.|++|.+|+.    ||+++++ +++.+.++.....  ++...+|+.++++...++.+.   ...++..++.+.+.+.
T Consensus       205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~l~~~  279 (392)
T 3qhx_A          205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG--AGAVPGPFDAYLTMRGLKTLV---LRMQRHSENAAAVAEF  279 (392)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHH
Confidence            9999999999854    6888876 5777766543222  334567888887777766543   3567788888889888


Q ss_pred             hccCCCceeec-----------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567          384 LSDIHGLSIAS-----------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML----  442 (483)
Q Consensus       384 L~~~~~~~i~~-----------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~----  442 (483)
                      |++.+.+....                 ...+.++.+.++..       ......+.+. ++..|+.+..+...++    
T Consensus       280 L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~~  351 (392)
T 3qhx_A          280 LAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAAEQLCAK-TNIFILAESLGSVESLIEHP  351 (392)
T ss_dssp             HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHHHHHHHH-CSSSEECSCCCCSSCEEECG
T ss_pred             HhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHHHHHHHh-CCCceECCCCCCCCceeeCc
Confidence            88776543221                 11266889988531       2234455553 4444555543332111    


Q ss_pred             ---cc--------CCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          443 ---DK--------CRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       443 ---~~--------~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                         .+        ...++.||+++....++++++.+.++|
T Consensus       352 ~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          352 SAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             GGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence               00        012345999999888888877776665

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.94  E-value=2.4e-24  Score=217.53  Aligned_cols=295  Identities=14%  Similarity=0.130  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC-----C
Q 011567          154 DVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH-----N  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~-----~  223 (483)
                      ....++++.+++++|.+.  .+ +.++|++++..+++++.++||.|++..+.|.++.  ..+...|.+++.++.     .
T Consensus        51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  130 (396)
T 2ch1_A           51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF  130 (396)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCC
Confidence            457899999999999753  34 5577889999999999999999999888888764  466777888887773     4


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      |+++|++.+++.         ++++|+++++++++|.+.|+++|.++|++||+++|+||+|++|...         .++.
T Consensus       131 d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~---------~~~~  192 (396)
T 2ch1_A          131 SLETLARAIELH---------QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP---------FYMD  192 (396)
T ss_dssp             CHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------CCTT
T ss_pred             CHHHHHHHHHhC---------CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCc---------cchh
Confidence            788888887642         1567788888899999999999999999999999999999865321         1222


Q ss_pred             CCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcC---Cc------------------eeecCCCcHHHHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSS---SG------------------YVFSASLPPYLASAAITAI  360 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~---~~------------------~~fs~~~~p~~~aaa~~al  360 (483)
                      ..++|+++.|++|+++ +.| |+++.++++++.++...   .+                  .....+.+...++++.+++
T Consensus       193 ~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  272 (396)
T 2ch1_A          193 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL  272 (396)
T ss_dssp             TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred             hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHH
Confidence            2335899999999886 334 78888888887764321   00                  0111234666667777788


Q ss_pred             HHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCC----CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567          361 DVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPE----SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV  434 (483)
Q Consensus       361 ~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v  434 (483)
                      +.+.+  .++.+++++++++++.+.|+++ |+++..+..    ..++.+.++...     +   ..++.+.++++.||.+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~L~~~~gi~v  343 (396)
T 2ch1_A          273 AQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----D---WWKVSQYAMNNFSLEV  343 (396)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCBCC
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCC-----C---HHHHHHHHHHhCCEEE
Confidence            77632  2467888999999999999887 877764322    237777764211     1   2356776665559998


Q ss_pred             EeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          435 VTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       435 ~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      .+...+.     .+..+|+++ ...+|++|+++++++|+++++++..
T Consensus       344 ~~g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~  385 (396)
T 2ch1_A          344 QGGLGPT-----FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP  385 (396)
T ss_dssp             BCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred             ecCcccc-----CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence            7653221     134599999 5677999999999999999987643

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.93  E-value=4.1e-24  Score=212.72  Aligned_cols=310  Identities=14%  Similarity=0.060  Sum_probs=220.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      .+|++.+++.+.+.+...+.+ .+ .....+...++++++++++|.+   +.+++++|++|+..++.++.++ ++++...
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~   91 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVIS-HR-SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVN   91 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSC-TT-SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEEC
T ss_pred             CCHHHHHHHHHHhcCCccCcC-CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcC
Confidence            468899999888876221111 11 1122356789999999999863   3556688899999999999988 7777776


Q ss_pred             CchhH-HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567          201 GVHWG-IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY  274 (483)
Q Consensus       201 ~~h~s-~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~  274 (483)
                      ++|.. ....+...|.+++.++.+     |+++|+     ..+       ++++|+++++++++|.+.|+++|.++|++|
T Consensus        92 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~-----~~~-------~~~~v~~~~~~nptG~~~~l~~i~~la~~~  159 (362)
T 3ffr_A           92 GSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT-----VPA-------DAEIICLTHNETSSGVSMPVEDINTFRDKN  159 (362)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC-----CCT-------TCCEEEEESEETTTTEECCHHHHTTSGGGS
T ss_pred             cHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh-----ccC-------CccEEEEEcCCCCcceeCCHHHHHHHHHhC
Confidence            66652 334556668888777643     667776     222       367888888899999999999999999999


Q ss_pred             -CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCC-----ce----
Q 011567          275 -RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-----GY----  342 (483)
Q Consensus       275 -~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~-----~~----  342 (483)
                       |+++|+|++|++|...         .++  .++|++++|++|+++ +.| |+++.++++++.++....     ++    
T Consensus       160 p~~~li~D~a~~~~~~~---------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~  228 (362)
T 3ffr_A          160 KDALIFVDAVSSLPYPK---------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTI  228 (362)
T ss_dssp             TTSEEEEECTTTTTSSC---------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSH
T ss_pred             CCCEEEEecccccCCcc---------cCh--hHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccH
Confidence             9999999999865322         122  226899999999998 555 788888888776543211     11    


Q ss_pred             ----------eecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC----CCCCEEEEEec
Q 011567          343 ----------VFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN----PESPIVFLILE  406 (483)
Q Consensus       343 ----------~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~----~~~~i~~l~l~  406 (483)
                                ....+.+.....++.++++.+.+  .++..++.+++.+++.+.|++++|+.+...    ....++++.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~  308 (362)
T 3ffr_A          229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT  308 (362)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES
T ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC
Confidence                      11234566666666677776543  256888899999999999999888887641    23567777774


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .          ...++.+.+.+ +||.+.++..+.     .+..||++++..+|++|+++++++|++++
T Consensus       309 ~----------~~~~~~~~l~~-~gi~~~~g~~~~-----~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          309 M----------LPGEINKILEP-FDMAVGAGYGSK-----KETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             S----------CHHHHHHHHGG-GTEEEEECSGGG-----TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             C----------CHHHHHHHHHH-CCeEEecCcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3          13356776555 499998753321     12459999999999999999999998764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.93  E-value=1.3e-24  Score=226.52  Aligned_cols=346  Identities=14%  Similarity=0.102  Sum_probs=235.3

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-------CEEEeccc
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-------DSILYSYG  178 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-------~~i~~~sG  178 (483)
                      .+|+..+|+++  +.....+|.+.+++.+.+.+...+..   ...+...+..++.+.+++++|.+       ..+++++|
T Consensus        52 l~gnp~~~l~s--~~t~~~~~~v~~~l~~~~~~~~~~~~---~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~gg  126 (502)
T 3hbx_A           52 LDGNPRLNLAS--FVTTWMEPECDKLIMSSINKNYVDMD---EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGS  126 (502)
T ss_dssp             GSCCGGGBTTC--CSCCCCCHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSH
T ss_pred             cCCCCCceecc--ccCCCCCHHHHHHHHHHhccCCCChh---cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcH
Confidence            35555555554  23333678899988888766433221   11223456678888899999977       34467999


Q ss_pred             HHHHHhhhhhhccC--------Cc-----EEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhh
Q 011567          179 LSTMFSAIPCFCKK--------GD-----LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADN  239 (483)
Q Consensus       179 ~~a~~~ai~~~~~~--------gd-----iI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~  239 (483)
                      ++|+..++.++..+        |+     .|+++...|.++.++++..|.+++.++.+      |+++|++.+.+     
T Consensus       127 tea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-----  201 (502)
T 3hbx_A          127 SEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE-----  201 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT-----
T ss_pred             HHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh-----
Confidence            99999888776544        65     89999999999999999999998888743      56666665533     


Q ss_pred             hhccCccEEEEEecccCCCCCccChHHHHHHHHHc------CcEEEEeCccccccc---cCCCCccccccCCCCCceeEE
Q 011567          240 KRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY------RFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIV  310 (483)
Q Consensus       240 ~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~------~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~  310 (483)
                           .+++|++....+++|.+.|+++|.++|++|      |+++++|++|++++.   ....+.     .+....+|++
T Consensus       202 -----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~-----~~~~~~~D~v  271 (502)
T 3hbx_A          202 -----NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-----DFRLPLVKSI  271 (502)
T ss_dssp             -----TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-----STTSTTEEEE
T ss_pred             -----CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc-----ccCCCCceEE
Confidence                 257787777888889999999999999999      999999999987653   221111     1222567999


Q ss_pred             Ecccccccc-CCC-ce-eeccHHHH-HHHHhc-------CCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Q 011567          311 TAAMGHALA-TEG-GF-CTGSARVV-DHQRLS-------SSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNT  377 (483)
Q Consensus       311 ~~s~~K~lg-~~G-G~-i~~~~~~~-~~~~~~-------~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~  377 (483)
                      +.|.+|.++ +.| |+ ++.+++.. +.+...       ...+.+..+.+...+.+..++++.+.  ...+..++..+++
T Consensus       272 ~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a  351 (502)
T 3hbx_A          272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENM  351 (502)
T ss_dssp             EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999994 333 44 45555543 222110       00111223333333444445555443  2246788889999


Q ss_pred             HHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          378 AILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       378 ~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      ++|.+.|.+++++++..+ +..+++.+++++....   +   ..++.+. |.++|+++.....+.....  ...+||++.
T Consensus       352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~---~~~l~~~-L~~~Gi~v~~~~~p~~~~~--~~~lRisv~  422 (502)
T 3hbx_A          352 IVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCH---T---EFEISDM-LRRYGWIVPAYTMPPNAQH--ITVLRVVIR  422 (502)
T ss_dssp             HHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSC---C---HHHHHHH-HHTTTCBCCEEECCTTCTT--CEEEEEECC
T ss_pred             HHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcC---C---HHHHHHH-HHhCCcEEeeccCCcccCC--ceEEEEEeC
Confidence            999999999877988765 6789999998643210   1   2256665 5556998765443321100  134999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          457 AAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ..+|++|++++++.|+++++++..
T Consensus       423 ~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          423 EDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999987644

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.4e-24  Score=224.32  Aligned_cols=346  Identities=11%  Similarity=0.064  Sum_probs=229.0

Q ss_pred             ChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhC-C----CCEEEecccHHHHHhhhhhhccCCc----
Q 011567          125 HEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLG-T----PDSILYSYGLSTMFSAIPCFCKKGD----  194 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g-~----e~~i~~~sG~~a~~~ai~~~~~~gd----  194 (483)
                      +..+.+++.+.+++++. +..+.....|..++...+++.+.++.| .    ++.++++++++++..+++++.++||    
T Consensus       103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d  182 (498)
T 3ihj_A          103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRT  182 (498)
T ss_dssp             CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSE
T ss_pred             CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCC
Confidence            35566777888887542 222233344555666666666666654 2    4566678888999999999998875    


Q ss_pred             EEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---h
Q 011567          195 LIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---L  264 (483)
Q Consensus       195 iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L  264 (483)
                      .|+++.+.|..+...++..|.+++.++++       |+++|++.+++....     .++++|++..++|++|.+.+   +
T Consensus       183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-----~~~k~i~l~np~NPTG~v~s~~~l  257 (498)
T 3ihj_A          183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-----CDPKVLCIINPGNPTGQVQSRKCI  257 (498)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-----SEEEEEEEESSCTTTCCCCCHHHH
T ss_pred             EEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-----CCCeEEEEECCCCCCCCcCCHHHH
Confidence            99999999999999999999999888765       789999988764211     12566666688899999987   7


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCc--ccccc-CCCC---Cce-eEEEccccccc-c---CCCceee---ccHH
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRG--LTEHC-GVPV---DKI-DIVTAAMGHAL-A---TEGGFCT---GSAR  330 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g--~~~~~-~v~~---~~~-Di~~~s~~K~l-g---~~GG~i~---~~~~  330 (483)
                      ++|+++|++||+++|+||+|+.++++.....  +.... ++.+   +++ .++++|+||++ |   ..+||++   ++++
T Consensus       258 ~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~  337 (498)
T 3ihj_A          258 EDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE  337 (498)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH
T ss_pred             HHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHH
Confidence            8899999999999999999998877532111  11110 0000   111 47789999999 4   3459987   6888


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHH-----------HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP  399 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~  399 (483)
                      +++.+......  +. ..++....++.++++           ++++..+++++++++++++.+.|++++|+.+..+..+.
T Consensus       338 l~~~l~~~~~~--~~-~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~  414 (498)
T 3ihj_A          338 IKGQLVKLLSV--RL-CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAM  414 (498)
T ss_dssp             HHHHHHHHHHH--SC-CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS
T ss_pred             HHHHHHHHHhc--cC-CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEE
Confidence            88877654222  12 223444444433332           23333457788999999999999988898887654555


Q ss_pred             EEEEEecCCCCCchh---hHHHHHH-HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          400 IVFLILEKSTGSMKN---DLQLLED-IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       400 i~~l~l~~~~~~~~~---~~~~~~~-i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      +.++.+..+......   ......+ ++.++|++.||.+.++..+....  .+..+|+++.  ++++++++++++|++++
T Consensus       415 ~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~--~~~~~Ris~~--~~~e~l~~~i~~L~~~~  490 (498)
T 3ihj_A          415 YAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE--GTYHFRMTIL--PPVEKLKTVLQKVKDFH  490 (498)
T ss_dssp             EECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCT--TCCBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCC--CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence            666566322100000   0000112 24556766799999876544211  1235999984  89999999999999999


Q ss_pred             HHHHhcC
Q 011567          476 AVVLRDR  482 (483)
Q Consensus       476 ~~~~~~~  482 (483)
                      ++..++.
T Consensus       491 ~~~~~~~  497 (498)
T 3ihj_A          491 INFLEKY  497 (498)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9887653

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.93  E-value=1e-23  Score=218.69  Aligned_cols=305  Identities=13%  Similarity=0.154  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHhhhCCC------------CEEEecccHHHHHhhhhhhcc-------------------CCcEEEEcCCc
Q 011567          154 DVHLDCEARIAKFLGTP------------DSILYSYGLSTMFSAIPCFCK-------------------KGDLIVADEGV  202 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e------------~~i~~~sG~~a~~~ai~~~~~-------------------~gdiI~~~~~~  202 (483)
                      .+..++.+++++++|.+            ..+++++|++||..++.+...                   ++++|+++...
T Consensus       118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~  197 (481)
T 4e1o_A          118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQA  197 (481)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTS
T ss_pred             HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcc
Confidence            45555556667778865            347779999999888765432                   56799999999


Q ss_pred             hhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567          203 HWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR  277 (483)
Q Consensus       203 h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~  277 (483)
                      |.++.+++.+.|.+++.++.+     |+++|++.+++....    ...+.+|++....+++|.+.||++|.++|++||++
T Consensus       198 H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~----g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~  273 (481)
T 4e1o_A          198 HSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQR----GLVPVFVCATLGTTGVCAFDCLSELGPICAREGLW  273 (481)
T ss_dssp             CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred             hHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhC----CCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCe
Confidence            999999999999999998865     899999999764321    11245677777778889999999999999999999


Q ss_pred             EEEeCccccccc-cCCCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeec--------
Q 011567          278 VFLDESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFS--------  345 (483)
Q Consensus       278 li~DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs--------  345 (483)
                      +++|++|+++.+ +...++..  .|+  ..+|.++.+.+|+++.+   |++++.++............|.+.        
T Consensus       274 lhvDaA~g~~~~~~~~~~~~~--~gi--~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~  349 (481)
T 4e1o_A          274 LHIDAAYAGTAFLCPEFRGFL--KGI--EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATD  349 (481)
T ss_dssp             EEEECTTGGGGGGSGGGGGGG--TTG--GGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCC
T ss_pred             EEeehhhHHHHHhChhhHHHh--cCc--ccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCC
Confidence            999999987753 32222221  233  34589999999999733   345566665543221112222211        


Q ss_pred             -------CCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567          346 -------ASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       346 -------~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~  416 (483)
                             .+.+ ..+....++++.+.  ...+++++..++++++.+.|++++++++..++..+++++++...       .
T Consensus       350 ~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~  421 (481)
T 4e1o_A          350 FMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-------N  421 (481)
T ss_dssp             GGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-------H
T ss_pred             cccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-------h
Confidence                   1111 11222233333332  22467889999999999999998899988777889999988531       2


Q ss_pred             HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC-CCHHHHHHHHHHHHHHHHHHHh
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA-HSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~-~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ....++.+++.+++.+++.+.....      ...+|+++... .|++||++++++|+++++++++
T Consensus       422 ~~~~~l~~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~  480 (481)
T 4e1o_A          422 SLTENVLKEIAKAGRLFLIPATIQD------KLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS  480 (481)
T ss_dssp             HHHHHHHHHHHHHCSSBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCeEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            2345777777766445555432211      12399997654 5899999999999999988764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.93  E-value=5e-25  Score=227.76  Aligned_cols=346  Identities=17%  Similarity=0.173  Sum_probs=218.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      .|+.||||.+....     |.+.+++.+++.. +.      ..|+..+...+|++++++++|.++++++++|++|+..++
T Consensus        39 ~~~~ylD~~~~~~~-----~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al  106 (467)
T 2oqx_A           39 SEDVFIDLLTDSGT-----GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI  106 (467)
T ss_dssp             GGGCSEECSCCSSC-----SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHH
T ss_pred             CCCeeEecccCCCc-----HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHH
Confidence            46789999775332     8888888888753 21      145556677899999999999998999999999999999


Q ss_pred             hhhccC-----C----cEEEEcCCchhHHHhH-hhhcCCeEEEe--------------cC-CCHHHHHHHHHHhhhhhhh
Q 011567          187 PCFCKK-----G----DLIVADEGVHWGIQNG-LYLSRSTVVYF--------------KH-NDMDSLRNTLERVTADNKR  241 (483)
Q Consensus       187 ~~~~~~-----g----diI~~~~~~h~s~~~g-~~~s~~~v~~~--------------~~-~d~~~Le~~l~~~~~~~~~  241 (483)
                      +++.++     |    |.|+++ .+|+....+ ....+..+...              .. .|+++||+.+++....   
T Consensus       107 ~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~---  182 (467)
T 2oqx_A          107 PVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN---  182 (467)
T ss_dssp             HHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG---
T ss_pred             HHHhccccccCCCCccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCC---
Confidence            988776     7    877766 577543322 22333333221              11 2789999988753211   


Q ss_pred             ccCccEEEEEecccCCC-CCccC---hHHHHHHHHHcCcEEEEeCcccc-ccc-------cCCCCccccccCCC-CCcee
Q 011567          242 AKKLRRYIVVEAVYQNS-GQIAP---LDELIRLKEKYRFRVFLDESNSF-GVL-------GRSGRGLTEHCGVP-VDKID  308 (483)
Q Consensus       242 ~~~~~~~iv~e~v~~~~-G~i~~---L~~l~~l~~k~~~~li~DEa~s~-g~l-------g~~G~g~~~~~~v~-~~~~D  308 (483)
                         ++++|+++++++++ |.+.+   |++|+++|++||++||+|+++++ +.+       +..|..... ++.. ...+|
T Consensus       183 ---~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~-~~~~~~~~~d  258 (467)
T 2oqx_A          183 ---NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ-ITRETYKYAD  258 (467)
T ss_dssp             ---GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH-HHHHHGGGCS
T ss_pred             ---ceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHH-HhhhhhccCC
Confidence               37889999988885 77765   78999999999999999998876 433       333332211 1100 01236


Q ss_pred             EEEccccccccCC-CceeeccHH-HHHH---HHhc---CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          309 IVTAAMGHALATE-GGFCTGSAR-VVDH---QRLS---SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       309 i~~~s~~K~lg~~-GG~i~~~~~-~~~~---~~~~---~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      +++.|++|++|.. ||+++++++ +++.   ++..   ..+....+..+...+++....++... .++.+++..++.+++
T Consensus       259 ~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~-~~~~~~~~~~~~~~l  337 (467)
T 2oqx_A          259 MLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWLAYRIAQVQYL  337 (467)
T ss_dssp             EEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             eEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhh-hHHHHHHHHHHHHHH
Confidence            7788999999855 888888766 4433   2221   11111111222222222212222211 123566678889999


Q ss_pred             HHhhccCCCceeecCCCCCEEEEEecC--CCCCchhhHHH-HHHHHHHHHHhCCEEEEeeccccccc--------CCCCC
Q 011567          381 RTGLSDIHGLSIASNPESPIVFLILEK--STGSMKNDLQL-LEDIADWALKEDGVFVVTSKRSMLDK--------CRLPV  449 (483)
Q Consensus       381 ~~~L~~~~~~~i~~~~~~~i~~l~l~~--~~~~~~~~~~~-~~~i~~~~l~~~Gv~v~~~~~~~~~~--------~~~~~  449 (483)
                      .+.|.++ ++++. +..+.++++.+..  +...   .... ..+++..++.++||.+.+........        .....
T Consensus       338 ~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~  412 (467)
T 2oqx_A          338 VDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIP---ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE  412 (467)
T ss_dssp             HHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSC---GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCC
T ss_pred             HHHHHHC-CCeee-cCCceEEEEechhhcccCC---cccccHHHHHHHHHHhcCceecccccccccccccccccccCccC
Confidence            9999887 77776 5567788887742  1100   0111 34567766356699998743200000        00014


Q ss_pred             ceEEEccCC-CCHHHHHHHHHHHHHHHHHH
Q 011567          450 GIRLFVSAA-HSEADLVKACESLKRISAVV  478 (483)
Q Consensus       450 ~lRi~~~~~-~t~edi~~~~~~l~~~~~~~  478 (483)
                      .||++++.. +|++||++++++|+++++++
T Consensus       413 ~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~  442 (467)
T 2oqx_A          413 LLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             EEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence            599999998 99999999999999998754

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.93  E-value=3e-24  Score=216.66  Aligned_cols=323  Identities=16%  Similarity=0.170  Sum_probs=228.8

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF  189 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~  189 (483)
                      ++|+|+...     -++++.+++.+++++..         ++..+...++++.+++++|.++++++++|++|+..+++++
T Consensus         9 ~~i~~~~p~-----~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~   74 (393)
T 1mdo_A            9 DFLPFSRPA-----MGAEELAAVKTVLDSGW---------ITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMAL   74 (393)
T ss_dssp             CCBCSCCCC-----CCHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHT
T ss_pred             cccccCCCC-----CCHHHHHHHHHHHhcCC---------cCCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHc
Confidence            356666521     23788899999988731         1234678899999999999998899999999999999999


Q ss_pred             -ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc
Q 011567          190 -CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA  262 (483)
Q Consensus       190 -~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~  262 (483)
                       .++||.|+++.+.|.++...++..|.+++.++.      .|+++|++.+++          ++++|++.+   ++|.+.
T Consensus        75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~---~~G~~~  141 (393)
T 1mdo_A           75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP----------QTKAIIPVH---YAGAPA  141 (393)
T ss_dssp             TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----------TEEEECCBC---GGGCCC
T ss_pred             CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC----------CceEEEEeC---CCCCcC
Confidence             899999999999999999999999999888764      267777766642          256776654   468889


Q ss_pred             ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhc
Q 011567          263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLS  338 (483)
Q Consensus       263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~  338 (483)
                      |+++|.++|++||+++|+||+|+.|... .++.    ++.    .|+++.|++  |+++ +.||+++++ +++++.++..
T Consensus       142 ~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~----~~~----~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~  212 (393)
T 1mdo_A          142 DLDAIYALGERYGIPVIEDAAHATGTSY-KGRH----IGA----RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSL  212 (393)
T ss_dssp             CHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEE----TTS----SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEECccccCCeE-CCee----cCC----CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHH
Confidence            9999999999999999999999976432 2221    222    489999998  9996 557888886 7787766432


Q ss_pred             C-Cc--------------eeec-------CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC-
Q 011567          339 S-SG--------------YVFS-------ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN-  395 (483)
Q Consensus       339 ~-~~--------------~~fs-------~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-  395 (483)
                      . .+              +.|.       ..++++.++++...++.++   +..++.+++.+++++.|.+++ +.+... 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~-~~~~~~~  288 (393)
T 1mdo_A          213 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD---ALNARRAAIAAQYHQAMADLP-FQPLSLP  288 (393)
T ss_dssp             TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHTSS-CEECCCC
T ss_pred             HhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC-cccccCC
Confidence            1 11              2221       2357887777776666543   467777889999999998873 665421 


Q ss_pred             -----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCCC-------CceEEE
Q 011567          396 -----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRLP-------VGIRLF  454 (483)
Q Consensus       396 -----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~~-------~~lRi~  454 (483)
                           ..+.++++.++...     ......++.+.+. ++||.+.+...+...         ....+       ..||++
T Consensus       289 ~~~~~~~~~~~~v~~~~~~-----~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~  362 (393)
T 1mdo_A          289 SWEHIHAWHLFIIRVDEAR-----CGITRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP  362 (393)
T ss_dssp             SSCEECCCSCEEEECCHHH-----HSSCHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC
T ss_pred             CCCCCceeEEEEEEecccc-----cccCHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEec
Confidence                 23457788774200     0001335666544 469998875433100         00111       249999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++..+|++|+++++++|+++++..
T Consensus       363 ~~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          363 LFPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999887653

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.93  E-value=2.3e-25  Score=226.54  Aligned_cols=327  Identities=10%  Similarity=0.045  Sum_probs=220.3

Q ss_pred             CeeEEEeecCCCCCCC----CChHHHHHHHH-HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-C-------CCCEEE
Q 011567          108 GKEVVNFASANYLGLI----GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-G-------TPDSIL  174 (483)
Q Consensus       108 G~~~id~~s~~~lG~~----~~p~i~~a~~~-~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g-------~e~~i~  174 (483)
                      |++++||+++.|+++.    ..|.+.+++.+ .++.....      .|+......++++.+++++ +       .++.++
T Consensus        28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~  101 (412)
T 1yaa_A           28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNH------EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVIS  101 (412)
T ss_dssp             CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCccccc------CCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEE
Confidence            5678999999875552    45778888887 76521111      1222223467777777776 3       346667


Q ss_pred             --ecccHHHHHhhh--hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhcc
Q 011567          175 --YSYGLSTMFSAI--PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       175 --~~sG~~a~~~ai--~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~  243 (483)
                        +++|++|+..++  .....+||.|+++.+.|..+...++..|.+++.++.       .|+++|++.+++...      
T Consensus       102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~------  175 (412)
T 1yaa_A          102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE------  175 (412)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT------
T ss_pred             EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCC------
Confidence              778889988774  333458998888888888888888888998888776       268888888765311      


Q ss_pred             CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC---CCCccccccCCCCCc--eeEEEcccc
Q 011567          244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR---SGRGLTEHCGVPVDK--IDIVTAAMG  315 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~---~G~g~~~~~~v~~~~--~Di~~~s~~  315 (483)
                       .++++++..+++++|.+.+   +++|+++|++||+++|+||+|+.+.++.   .+..+....+.. ++  .+++++|+|
T Consensus       176 -~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~s  253 (412)
T 1yaa_A          176 -GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL-STVSPVFVCQSFA  253 (412)
T ss_dssp             -TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT-TTTCCEEEEEECT
T ss_pred             -CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcC-CCCcceEEEeccC
Confidence             2466666888899999987   6789999999999999999997654431   111221211111 11  378899999


Q ss_pred             ccccCCC---ceee--c-----cHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-------cCcHHHHHHH
Q 011567          316 HALATEG---GFCT--G-----SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKLK  374 (483)
Q Consensus       316 K~lg~~G---G~i~--~-----~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-------~~~~~~~~l~  374 (483)
                      |++|+.|   ||++  +     +++    +++.++..... .++ +.+++..+++.++++...       ..++.+++++
T Consensus       254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  331 (412)
T 1yaa_A          254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EVS-NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRIT  331 (412)
T ss_dssp             TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-ccC-CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999767   8887  6     666    66666542111 122 236666666777776431       2345788888


Q ss_pred             HHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCce
Q 011567          375 KNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGI  451 (483)
Q Consensus       375 ~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~l  451 (483)
                      ++.+++.+.|+++.   ++++..+..+.++++.+         +.   ..+ ..+++++||.+.+             .+
T Consensus       332 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~-~~~l~~~gi~v~~-------------~~  385 (412)
T 1yaa_A          332 KMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---------TP---QMV-KRLEETHAVYLVA-------------SG  385 (412)
T ss_dssp             HHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------CH---HHH-HHHHHHHCEECCT-------------TS
T ss_pred             HHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------CH---HHH-HHHHHhCCEEecc-------------Cc
Confidence            89999999998763   36655443444444322         11   133 4456566999864             28


Q ss_pred             EEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          452 RLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       452 Ri~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ||+++. +|++++++++++|+++++.
T Consensus       386 Ris~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          386 RASIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             EEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             EEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence            999974 6999999999999998764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.93  E-value=5.6e-25  Score=228.25  Aligned_cols=336  Identities=15%  Similarity=0.173  Sum_probs=223.5

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChH----HHHHHHHHHHhhhCCCC-----EEEeccc
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTID----VHLDCEARIAKFLGTPD-----SILYSYG  178 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~----~~~~l~~~La~~~g~e~-----~i~~~sG  178 (483)
                      +.|++..+ |+    .+|.+.+++.+.+.. |..|..+++. |+..+    +...+++++++++|.+.     .+++++|
T Consensus        45 ~~i~L~a~e~~----~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG  119 (483)
T 1rv3_A           45 VGLELIASENF----ASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG  119 (483)
T ss_dssp             SSEECCTTCCC----CCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred             cCeEEEcCCCC----CCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence            35777655 33    568999999888875 4334444443 33333    33455589999999763     3788999


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHh--------HhhhcC--CeEEEecC------CCHHHHHHHHHHhhhhhhhc
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSR--STVVYFKH------NDMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~--------g~~~s~--~~v~~~~~------~d~~~Le~~l~~~~~~~~~~  242 (483)
                      ++++..++.++.++||.|++....|.++..        ++..+|  ...+.++.      .|+++|++.+++.       
T Consensus       120 s~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~-------  192 (483)
T 1rv3_A          120 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-------  192 (483)
T ss_dssp             HHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc-------
Confidence            999999899999999999999988877653        334444  44555522      3788999888642       


Q ss_pred             cCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCC
Q 011567          243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATE  321 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~  321 (483)
                        ++++|++ +..+++ .+.|+++|+++|++||+++|+|++|+.|.... |  ... ..+  ..+|++++|++|+| |+.
T Consensus       193 --~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~-~--~~~-~p~--~~~div~~s~~K~l~Gpr  262 (483)
T 1rv3_A          193 --HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA-G--VVP-SPF--EHCHVVTTTTHKTLRGCR  262 (483)
T ss_dssp             --CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH-T--SSC-CGG--GTCSEEEEESSGGGCCCS
T ss_pred             --CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc-C--CCC-CCC--CCCcEEEecCcccCCCCC
Confidence              2567777 666665 88999999999999999999999998765431 1  110 000  14589999999999 677


Q ss_pred             CceeeccHH---------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhh
Q 011567          322 GGFCTGSAR---------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       322 GG~i~~~~~---------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L  384 (483)
                      ||+++++++               +.+.+.....+.. .++.+....++..++++.+.+  .++..+++.++++++.+.|
T Consensus       263 gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L  341 (483)
T 1rv3_A          263 AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAAL  341 (483)
T ss_dssp             CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence            899988764               3333322111111 223344444555566766542  2467888999999999999


Q ss_pred             ccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC---
Q 011567          385 SDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS---  460 (483)
Q Consensus       385 ~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t---  460 (483)
                      .+. |+++..+. .+.++++.+....    .+   ..++.+ .|++.||.+.....|.......+.++||+++..+|   
T Consensus       342 ~~~-g~~~~~~~~~~~~~~v~~~~~g----~~---~~~~~~-~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~  412 (483)
T 1rv3_A          342 VEL-GYKIVTGGSDNHLILVDLRSKG----TD---GGRAEK-VLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL  412 (483)
T ss_dssp             HHT-TCEEGGGSCSSSEEEEEGGGGT----CC---HHHHHH-HHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC
T ss_pred             Hhc-CCEeccCCCCCceEEEeccCCC----CC---HHHHHH-HHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCC
Confidence            987 88887543 3456677764211    01   123444 46667999983322211000113569999986556   


Q ss_pred             -HHHHHHHHHHHHHHHHH
Q 011567          461 -EADLVKACESLKRISAV  477 (483)
Q Consensus       461 -~edi~~~~~~l~~~~~~  477 (483)
                       ++|+++++++|+++++.
T Consensus       413 ~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          413 LEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence             99999999999998876

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.6e-24  Score=222.53  Aligned_cols=345  Identities=13%  Similarity=0.112  Sum_probs=219.8

Q ss_pred             eEE-EeecCCCCCCCCChHHHHHHHHHHHhcCCC-------C--CCCCCcccChHHHHHHHHHHHhhh------C--CCC
Q 011567          110 EVV-NFASANYLGLIGHEKLLESCTSALEKYGVG-------S--CGPRGFYGTIDVHLDCEARIAKFL------G--TPD  171 (483)
Q Consensus       110 ~~i-d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-------~--~~~~~~~g~~~~~~~l~~~La~~~------g--~e~  171 (483)
                      .+| ||+.+++-.   .|.+.+++.+++.+....       .  ......|+......++++.+|+++      +  .++
T Consensus        32 ~~i~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~  108 (444)
T 3if2_A           32 QPVNMLGGGNPAK---IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN  108 (444)
T ss_dssp             SCCEECSCCCCCC---CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred             hhhhccCCCCCCc---ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH
Confidence            567 888775432   366666666666553211       1  000112333333567778888776      2  356


Q ss_pred             EEEecccHHHHHhhhhhhccCCc--------------EEEE-cCCchhHHHhH------hhhcCCeEEEecC--------
Q 011567          172 SILYSYGLSTMFSAIPCFCKKGD--------------LIVA-DEGVHWGIQNG------LYLSRSTVVYFKH--------  222 (483)
Q Consensus       172 ~i~~~sG~~a~~~ai~~~~~~gd--------------iI~~-~~~~h~s~~~g------~~~s~~~v~~~~~--------  222 (483)
                      .+++++|++|+..++++++++||              .|++ ..+.|..+...      +...+..++.++.        
T Consensus       109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  188 (444)
T 3if2_A          109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFK  188 (444)
T ss_dssp             EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEE
T ss_pred             EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccc
Confidence            77778889999999999998887              5555 46666555442      2334556655552        


Q ss_pred             --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc
Q 011567          223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT  297 (483)
Q Consensus       223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~  297 (483)
                        -|+++|++.+++...       .+++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+..+....+..
T Consensus       189 ~~~d~~~l~~~l~~~~~-------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~  261 (444)
T 3if2_A          189 YRVDFEALENLPALKEG-------RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH  261 (444)
T ss_dssp             EECCHHHHHTCHHHHTT-------CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC
T ss_pred             cCCCHHHHHHHHHhcCC-------CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc
Confidence              388888887654333       2677777777889999999   8999999999999999999997543221111111


Q ss_pred             cccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCcH-HH
Q 011567          298 EHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPD-LI  370 (483)
Q Consensus       298 ~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~-~~  370 (483)
                          ....+.+++++|+||+ +..|   ||+++++++++.++.....+.++.  +++.++++.+.++...   ...+ +.
T Consensus       262 ----~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~  334 (444)
T 3if2_A          262 ----LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAP--TRFGAAIATPLVANDRIKQLSDNEIK  334 (444)
T ss_dssp             ----CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHTSHHHHHHHHTHH
T ss_pred             ----ccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHcCchhHHHHHHHH
Confidence                0113458889999997 4334   899999999988766544444443  4455555555554221   1111 45


Q ss_pred             HHHHHHHHHHHHhhcc-CC--CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC-
Q 011567          371 TKLKKNTAILRTGLSD-IH--GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR-  446 (483)
Q Consensus       371 ~~l~~~~~~l~~~L~~-~~--~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~-  446 (483)
                      +.++++.+.+.+.|.+ ++  ++.+..+..+.++++.++....    +   ..+++..+ .++||.+.++..+...... 
T Consensus       335 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~----~---~~~l~~~l-~~~gi~v~~g~~~~~~~~~~  406 (444)
T 3if2_A          335 PFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI----S---TLDLYERL-KAKGTLIVPSEYFFPGVDVS  406 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS----C---HHHHHHHH-HHTTEECEEGGGSCTTCCCT
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC----C---HHHHHHHH-HHCCeEEecchhhcCCCCCc
Confidence            5566666677666654 33  4556555567888888853110    1   23456654 5569999987653221100 


Q ss_pred             ----CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          447 ----LPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       447 ----~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                          .+..+||+++.  |+++|++++++|+++++++..+
T Consensus       407 ~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~~  443 (444)
T 3if2_A          407 DYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYDN  443 (444)
T ss_dssp             TCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence                11359999986  9999999999999999988654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.93  E-value=5.6e-25  Score=224.33  Aligned_cols=327  Identities=11%  Similarity=0.036  Sum_probs=216.0

Q ss_pred             eeEEEeecCC---CCCCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CC---CEEEeccc
Q 011567          109 KEVVNFASAN---YLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TP---DSILYSYG  178 (483)
Q Consensus       109 ~~~id~~s~~---~lG~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e---~~i~~~sG  178 (483)
                      ..+|||+.+.   ..+.. ..|.+.+++.+++++.+....+  ...|..++...+++.+....+   .+   +.+++++|
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~  126 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYL--PIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG  126 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCC--CCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence            3689999984   44442 2379999999998873221111  123444444444444443333   23   34566788


Q ss_pred             HHHHHhhhh--hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----C---CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567          179 LSTMFSAIP--CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       179 ~~a~~~ai~--~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~---d~~~Le~~l~~~~~~~~~~~~~~~~i  249 (483)
                      ++|+..+++  ++.++||.|+++.++|.++...++..|.+++.++.    +   |+++|++.+++..+       +++++
T Consensus       127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~v  199 (420)
T 4f4e_A          127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP-------GTIVV  199 (420)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT-------TCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC-------CCEEE
Confidence            899998854  56789999999999999999999999999988876    3   78888888864322       37889


Q ss_pred             EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC--CCccccccCCCCCceeEEEccccccccCCC--
Q 011567          250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~--G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      +++.++|++|.+.+   +++|+++|++||+++|+||+|+.+.++..  ...+....+.  .+.+++++|+||++|..|  
T Consensus       200 ~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~R  277 (420)
T 4f4e_A          200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAA--NLNVFVSSSFSKSFSLYGER  277 (420)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHT--TCCEEEEEECTTTTTCGGGC
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhc--CCCEEEEEeCCccCcCcCCC
Confidence            99999999999977   67899999999999999999987665421  1111122222  234788999999999766  


Q ss_pred             -ceee---ccHHHHHHH----HhcCCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhccC
Q 011567          323 -GFCT---GSARVVDHQ----RLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       323 -G~i~---~~~~~~~~~----~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~~  387 (483)
                       ||++   +++++++.+    +... ...++. .|+..+.++.+.++..       +..++++++++++.+++.+.|+++
T Consensus       278 iG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          278 VGALSIITDSKDEAARVLSQLKRVI-RTNYSN-PPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHH-HTTTSS-CCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEcCCHHHHHHHHHHHHHHH-hcccCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             8864   355655432    2111 011222 2444444444444321       112457888899999999999876


Q ss_pred             ---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH
Q 011567          388 ---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       388 ---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi  464 (483)
                         .++.+..+..+.+.++.+.         .    +.+..+++++||++.+.             .|+++. .+|++++
T Consensus       356 ~~~~~~~~~~~~~g~~~~~~~~---------~----~~~~~~l~~~gI~v~~~-------------~Ris~~-~~~~~~i  408 (420)
T 4f4e_A          356 GIERDFSFINAQRGMFSYSGLT---------S----AQVDRLREEFGIYAVST-------------GRICVA-ALNTRNL  408 (420)
T ss_dssp             TCSSCCTHHHHSCSSEEECCCC---------H----HHHHHHHHHHCEECCTT-------------SEEEGG-GCCTTTH
T ss_pred             CCCCCceeECCCccEEEEeCCC---------H----HHHHHHHHhCCEEecCC-------------CeEEEe-cCCHHHH
Confidence               3666554445555554441         1    12334555669988642             599985 4578889


Q ss_pred             HHHHHHHHHHH
Q 011567          465 VKACESLKRIS  475 (483)
Q Consensus       465 ~~~~~~l~~~~  475 (483)
                      ++++++|++++
T Consensus       409 ~~~~~~l~~~l  419 (420)
T 4f4e_A          409 DVVANAIAAVL  419 (420)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.93  E-value=4e-24  Score=214.79  Aligned_cols=288  Identities=13%  Similarity=0.094  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHhhhCC------CCEEEecccHHHHHhhhhhhc---cCCcEEEEc-CCc-hhHHHhHhhhcCCeEEEecC-
Q 011567          155 VHLDCEARIAKFLGT------PDSILYSYGLSTMFSAIPCFC---KKGDLIVAD-EGV-HWGIQNGLYLSRSTVVYFKH-  222 (483)
Q Consensus       155 ~~~~l~~~La~~~g~------e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~-~~~-h~s~~~g~~~s~~~v~~~~~-  222 (483)
                      ...+++++++++++.      ++.++.++|++++..+++++.   ++||.|++. .++ |.++...+...|.+++.++. 
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~  118 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL  118 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC
Confidence            466788999999875      345566888999999999987   889876544 444 44444667778888888876 


Q ss_pred             -----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc--CcEEEEeCccccccccCCCCc
Q 011567          223 -----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRG  295 (483)
Q Consensus       223 -----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g  295 (483)
                           .|+++|++.+++.         ++++|+++++++++|.+.|+++|+++|++|  |+++|+||+|++|...     
T Consensus       119 ~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~-----  184 (385)
T 2bkw_A          119 KIGESVPLELITEKLSQN---------SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE-----  184 (385)
T ss_dssp             STTSCCCHHHHHHHHHHS---------CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC-----
T ss_pred             CCCCCCCHHHHHHHHhcC---------CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc-----
Confidence                 3788888887641         256888899999999999999999999999  9999999999865321     


Q ss_pred             cccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHH-HHHh----------------------cCCc-eeecCCCc
Q 011567          296 LTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVD-HQRL----------------------SSSG-YVFSASLP  349 (483)
Q Consensus       296 ~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~-~~~~----------------------~~~~-~~fs~~~~  349 (483)
                          +++...++|++++|++|+++ +.| |+++++++.++ .++.                      ...+ ..+..+.+
T Consensus       185 ----~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (385)
T 2bkw_A          185 ----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPP  260 (385)
T ss_dssp             ----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred             ----ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCC
Confidence                12222245899999999885 456 88888888766 4310                      0000 01123456


Q ss_pred             HHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhh-ccCCCceeecC-----CCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          350 PYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGL-SDIHGLSIASN-----PESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       350 p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L-~~~~~~~i~~~-----~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      +..++++.++++.+.+  .++.+++++++++++.+.| +++ ++.+...     ..++++++.+++           ..+
T Consensus       261 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  328 (385)
T 2bkw_A          261 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD-----------PPD  328 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-----------HHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC-----------HHH
Confidence            7777777788887653  2467888999999999999 887 8877642     246788887731           235


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEE-cc---CCCCHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF-VS---AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~-~~---~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.+.+. ++||.+.+...+..    .+..+|++ ++   ..+|++|+++++++|++++++
T Consensus       329 ~~~~l~-~~gi~v~~g~~~~~----~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          329 VIAFLK-SHGVVIAGGIHKDI----GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             HHHHHH-HTTEECBCCCCTTT----GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHH-HCCeEEeCCCCccc----CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            666554 56999987543211    12449999 54   257999999999999987643

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.93  E-value=1.7e-23  Score=218.50  Aligned_cols=313  Identities=13%  Similarity=0.105  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhhhcc--------------CCcEEEEcCCchhHHHhHhhhcCC
Q 011567          154 DVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------------KGDLIVADEGVHWGIQNGLYLSRS  215 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~~~~--------------~gdiI~~~~~~h~s~~~g~~~s~~  215 (483)
                      .+..++.+++++++|.+    ..+++++|++|+..++.+...              +++.|+++...|.++.++++..|.
T Consensus       135 ~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~  214 (511)
T 3vp6_A          135 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF  214 (511)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCC
Confidence            45556666778888865    456778999999888766543              577999999999999999999887


Q ss_pred             ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567          216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                         +++.++.+     |+++|++.+++....    ...+++|++...++++|.+.||++|.++|++||+++++|++|++|
T Consensus       215 g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~----g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~  290 (511)
T 3vp6_A          215 GTDNVILIKCNERGKIIPADFEAKILEAKQK----GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG  290 (511)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             CCCcEEEeecCCCCccCHHHHHHHHHHHHhc----CCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhh
Confidence               88888865     899999999764321    123678888889999999999999999999999999999999987


Q ss_pred             cccC-CCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCC----------------
Q 011567          288 VLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSAS----------------  347 (483)
Q Consensus       288 ~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~----------------  347 (483)
                      .+.. ..+..  ..|+  ..+|+++++.+|+++.+   |++++.++...+........|.+...                
T Consensus       291 ~~~~~~~~~~--~~g~--~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~  366 (511)
T 3vp6_A          291 LLMSRKHRHK--LNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQC  366 (511)
T ss_dssp             GGGCTTTGGG--GTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCS
T ss_pred             HhhChhhhhh--ccCC--ccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCC
Confidence            7532 11111  1133  35599999999999732   33455566655554332333332111                


Q ss_pred             CcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCC----ch----hh
Q 011567          348 LPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGS----MK----ND  415 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~----~~----~~  415 (483)
                      ..+..+.+..++++.+.  ..++++++..++++++++.|++.+|+++..  .+..+++.+++.+....    ..    ..
T Consensus       367 ~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l  446 (511)
T 3vp6_A          367 GRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKL  446 (511)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHH
Confidence            00112233334444332  225688999999999999999988999876  46778888876432110    00    11


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .....++.+.+++++.+++.......-     ...+|+++ +..+|++||++++++|+++.+.+.
T Consensus       447 ~~~~~~l~~~L~~~G~~~~~~~~~~~~-----~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~  506 (511)
T 3vp6_A          447 HKVAPKIKALMMESGTTMVGYQPQGDK-----ANFFRMVISNPAATQSDIDFLIEEIERLGQDLH  506 (511)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEEEEETTE-----EEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEEeCCc-----eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            123456777777663344432111100     01399998 788999999999999998876553

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.93  E-value=7.4e-24  Score=219.30  Aligned_cols=304  Identities=12%  Similarity=0.073  Sum_probs=207.4

Q ss_pred             HHHHHHHHHHhhhCCC-----------CEEEecccHHHHHhhhhhhcc-------------------CCcEEEEcCCchh
Q 011567          155 VHLDCEARIAKFLGTP-----------DSILYSYGLSTMFSAIPCFCK-------------------KGDLIVADEGVHW  204 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e-----------~~i~~~sG~~a~~~ai~~~~~-------------------~gdiI~~~~~~h~  204 (483)
                      +..++.+++++++|.+           ..+++++|+++|..++.+...                   +++.|+++...|.
T Consensus       114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~  193 (475)
T 3k40_A          114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS  193 (475)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH
T ss_pred             HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH
Confidence            4444455567778876           367789999999888765421                   3468999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL  280 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~  280 (483)
                      ++.+++...|.+++.++.+    |+++|++.+++....    ...+.+|++....+++|.+.|+++|.++|++||+++++
T Consensus       194 s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~----~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhv  269 (475)
T 3k40_A          194 SVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAE----GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHV  269 (475)
T ss_dssp             HHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHC----CCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEE
Confidence            9999999999999998874    899999999764321    11245566666677789999999999999999999999


Q ss_pred             eCccccccc-cCCCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHH-HHHHhcCCcee------------
Q 011567          281 DESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVV-DHQRLSSSGYV------------  343 (483)
Q Consensus       281 DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~-~~~~~~~~~~~------------  343 (483)
                      |++|+++.+ +...++..  .++  ..+|.++.+.+|+++.+   |++++.++... +.+.. ...|.            
T Consensus       270 D~A~~~~~~~~~~~~~~~--~gi--~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~~~  344 (475)
T 3k40_A          270 DAAYAGSAFICPEYRHLM--KGI--ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV-DPLYLKHDMQGSAPDYR  344 (475)
T ss_dssp             ECTTGGGGGGSGGGGGGG--TTG--GGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------------
T ss_pred             eHHhHHHHHhCHhhHHHh--cCc--ccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcC-CccccCCCcCCCCCCcc
Confidence            999987653 22222221  233  34589999999999732   33445554432 22211 11111            


Q ss_pred             ---ecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567          344 ---FSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       344 ---fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~  418 (483)
                         ...+. +..+....++++.+.  ...+++++..++++++++.|++++++++..++..+++++++...       ...
T Consensus       345 ~~~~~~sr-~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-------~~~  416 (475)
T 3k40_A          345 HWQIPLGR-RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-------NER  416 (475)
T ss_dssp             ----CCCG-GGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-------HHH
T ss_pred             cccccCCC-cccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-------hHH
Confidence               11111 122333334454443  22468889999999999999998899998777889999998531       223


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ..++.+++.+++++++.+.....      ...+|+++.. ..|++||++++++|++++++++.+
T Consensus       417 ~~~l~~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~~  474 (475)
T 3k40_A          417 NEALLKRINGRGHIHLVPAKIKD------VYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE  474 (475)
T ss_dssp             HHHHHHHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCcEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            45778877777555555432211      1349999764 458999999999999999988753

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.93  E-value=6e-25  Score=222.06  Aligned_cols=323  Identities=15%  Similarity=0.103  Sum_probs=213.8

Q ss_pred             eeEEEeecCC---CCCCC-CChHHHHHHHH-HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C---CC---CEE
Q 011567          109 KEVVNFASAN---YLGLI-GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G---TP---DSI  173 (483)
Q Consensus       109 ~~~id~~s~~---~lG~~-~~p~i~~a~~~-~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g---~e---~~i  173 (483)
                      ..++||+.+.   +.+.. .+|.+.+++.+ .++..+....++  ..|.    .++++.+++++    +   .+   +.+
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~--~~g~----~~lr~~la~~~~~~~~~~~~~~~~~i~   99 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP--MEGL----NCYRHAIAPLLFGADHPVLKQQRVATI   99 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCC--TTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCC--CCch----HHHHHHHHHHHhcCCcccccccceEEE
Confidence            3589999984   44442 23799999998 887643321111  2333    44555555554    3   23   345


Q ss_pred             EecccHHHHHhhhh--hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----C---CHHHHHHHHHHhhhhhhhccC
Q 011567          174 LYSYGLSTMFSAIP--CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       174 ~~~sG~~a~~~ai~--~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~---d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      ++++|++++..+++  ++.++||.|+++.+.|.++...++..|.+++.++.    +   |+++|++.+++...       
T Consensus       100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------  172 (397)
T 3fsl_A          100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA-------  172 (397)
T ss_dssp             EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT-------
T ss_pred             EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC-------
Confidence            56778899988854  55689999999999999999999999999998887    4   78888888865322       


Q ss_pred             ccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--CccccccCCCCCceeEEEcccccccc
Q 011567          245 LRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RGLTEHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       245 ~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g~~~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                      ++++++++.+++++|.+.+   +++|+++|++||+++|+||+|+.+..+..+  ..+....+.  .+.+++++|+||++|
T Consensus       173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~  250 (397)
T 3fsl_A          173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA--GLPALVSNSFSKIFS  250 (397)
T ss_dssp             TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHT--TCCEEEEEECTTTTT
T ss_pred             CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhc--CCCEEEEeccccccc
Confidence            3688888889999999977   679999999999999999999887654211  111121122  234788899999998


Q ss_pred             CCC---ceee---ccHHHHHHHHhcCCc---eeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHh
Q 011567          320 TEG---GFCT---GSARVVDHQRLSSSG---YVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       320 ~~G---G~i~---~~~~~~~~~~~~~~~---~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      ..|   ||++   ++++.++.+......   ..++ +.++...+++.++++.       .+..++.+++++++.+++.+.
T Consensus       251 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  329 (397)
T 3fsl_A          251 LYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYS-SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKV  329 (397)
T ss_dssp             CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766   8875   355555533211101   1111 1233444444333331       122245788889999999999


Q ss_pred             hccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          384 LSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       384 L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      |+++.   ++.+..+..+.++++.+.        .     +.+..+++++||.+.++             -||++. .+|
T Consensus       330 L~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gi~v~~g-------------~Ris~~-~~~  382 (397)
T 3fsl_A          330 LSTEMPERNFDYLLNQRGMFSYTGLS--------A-----AQVDRLREEFGVYLIAS-------------GRMCVA-GLN  382 (397)
T ss_dssp             HHHHCTTSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHTTCEECCTT-------------CEEEGG-GCC
T ss_pred             HHhcCCCCCceeecCCceEEEecCCC--------H-----HHHHHHHHhCCEEECCC-------------CeEEEE-ecC
Confidence            98764   566554445555555441        1     12344567789999743             289885 457


Q ss_pred             HHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRI  474 (483)
Q Consensus       461 ~edi~~~~~~l~~~  474 (483)
                      +++|++++++|+++
T Consensus       383 ~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          383 TANVQRVAKAFAAV  396 (397)
T ss_dssp             TTTHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhh
Confidence            78899999999875

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=4.9e-25  Score=219.66  Aligned_cols=313  Identities=15%  Similarity=0.160  Sum_probs=210.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCc--EEEEcCCc
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD--LIVADEGV  202 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gd--iI~~~~~~  202 (483)
                      +|++.+++.+.+..         ..|+..+...++++++++++|.+..+++++|++|+..+++++.+++|  +|+++..+
T Consensus        28 ~p~v~~ai~~~~~~---------~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~   98 (359)
T 3pj0_A           28 LTEALQNIDDNLES---------DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLS   98 (359)
T ss_dssp             HHHHTTTSCTTCBC---------CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred             CHHHHHHHHhhccc---------CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            46666666552211         24566678899999999999999888889999999999999987776  47888888


Q ss_pred             hhHHHhH--h-hhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-CCccCh---HHHHHHH
Q 011567          203 HWGIQNG--L-YLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIAPL---DELIRLK  271 (483)
Q Consensus       203 h~s~~~g--~-~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G~i~~L---~~l~~l~  271 (483)
                      |......  + ...|.+++.++.+    |+++|++.    ..       ++++|+++++++++ |.+.|.   ++|+++|
T Consensus        99 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~----~~-------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~  167 (359)
T 3pj0_A           99 HLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSL----RE-------PVSSVLIELPQREIGGQLPAFEELEKISEYC  167 (359)
T ss_dssp             HHHHSSTTHHHHHHCCEEEECSCTTSCCCHHHHHTC----SS-------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred             eeeehhcchHHHhcCceEEecCCcCCCcCHHHHHhc----cC-------CceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence            8765432  2 4568888888754    66666654    12       36788888887665 788885   5559999


Q ss_pred             HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHHHhcCCceeecCCCcH
Q 011567          272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQRLSSSGYVFSASLPP  350 (483)
Q Consensus       272 ~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p  350 (483)
                      ++||+++|+||+|.++.....|....+. .   ...|+++.|++|++++ .||++++++++++.++.....+..+.....
T Consensus       168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~---~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~~~~  243 (359)
T 3pj0_A          168 HEQGISLHLDGARLWEITPFYQKSAEEI-C---ALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLY  243 (359)
T ss_dssp             HHHTCEEEEEETTCGGGHHHHTCCHHHH-H---TTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCH
T ss_pred             HHcCCEEEEECcchhcchhhhCCCHHHh-h---ccCCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcchhH
Confidence            9999999999998765432212211111 1   2347888899999974 457888999998877542111111111123


Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567          351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE  429 (483)
Q Consensus       351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~  429 (483)
                      ..++++..+++...   +..++..++.+++.+.|++++|+.+. .++.++++++.+..+      ......++.+.+. +
T Consensus       244 ~~~~a~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~-~  313 (359)
T 3pj0_A          244 PYILSADYYFEKRI---GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS------ADEIGAILTKIQD-E  313 (359)
T ss_dssp             HHHHHHHHHHHHHG---GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC------HHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc------cchhHHHHHHHHH-h
Confidence            33344445665442   24556788889999999998898875 456788888888532      1122345666554 4


Q ss_pred             CCEEEEeecccccccCCCCCceEEEccCC---CCHHHHHHHHHHHHHH
Q 011567          430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRI  474 (483)
Q Consensus       430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~---~t~edi~~~~~~l~~~  474 (483)
                      +||.+.+...+..+   ....+|+++...   .+.++++++++.|+++
T Consensus       314 ~GV~v~~g~~~~~~---~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          314 TGVGISGYLQEKSA---DVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             HCEECCSCCEEEET---TEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             cCcEecCCccccCC---CceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            59999877543210   012389887543   6789999988888765

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.93  E-value=3.7e-24  Score=211.47  Aligned_cols=303  Identities=13%  Similarity=0.093  Sum_probs=218.0

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---C--CCEEEecccHHHHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---T--PDSILYSYGLSTMF  183 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~--e~~i~~~sG~~a~~  183 (483)
                      ++++||.++.+ .+..+|.+.+++.+++.+.+..      .|+.. ...++++.++++++   .  ++.++.++|++++.
T Consensus        19 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~   90 (335)
T 1uu1_A           19 RDKTYLALNEN-PFPFPEDLVDEVFRRLNSDALR------IYYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY   90 (335)
T ss_dssp             CCSEEESSCCC-SSCCCHHHHHHHHHTCCGGGGG------SCCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH
T ss_pred             CcceECCCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH
Confidence            36899988743 2335799999999887432211      12221 25789999999998   3  34555677789999


Q ss_pred             hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      .+++++   ||.|+++ +.|..+...++..|.+++.++.+     |+++|        .       ++++|++..+++++
T Consensus        91 ~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l--------~-------~~~~v~l~~p~npt  151 (335)
T 1uu1_A           91 VMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--------G-------EGDVVFIPNPNNPT  151 (335)
T ss_dssp             HHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC--------C-------TTEEEEEESSCTTT
T ss_pred             HHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc--------C-------CCCEEEEeCCCCCC
Confidence            999988   7889999 99988888888889999888764     23333        1       25666655568889


Q ss_pred             CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567          259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ  335 (483)
Q Consensus       259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~  335 (483)
                      |.+.|.+++.++++.+| ++|+||+|+.+..+    ......+.  .+.+++++|+||++|..|   ||+++++++++.+
T Consensus       152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~----~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l  224 (335)
T 1uu1_A          152 GHVFEREEIERILKTGA-FVALDEAYYEFHGE----SYVDFLKK--YENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAY  224 (335)
T ss_dssp             CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC----CCGGGGGT--CSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCC-EEEEECcchhhcch----hHHHHhhh--CCCEEEEecchhhcCCcccCeEEEEeCHHHHHHH
Confidence            99999999999999989 99999999854211    22222222  334788999999998666   9999999998887


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +.....  |  +.++..++++.++++..+..++..++++++.+++.+.|+++ |+.+. ++.++++++.++.        
T Consensus       225 ~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------  290 (335)
T 1uu1_A          225 NRVRLP--F--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEK--------  290 (335)
T ss_dssp             HHHSCT--T--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCT--------
T ss_pred             HHhcCC--C--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCC--------
Confidence            665433  2  45777888887888753323457888889999999999886 77664 3467788777631        


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                       ....++.+.+++ +||.+.+.          ++.+|+++.   +++|+++++++|+++
T Consensus       291 -~~~~~~~~~l~~-~gi~v~~~----------~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          291 -EEKERLLEHLRT-KNVAVRSF----------REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             -HHHHHHHHHHHH-HTEEEEEE----------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHH-CCEEEEEC----------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence             123456776655 59999872          244999984   578899999998754

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=4.2e-24  Score=214.93  Aligned_cols=295  Identities=15%  Similarity=0.115  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHH-H-hHhhhcC--CeEEEec-------
Q 011567          154 DVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGI-Q-NGLYLSR--STVVYFK-------  221 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~-~-~g~~~s~--~~v~~~~-------  221 (483)
                      +...++++.+++++|.++.+++ ++|++|+..++..+ ++||.|++....|++. . ..+...|  .+++.++       
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~  113 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDT  113 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccc
Confidence            4567889999999998776666 68999999888765 5777666655544432 2 2223333  3444443       


Q ss_pred             -------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC
Q 011567          222 -------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR  291 (483)
Q Consensus       222 -------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~  291 (483)
                             ..|++++++.+++.         ++++|++..+.+++|.+.|   +++|+++|++||+++|+|++++ |... 
T Consensus       114 ~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~-  182 (379)
T 3ke3_A          114 EAPKPFAPVDIETAVAKIKED---------KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVW-  182 (379)
T ss_dssp             SSCCCEECCCHHHHHHHHHHH---------TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCC-
T ss_pred             cccCCCCCCCHHHHHHHHhhc---------CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcc-
Confidence                   35888898888542         1557778888888999999   9999999999999999999987 5211 


Q ss_pred             CCCccccccCCCCCceeEEEccccccccC-CC-ceeeccHHHHHHHHhc-CCce-------------------eecCCCc
Q 011567          292 SGRGLTEHCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSARVVDHQRLS-SSGY-------------------VFSASLP  349 (483)
Q Consensus       292 ~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~G-G~i~~~~~~~~~~~~~-~~~~-------------------~fs~~~~  349 (483)
                        . -.+.+     ++|++++|++|++++ .| |++++++++++.++.. ..++                   .|+.+.|
T Consensus       183 --~-~~~~~-----~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~  254 (379)
T 3ke3_A          183 --L-DMKEL-----GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMP  254 (379)
T ss_dssp             --C-CHHHH-----TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCC
T ss_pred             --c-ccccc-----CCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCC
Confidence              0 11222     348999999999964 33 7889999988877541 1121                   1233567


Q ss_pred             HHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADW  425 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~~i~~~  425 (483)
                      +..++++.++++.+++.  +++.++.+++.+++++.|+++ |+++..++  .++++.....+.     .+   . .... 
T Consensus       255 ~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-----~~---~-~~~~-  323 (379)
T 3ke3_A          255 TDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-----DD---M-HKGS-  323 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-----HH---H-HSSH-
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-----cc---h-HHHH-
Confidence            88888888999988653  578889999999999999987 88776443  255443332110     11   1 1233 


Q ss_pred             HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .|.++||.+.+...+.+........+|++++..+|++||++++++|+++++++.
T Consensus       324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            355679999877544321111124599999999999999999999999998765

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.93  E-value=2.4e-23  Score=212.56  Aligned_cols=324  Identities=17%  Similarity=0.195  Sum_probs=223.1

Q ss_pred             EeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC-hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc
Q 011567          113 NFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT-IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC  190 (483)
Q Consensus       113 d~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~-~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~  190 (483)
                      ||..+ +.++  .++.+.+++.+.++. +        .|+. .+...++++.+++++|.++++++++|++|+..+++++.
T Consensus        20 ~l~~~~p~~~--~p~~~~~a~~~~~~~-~--------~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~   88 (424)
T 2po3_A           20 PLLVGRPNRI--DRARLYERLDRALDS-Q--------WLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG   88 (424)
T ss_dssp             CEETTCCCCC--CHHHHHHHHHHHHHH-T--------CCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT
T ss_pred             cccccCCCCC--ChHHHHHHHHHHHhc-C--------CcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC
Confidence            45544 3333  347889999888875 2        2444 56788999999999999888888999999999999885


Q ss_pred             cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567          191 KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL  264 (483)
Q Consensus       191 ~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L  264 (483)
                       +||.|+++.+.|.++...+...|.+++.++.+      |+++|++.+++          ++++|++.+   ++|...++
T Consensus        89 -~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~tG~~~~l  154 (424)
T 2po3_A           89 -LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP----------RTSAVVGVH---LWGRPCAA  154 (424)
T ss_dssp             -CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT----------TEEEEEEEC---GGGCCCCH
T ss_pred             -CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc----------CCcEEEEEC---CCCCcCCH
Confidence             68999999999999999999999999888764      56666554432          256666543   46888999


Q ss_pred             HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhcC-
Q 011567          265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLSS-  339 (483)
Q Consensus       265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~~-  339 (483)
                      ++|.++|++||+++|+||+|+.|.. ..|+.    .+.-+   |++++|++  |+++ ..|||++++ +++++.++... 
T Consensus       155 ~~i~~la~~~~~~li~Dea~~~g~~-~~~~~----~~~~~---di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~  226 (424)
T 2po3_A          155 DQLRKVADEHGLRLYFDAAHALGCA-VDGRP----AGSLG---DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHN  226 (424)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCE-ETTEE----TTSSS---SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHB
T ss_pred             HHHHHHHHHcCCEEEEECccccCCe-ECCee----ccccc---CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999996543 22322    12112   68888988  8886 456899888 78877654321 


Q ss_pred             Cc----ee-----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC---C--CCEEEEEe
Q 011567          340 SG----YV-----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP---E--SPIVFLIL  405 (483)
Q Consensus       340 ~~----~~-----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~--~~i~~l~l  405 (483)
                      .+    +.     +...++++.+++++..++.++   +..++.+++.+++.+.|.+++++.+...+   .  ..++.+.+
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~  303 (424)
T 2po3_A          227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP---EVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEI  303 (424)
T ss_dssp             TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEE
T ss_pred             cCccccccccccCcCCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEE
Confidence            11    11     112356777777776665543   47788888999999999987788776421   1  14555666


Q ss_pred             cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCCCCc-------eEEEccCCCCHHHHHHHHH
Q 011567          406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRLPVG-------IRLFVSAAHSEADLVKACE  469 (483)
Q Consensus       406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~~~~-------lRi~~~~~~t~edi~~~~~  469 (483)
                      ++..     ......++.+. |.++||.+.+...+.+..         ...+..       ||++++..+|++|++++++
T Consensus       304 ~~~~-----~~~~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~  377 (424)
T 2po3_A          304 DEAT-----TGIHRDLVMEV-LKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVAD  377 (424)
T ss_dssp             CHHH-----HSSCHHHHHHH-HHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHH
T ss_pred             CCcc-----chhhHHHHHHH-HHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHH
Confidence            3200     00012345654 455799997632211110         001112       6676679999999999999


Q ss_pred             HHHHHHHHH
Q 011567          470 SLKRISAVV  478 (483)
Q Consensus       470 ~l~~~~~~~  478 (483)
                      +|++++++.
T Consensus       378 ~L~~~~~~~  386 (424)
T 2po3_A          378 LLRLCATRG  386 (424)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999988654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.93  E-value=1.6e-24  Score=227.34  Aligned_cols=342  Identities=11%  Similarity=0.051  Sum_probs=225.4

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-------CCEEEecccHHHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-------PDSILYSYGLSTM  182 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-------e~~i~~~sG~~a~  182 (483)
                      .++||+.+++ ++ .+|.+.+++.+++...+  ...+  ..|..++...+++.+.+.++.       ++.+++++|++++
T Consensus       104 ~~i~l~~g~~-~~-~~~~~v~a~~~~~~~~~--y~~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al  177 (533)
T 3f6t_A          104 DAVNYCHTEL-GL-NRDKVVAEWVNGAVANN--YPVP--DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI  177 (533)
T ss_dssp             HHHHHHHHTT-CC-CHHHHHHHHHHHHHTCS--CCSS--SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred             hheeccCCCC-Cc-CCcHHHHHHHHHHHhCC--CCCC--cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence            4677877654 44 46888888888886521  1111  234555666666666555233       3556667888999


Q ss_pred             Hhhhhh-----hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       183 ~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      ..++.+     +.++||.|+++.+.|.++..++...+.+++.++.+         |+++|++.+..          ++++
T Consensus       178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~----------~~k~  247 (533)
T 3f6t_A          178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP----------SIKA  247 (533)
T ss_dssp             HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT----------TEEE
T ss_pred             HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC----------CCeE
Confidence            999887     78999999999999999999999999888877653         67777766532          2667


Q ss_pred             EEEecccCCCCCccCh---HHHHHHHH-HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567          249 IVVEAVYQNSGQIAPL---DELIRLKE-KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~L---~~l~~l~~-k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--  322 (483)
                      |++..+++++|.+.|.   ++|+++|+ +||+++|+||+|+.+..+  +..+..   .. .+.+++++|+||++|..|  
T Consensus       248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~---~~-~~~~i~~~S~SK~~g~~G~R  321 (533)
T 3f6t_A          248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYS---VV-PYNTMLVYSYSKLFGCTGWR  321 (533)
T ss_dssp             EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHH---HS-GGGEEEEEESHHHHTCGGGC
T ss_pred             EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhh---cC-CCCEEEEecCcccCCCcccc
Confidence            7777888889999985   58888888 699999999999864432  222221   11 245789999999999777  


Q ss_pred             -ceeeccHH-----HHHHHH-------------------------------hcCCceeecCCCcHHHHHHHHHHHHHHh-
Q 011567          323 -GFCTGSAR-----VVDHQR-------------------------------LSSSGYVFSASLPPYLASAAITAIDVLE-  364 (483)
Q Consensus       323 -G~i~~~~~-----~~~~~~-------------------------------~~~~~~~fs~~~~p~~~aaa~~al~~l~-  364 (483)
                       ||++++++     +++.++                               .....+.+++..++..++++..++..+. 
T Consensus       322 iG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~  401 (533)
T 3f6t_A          322 LGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLT  401 (533)
T ss_dssp             EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhh
Confidence             99988766     433220                               1112223333334444444333344332 


Q ss_pred             ---------cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHH
Q 011567          365 ---------ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWAL  427 (483)
Q Consensus       365 ---------~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~--------~~~~~~i~~~~l  427 (483)
                               ...++++.++++.+.+.+.|. + ++.+..+..+.++++.+.........+        .....+++.+++
T Consensus       402 ~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll  479 (533)
T 3f6t_A          402 STNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLA  479 (533)
T ss_dssp             CBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHH
Confidence                     113567788888999999997 4 666555555666666653100000000        001235566677


Q ss_pred             HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ++.||.+.++..+..+    +..+|+++. .++++++++++++|+++++++..
T Consensus       480 ~~~GV~v~pg~~f~~~----~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          480 EKNGVVLVDGVGFGAK----PGELRVSQA-NLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             HHTTSSSCTTEEECSS----TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCEEEeCCcccCCC----CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence            7789999877654331    245999984 47899999999999999988654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.92  E-value=2.1e-23  Score=210.58  Aligned_cols=282  Identities=13%  Similarity=0.139  Sum_probs=202.5

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+++++|++++|.++++++++|++|+..+++++.++||.|++..+.|.++...    +...|.+++.++..|++++
T Consensus        58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  137 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKV  137 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence            467889999999999999999999999999999999999999999988888877665    4667899999999898888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+..+.   .    ++.   .+|
T Consensus       138 ~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~---~----~~~---~~d  197 (389)
T 3acz_A          138 KAAWKP----------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLK---P----LEL---GAD  197 (389)
T ss_dssp             HHTCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC---G----GGT---TCS
T ss_pred             HHhcCC----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccC---c----ccc---CCe
Confidence            877643          26899999999999999999999999999999999999998764321   1    222   348


Q ss_pred             EEEccccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      +++.|++|++++.    ||++++++ ++++.++....  .++..++|..+.++.++++.+   +...++..++.+.+.+.
T Consensus       198 i~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l---~~r~~~~~~~~~~l~~~  272 (389)
T 3acz_A          198 IALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK--DAGSLMAPMDAFLCARGMKTL---PIRMQIHMENGLKVAKF  272 (389)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred             EEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCccHH---HHHHHHHHHHHHHHHHH
Confidence            9999999999754    68998888 88887654321  134456788877777777644   23455666667766666


Q ss_pred             hccCC--------------Cceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee---------
Q 011567          384 LSDIH--------------GLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS---------  437 (483)
Q Consensus       384 L~~~~--------------~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~---------  437 (483)
                      |++.+              ++.+..   ...++++.+.++.        .   .+ ...++++.|+++...         
T Consensus       273 l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--------~---~~-~~~~l~~~~i~~~~~s~G~~~sl~  340 (389)
T 3acz_A          273 LEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--------F---EA-AKKLMEHLKVCTLAVSLGCVDTLI  340 (389)
T ss_dssp             HHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------H---HH-HHHHHTTCSSSEEBSCCCCSSCEE
T ss_pred             HHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--------H---HH-HHHHHHhCCCcEECcCCCCcccEe
Confidence            65542              222211   1246788888742        1   12 334566678877652         


Q ss_pred             cccccc-c-----------CCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567          438 KRSMLD-K-----------CRLPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       438 ~~~~~~-~-----------~~~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      ..+... +           ...+..||+++....+++.++.+.++|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al  386 (389)
T 3acz_A          341 EHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL  386 (389)
T ss_dssp             ECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             eCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence            111100 0           011245999998876666666555554

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.92  E-value=8.6e-24  Score=213.33  Aligned_cols=310  Identities=15%  Similarity=0.207  Sum_probs=217.8

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCccc-ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCc
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYG-TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGV  202 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g-~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~  202 (483)
                      .+++.+++.+.+...         .|+ ..+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++.+.
T Consensus        35 ~~~~~~a~~~~~~~~---------~~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~  105 (391)
T 3dr4_A           35 DGNERDYVLECMDTT---------WISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLT  105 (391)
T ss_dssp             CSSHHHHHHHHHHHT---------CCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSS
T ss_pred             CHHHHHHHHHHHHcC---------CccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCc
Confidence            378888888888762         122 45778999999999999999999999999999999999 8999999999999


Q ss_pred             hhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCc
Q 011567          203 HWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRF  276 (483)
Q Consensus       203 h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~  276 (483)
                      |.++..++...|.+++.++.+      |+++|++.+++          ++++|+++   +++|.+.|+++|+++|++||+
T Consensus       106 ~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~~~---n~tG~~~~~~~i~~l~~~~~~  172 (391)
T 3dr4_A          106 YIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP----------RTKAIMPV---HLYGQICDMDPILEVARRHNL  172 (391)
T ss_dssp             CTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT----------TEEEECCB---CGGGCCCCHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC----------CceEEEEE---CCCCChhhHHHHHHHHHHcCC
Confidence            999999999999999888765      67777665532          25666643   467999999999999999999


Q ss_pred             EEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhc---CCc----ee--
Q 011567          277 RVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLS---SSG----YV--  343 (483)
Q Consensus       277 ~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~---~~~----~~--  343 (483)
                      ++|+||+|+.|.... +.    ..+..+   |+.+.|++  |+++ +.||+++.+ +++.+.++..   +..    +.  
T Consensus       173 ~li~D~a~~~g~~~~-~~----~~~~~~---di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  244 (391)
T 3dr4_A          173 LVIEDAAEAVGATYR-GK----KSGSLG---DCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFP  244 (391)
T ss_dssp             EEEEECTTCTTCEET-TE----ETTSSS---SEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCS
T ss_pred             EEEEECcccccceEC-Ce----eecccC---CEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCccccc
Confidence            999999999765421 11    122212   56555654  9996 456777654 5566554321   111    11  


Q ss_pred             ---ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC--C-----CCCEEEEEecCCCCCch
Q 011567          344 ---FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN--P-----ESPIVFLILEKSTGSMK  413 (483)
Q Consensus       344 ---fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~-----~~~i~~l~l~~~~~~~~  413 (483)
                         +...++++.++++...++.+   ++..++.+++.+++++.|.++ ++.+...  .     ...++.+.+.+..+.  
T Consensus       245 ~~g~~~~~~~l~aa~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  318 (391)
T 3dr4_A          245 IVGFNYRMTNIQAAIGLAQLERV---DEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST--  318 (391)
T ss_dssp             SCCCBCBCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS--
T ss_pred             ccccccCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch--
Confidence               12346777777766665544   347788889999999999987 7776543  1     123456666432110  


Q ss_pred             hhHHHHHHHHHHHHHhCCEEEEeecccc-----ccc---CCC-------CCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          414 NDLQLLEDIADWALKEDGVFVVTSKRSM-----LDK---CRL-------PVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~-----~~~---~~~-------~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                       +   ..++.+.+ .++||.+++...+.     ...   ...       ...||++++..+|++||++++++|++++
T Consensus       319 -~---~~~l~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          319 -T---RDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             -C---HHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             -h---HHHHHHHH-HHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence             1   23566654 45699998664221     000   000       1239999999999999999999998753

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.92  E-value=6.5e-24  Score=215.62  Aligned_cols=290  Identities=13%  Similarity=0.125  Sum_probs=207.6

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...++|++||+++|.++++++++|++|+..++.++.++||.|+++...|.++...+    ...|.++..++.+|+++|
T Consensus        81 ~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~l  160 (415)
T 2fq6_A           81 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADI  160 (415)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGG
T ss_pred             CchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHH
Confidence            4678999999999999999999999999999999999999999999888888776443    456889999998999998


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCc
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK  306 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~  306 (483)
                      ++.++.          ++++|+++.++|++|.+.|+++|.++|++  ||+++|+|++|+.+...   ..+    .   ..
T Consensus       161 e~ai~~----------~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~---~p~----~---~g  220 (415)
T 2fq6_A          161 VKHLQP----------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL----D---FG  220 (415)
T ss_dssp             GGGCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG----G---GT
T ss_pred             HHhhcc----------CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC---Ccc----c---cC
Confidence            877643          27899999999999999999999999999  99999999999865322   111    1   23


Q ss_pred             eeEEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567          307 IDIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       307 ~Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      +|++++|++|.+|+.    ||++++++++++.++...  ..+++.++|..+..+..+++.+.   ...++..++...+.+
T Consensus       221 ~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~~~~~~~a~~~~~~l~~l~---~r~~~~~~n~~~l~~  295 (415)
T 2fq6_A          221 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQMVDADTAYITSRGLRTLG---VRLRQHHESSLKVAE  295 (415)
T ss_dssp             CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHH
Confidence            489999999999854    588888888777665432  12344567877776666666553   356777788888888


Q ss_pred             hhccCCCce-e-ec---------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc----
Q 011567          383 GLSDIHGLS-I-AS---------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM----  441 (483)
Q Consensus       383 ~L~~~~~~~-i-~~---------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~----  441 (483)
                      .|++.+.+. + .+               ...++++.+.++...     +......+.+. ++-.++.++.+...+    
T Consensus       296 ~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~-l~~~~~a~s~G~~~s~~~~  369 (415)
T 2fq6_A          296 WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDN-FSLFSMAYSWGGYESLILA  369 (415)
T ss_dssp             HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTT-CSSCEECSCCCSSSCEEEE
T ss_pred             HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHh-CCcCeEeccCCCCceeEEe
Confidence            887754332 1 10               124778999985310     01223344442 222233333221100    


Q ss_pred             --------cc----cCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          442 --------LD----KCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       442 --------~~----~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                              +.    ....+..||+++....++++|+.+.++|++
T Consensus       370 ~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          370 NQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             ECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             cCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence                    00    011124599999999999999999888874

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=1.4e-23  Score=210.08  Aligned_cols=303  Identities=18%  Similarity=0.206  Sum_probs=214.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      |++.+++.+.+...         .|+..+...++++++++++|.++++++++|++|+..+++++ .++||.|+++...|.
T Consensus        16 ~~v~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~   86 (367)
T 3nyt_A           16 DKIDAGIQRVLRHG---------QYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYV   86 (367)
T ss_dssp             HHHHHHHHHHHHHC---------CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred             HHHHHHHHHHHhcC---------CccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccH
Confidence            45556666666542         23345678999999999999999999999999999999998 899999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++..++...|.+++.++.+      |+++|++.+++          ++++|+.+   +++|...|+++|.++|++||+++
T Consensus        87 ~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~---~~~G~~~~~~~i~~la~~~~~~l  153 (367)
T 3nyt_A           87 ATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP----------RTKAIIPV---SLYGQCADFDAINAIASKYGIPV  153 (367)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT----------TEEEECCB---CGGGCCCCHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc----------CCcEEEee---CCccChhhHHHHHHHHHHcCCEE
Confidence            9999999999999888754      67777776632          26677743   45689999999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEccc--cccccCC--Cceeec-cHHHHHHHHhcC-Cce---------e
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALATE--GGFCTG-SARVVDHQRLSS-SGY---------V  343 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~~--GG~i~~-~~~~~~~~~~~~-~~~---------~  343 (483)
                      |+||+|++|... .|+.    .+...   |+++.||  +|++|+.  ||++++ ++++.+.++... .+.         .
T Consensus       154 i~D~a~~~g~~~-~~~~----~~~~~---di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g  225 (367)
T 3nyt_A          154 IEDAAQSFGASY-KGKR----SCNLS---TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVG  225 (367)
T ss_dssp             EEECTTTTTCEE-TTEE----TTSSS---SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCC
T ss_pred             EEECccccCCeE-CCee----ccCCC---CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccC
Confidence            999999976542 1221    22211   7888887  8999863  688776 567776654321 111         1


Q ss_pred             ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC-----CCEEEEEecCCCCCchhhHHH
Q 011567          344 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-----SPIVFLILEKSTGSMKNDLQL  418 (483)
Q Consensus       344 fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-----~~i~~l~l~~~~~~~~~~~~~  418 (483)
                      ++..++++.++++.+.++.++   +..++.+++.+++++.|+++ ++.+...+.     ..++.+.+.        +   
T Consensus       226 ~~~~~~~~~aa~~~~~l~~~~---~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~---  290 (367)
T 3nyt_A          226 VNSRLDTLQAAILLPKLEIFE---EEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--------N---  290 (367)
T ss_dssp             CBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--------S---
T ss_pred             cCCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--------C---
Confidence            344578999988888887663   46777888889999999886 444332211     123444442        1   


Q ss_pred             HHHHHHHHHHhCCEEEEeecccccc---cC-----CCC-------CceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          419 LEDIADWALKEDGVFVVTSKRSMLD---KC-----RLP-------VGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       419 ~~~i~~~~l~~~Gv~v~~~~~~~~~---~~-----~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ..++.+. |+++||.++......+.   ..     ..|       ..||++++..+|++|+++++++|++.
T Consensus       291 ~~~l~~~-L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          291 RESVQAS-LKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHHH-HHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHH-HHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            2245555 44559988765321110   00     011       13999999999999999999999764

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3e-23  Score=210.85  Aligned_cols=290  Identities=13%  Similarity=0.118  Sum_probs=204.9

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+|+++++++.|.++++++++|++|+..+++++.++||.|++..+.|.++...+.    ..|.+++.++.+|+++|
T Consensus        80 ~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l  159 (414)
T 3ndn_A           80 NPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQW  159 (414)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred             ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHH
Confidence            46789999999999999999999999999999999999999999999888888766554    37899999999999999


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          ++++|++|++++++|.+.|+++|+++|++||+++|+||+|+.|.+..   .+  .+     .+|
T Consensus       160 ~~ai~~----------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~---~~--~~-----g~d  219 (414)
T 3ndn_A          160 ERALSV----------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ---GF--PL-----GVD  219 (414)
T ss_dssp             HHHTSS----------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---CG--GG-----TCS
T ss_pred             HHhcCC----------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC---ch--hc-----CCC
Confidence            887743          26788999999999999999999999999999999999998654321   11  22     248


Q ss_pred             EEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      +++.|++|++|+.    ||+++++++.+. .++...  ..++..++|..++++...++.+   ....++..++++.+.+.
T Consensus       220 iv~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l---~~r~~~~~~~a~~l~~~  294 (414)
T 3ndn_A          220 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM--RHTGPAMSAFNAWVLLKGLETL---AIRVQHSNASAQRIAEF  294 (414)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH--HHHCCCCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHH
T ss_pred             eEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            9999999999753    589988887665 443221  1223456788777766666544   34677788888999999


Q ss_pred             hccCCCceeecC-----------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567          384 LSDIHGLSIASN-----------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML----  442 (483)
Q Consensus       384 L~~~~~~~i~~~-----------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~----  442 (483)
                      |++.+++.....                 ..+.++.+.++...   ........++.+. ++..++.+..+...++    
T Consensus       295 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~---~~~~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~p  370 (414)
T 3ndn_A          295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPE---DVAKQRAFEVLDK-MRLIDISNNLGDAKSLVTHP  370 (414)
T ss_dssp             HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCG---GGHHHHHHHHHHH-CSSSEECSCCSCSSCEEECG
T ss_pred             HhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCc---cccHHHHHHHHHh-CccceEcCCCCCCCceeeCc
Confidence            987766532211                 14678999985310   0002334456654 3334554443332211    


Q ss_pred             ---c-----------cCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          443 ---D-----------KCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       443 ---~-----------~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                         .           ....+..||+++..    |+++.+++.|++++
T Consensus       371 ~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          371 ATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             GGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence               0           01113349999976    55555555565554

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.92  E-value=4.8e-23  Score=207.86  Aligned_cols=308  Identities=16%  Similarity=0.157  Sum_probs=217.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-------ccCCcEE
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-------CKKGDLI  196 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-------~~~gdiI  196 (483)
                      -+|++.+++.+++++.         .++..+...++++.+++++|.++++++++|++|+..+++++       .++||.|
T Consensus        13 ~~~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~V   83 (390)
T 3b8x_A           13 WDDLEYKAIQSVLDSK---------MFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEI   83 (390)
T ss_dssp             CCHHHHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEE
T ss_pred             CCHHHHHHHHHHHHcC---------CCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEE
Confidence            3688999999998862         23345778999999999999999999999999999999988       7889999


Q ss_pred             EEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHH
Q 011567          197 VADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL  270 (483)
Q Consensus       197 ~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l  270 (483)
                      +++...|.++..++...|.+++.++.+      |+++|++.+++          ++++|++.+   +.|...|+++|.++
T Consensus        84 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~~g~~~~~~~i~~l  150 (390)
T 3b8x_A           84 IVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD----------STKAILTVN---LLGNPNNFDEINKI  150 (390)
T ss_dssp             EEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT----------TEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc----------CCeEEEEEC---CccChhhHHHHHHH
Confidence            999999999999999999999888765      67777776642          245655543   34778899999999


Q ss_pred             HHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc--ccccc-CCCceeeccH-HHHHHHHh---cC----
Q 011567          271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALA-TEGGFCTGSA-RVVDHQRL---SS----  339 (483)
Q Consensus       271 ~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg-~~GG~i~~~~-~~~~~~~~---~~----  339 (483)
                      |++||+++|+||+|+.|... .+    ..+|..+   |+.+.|+  +|.++ +.||++++++ ++.+.++.   .+    
T Consensus       151 ~~~~~~~li~D~a~~~g~~~-~~----~~~g~~~---~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~  222 (390)
T 3b8x_A          151 IGGRDIILLEDNCESMGATF-NN----KCAGTFG---LMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN  222 (390)
T ss_dssp             HTTSCCEEEEECTTCTTCEE-TT----EETTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred             HHHcCCEEEEECcCcccCEE-CC----ccccccc---ceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence            99999999999999977543 22    2345433   5554343  56664 4578988775 56554332   11    


Q ss_pred             -----------------Ccee-----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-
Q 011567          340 -----------------SGYV-----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-  396 (483)
Q Consensus       340 -----------------~~~~-----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-  396 (483)
                                       ..+.     +...++++.++++++.++.++   +..++.+++.+++.+.|++++++.+...+ 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  299 (390)
T 3b8x_A          223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP---RFISVRRKNAEYFLDKFKDHPYLDVQQETG  299 (390)
T ss_dssp             SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCSSEEECCCCS
T ss_pred             ccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCcccCCCCC
Confidence                             0111     222368888888888887664   47888899999999999988788775432 


Q ss_pred             CCC--EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---c-ccC---------CCC-------CceEEE
Q 011567          397 ESP--IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---L-DKC---------RLP-------VGIRLF  454 (483)
Q Consensus       397 ~~~--i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---~-~~~---------~~~-------~~lRi~  454 (483)
                      .++  .+.+.+....+.   +   ..++.+. |.++||.++....+.   . +..         ..|       ..||++
T Consensus       300 ~~~~~~~~i~~~~~~~~---~---~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  372 (390)
T 3b8x_A          300 ESSWFGFSFIIKKDSGV---I---RKQLVEN-LNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVG  372 (390)
T ss_dssp             BCCCCEEEEEECTTSCC---C---HHHHHHH-HHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEE
T ss_pred             CcccEEEEEEecCcCcc---c---HHHHHHH-HHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEee
Confidence            233  355555421110   1   2245665 455799988632211   1 100         011       139999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESL  471 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l  471 (483)
                      ++..+|++|+++++++|
T Consensus       373 ~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          373 NHQIELFDEIDYLREVL  389 (390)
T ss_dssp             CCSSCCHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            99999999999999876

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=9.2e-24  Score=213.43  Aligned_cols=286  Identities=10%  Similarity=0.064  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+++++||+++|.++.+++++|++|+..+++ +.++||.|++....|.++..    .++..|.+++.++.+| ++|+
T Consensus        55 ~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~  132 (393)
T 1n8p_A           55 PNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLP  132 (393)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHH
T ss_pred             hhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHH
Confidence            5678999999999999899999999999999999 88999988888888876554    3456688888888877 7777


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc----CcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY----RFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~----~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      +.++.          ++++|+++++++++|.+.|+++|.++|++|    |+++|+||+|+.+.+.   . ..+ +     
T Consensus       133 ~~i~~----------~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~---~-~~~-~-----  192 (393)
T 1n8p_A          133 QLIKE----------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---N-PLN-F-----  192 (393)
T ss_dssp             HHSCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---C-GGG-G-----
T ss_pred             Hhccc----------CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC---C-HHH-c-----
Confidence            66532          378999999999999999999999999999    9999999999877543   1 111 2     


Q ss_pred             ceeEEEccccccccCCC----ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEG----GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~G----G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      ++|+++.|++|.+|+.|    |+++++ +++++.++.....  ++..++|..++++..+++.+   +...++..++.+.+
T Consensus       193 ~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l  267 (393)
T 1n8p_A          193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA--IGAIPSPFDAWLTHRGLKTL---HLRVRQAALSANKI  267 (393)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHH
Confidence            24899999999999654    998874 7888776543211  33445677777666666544   34567777788888


Q ss_pred             HHhhccCCC-ce-e-ec---------------CC-C-CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567          381 RTGLSDIHG-LS-I-AS---------------NP-E-SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS  440 (483)
Q Consensus       381 ~~~L~~~~~-~~-i-~~---------------~~-~-~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~  440 (483)
                      .+.|.+.+. +. + .+               .. . ++++.+.++..       ......+.+. ++..++.++.+...
T Consensus       268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-------~~~~~~~l~~-l~~~~~~~s~G~~~  339 (393)
T 1n8p_A          268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-------AEAASKFASS-TRLFTLAESLGGIE  339 (393)
T ss_dssp             HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCCSS
T ss_pred             HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-------HHHHHHHHhh-CCcceECCCCCCCc
Confidence            888876543 22 1 10               01 3 67889888521       1223344443 33234443322111


Q ss_pred             c-------ccc-----------CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          441 M-------LDK-----------CRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       441 ~-------~~~-----------~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +       ..+           ...+..||+++....++++++.+.++|+++
T Consensus       340 s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          340 SLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             CEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            1       011           011245999999999999999999988765

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=2.9e-24  Score=217.47  Aligned_cols=322  Identities=11%  Similarity=0.040  Sum_probs=207.7

Q ss_pred             eEEEeecCCCCCCCCChH----HHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEE--e
Q 011567          110 EVVNFASANYLGLIGHEK----LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSIL--Y  175 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~----i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~--~  175 (483)
                      .+|||+.+.|+.+..+|.    +.+++.+.+...+.  .+.....|    ..++++.++++++        .++.++  +
T Consensus        29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t  102 (401)
T 7aat_A           29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMD--KEYLPIAG----LADFTRASAELALGENSEAFKSGRYVTVQG  102 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCC--CCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CceeeeeeeEECCCCCEechHHHHHHHHHhcccccc--cCCCCCCC----CHHHHHHHHHHhcCCCccccccCceEEEec
Confidence            379999998866655554    55655555543222  11111233    3456666666653        345554  6


Q ss_pred             cccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCc
Q 011567          176 SYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       176 ~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      ++|++++..++.++.   ++||.|+++.++|..+...++..|.+++.++.+       |++++++.+++...       +
T Consensus       103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~  175 (401)
T 7aat_A          103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE-------K  175 (401)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCT-------T
T ss_pred             CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCC-------C
Confidence            888899998876654   899999999999999999999999998887753       56777777765322       3


Q ss_pred             cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--Cc-cccccCCCCCceeEEEcccccccc
Q 011567          246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RG-LTEHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g-~~~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                      +++|++..++|++|.+.+   +++|+++|++||+++|+||+|..+.++...  .. +....+.  .+..++++|+||++|
T Consensus       176 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~~  253 (401)
T 7aat_A          176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ--GIDVVLSQSYAKNMG  253 (401)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT--TCCCEEEEECTTTSC
T ss_pred             cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhc--CCcEEEEecCCcccc
Confidence            688899999999998877   789999999999999999999765443210  00 1111122  233688899999999


Q ss_pred             CCC---ceeec---cHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHH
Q 011567          320 TEG---GFCTG---SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       320 ~~G---G~i~~---~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~  382 (483)
                      ..|   ||++.   +++    +.+.++.....+  ..+.+...++++...++.       .+...+.+++++++.+++.+
T Consensus       254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  331 (401)
T 7aat_A          254 LYGERAGAFTVICRDAEEAKRVESQLKILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS  331 (401)
T ss_dssp             CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777   88654   555    334333221111  112233433333333321       12224567888899999999


Q ss_pred             hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567          383 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       383 ~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .|+++.   ++.+..+..+.+.++.+.         .    +.+..+++++||.+.             +++|++++. +
T Consensus       332 ~L~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~ll~~~gi~v~-------------~~~Ris~~~-~  384 (401)
T 7aat_A          332 NLKKEGSSHNWQHITDQIGMFCFTGLK---------P----EQVERLTKEFSIYMT-------------KDGRISVAG-V  384 (401)
T ss_dssp             HHHHTTCCSCCHHHHHCCSSEEECCCC---------H----HHHHHHHHHHCEECC-------------TTCEEEGGG-C
T ss_pred             HHHhcCCCCCCceecCCcceEEecCCC---------H----HHHHHHHHhCCEecc-------------CCCeEEecc-C
Confidence            998761   254443434445444331         1    233456666799885             338999976 4


Q ss_pred             CHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRIS  475 (483)
Q Consensus       460 t~edi~~~~~~l~~~~  475 (483)
                      |+++|++++++|++++
T Consensus       385 ~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          385 ASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             CTTTHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHh
Confidence            5566999999999875

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.92  E-value=4.9e-23  Score=208.21  Aligned_cols=322  Identities=11%  Similarity=0.164  Sum_probs=222.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567          125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH  203 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h  203 (483)
                      .|++.+++.+.++. +.  ..     ...+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++.+.|
T Consensus        11 ~~~v~~a~~~~~~~-~~--~~-----~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~   82 (394)
T 1o69_A           11 GGNELKYIEEVFKS-NY--IA-----PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTF   82 (394)
T ss_dssp             -CCHHHHHHHHHHH-TT--TS-----CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred             CHHHHHHHHHHHHc-CC--cc-----CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCcc
Confidence            47888898888875 11  00     012568899999999999988888999999999999999 89999999999999


Q ss_pred             hHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          204 WGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       204 ~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      .++...+...|.+++.++.+     |+++|++.+++...       ++++|++++   ++|...++++|.++|++||+++
T Consensus        83 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~-------~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~l  152 (394)
T 1o69_A           83 IASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEK-------KPKALILTH---LYGNAAKMDEIVEICKENDIVL  152 (394)
T ss_dssp             GGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSS-------CCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccC-------CceEEEEEC---CCCChhhHHHHHHHHHHcCCEE
Confidence            99999999899998888753     78888888764211       245666665   4688999999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HHHHHHHHhcCCce-----ee-------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSSSGY-----VF-------  344 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~~~~~~~~~~~~~-----~f-------  344 (483)
                      |+||+|+.|... .|..... +    .++|+.+.|.+|+++ ..+||++++ +++++.++......     .|       
T Consensus       153 i~Dea~~~g~~~-~~~~~~~-~----~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~  226 (394)
T 1o69_A          153 IEDAAEALGSFY-KNKALGT-F----GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY  226 (394)
T ss_dssp             EEECTTCTTCEE-TTEETTS-S----SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred             EEECcCccccee-CCccccc-c----cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCc
Confidence            999999965432 2222111 1    246888777799997 446899885 78887765432111     01       


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-----CCCEEEEEecCCC------CC--
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-----ESPIVFLILEKST------GS--  411 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-----~~~i~~l~l~~~~------~~--  411 (483)
                      ...++++.+++++..++.++   +.+++++++.+++.+.|.++  +.+.+..     ...++.+.++...      +.  
T Consensus       227 ~~~~~~~~aa~~l~~l~~l~---~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  301 (394)
T 1o69_A          227 NYRLSNVLGAIGVAQMEVLE---QRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDI  301 (394)
T ss_dssp             BCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred             ccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccc
Confidence            11257777777766665553   47788999999999999875  5544331     1125677764210      00  


Q ss_pred             ----c-hhhHHHHHHHHHHHHHhCCEEEEeeccc-----ccccC---CCC-------CceEEEccCCCCHHHHHHHHHHH
Q 011567          412 ----M-KNDLQLLEDIADWALKEDGVFVVTSKRS-----MLDKC---RLP-------VGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       412 ----~-~~~~~~~~~i~~~~l~~~Gv~v~~~~~~-----~~~~~---~~~-------~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                          . ........++.+.+ .++||.+++...+     .+...   ..|       .++|+..+..+|++|+++++++|
T Consensus       302 ~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l  380 (394)
T 1o69_A          302 NISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLI  380 (394)
T ss_dssp             ECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cccccccccccCHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHH
Confidence                0 00001234566654 4569999876432     11110   001       24777778889999999999999


Q ss_pred             HHHHH
Q 011567          472 KRISA  476 (483)
Q Consensus       472 ~~~~~  476 (483)
                      ++++.
T Consensus       381 ~~~~~  385 (394)
T 1o69_A          381 LKSIK  385 (394)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=5.6e-24  Score=213.63  Aligned_cols=326  Identities=14%  Similarity=0.160  Sum_probs=211.3

Q ss_pred             Ce-eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHH
Q 011567          108 GK-EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMF  183 (483)
Q Consensus       108 G~-~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~  183 (483)
                      |+ +++|++.... ....++++.+++.    .++          +....+.++++.+++++|.   ++++++++|++|+.
T Consensus        26 g~~~v~~~~~~~~-~~~~~~~v~~a~~----~~~----------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~   90 (374)
T 2aeu_A           26 GRDALYDLSGLSG-GFLIDEKDKALLN----TYI----------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAIL   90 (374)
T ss_dssp             CGGGCEECSSCCC-CCCCCHHHHHHHT----STT----------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred             CccceeeecccCC-CCCCCHHHHHHHH----Hhc----------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHH
Confidence            55 5778776431 1123466666653    221          1234567888888899998   67788899999999


Q ss_pred             hhhhhhccCCcEEEEcCCc---hhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEE-EEEecccCCCC
Q 011567          184 SAIPCFCKKGDLIVADEGV---HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY-IVVEAVYQNSG  259 (483)
Q Consensus       184 ~ai~~~~~~gdiI~~~~~~---h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~-iv~e~v~~~~G  259 (483)
                      .+++++  +||.|++..+.   |.+....+...|.+++.+  .|+++|++. .   .       ++++ |+++++++++|
T Consensus        91 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--~d~~~l~~~-~---~-------~~~~~v~~~~p~nptG  155 (374)
T 2aeu_A           91 ATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--DKVGEILNK-I---D-------KDTLVIITGSTMDLKV  155 (374)
T ss_dssp             HHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--SCHHHHHTT-C---C-------TTEEEEEECBCTTSCB
T ss_pred             HHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--CCHHHHHhc-C---C-------CccEEEEEccCCCCCC
Confidence            999988  89988888774   344445677788888887  688887665 1   1       2677 88899999999


Q ss_pred             -CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHHh
Q 011567          260 -QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRL  337 (483)
Q Consensus       260 -~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~  337 (483)
                       ...++++|.++|++||+++|+||+|+.+..+......  ....   .+|++++|++|+++ ..+||+++++++++.++.
T Consensus       156 ~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~---~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~  230 (374)
T 2aeu_A          156 IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP--ALKL---GADLVVTSTDKLMEGPRGGLLAGKKELVDKIYI  230 (374)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC--HHHH---TCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHcCCEEEEECCcccccccccccCC--cccc---CCcEEEecCcccccCcceEEEEECHHHHHHHHH
Confidence             8888999999999999999999999765321111100  1111   23899999999996 567999999999888765


Q ss_pred             cCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH--------HHHHHhhccC---CCceeecCCCCCEEEEEec
Q 011567          338 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT--------AILRTGLSDI---HGLSIASNPESPIVFLILE  406 (483)
Q Consensus       338 ~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~--------~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~  406 (483)
                      ..  ..++.+.++..++++.++++.+..  +..++..++.        +.+.+.|..+   .|+.+...+.+.++ ....
T Consensus       231 ~~--~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~-~~~~  305 (374)
T 2aeu_A          231 EG--TKFGLEAQPPLLAGIYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI-KRVY  305 (374)
T ss_dssp             HH--HTTTCBCCHHHHHHHHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE-EEEE
T ss_pred             hh--ccccCCCCHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE-Eeec
Confidence            32  123345688888888888886532  2334444444        4444445443   24454333333333 3321


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHHHHHHHHh
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ..   ...+.....+++.++++++||.+.++....  .  .+..+||+++. ..++++++++.++++++++++.+
T Consensus       306 ~~---~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~--~--~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~  373 (374)
T 2aeu_A          306 KD---DTINIKKLIEIGFNLLKNYGIITITVAGMP--G--ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK  373 (374)
T ss_dssp             SS---HHHHHHHHHHHHHHHHHHHCEECSTTSSSC--S--SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred             cc---ccccccchHHHHHHHHHhCCEEEecCCCCC--C--CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            10   000111122356566766799998753211  0  12349999864 33444689999999999888753

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.92  E-value=5.1e-24  Score=219.11  Aligned_cols=330  Identities=11%  Similarity=0.065  Sum_probs=219.3

Q ss_pred             CCee-EEEeecCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCcccChHHHHHHHHHHHhhh-CCC-------CEE
Q 011567          107 SGKE-VVNFASANYLGLIGHEKLLESCTSALEKYG----VGSCGPRGFYGTIDVHLDCEARIAKFL-GTP-------DSI  173 (483)
Q Consensus       107 ~G~~-~id~~s~~~lG~~~~p~i~~a~~~~l~~~g----~g~~~~~~~~g~~~~~~~l~~~La~~~-g~e-------~~i  173 (483)
                      ++++ .|||+.+.|+.+.+++.+.+++.+++++..    .+..+    |....-..++++.+++++ |.+       +.+
T Consensus        46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~----Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~  121 (448)
T 3meb_A           46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKE----YPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIA  121 (448)
T ss_dssp             CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS----CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred             CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCC----CCCCcchHHHHHHHHHHhcCCCccccCcCcEE
Confidence            4443 699999999887677777777777743321    11111    222222467788888876 653       566


Q ss_pred             E--ecccHHHHHh--hhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecC---C-----CHHHHHHHHHHhhh
Q 011567          174 L--YSYGLSTMFS--AIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKH---N-----DMDSLRNTLERVTA  237 (483)
Q Consensus       174 ~--~~sG~~a~~~--ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~---~-----d~~~Le~~l~~~~~  237 (483)
                      +  +++|++|+..  .+.++..+||.|+++.+.|..+...+.    ..|.+++.+++   +     |+++|++.+++...
T Consensus       122 ~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~  201 (448)
T 3meb_A          122 SCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPE  201 (448)
T ss_dssp             EEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCT
T ss_pred             EEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCC
Confidence            6  7888899876  456677899999999999999998888    88988888776   2     67777777764322


Q ss_pred             hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--Ccccccc-CCCCCceeEEE
Q 011567          238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RGLTEHC-GVPVDKIDIVT  311 (483)
Q Consensus       238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g~~~~~-~v~~~~~Di~~  311 (483)
                             .++++++...+|++|.+.+   +++|+++|++||+++|+||+|+.+..+...  ......+ +.  ....+++
T Consensus       202 -------~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~  272 (448)
T 3meb_A          202 -------KSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDA--GVEVLVA  272 (448)
T ss_dssp             -------TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHT--TCCEEEE
T ss_pred             -------CcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhc--CCcEEEE
Confidence                   3678888888999999988   667999999999999999999865443200  0111111 11  1225778


Q ss_pred             ccccccccCCC---cee--ec---------cH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------hcC
Q 011567          312 AAMGHALATEG---GFC--TG---------SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EEN  366 (483)
Q Consensus       312 ~s~~K~lg~~G---G~i--~~---------~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~  366 (483)
                      +|+||++|..|   ||+  ++         ++    ++++.++.... ..++ +.|...+.++.++++..       +..
T Consensus       273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~  350 (448)
T 3meb_A          273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-KTWS-MSAIHGAYIVQVIVHDKRLLQMFYDNV  350 (448)
T ss_dssp             EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-TTTS-SCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-cccC-CccHHHHHHHHHHhcChHHHHHHHHHH
Confidence            99999999777   886  44         45    55555443211 1111 23455555555554321       122


Q ss_pred             cHHHHHHHHHHHHHHHhhccC--CC------ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567          367 PDLITKLKKNTAILRTGLSDI--HG------LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK  438 (483)
Q Consensus       367 ~~~~~~l~~~~~~l~~~L~~~--~~------~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~  438 (483)
                      .+++++++++++++.+.|+++  ++      +....+..+.+.++.+.             .+++..++++.||++.++ 
T Consensus       351 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gV~v~~G-  416 (448)
T 3meb_A          351 KEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-------------PEHVDYLKEKWSIYLVKA-  416 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEEECSG-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-------------HHHHHHHHHhCCEEEeCC-
Confidence            457788888999999999876  34      44333334444444331             134555666779999753 


Q ss_pred             ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                                 +.||++. .+|+++|++++++|++++++
T Consensus       417 -----------~gRis~a-~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          417 -----------GGRMSMC-GLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             -----------GGEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred             -----------CcEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence                       2499985 45778899999999999874

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=1.6e-23  Score=214.23  Aligned_cols=339  Identities=14%  Similarity=0.118  Sum_probs=222.2

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc--cChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY--GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~--g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~  182 (483)
                      +|..|+|++++.   . .+|.+.+++.+++... .+...+...+  +..+...+++++|++++|.+  +.++.++|++++
T Consensus        17 ~~~~~Ld~~~~~---~-~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~   91 (432)
T 3a9z_A           17 NRKVYMDYNATT---P-LEPEVIQAVTEAMKEA-WGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESN   91 (432)
T ss_dssp             -CCEECBTTTCC---C-CCHHHHHHHHHHHHHC-CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred             CCcEEeeCCccC---C-CCHHHHHHHHHHHHHh-cCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHH
Confidence            456778877654   3 6799999999998762 1111111111  22346689999999999974  455567778999


Q ss_pred             Hhhhhhhc--------cCCc-------------EEEEcCCchhHHHhHhh----hcCCeEEEecCC------CHHHHHHH
Q 011567          183 FSAIPCFC--------KKGD-------------LIVADEGVHWGIQNGLY----LSRSTVVYFKHN------DMDSLRNT  231 (483)
Q Consensus       183 ~~ai~~~~--------~~gd-------------iI~~~~~~h~s~~~g~~----~s~~~v~~~~~~------d~~~Le~~  231 (483)
                      ..++.++.        ++||             .|+++...|.++..++.    ..|.+++.++.+      |+++|++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~  171 (432)
T 3a9z_A           92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAA  171 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHT
T ss_pred             HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHh
Confidence            99988875        4674             66677777777765543    357888887753      56666655


Q ss_pred             HHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC----------cEEEEeCccccccccCCCCccccccC
Q 011567          232 LERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR----------FRVFLDESNSFGVLGRSGRGLTEHCG  301 (483)
Q Consensus       232 l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~----------~~li~DEa~s~g~lg~~G~g~~~~~~  301 (483)
                      +++          ++++|+++++++++|.+.|+++|.++|++|+          +++|+||+|+.|...   ..+   ..
T Consensus       172 i~~----------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~---~~~---~~  235 (432)
T 3a9z_A          172 VRP----------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR---VDV---ED  235 (432)
T ss_dssp             CCT----------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC---CCH---HH
T ss_pred             ccC----------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc---cCh---hh
Confidence            432          2688999999999999999999999999999          999999999875321   111   11


Q ss_pred             CCCCceeEEEccccccccCCCceeeccHHH-HHHHHhcCCc-----eeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHH
Q 011567          302 VPVDKIDIVTAAMGHALATEGGFCTGSARV-VDHQRLSSSG-----YVFSASLPPYLASAAITAIDVLEE-NPDLITKLK  374 (483)
Q Consensus       302 v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~-~~~~~~~~~~-----~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~  374 (483)
                      .   .+|+++.|++|++|+..||++++++. .+.++....+     .....+.++..++++.++++.+++ .+++.++++
T Consensus       236 ~---~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~  312 (432)
T 3a9z_A          236 L---GVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR  312 (432)
T ss_dssp             H---CCSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---CCCEEEEehhHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            1   24888999999999778999888765 2222211000     011224567777777778887653 246788889


Q ss_pred             HHHHHHHHhhccCCCceee--cC-----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc----
Q 011567          375 KNTAILRTGLSDIHGLSIA--SN-----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD----  443 (483)
Q Consensus       375 ~~~~~l~~~L~~~~~~~i~--~~-----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~----  443 (483)
                      ++++++.+.|++++|+.+.  .+     ....++.+.+.....    +   ..++.+. +  .|+.+..+......    
T Consensus       313 ~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~-l--~~i~~~~G~~~~~~~~~~  382 (432)
T 3a9z_A          313 DIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL----R---GYMVLAQ-C--QTLLASVGASCHSDHEDR  382 (432)
T ss_dssp             HHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC----C---HHHHHHH-C--SSEECBSSCGGGGGGTTS
T ss_pred             HHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC----c---HHHHHHH-h--cCeEEeccccccCCCCCC
Confidence            9999999999875555442  22     123367777753110    1   1123332 2  26666543211100    


Q ss_pred             ------cCCC-----CCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          444 ------KCRL-----PVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       444 ------~~~~-----~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                            ....     +..||++++..+|++|+++++++|+++++++.
T Consensus       383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                  0011     14599999988899999999999999987753

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.92  E-value=3.3e-23  Score=211.32  Aligned_cols=231  Identities=16%  Similarity=0.112  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEe-cCCCHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYF-KHNDMDS  227 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~-~~~d~~~  227 (483)
                      .+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++...+    ...|.+++.+ +.+|+++
T Consensus        57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~  136 (421)
T 2ctz_A           57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEE  136 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHH
T ss_pred             ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHH
Confidence            3678999999999999999999999999999999999999999999999888877665    6678999999 8889988


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcc-ccccccCCCCccccccCCCCCc
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN-SFGVLGRSGRGLTEHCGVPVDK  306 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~-s~g~lg~~G~g~~~~~~v~~~~  306 (483)
                      +++.+++          ++++|+++++++++|.+.|+++|+++|++||+++|+||+| ++|..+   +.+    +.   .
T Consensus       137 l~~~i~~----------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~---~~~----~~---~  196 (421)
T 2ctz_A          137 FLALTDE----------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL---RPL----AW---G  196 (421)
T ss_dssp             HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC---CGG----GG---T
T ss_pred             HHHhhcc----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC---Ccc----cc---C
Confidence            8887743          3788999999999999999999999999999999999999 766432   222    22   2


Q ss_pred             eeEEEccccccccCC----Cceeecc--HHH----HHHHHhc---CC---------------------ceeecCCCcHHH
Q 011567          307 IDIVTAAMGHALATE----GGFCTGS--ARV----VDHQRLS---SS---------------------GYVFSASLPPYL  352 (483)
Q Consensus       307 ~Di~~~s~~K~lg~~----GG~i~~~--~~~----~~~~~~~---~~---------------------~~~fs~~~~p~~  352 (483)
                      +|+++.|++|++++.    ||+++++  .++    .+.++..   ..                     ...++..++|+.
T Consensus       197 ~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~  276 (421)
T 2ctz_A          197 AALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFE  276 (421)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHH
T ss_pred             CeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHH
Confidence            489999999999853    4555542  122    1222210   00                     011344678888


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec------------------CCCCCEEEEEec
Q 011567          353 ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS------------------NPESPIVFLILE  406 (483)
Q Consensus       353 ~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~------------------~~~~~i~~l~l~  406 (483)
                      ++++...++.+.   ...++..++.+++.+.|.+.+++....                  ...++++.+.++
T Consensus       277 a~~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~  345 (421)
T 2ctz_A          277 AWVVLLGMETLS---LRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLK  345 (421)
T ss_dssp             HHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred             HHHHHcCcchHH---HHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeC
Confidence            888877776653   356667789999999999888876542                  235778999884

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.92  E-value=2.8e-23  Score=211.68  Aligned_cols=230  Identities=17%  Similarity=0.176  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+...+|+++|++++|.+.++++++|++|+..++.+++++||.|+++.+.|.++..    .+...|.+++.++.+|+++|
T Consensus        81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l  160 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV  160 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence            36789999999999999999999999999999999999999999999999988776    56678999999999999988


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          ++++|++|++++++|.+.|+++|+++|++||+++|+|++++.+.+-   +.  ..+     .+|
T Consensus       161 ~~ai~~----------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~---~~--~~~-----g~d  220 (430)
T 3ri6_A          161 EHACDE----------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL---EA--KRL-----GVD  220 (430)
T ss_dssp             HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC---CG--GGG-----TCS
T ss_pred             HHhhCC----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC---Ch--HHc-----CCE
Confidence            887743          3789999999999999999999999999999999999999865431   11  112     348


Q ss_pred             EEEccccccccC----CCceee--ccHHH------------------HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALAT----EGGFCT--GSARV------------------VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE  364 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~--~~~~~------------------~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~  364 (483)
                      +++.|++|++|+    .||+++  ++..+                  ++..+.. ....+++.++|..+..++..++.+.
T Consensus       221 iv~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~~~~~g~~~~~~~a~l~l~~l~~l~  299 (430)
T 3ri6_A          221 IEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-VFQNLGPSLSPHNAYLQSLGLETMA  299 (430)
T ss_dssp             EEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-HHHHHCCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-HHHhcCCCCCHHHHHHHHhhhhhHH
Confidence            999999999974    578877  43222                  2222211 1113445678888887777777664


Q ss_pred             cCcHHHHHHHHHHHHHHHhhccCCCceeecCCC----------------CC-EEEEEec
Q 011567          365 ENPDLITKLKKNTAILRTGLSDIHGLSIASNPE----------------SP-IVFLILE  406 (483)
Q Consensus       365 ~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----------------~~-i~~l~l~  406 (483)
                         ...++..+++..+.+.|++.+++..+..+.                +. ++++.++
T Consensus       300 ---~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~  355 (430)
T 3ri6_A          300 ---LRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE  355 (430)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred             ---HHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC
Confidence               367788899999999998887765322222                45 9999985

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.92  E-value=2.9e-23  Score=211.05  Aligned_cols=340  Identities=11%  Similarity=0.062  Sum_probs=209.7

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCC--CCCCcccChHHHHHHHHHHHhhh----C----CCCEEEeccc
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSC--GPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYG  178 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~--~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~sG  178 (483)
                      ..++||+.+++-.   .|.+.+++.+++.+.-....  .....|+......++++.+|+++    |    .++.+++++|
T Consensus        31 ~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  107 (417)
T 3g7q_A           31 PGAIMLGGGNPAH---IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS  107 (417)
T ss_dssp             -CCEECSCCCCCC---CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred             CCceEecCcCCCC---CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence            4689998874422   24444444444332100000  00002333333567777777776    2    2466777888


Q ss_pred             HHHHHhhhhhhccCCc-----EEEEc-CCchhHHHhHhh------hcCCeEEEecCC------CHHHHHHHHHHhhhhhh
Q 011567          179 LSTMFSAIPCFCKKGD-----LIVAD-EGVHWGIQNGLY------LSRSTVVYFKHN------DMDSLRNTLERVTADNK  240 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gd-----iI~~~-~~~h~s~~~g~~------~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~  240 (483)
                      ++|+..++++++++||     .|++. .+.|..+.....      ..+..+..++.+      |+++|+  +   ..   
T Consensus       108 t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~---~~---  179 (417)
T 3g7q_A          108 QSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--I---GE---  179 (417)
T ss_dssp             HHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--C---CT---
T ss_pred             HHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--c---cc---
Confidence            9999999999999876     77775 777766554432      122344444432      677776  2   22   


Q ss_pred             hccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccc
Q 011567          241 RAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA  317 (483)
Q Consensus       241 ~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~  317 (483)
                          .+++|+++.+++++|.+.|   +++|+++|++||+++|+||+|+.+..+....+..    ....+.+++++|+|| 
T Consensus       180 ----~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~----~~~~~~~i~~~s~sK-  250 (417)
T 3g7q_A          180 ----ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR----PLWNPNIILCMSLSK-  250 (417)
T ss_dssp             ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC----CCCCTTEEEEEESGG-
T ss_pred             ----CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc----cCCCCCEEEEEechh-
Confidence                3678888888899999999   8999999999999999999997532211101111    111345888999999 


Q ss_pred             ccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCcH-HHHHHHHHHHHHHHhhcc-CC-
Q 011567          318 LATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPD-LITKLKKNTAILRTGLSD-IH-  388 (483)
Q Consensus       318 lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~-~~~~l~~~~~~l~~~L~~-~~-  388 (483)
                      ++..|   ||+++++++++.++.....+.++.  +++.++++.+.++...   ...+ +.+.++++.+.+.+.|.+ ++ 
T Consensus       251 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  328 (417)
T 3g7q_A          251 LGLPGSRCGIIIANDKTITAIANMNGIISLAP--GGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSE  328 (417)
T ss_dssp             GTCTTSCCEEEECCHHHHHHHHHHHHHHCCCC--CSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccCCCcceEEEEeCHHHHHHHHHhhcceeeCC--CcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            55445   899999999988776544444433  4555555555554221   1111 455666777777777755 34 


Q ss_pred             -CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC----CCCceEEEccCCCCHHH
Q 011567          389 -GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR----LPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       389 -~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~----~~~~lRi~~~~~~t~ed  463 (483)
                       ++.+..+..+.++++.++....    +   ..+++..+ .++||.+.++..+......    .+..+||+++.  |+++
T Consensus       329 ~~~~~~~~~~g~~~~~~~~~~~~----~---~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~  398 (417)
T 3g7q_A          329 ERCLIHKPEGAIFLWLWFKDLPI----T---TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDK  398 (417)
T ss_dssp             TTCEEECCCBSSEEEEECTTCSS----C---HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHH
T ss_pred             CCceeeCCCcceEEEEEcCCCCC----C---HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHH
Confidence             4666655567888888753110    1   23566654 4569999987543221100    02359999975  9999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 011567          464 LVKACESLKRISAVVLR  480 (483)
Q Consensus       464 i~~~~~~l~~~~~~~~~  480 (483)
                      |++++++|+++++++..
T Consensus       399 i~~~~~~l~~~l~~~~~  415 (417)
T 3g7q_A          399 IEAGVKILAEEIERAWR  415 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=3.8e-23  Score=209.56  Aligned_cols=285  Identities=14%  Similarity=0.119  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...+|+++|++++|.++++++++|++|+..++. +.++||.|++..+.|.++...    ++..|.+++.++.+|+++++
T Consensus        67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~  145 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLE  145 (403)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHH
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHH
Confidence            5678999999999999999999999999999999 889999999888888775543    35678899999988888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC-cEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR-FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~-~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      +.++.          ++++|+++++++++|.+.|+++|+++|++|| +++|+||+|+.+.+..   .    ++   .++|
T Consensus       146 ~~i~~----------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~---~----~~---~~~d  205 (403)
T 3cog_A          146 AAITP----------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR---P----LA---LGAD  205 (403)
T ss_dssp             HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC---T----TT---TTCS
T ss_pred             HhcCc----------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC---c----cc---cCCe
Confidence            77642          3789999999999999999999999999999 9999999998765431   1    12   2359


Q ss_pred             EEEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      +++.|++|++++.    +|++++ ++++++.++.....  ++...+|+.+.++..+++.+.   ...++..++...+.+.
T Consensus       206 iv~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l~---~r~~~~~~n~~~l~~~  280 (403)
T 3cog_A          206 ISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS--LGAVPSPIDCYLCNRGLKTLH---VRMEKHFKNGMAVAQF  280 (403)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHH
Confidence            9999999999843    488887 47887776543222  344567888777777766442   3455555555555554


Q ss_pred             hcc--------------CCCceeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee---c-----
Q 011567          384 LSD--------------IHGLSIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS---K-----  438 (483)
Q Consensus       384 L~~--------------~~~~~i~~~---~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~---~-----  438 (483)
                      |++              .+++.+..+   ..++++.+.++..      . .   + ..+++++.|+++...   .     
T Consensus       281 l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~------~-~---~-~~~~l~~~~i~~~~~s~G~~~sl~  349 (403)
T 3cog_A          281 LESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT------L-Q---H-AEIFLKNLKLFTLAESLGGFESLA  349 (403)
T ss_dssp             HHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC------H-H---H-HHHHHHHCSSSEECSCCSSSSCEE
T ss_pred             HhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC------H-H---H-HHHHHHhCCcceEccCCCCcceee
Confidence            433              234433221   2477888887421      1 1   1 223455567765432   1     


Q ss_pred             -ccc-cccC-----------CCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          439 -RSM-LDKC-----------RLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       439 -~~~-~~~~-----------~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                       .|. ..++           ..+..||+++....++++|+.+.++|++++
T Consensus       350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~  399 (403)
T 3cog_A          350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH  399 (403)
T ss_dssp             ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred             ecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence             110 0011           113459999999888888888777776543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=3.8e-23  Score=214.14  Aligned_cols=319  Identities=13%  Similarity=0.124  Sum_probs=219.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCC-CcccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhh----ccCCc---
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPR-GFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCF----CKKGD---  194 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~-~~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~----~~~gd---  194 (483)
                      .+|++.+++.+.+..|  +...+. ...|..+...++++.+++++|.+..+++ ++|++++..++.++    .++||   
T Consensus        78 ~~p~v~~~~~~~~~~~--~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~  155 (474)
T 1wyu_B           78 YNPKLHEEAARLFADL--HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT  155 (474)
T ss_dssp             CCCHHHHHHHHTTSSC--CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCHHHHHHHHHHHHhc--CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence            4688888877663322  111111 2445567889999999999998877656 78888888765543    35676   


Q ss_pred             --EEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-cChHH
Q 011567          195 --LIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-APLDE  266 (483)
Q Consensus       195 --iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~~L~~  266 (483)
                        .|+++.++|+++...+...|.+++.++.+     |+++|++.+.+          .+++|++++. +++|.+ .++++
T Consensus       156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~----------~t~~v~~~~p-n~~G~~~~~l~~  224 (474)
T 1wyu_B          156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP----------HVAALMLTNP-NTLGLFERRILE  224 (474)
T ss_dssp             CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST----------TEEEEEECSS-CTTSCCCTTHHH
T ss_pred             CCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC----------CceEEEEECC-CCCcccCCCHHH
Confidence              88889999999999999999999998875     78888877642          2677777775 468988 69999


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-------CceeeccHHHHHHHHh--
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-------GGFCTGSARVVDHQRL--  337 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-------GG~i~~~~~~~~~~~~--  337 (483)
                      |+++|++||+++|+||+|+.+.+|.   .-...++     +|++++|++|+|+.+       .|++++++++++.+..  
T Consensus       225 i~~l~~~~g~~li~Dea~~~~~~g~---~~~~~~g-----~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~  296 (474)
T 1wyu_B          225 ISRLCKEAGVQLYYDGANLNAIMGW---ARPGDMG-----FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPL  296 (474)
T ss_dssp             HHHHHHHHTCEEEEEGGGGGGTTTT---CCHHHHT-----CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCE
T ss_pred             HHHHHHHcCCEEEEeCchhhhhccC---CCcccCC-----CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCe
Confidence            9999999999999999998776542   1111222     489999999999733       4888888888766541  


Q ss_pred             ---cCCceee-----------c-CCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC-CCC
Q 011567          338 ---SSSGYVF-----------S-ASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESP  399 (483)
Q Consensus       338 ---~~~~~~f-----------s-~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~  399 (483)
                         .+..|.+           . ...+++.++++.+.++.+..  ..+..++..++++++.+.|+++ |+++.... ...
T Consensus       297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  375 (474)
T 1wyu_B          297 VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMH  375 (474)
T ss_dssp             EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCS
T ss_pred             eeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcce
Confidence               0111211           1 12466677777777764422  2345788889999999999887 87763222 111


Q ss_pred             EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       400 i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .+.+.+.  .+      ....++++.+++ +||.+....++..    .+..+||+++..+|++|+++++++|++++++
T Consensus       376 ~~~~~~~--~~------~~~~~l~~~L~~-~Gi~~~~~~~~~~----~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          376 EFVAQPP--EG------FRALDLAKGLLE-LGFHPPTVYFPLI----VKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CEEEBCS--TT------CCHHHHHHHHHH-TTCCCCEESCSTT----STTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEcC--CC------CCHHHHHHHHHH-CCccccccccccc----cCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            1333331  11      013357776665 4998643333211    1245999999889999999999999988743

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.92  E-value=6.2e-24  Score=211.62  Aligned_cols=320  Identities=13%  Similarity=0.135  Sum_probs=215.9

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCC----CCCCcccChHHHHHHHHHHHhhhCCC--CEEEe-ccc-H
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSC----GPRGFYGTIDVHLDCEARIAKFLGTP--DSILY-SYG-L  179 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~----~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~-~sG-~  179 (483)
                      |+++++..+.+   ..+|.+.+++.+.++++. .+..    ..+ .++..+...++++++++++|.+  +.+++ +++ +
T Consensus         2 ~~~~~~~~g~~---~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt   77 (360)
T 1w23_A            2 KQVFNFNAGPS---ALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS   77 (360)
T ss_dssp             CCCEECCSSSC---CCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred             CceEeecCCCc---CCCHHHHHHHHHHhhhhccccccccccCCC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence            34566665533   356899999998887641 1111    111 2334457889999999999975  35555 555 7


Q ss_pred             HHHHhhhhhhcc---CCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHH-HHHHhhhhhhhccCccEEE
Q 011567          180 STMFSAIPCFCK---KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRN-TLERVTADNKRAKKLRRYI  249 (483)
Q Consensus       180 ~a~~~ai~~~~~---~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~-~l~~~~~~~~~~~~~~~~i  249 (483)
                      +|+..++.++..   ++|.|+++...|.+... +...| +++.++.      .|+++|++ .+.   +       ++++|
T Consensus        78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~-~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~---~-------~~k~v  145 (360)
T 1w23_A           78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKE-AKLLG-ETHIAASTKANSYQSIPDFSEFQLN---E-------NDAYL  145 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHH-HHTTS-EEEEEEECGGGTSCSCCCGGGCCCC---T-------TEEEE
T ss_pred             HHHHHHHHHhcCCCCcccEEEecchhHHHHHH-HHHhC-CeEEeecccccCcCCccchHhhccC---C-------CCCEE
Confidence            889988888775   46778888777766433 45567 8777653      25555655 331   1       36788


Q ss_pred             EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567          250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS  328 (483)
Q Consensus       250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~  328 (483)
                      ++.++++++|.+.|     +++++||+++|+||+|+.|...         .++  .+.|++++|++|++|+.| ||++++
T Consensus       146 ~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---------~~~--~~~di~~~s~sK~~~~~G~G~~~~~  209 (360)
T 1w23_A          146 HITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---------LKV--NQFGMIYAGAQKNLGPSGVTVVIVK  209 (360)
T ss_dssp             EEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTSCTTCEEEEEE
T ss_pred             EEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---------cCc--ccCCEEEEEcccccCCCCcEEEEEc
Confidence            88888999999877     3444899999999999875321         112  123789999999999777 999998


Q ss_pred             HHHHHHHHhcCC-----------ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567          329 ARVVDHQRLSSS-----------GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA  393 (483)
Q Consensus       329 ~~~~~~~~~~~~-----------~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~  393 (483)
                      +++++.++....           ++.+ ++.+...++++.++++.+.+.   +++.++++++.+++.+.|++++++ ...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  288 (360)
T 1w23_A          210 KDLLNTKVEQVPTMLQYATHIKSDSLY-NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGH  288 (360)
T ss_dssp             HHHHCSCCTTCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred             HHHHhhcccCCcchhhhhhhhhccCCC-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            888765543211           1111 234666666777788776542   467888999999999999887544 432


Q ss_pred             --cCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          394 --SNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       394 --~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                        ....++ ++++.+++        .....++.+. |.++||.+.+...       .+..+|++++..+|++|+++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-l~~~gi~~~~~~~-------~~~~iRis~~~~~~~~~i~~~~~~  352 (360)
T 1w23_A          289 AEKGSRSLMNVTFNLRN--------EELNQQFLAK-AKEQGFVGLNGHR-------SVGGCRASIYNAVPIDACIALREL  352 (360)
T ss_dssp             SCGGGBCSSEEEEECSS--------HHHHHHHHHH-HHHTTEESCBCCT-------TTCSEEEECCTTSCHHHHHHHHHH
T ss_pred             CCchhccCcEEEEEcCC--------CccHHHHHHH-HHHCCeeeecCCC-------CCCeEEEEecCCCCHHHHHHHHHH
Confidence              211344 78887732        1223456666 4456998865432       124599999998999999999999


Q ss_pred             HHHHHHH
Q 011567          471 LKRISAV  477 (483)
Q Consensus       471 l~~~~~~  477 (483)
                      |++++++
T Consensus       353 l~~~~~~  359 (360)
T 1w23_A          353 MIQFKEN  359 (360)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988754

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.92  E-value=2.5e-23  Score=212.12  Aligned_cols=343  Identities=10%  Similarity=0.011  Sum_probs=220.3

Q ss_pred             EEEeecCCCCC--CCCChHHHHHHH--HHHHhcCCCCCCCCCcc-cChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          111 VVNFASANYLG--LIGHEKLLESCT--SALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       111 ~id~~s~~~lG--~~~~p~i~~a~~--~~l~~~g~g~~~~~~~~-g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      .+||+.+.+--  +..++.+.+++.  +.++ .+.    ....| +......+|++.|+++++.+  +.++.+++++++.
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~----~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~  101 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGL----DLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQ  101 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTE----ETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cch----hhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHH
Confidence            57888763310  213346766664  3332 111    01123 33344578999999999864  4455566678886


Q ss_pred             --hhhhhhcc--C---------CcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCcc
Q 011567          184 --SAIPCFCK--K---------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       184 --~ai~~~~~--~---------gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                        .+++++..  +         ||.|++..+.|..+...+...|.+++.++.+    |+++|++.+++. .       ++
T Consensus       102 ~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~-~-------~~  173 (423)
T 3ez1_A          102 GLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAGTD-P-------SV  173 (423)
T ss_dssp             HHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHHSC-T-------TE
T ss_pred             HHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHhhC-C-------Cc
Confidence              78888877  7         5899999999999999999999998887754    788888888521 1       26


Q ss_pred             EEEEEe-cccCCCCCccChH---HHHHHH-HHcCcEEEEeCccccccccC-CCCccccccCC----CCCceeEEEccccc
Q 011567          247 RYIVVE-AVYQNSGQIAPLD---ELIRLK-EKYRFRVFLDESNSFGVLGR-SGRGLTEHCGV----PVDKIDIVTAAMGH  316 (483)
Q Consensus       247 ~~iv~e-~v~~~~G~i~~L~---~l~~l~-~k~~~~li~DEa~s~g~lg~-~G~g~~~~~~v----~~~~~Di~~~s~~K  316 (483)
                      ++|++. .+++++|.+.|.+   +|+++| ++||+++|+||+|+.+.++. .+......+.+    +..+.+++++|+||
T Consensus       174 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK  253 (423)
T 3ez1_A          174 KGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK  253 (423)
T ss_dssp             EEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTT
T ss_pred             eEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchh
Confidence            677655 5778899999965   888888 99999999999998654443 11111122211    12345788999999


Q ss_pred             ccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-Hh----cCcHHHHHHHHHHHHHHHh----hc
Q 011567          317 ALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LE----ENPDLITKLKKNTAILRTG----LS  385 (483)
Q Consensus       317 ~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~----~~~~~~~~l~~~~~~l~~~----L~  385 (483)
                      +++  ...||+++++++++.++.......+  +.+++...++.++++. ..    ...+..+.++++.+.+.+.    |.
T Consensus       254 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~  331 (423)
T 3ez1_A          254 ITFAGAGLGFVASSEDNIRWLSKYLGAQSI--GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELG  331 (423)
T ss_dssp             TSCSSSSCEEEEECHHHHHHHHHHHHHSCS--CCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCcceEEEEeCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            742  3348999999998887654333333  3356666666666654 11    1122344444444444444    44


Q ss_pred             cCC-CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHH
Q 011567          386 DIH-GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       386 ~~~-~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      ++. ++.+..+..+.++++.++..      +   ...+... ++++||.+.+ +.+........+..+||+++.. |+++
T Consensus       332 ~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~  400 (423)
T 3ez1_A          332 EGGEYATWTLPKGGYFISLDTAEP------V---ADRVVKL-AEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEE  400 (423)
T ss_dssp             TTTSSEEECCCSBSSCEEEEESSS------C---HHHHHHH-HHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHH
T ss_pred             cCCCceEEeCCCccEEEEEECCCC------c---HHHHHHH-HHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHH
Confidence            442 35665555677888888532      1   2245554 5567999987 4332211111134599999655 9999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011567          464 LVKACESLKRISAVVL  479 (483)
Q Consensus       464 i~~~~~~l~~~~~~~~  479 (483)
                      +++++++|+++++++.
T Consensus       401 i~~~~~~l~~~l~~~~  416 (423)
T 3ez1_A          401 VRTAMQVVAACIRLAT  416 (423)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.91  E-value=1.6e-23  Score=214.00  Aligned_cols=309  Identities=13%  Similarity=0.006  Sum_probs=207.4

Q ss_pred             ccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH--Hhhhhhhcc--C----------CcEEEEcCCchhHHHhHhhhc
Q 011567          150 YGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM--FSAIPCFCK--K----------GDLIVADEGVHWGIQNGLYLS  213 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~--~~ai~~~~~--~----------gdiI~~~~~~h~s~~~g~~~s  213 (483)
                      |+...-..+|++.||++++.+  +.++.+++++++  ..+++++..  +          ||.|+++.++|..+...++..
T Consensus        74 Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~  153 (427)
T 3ppl_A           74 YGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF  153 (427)
T ss_dssp             SCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc
Confidence            443344578999999999864  444556666788  477888776  5          899999999999999999999


Q ss_pred             CCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEe-cccCCCCCccChH---HHHHHH-HHcCcEEEEeCcc
Q 011567          214 RSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVE-AVYQNSGQIAPLD---ELIRLK-EKYRFRVFLDESN  284 (483)
Q Consensus       214 ~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e-~v~~~~G~i~~L~---~l~~l~-~k~~~~li~DEa~  284 (483)
                      |.+++.++.+    |+++|++.++.  .       ++++|++. ..++++|.+.|.+   +|+++| ++||+++|+||+|
T Consensus       154 g~~~~~v~~~~~g~d~~~l~~~l~~--~-------~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y  224 (427)
T 3ppl_A          154 GFEMISVPMNEDGPDMDAVEELVKN--P-------QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAY  224 (427)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHTTS--T-------TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHhc--C-------CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence            9998887754    77888777631  1       25677766 5678899999965   888999 9999999999999


Q ss_pred             ccccccCCCCccccccCC----CCCceeEEEcccccccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567          285 SFGVLGRSGRGLTEHCGV----PVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT  358 (483)
Q Consensus       285 s~g~lg~~G~g~~~~~~v----~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~  358 (483)
                      +.+.++..+......+++    +..+.+++++|+||+++  ...||+++++++++.++.......++  .+++...++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~q~~~~~  302 (427)
T 3ppl_A          225 AVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIG--PNKVNQLAHAR  302 (427)
T ss_dssp             TTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSC--CCHHHHHHHHH
T ss_pred             cccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCC--CCHHHHHHHHH
Confidence            977666443222222221    12345788999999853  23499999999988876543333333  35555555555


Q ss_pred             HHHH---Hh-cCcHHHHHHHHHHHHHHHhhcc----CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 011567          359 AIDV---LE-ENPDLITKLKKNTAILRTGLSD----IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKED  430 (483)
Q Consensus       359 al~~---l~-~~~~~~~~l~~~~~~l~~~L~~----~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~  430 (483)
                      +++.   +. ...+..+.++++.+.+.+.|.+    +.++.+..+..+.++++.++..      +   ..++.+. |.++
T Consensus       303 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~-l~~~  372 (427)
T 3ppl_A          303 YFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG------T---ASRVAEL-AKEA  372 (427)
T ss_dssp             HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT------C---HHHHHHH-HHHT
T ss_pred             HHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc------h---HHHHHHH-HHHC
Confidence            5432   11 1123455555566666555533    3346655555677888888532      1   2345554 4567


Q ss_pred             CEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          431 GVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       431 Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ||.+.+ +.+........+..+||+++.. |+++|++++++|+++++++..
T Consensus       373 gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~~  422 (427)
T 3ppl_A          373 GIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAAA  422 (427)
T ss_dssp             TEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            999988 3322211111235599999654 999999999999999987643

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.91  E-value=5e-23  Score=205.50  Aligned_cols=307  Identities=12%  Similarity=0.115  Sum_probs=209.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCC---CCcc--cChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCc
Q 011567          124 GHEKLLESCTSALEKYGVGSCGP---RGFY--GTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGD  194 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~---~~~~--g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gd  194 (483)
                      .+|.+++++.+.+.+++ +.+++   ...+  +..+...++++++++++|.+   +.+++ ++|++++..++.++.++||
T Consensus        15 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd   93 (362)
T 2c0r_A           15 LPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQ   93 (362)
T ss_dssp             CCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred             CCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCC
Confidence            57899999999887652 22111   1111  12346789999999999976   34556 6788999999999999999


Q ss_pred             EEEEcCCchhHH--HhHhhhcCCeEEEecCC---------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-c
Q 011567          195 LIVADEGVHWGI--QNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-A  262 (483)
Q Consensus       195 iI~~~~~~h~s~--~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~  262 (483)
                      .|++....|++.  ...++..| +++.++.+         |.++++     ..+       ++++|++.++.+++|.. .
T Consensus        94 ~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~-----i~~-------~t~~v~~~~~~n~tG~~~~  160 (362)
T 2c0r_A           94 TANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ-----LQD-------NAAYLHLTSNETIEGAQFK  160 (362)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC-----CCT-------TEEEEEEESEETTTTEECS
T ss_pred             eEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc-----cCC-------CcCEEEEeCCcCccceecc
Confidence            876654444442  34555667 77666532         222221     111       36778887778889994 7


Q ss_pred             ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCCc
Q 011567          263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~~  341 (483)
                      |+++|      ||+++|+||+|+.|...         .++  .+.|++++|++|++|+.| ||+++++++++.++.....
T Consensus       161 ~l~~i------~~~~vivD~a~~~~~~~---------~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~  223 (362)
T 2c0r_A          161 AFPDT------GSVPLIGDMSSDILSRP---------FDL--NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPT  223 (362)
T ss_dssp             SCCCC------TTSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCG
T ss_pred             ccccc------CCCEEEEEChhhccCCc---------cch--hHCcEEEEeccccccCcCcEEEEEcHHHHhhccccCch
Confidence            78876      89999999999876321         122  234899999999999777 9999988877655321110


Q ss_pred             e----------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eeecC---CCCCEEEEE
Q 011567          342 Y----------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIASN---PESPIVFLI  404 (483)
Q Consensus       342 ~----------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~~~---~~~~i~~l~  404 (483)
                      +          ....+.|+...+++.++++.+.+.   ++++++.+++++++.+.|+++.++ ++..+   ...+++.+.
T Consensus       224 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (362)
T 2c0r_A          224 MLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFR  303 (362)
T ss_dssp             GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEE
T ss_pred             HHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEE
Confidence            0          112345777777888888876653   578899999999999999987435 66422   234567776


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++.        .....++++. |+++||.+.+....       +..||+++...+|++|+++++++|++++++
T Consensus       304 ~~~--------~~~~~~~~~~-L~~~gi~~~~g~~~-------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          304 LAS--------EELEKEFVKA-SEQEGFVGLKGHRS-------VGGLRASIYNAVPYESCEALVQFMEHFKRS  360 (362)
T ss_dssp             CSC--------HHHHHHHHHH-HHHTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCC--------cchHHHHHHH-HHHCCCeeccCCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            631        1224466765 55569976543211       245999999999999999999999998765

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.91  E-value=1.3e-22  Score=205.26  Aligned_cols=228  Identities=13%  Similarity=0.147  Sum_probs=176.4

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh-----hhcCCeEEEecCCCHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL-----YLSRSTVVYFKHNDMDS  227 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~-----~~s~~~v~~~~~~d~~~  227 (483)
                      .+...+|+++|+++.|.+++++++||++|+.. +.++.++||.|++....|++....+     ...|.++..++.+|+++
T Consensus        66 ~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~  144 (400)
T 3nmy_A           66 NPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAA  144 (400)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHH
Confidence            46778999999999999999999999999987 5668899999998888887665543     33588999999999999


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +++.+++          ++++|++|++++++|.+.|+++|+++|++||+++|+||+|+.+.+..   .  ..+     .+
T Consensus       145 l~~~i~~----------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~---~--~~~-----g~  204 (400)
T 3nmy_A          145 FKAAIRA----------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR---P--LSL-----GA  204 (400)
T ss_dssp             HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---G--GGG-----TC
T ss_pred             HHHHhcc----------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC---h--hhc-----CC
Confidence            9887743          37899999999999999999999999999999999999998654331   1  112     34


Q ss_pred             eEEEccccccccC----CCc--eeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          308 DIVTAAMGHALAT----EGG--FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG--~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                      |+++.|++|++++    .||  ++++++++.+.++....  .++..++|+.++.++..++.+.   ...++..++++.+.
T Consensus       205 div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~l~~l~~l~---~r~~~~~~~a~~l~  279 (400)
T 3nmy_A          205 DLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN--SIGGVQGPFDSFLALRGLKTLP---LRMRAHCENALALA  279 (400)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH--HHCCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHH
T ss_pred             cEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHhHhHHH---HHHHHHHHHHHHHH
Confidence            8999999999984    357  45567788777654432  2344568888887777766553   46778888999999


Q ss_pred             HhhccCCCceeec-----------------CCCCCEEEEEec
Q 011567          382 TGLSDIHGLSIAS-----------------NPESPIVFLILE  406 (483)
Q Consensus       382 ~~L~~~~~~~i~~-----------------~~~~~i~~l~l~  406 (483)
                      +.|++.+.+.-+.                 ...+.++.+.++
T Consensus       280 ~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~  321 (400)
T 3nmy_A          280 QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK  321 (400)
T ss_dssp             HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred             HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence            9998876554221                 224679999984

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.91  E-value=1e-21  Score=205.46  Aligned_cols=312  Identities=15%  Similarity=0.123  Sum_probs=206.3

Q ss_pred             ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc-------c-CCc------EEEEcCCchhHHHhHhhhcCC
Q 011567          152 TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC-------K-KGD------LIVADEGVHWGIQNGLYLSRS  215 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~-------~-~gd------iI~~~~~~h~s~~~g~~~s~~  215 (483)
                      ......++.+++++++|.+  ..+++++|++|+..++.++.       + +|+      .|+++...|.++.++++..|.
T Consensus       146 ~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~  225 (515)
T 2jis_A          146 FVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGL  225 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCC
Confidence            3456777888999999975  56777899999998887763       2 465      889999999999999888777


Q ss_pred             ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567          216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                         +++.++.+     |+++|++.+++....    ..++++|++....+++|.+.|+++|.++|++||+++|+|++|+++
T Consensus       226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~----g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~  301 (515)
T 2jis_A          226 GTDSVRVVKADERGKMVPEDLERQIGMAEAE----GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGS  301 (515)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             CCCcEEEEecCCCCcCCHHHHHHHHHHHHhC----CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhH
Confidence               78888764     789999988754221    113678888888889999999999999999999999999999987


Q ss_pred             cccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHH--HHHHHHhcCCceeec-----------------C
Q 011567          288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSAR--VVDHQRLSSSGYVFS-----------------A  346 (483)
Q Consensus       288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~--~~~~~~~~~~~~~fs-----------------~  346 (483)
                      .+.... ......++  ..+|++++|++|+++ +.| |+++.+++  +++.......+|.+.                 .
T Consensus       302 ~~~~~~-~~~~~~g~--~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~  378 (515)
T 2jis_A          302 VLLSQT-HRHLLDGI--QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC  378 (515)
T ss_dssp             GGGCTT-TGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCS
T ss_pred             HHhChh-hHhhcCCC--ccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCC
Confidence            653211 00111233  255999999999997 433 66666554  555321111122111                 0


Q ss_pred             --CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC--C--CchhhHH---
Q 011567          347 --SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST--G--SMKNDLQ---  417 (483)
Q Consensus       347 --~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~--~--~~~~~~~---  417 (483)
                        ....+.+.++++++.. +...++.++..++++++.+.|++++++++..++....+.+++.+..  +  ....-..   
T Consensus       379 ~rr~~al~~~~~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~  457 (515)
T 2jis_A          379 GRRVDCLKLWLMWKAQGD-QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLS  457 (515)
T ss_dssp             SCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHH
T ss_pred             CCcccHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHH
Confidence              0112333333333321 1224578889999999999999988999886656667777653210  0  0000011   


Q ss_pred             -HHHHHHHHHHHhCCEEE-EeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHH
Q 011567          418 -LLEDIADWALKEDGVFV-VTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       418 -~~~~i~~~~l~~~Gv~v-~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       ....+...++++ |+.+ ........     +..+|+++ +..+|++||++++++|++++++
T Consensus       458 ~~~~~l~~~l~~~-G~~~~~~~~~~~~-----~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          458 KVAPVLKERMVKE-GSMMIGYQPHGTR-----GNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             THHHHHHHHHHHH-TSCEEEEEEETTE-----EEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc-CCEEEEEEEECCc-----eEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence             122356665555 6543 32211100     12499999 8999999999999999987643

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.91  E-value=2.6e-22  Score=206.64  Aligned_cols=330  Identities=11%  Similarity=0.019  Sum_probs=220.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-------EEEecccHHHHHhhhhhhcc-----
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-------SILYSYGLSTMFSAIPCFCK-----  191 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-------~i~~~sG~~a~~~ai~~~~~-----  191 (483)
                      .+|.+.+++.+++.+...+..   ...+......++.+.+++++|.+.       ++++++|++|+..++.++..     
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~  130 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKE---EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR  130 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChh---hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            568888888888765433211   122445677888889999999752       67779999999998877643     


Q ss_pred             ---CC-----cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          192 ---KG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       192 ---~g-----diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                         +|     +.|++.. +|.++.+.+...|.+++.++.+      |+++|++.+.+          .+++|++....++
T Consensus       131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----------~t~~v~~~~~~n~  199 (452)
T 2dgk_A          131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE----------NTIGVVPTFGVTY  199 (452)
T ss_dssp             HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT----------TEEEEECBBSCTT
T ss_pred             HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh----------CCEEEEEEcCCcC
Confidence               33     5788888 9999999999999999888753      67777776643          2577877777788


Q ss_pred             CCCccChHHHHHHHHHc------CcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEcccccccc-C-CCceee
Q 011567          258 SGQIAPLDELIRLKEKY------RFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALA-T-EGGFCT  326 (483)
Q Consensus       258 ~G~i~~L~~l~~l~~k~------~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~-~GG~i~  326 (483)
                      +|.+.|+++|.++|++|      |+++++|++|+.+..   ...++     +......+|+++.+.+|.+. + ..|+++
T Consensus       200 tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~hK~~~~~~~~G~~~  274 (452)
T 2dgk_A          200 TGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-----WDFRLPRVKSISASGHKFGLAPLGCGWVI  274 (452)
T ss_dssp             TCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-----CSTTSTTEEEEEEETTTTTCCCSSCEEEE
T ss_pred             CcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-----hhcCCCCCcEEEECcccccCCCCCeEEEE
Confidence            99999999999999996      999999999987653   22111     11222467999999999763 2 237776


Q ss_pred             cc-HHHH-HHHHhcCCce------ee--cCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567          327 GS-ARVV-DHQRLSSSGY------VF--SASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS  394 (483)
Q Consensus       327 ~~-~~~~-~~~~~~~~~~------~f--s~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~  394 (483)
                      .+ ++.. +.+... ..|      .+  ..+.+...+.+..++++.+.  ...+..++..++++++.+.|++++++++..
T Consensus       275 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~  353 (452)
T 2dgk_A          275 WRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFIC  353 (452)
T ss_dssp             ESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred             EcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence            64 3332 333211 111      11  11222212222333444332  224578888999999999999987788764


Q ss_pred             C----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          395 N----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       395 ~----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      +    +..+++.+++.+....    .....++.+.+. ++|+.+.....+..-.  ....+|+++...+|++|++++++.
T Consensus       354 ~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~--~~~~lRis~~~~~t~e~id~li~~  426 (452)
T 2dgk_A          354 TGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLR-LRGWQVPAFTLGGEAT--DIVVMRIMCRRGFEMDFAELLLED  426 (452)
T ss_dssp             ECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHH-HTTCBCCEEECSTTCT--TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHH-hcCCeeeeeeCCcccC--CeEEEEEEecCCCCHHHHHHHHHH
Confidence            3    4568888888532100    001235666544 4688765322221100  013499999999999999999999


Q ss_pred             HHHHHHHHHh
Q 011567          471 LKRISAVVLR  480 (483)
Q Consensus       471 l~~~~~~~~~  480 (483)
                      |+++++.+..
T Consensus       427 l~~~~~~~~~  436 (452)
T 2dgk_A          427 YKASLKYLSD  436 (452)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999877643

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.91  E-value=1.2e-21  Score=204.59  Aligned_cols=313  Identities=15%  Similarity=0.151  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhhhcc--------CC-----c-EEEEcCCchhHHHhHhhhcCC
Q 011567          154 DVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------KG-----D-LIVADEGVHWGIQNGLYLSRS  215 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~~~~--------~g-----d-iI~~~~~~h~s~~~g~~~s~~  215 (483)
                      .+..++.+++++++|.+    ..+++++|++|+..++.++..        +|     + .|+++...|.++.+++...+.
T Consensus       132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~  211 (504)
T 2okj_A          132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF  211 (504)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence            45566667789999965    456778999999998877642        45     6 788899999999999887765


Q ss_pred             ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567          216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG  287 (483)
Q Consensus       216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g  287 (483)
                         +++.++.+     |+++|++.+++...+    ...+++|++....+++|.+.|+++|.++|++||+++++|++|+++
T Consensus       212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~----g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~  287 (504)
T 2okj_A          212 GTDNVILIKCNERGKIIPADFEAKILEAKQK----GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG  287 (504)
T ss_dssp             CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             CcccEEEEecCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhH
Confidence               78888765     889999988754321    113678888888888999999999999999999999999999987


Q ss_pred             cccCCCCccccccCCCCCceeEEEcccccccc-CC-CceeeccH-HHHHHHHhcCCceeecCC-----------------
Q 011567          288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TE-GGFCTGSA-RVVDHQRLSSSGYVFSAS-----------------  347 (483)
Q Consensus       288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~-GG~i~~~~-~~~~~~~~~~~~~~fs~~-----------------  347 (483)
                      .+..... -....++  ..+|+++.+.+|+++ +. .|+++.++ ++++.......+|.++..                 
T Consensus       288 ~~~~~~~-~~~~~g~--~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  364 (504)
T 2okj_A          288 LLMSRKH-RHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCG  364 (504)
T ss_dssp             GGGCTTT-GGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSS
T ss_pred             HHhCHhh-HhhcCCc--ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCC
Confidence            6532110 0111223  246999999999997 33 36666554 465543222223332111                 


Q ss_pred             --CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCC--C---Cch---hh
Q 011567          348 --LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKST--G---SMK---ND  415 (483)
Q Consensus       348 --~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~--~---~~~---~~  415 (483)
                        ..++.+.++++++.. +...++.++..++++++.+.|++++++++..  .+...++.+++.+..  +   ...   ..
T Consensus       365 rr~~~l~~~a~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~  443 (504)
T 2okj_A          365 RHVDIFKFWLMWKAKGT-VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKL  443 (504)
T ss_dssp             CBCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHH
T ss_pred             CCccHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHH
Confidence              124444444444431 2234578889999999999999988998875  356666777653211  0   000   00


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-CCCCHHHHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .....++.+.+++++.+++........     +..+|+++. ..+|++||++++++|++++++++
T Consensus       444 ~~~~~~l~~~L~~~G~~~~~~~~~~~~-----~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~  503 (504)
T 2okj_A          444 HKVAPKIKALMMESGTTMVGYQPQGDK-----ANFFRMVISNPAATQSDIDFLIEEIERLGQDLH  503 (504)
T ss_dssp             TTHHHHHHHHHHHHTSCEEEEEEETTE-----EEEEEECCCCTTCCHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhCCcEEEEeeEECCc-----eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            112346777766663345543322110     124999995 88999999999999999876653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.90  E-value=6.6e-23  Score=209.14  Aligned_cols=344  Identities=12%  Similarity=-0.012  Sum_probs=219.0

Q ss_pred             EEEeecCCCC--CCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHH--H
Q 011567          111 VVNFASANYL--GLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTM--F  183 (483)
Q Consensus       111 ~id~~s~~~l--G~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~--~  183 (483)
                      +|||+.+.+-  .+..++.+.+++.+++. ..+..    ...|+...-..+|++.+|++++.+ +.|++ +++++++  .
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~  109 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVD----CRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFD  109 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCB----TTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchh----hhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHH
Confidence            6899887441  02233567666654421 11100    012333333578999999999864 45555 5555666  5


Q ss_pred             hhhhhhccC------------CcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccE
Q 011567          184 SAIPCFCKK------------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       184 ~ai~~~~~~------------gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      .+++++..+            +|.|+++.++|..+...++..|.+++.++.+    |+++|++.+++.         +++
T Consensus       110 ~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~---------~~~  180 (422)
T 3d6k_A          110 LISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDP---------QVK  180 (422)
T ss_dssp             HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTST---------TEE
T ss_pred             HHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcC---------CCe
Confidence            666777655            3478888888888888888889998887753    678888777431         256


Q ss_pred             EEE-EecccCCCCCccCh---HHHHHHHH-HcCcEEEEeCccccccccCCCCccccccC----CCCCceeEEEccccccc
Q 011567          248 YIV-VEAVYQNSGQIAPL---DELIRLKE-KYRFRVFLDESNSFGVLGRSGRGLTEHCG----VPVDKIDIVTAAMGHAL  318 (483)
Q Consensus       248 ~iv-~e~v~~~~G~i~~L---~~l~~l~~-k~~~~li~DEa~s~g~lg~~G~g~~~~~~----v~~~~~Di~~~s~~K~l  318 (483)
                      +|+ +..+++++|.+.|.   ++|+++|+ +||+++|+||+|+.+.++..|........    ....+.+++++|+||+.
T Consensus       181 ~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  260 (422)
T 3d6k_A          181 GMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKIT  260 (422)
T ss_dssp             EEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTS
T ss_pred             EEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhc
Confidence            666 56678889999995   48888888 99999999999985334433322211111    11234578899999984


Q ss_pred             cC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHhhcc----CC
Q 011567          319 AT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD----IH  388 (483)
Q Consensus       319 g~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l----~~~~~~~~~l~~~~~~l~~~L~~----~~  388 (483)
                      ++  ..||+++++++++.++.....+.+  +.+++..+++.++++..    +...+.++.++++.+.+.+.|.+    +.
T Consensus       261 ~~GlriG~~~~~~~l~~~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~  338 (422)
T 3d6k_A          261 HAGSGVSFFASSKENIEWYASHANVRGI--GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYG  338 (422)
T ss_dssp             CTTSSCEEEECCHHHHHHHHHHHHHHCS--CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             CcccceEEEEeCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence            32  239999999998887654333333  34677777776666431    11123455566666666666643    32


Q ss_pred             CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567          389 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       389 ~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      ++.+..+..+.++++.++..      +   ...+.. .++++||.+.+ ...........+..+||+++. +|+++++++
T Consensus       339 ~~~~~~p~~g~~~~~~~~~~------~---~~~~~~-~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~  407 (422)
T 3d6k_A          339 VAKWTSPTGGYFISVDVVPG------T---ASRVVE-LAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVA  407 (422)
T ss_dssp             CEEECCCSBSSCEEEEESTT------C---HHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHH
T ss_pred             ceEEeCCCcceEEEEECCCC------C---HHHHHH-HHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHH
Confidence            35555455677888888531      1   123444 45567999988 332211000112459999987 899999999


Q ss_pred             HHHHHHHHHHHHh
Q 011567          468 CESLKRISAVVLR  480 (483)
Q Consensus       468 ~~~l~~~~~~~~~  480 (483)
                      +++|+++++++..
T Consensus       408 ~~~l~~~l~~~~~  420 (422)
T 3d6k_A          408 MDGFATCVLMAAL  420 (422)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987754

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.90  E-value=1.3e-22  Score=205.23  Aligned_cols=240  Identities=13%  Similarity=0.087  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHHh----------HhhhcCCeEEEe
Q 011567          155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQN----------GLYLSRSTVVYF  220 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~~----------g~~~s~~~v~~~  220 (483)
                      -+.+|++.+|+++|.+.+++   ++||++|+..++.++.++||.|+++. +.|..+..          .++..|.+++.+
T Consensus        60 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v  139 (409)
T 3jzl_A           60 GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSV  139 (409)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEe
Confidence            47889999999999999998   89999999999999999999999987 77777653          445668888888


Q ss_pred             cC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccc
Q 011567          221 KH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVL  289 (483)
Q Consensus       221 ~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~l  289 (483)
                      +.     .|++++++.++.          ++++|++++    +++++|.+.|+++|+++|++  ||+++++||+|+.++.
T Consensus       140 ~~~~~g~~d~e~l~~ai~~----------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~  209 (409)
T 3jzl_A          140 PLLENGDVDFPRIAKKMTP----------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE  209 (409)
T ss_dssp             CCCTTSCCCHHHHHHHCCT----------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred             CCCCCCCcCHHHHHHhccC----------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence            77     578888776642          378999999    99999999999999999999  9999999999987653


Q ss_pred             cCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhc--CCceeecCCCcHHHHHHHHHHHHHH
Q 011567          290 GRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       290 g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~--~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      +.  ..    ..   ..+|++++|++|++|+    .|||+++++++++.++..  ..+..+..+..+..+.++...++.+
T Consensus       210 ~~--~p----~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~  280 (409)
T 3jzl_A          210 YQ--EP----PE---VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA  280 (409)
T ss_dssp             SC--CS----GG---GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred             cC--Cc----cc---cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH
Confidence            32  11    11   2348999999999973    479999999999988652  2222222222221123344444433


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                         +..+++..+++.++.+.|+++ |+++.+. .++     ++.+.++        +.+.+.++++.+
T Consensus       281 ---~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l~--------~~~~~~~~~~~L  335 (409)
T 3jzl_A          281 ---PHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSFH--------NKEKMVAFAQAI  335 (409)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEECS--------CHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEeC--------CHHHHHHHHHHH
Confidence               457888999999999999987 7777543 444     8888884        234456777754

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.90  E-value=3.3e-22  Score=202.97  Aligned_cols=242  Identities=13%  Similarity=0.123  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHH-----------hHhhhcCCeEEE
Q 011567          155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQ-----------NGLYLSRSTVVY  219 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~-----------~g~~~s~~~v~~  219 (483)
                      -..+||+++|+++|.+.+++   ++||++|+..++.++.++||.|+++. +.|....           ..+...|.+++.
T Consensus        75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  154 (427)
T 3hvy_A           75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKM  154 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEE
T ss_pred             hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEE
Confidence            47899999999999999998   89999999999999999999999987 6666544           345557888888


Q ss_pred             ecC----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccc
Q 011567          220 FKH----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVL  289 (483)
Q Consensus       220 ~~~----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~l  289 (483)
                      ++.    .|++++++.+++. .       ++++|++++    +++++|.+.|+++|+++|++  ||+++++|++|+.+++
T Consensus       155 v~~~~~~~d~e~l~~~i~~~-~-------~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~  226 (427)
T 3hvy_A          155 VDLKDGKVDINTVKEELKKD-D-------SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE  226 (427)
T ss_dssp             CCCBTTBCCHHHHHHHHHHC-T-------TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS
T ss_pred             ecCCCCCcCHHHHHHHhhCC-C-------CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc
Confidence            887    6899999888641 1       378999999    88999999999999999999  8999999999987654


Q ss_pred             cCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhc--CCceeecCCCcHHHHHHHHHHHHHH
Q 011567          290 GRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       290 g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~--~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      +.  ...    .   ..+|++++|++|++|+    .||++++++++++.++..  ..+..++.+.++..+..+...++.+
T Consensus       227 ~~--~p~----~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~  297 (427)
T 3hvy_A          227 EK--EPT----D---VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA  297 (427)
T ss_dssp             SS--CGG----G---GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred             CC--CCc----c---cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH
Confidence            32  111    1   2348999999999974    579999999999988762  2333222222222234444444433


Q ss_pred             hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          364 EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                         +.+.++..+++.++.+.|+++ |+.+.+. .++     ++.+.++        +.+.+.++++.+
T Consensus       298 ---~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l~--------~~~~~~~f~~~l  352 (427)
T 3hvy_A          298 ---PHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKFN--------DEKKLIDFIKGI  352 (427)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEECS--------SHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeCC--------CHHHHHHHHHHh
Confidence               457888999999999999987 7777544 455     8888884        233455677653

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.90  E-value=6.4e-23  Score=220.51  Aligned_cols=315  Identities=16%  Similarity=0.121  Sum_probs=207.6

Q ss_pred             ccChHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhH-hhhcCCeEEEecC-----
Q 011567          150 YGTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYFKH-----  222 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g-~~~s~~~v~~~~~-----  222 (483)
                      +++...+.++++.+|+++|.+.++++++|+ +++..++.+++++||.|++++..|.++..+ +.++|.+++.++.     
T Consensus       169 ~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~  248 (730)
T 1c4k_A          169 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY  248 (730)
T ss_dssp             TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred             cCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            345567899999999999999988887776 889999999999999999999999999999 8999998876642     


Q ss_pred             -----CCHHHH-----HHHHHHhhhhhhhccCc-cEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-cc
Q 011567          223 -----NDMDSL-----RNTLERVTADNKRAKKL-RRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LG  290 (483)
Q Consensus       223 -----~d~~~L-----e~~l~~~~~~~~~~~~~-~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg  290 (483)
                           -|+++|     ++.+++...+....+.+ +.++++++.  .+|.+.|+++|+++|++||+++++||+|+.+. ++
T Consensus       249 ~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~  326 (730)
T 1c4k_A          249 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI  326 (730)
T ss_dssp             CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred             CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence                 177888     55554320000001112 344555553  57999999999999999999999999997542 33


Q ss_pred             CCCCccc----cccCCCCCceeEEEccccccccCC--CceeeccHH-------HHH--HHHhcCCceeecCCCcHHHHHH
Q 011567          291 RSGRGLT----EHCGVPVDKIDIVTAAMGHALATE--GGFCTGSAR-------VVD--HQRLSSSGYVFSASLPPYLASA  355 (483)
Q Consensus       291 ~~G~g~~----~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~~~-------~~~--~~~~~~~~~~fs~~~~p~~~aa  355 (483)
                      ..++|..    +..+.+ +..+++++|+||++++.  ||++..+++       .++  .+... ....++++.++..+++
T Consensus       327 ~~~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~-~~~~~stsp~~~~iaa  404 (730)
T 1c4k_A          327 PMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNS-FNLFMSTSPFYPMYAA  404 (730)
T ss_dssp             GGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHH-HHHHSCSSCCHHHHHH
T ss_pred             cccCCcCcccccccCCC-CCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHH-HHHhCCCCCcHHHHHH
Confidence            3222111    112332 12238999999999743  466633222       111  11111 1123345667777777


Q ss_pred             HHHHHHHHhc--CcHHHHHHHHHHHHHHHhhcc-CCCceeecCC------------------------------------
Q 011567          356 AITAIDVLEE--NPDLITKLKKNTAILRTGLSD-IHGLSIASNP------------------------------------  396 (483)
Q Consensus       356 a~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~------------------------------------  396 (483)
                      ..++++.+..  ..+.++++.++.+++++.|++ ++|+.+..+.                                    
T Consensus       405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  484 (730)
T 1c4k_A          405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGY  484 (730)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTC
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccccc
Confidence            7778887764  356788999999999999988 6788765321                                    


Q ss_pred             -CC-----CE-EEEEecC---CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567          397 -ES-----PI-VFLILEK---STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       397 -~~-----~i-~~l~l~~---~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~  466 (483)
                       .+     |. +.+..+.   ..+...........+.+. |.++||.+....         ...+|++++..+|++++++
T Consensus       485 ~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~-L~e~GI~v~~~~---------~~~ir~~~s~g~t~e~i~~  554 (730)
T 1c4k_A          485 GDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY-LRDHGIIPEKSD---------LNSILFLMTPAETPAKMNN  554 (730)
T ss_dssp             CTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHH-HHHTTCCCSEEC---------SSEEEEECCTTCCHHHHHH
T ss_pred             CCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHH-HHHCCcEEEECC---------CCeEEEEeCCCCCHHHHHH
Confidence             11     11 3333321   000000000112345655 445599886542         2449999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          467 ACESLKRISAVV  478 (483)
Q Consensus       467 ~~~~l~~~~~~~  478 (483)
                      ++++|+++.+..
T Consensus       555 Ll~aL~~i~~~~  566 (730)
T 1c4k_A          555 LITQLLQLQRLI  566 (730)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=1e-21  Score=197.26  Aligned_cols=318  Identities=13%  Similarity=0.121  Sum_probs=214.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHH-HhhhC-CCCEEEecccHHHHHhhhhhh-ccCCcEEEEcC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG-TPDSILYSYGLSTMFSAIPCF-CKKGDLIVADE  200 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~L-a~~~g-~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~  200 (483)
                      ..+++.+++.+.++.. .       +++..+...+|++++ |+++| .++++++++|++|+..++.++ .++||.|+++.
T Consensus        14 ~~~~i~~a~~~~~~~~-~-------~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~   85 (377)
T 3ju7_A           14 PVIEYLDELKEIDASH-I-------YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPS   85 (377)
T ss_dssp             CGGGGHHHHHHHHHHT-C-------CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEES
T ss_pred             CcHHHHHHHHHHHHcC-C-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECC
Confidence            4578899999998862 2       111236678999999 99999 888999999999999999988 89999999999


Q ss_pred             CchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567          201 GVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY  274 (483)
Q Consensus       201 ~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~  274 (483)
                      ..|.++...+...|.+++.++.+      |++++++.+.....       ++++|+.   .+++|.+.|+++|.++|+ |
T Consensus        86 ~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~-------~tk~v~~---~~~~G~~~~~~~i~~la~-~  154 (377)
T 3ju7_A           86 FTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKE-------EVAIVVP---YATFGSWMNLEEYEELEK-K  154 (377)
T ss_dssp             SSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGG-------GEEEECC---BCGGGBCCCCHHHHHHHH-T
T ss_pred             CCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCC-------CceEEEE---ECCCCCccCHHHHHHHHh-c
Confidence            99999999999999998887643      78888887743211       1566663   334699999999999999 9


Q ss_pred             CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeec-cHHHHHHHHhcC-Cc---------e
Q 011567          275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTG-SARVVDHQRLSS-SG---------Y  342 (483)
Q Consensus       275 ~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~-~~~~~~~~~~~~-~~---------~  342 (483)
                      |+++|+|++|++|.... ++    ..|-...++++...+.+|.++ +.||+++. ++++.+.++... .+         .
T Consensus       155 ~~~vi~D~a~a~g~~~~-~~----~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~  229 (377)
T 3ju7_A          155 GVPVVVDAAPGFGLMNG-GM----HYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM  229 (377)
T ss_dssp             TCCBEEECTTCTTCEET-TE----ETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred             CCEEEEECCCccCCeEC-CE----eccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence            99999999999875421 11    111001223444334479997 44577654 566666554321 11         1


Q ss_pred             eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc--eeecCCC---C-CEEEEEecCCCCCchhhH
Q 011567          343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL--SIASNPE---S-PIVFLILEKSTGSMKNDL  416 (483)
Q Consensus       343 ~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~--~i~~~~~---~-~i~~l~l~~~~~~~~~~~  416 (483)
                      .+...++++.++.+...++.++   +..++.+++.+++.+.|++++++  .+.....   . .++.+.+.+..       
T Consensus       230 g~~~~~~~~~aa~~~~~l~~l~---~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  299 (377)
T 3ju7_A          230 GFNCKMSEYAAAIGIATMKKWD---DKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV-------  299 (377)
T ss_dssp             CCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-------
T ss_pred             cccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-------
Confidence            2334578888888877776553   46778888888899988887543  2221111   1 13344443210       


Q ss_pred             HHHHHHHHHHHHhCCEEEEeeccccccc------C---CCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          417 QLLEDIADWALKEDGVFVVTSKRSMLDK------C---RLP-------VGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~------~---~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       ...++.+. |+++||.++....+.+..      .   ..|       ..||+.++..+|++|+++++++|++++..
T Consensus       300 -~~~~l~~~-L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          300 -RNKQVIED-LKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             -CHHHHHHH-HHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             -hHHHHHHH-HHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence             02245554 666799887654222111      0   111       13999999999999999999999887653

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.90  E-value=5e-21  Score=198.85  Aligned_cols=304  Identities=13%  Similarity=0.076  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHhhhCCCC-----------EEEecccHHHHHhhhhhhccC---------C---------c-EEEEcCCch
Q 011567          154 DVHLDCEARIAKFLGTPD-----------SILYSYGLSTMFSAIPCFCKK---------G---------D-LIVADEGVH  203 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~-----------~i~~~sG~~a~~~ai~~~~~~---------g---------d-iI~~~~~~h  203 (483)
                      .+..++.+++++++|.+.           .+++++|++|+..++.+...+         |         + +|+++...|
T Consensus       113 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h  192 (486)
T 1js3_A          113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH  192 (486)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred             HHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence            445556667788888763           578899999998887654311         2         3 478899999


Q ss_pred             hHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          204 WGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       204 ~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      .++.++++..|.+++.++.+     |+++|++.+++....    .....+|++....+++|.+.|+++|.++|++||+++
T Consensus       193 ~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~----g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~l  268 (486)
T 1js3_A          193 SSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA----GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL  268 (486)
T ss_dssp             HHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEE
Confidence            99999999999999888764     789999998764321    111246666667788999999999999999999999


Q ss_pred             EEeCcccccccc-CCCCccccccCCCCCceeEEEccccccccCC--Cceeecc-HHH-HHHHHhcCCceeec--------
Q 011567          279 FLDESNSFGVLG-RSGRGLTEHCGVPVDKIDIVTAAMGHALATE--GGFCTGS-ARV-VDHQRLSSSGYVFS--------  345 (483)
Q Consensus       279 i~DEa~s~g~lg-~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~-~~~-~~~~~~~~~~~~fs--------  345 (483)
                      ++|++|+++.+- +..++.  ..++  ..+|+++++.+|+++.+  .|+++.+ +.. .+.+.. ...|.+.        
T Consensus       269 hvD~a~g~~~~~~~~~~~~--~~g~--~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~  343 (486)
T 1js3_A          269 HVDAAYAGSAFICPEFRHL--LNGV--EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKL-DPVYLKHSHQGSGLI  343 (486)
T ss_dssp             EEECTTGGGGGGSTTTGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-------------CCSC
T ss_pred             EEehhhHHHHHHCHHHHHH--hcCc--cccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcC-CchhhCCCcccccCC
Confidence            999999877642 222222  1233  34588889999999732  3666554 433 333211 0111110        


Q ss_pred             ---------C--CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          346 ---------A--SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       346 ---------~--~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                               .  ....+.+.+++..+. .+...++.++..++++++.+.|++++++++..++..+++.+++...      
T Consensus       344 ~~~~~~~~~~~rr~~~~~~~~al~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~------  416 (486)
T 1js3_A          344 TDYRHWQLPLGRRFRSLKMWFVFRMYG-VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS------  416 (486)
T ss_dssp             CCGGGSSSCSCCCCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC------
T ss_pred             CCccccCCCCCCchhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecCh------
Confidence                     1  112222223333221 1223457888889999999999988899987666778888887421      


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                       .....++.+.+.+++.+++.+..+..      ...+|+++ +...|++||+++++.|+++++++..
T Consensus       417 -~~~~~~l~~~L~~~g~~~~~~~~~~~------~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~  476 (486)
T 1js3_A          417 -DGLNEALLERINSARKIHLVPCRLRG------QFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA  476 (486)
T ss_dssp             -HHHHHHHHHHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHhcCCEEEEEEEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             12235677766665334334332211      23499996 5567999999999999999887754

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.90  E-value=3.9e-22  Score=202.40  Aligned_cols=242  Identities=9%  Similarity=0.102  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHH-----------hHhhhcCCeEEE
Q 011567          155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQ-----------NGLYLSRSTVVY  219 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~-----------~g~~~s~~~v~~  219 (483)
                      -+.+||+.+|+++|.+.+++   ++||++|+..++.++.++||.|+++. +.|..+.           ..+...|.+++.
T Consensus        74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  153 (427)
T 3i16_A           74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ  153 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEE
T ss_pred             HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEE
Confidence            47899999999999999988   89999999999999999999999987 7776554           344556888888


Q ss_pred             ecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCcccccc
Q 011567          220 FKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGV  288 (483)
Q Consensus       220 ~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~  288 (483)
                      ++.     .|++++++.+++. .       ++++|++++    +++++|.+.|+++|+++|++  ||+++++||+|+.++
T Consensus       154 v~~~~~g~~D~e~l~~~l~~~-~-------~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~  225 (427)
T 3i16_A          154 VDLKEDGKPNLEEIEKVLKED-E-------SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFM  225 (427)
T ss_dssp             CCCCTTSSCCHHHHHHHHHTC-T-------TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTS
T ss_pred             ecCccCCCcCHHHHHHHhhCC-C-------CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            886     5888998888631 1       378999999    89999999999999999999  999999999998765


Q ss_pred             ccCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcH-HH-HHHHHHHHHH
Q 011567          289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPP-YL-ASAAITAIDV  362 (483)
Q Consensus       289 lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p-~~-~aaa~~al~~  362 (483)
                      ++.  ...  .     ..+|++++|++|++|+    .|||+++++++++.++.......++..+.| +. +..+...++.
T Consensus       226 ~~~--~p~--~-----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~  296 (427)
T 3i16_A          226 DTK--EPT--D-----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFL  296 (427)
T ss_dssp             SSS--CGG--G-----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH
T ss_pred             ccC--Ccc--c-----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHH
Confidence            332  111  1     2348999999999974    579999999999988762111112221222 22 3333334433


Q ss_pred             HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          363 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       363 l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                      +   +.+.++..+++.++.+.|+++ ++.+.+. .++     ++.+.++        +.+.+.++++.+
T Consensus       297 ~---~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~~i~~i~l~--------~~~~~~~f~~~l  352 (427)
T 3i16_A          297 A---PHISMEALKGAILCSRIMELA-GFEVMPK-YDEKRSDIIQSIKFN--------DKDKLIEFCKGI  352 (427)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCEEEECS--------SHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCccEEEEEEEC--------CHHHHHHHHHHH
Confidence            3   568889999999999999987 7777543 555     8888884        234456777753

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.89  E-value=4.5e-22  Score=204.86  Aligned_cols=288  Identities=16%  Similarity=0.155  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +...++++++++++|.++++++++|++|+..++. +.++||.|++..+.|.++...    +...|.+++.++.+|+++|+
T Consensus       133 ~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~  211 (464)
T 1ibj_A          133 PTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVA  211 (464)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence            4789999999999999999999999999988876 778999999888888877643    45678899999988998888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.|...   .. .+ +     ++|+
T Consensus       212 ~~i~~----------~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---~~-~~-~-----~~di  271 (464)
T 1ibj_A          212 AAIGP----------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---RP-LE-L-----GADI  271 (464)
T ss_dssp             HHCCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---CG-GG-T-----TCSE
T ss_pred             HHhcc----------CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC---Ch-hh-c-----CCEE
Confidence            77642          3789999999999999999999999999999999999999765321   11 11 2     3499


Q ss_pred             EEccccccccC----CCceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH-
Q 011567          310 VTAAMGHALAT----EGGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRT-  382 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~-  382 (483)
                      ++.|++|++++    .+|+++++ +++++.++....  .++.+.+++.+.++.++++.+.. .....+......+++.+ 
T Consensus       272 v~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~--~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~  349 (464)
T 1ibj_A          272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSH  349 (464)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH--HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHH--hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999974    34888887 477776654321  12234578777777777653321 01112222333333332 


Q ss_pred             ---------hhccCCCceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc------c----
Q 011567          383 ---------GLSDIHGLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR------S----  440 (483)
Q Consensus       383 ---------~L~~~~~~~i~~~~---~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~------~----  440 (483)
                               .|.+++++.+..+.   .++++.+.+++        .....++.+. |+..||.++.+..      +    
T Consensus       350 ~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~--------~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~  420 (464)
T 1ibj_A          350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--------VALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMS  420 (464)
T ss_dssp             TTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--------HHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTT
T ss_pred             CCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC--------HHHHHHHHHh-cCcceEeecCCCCceeeecccccc
Confidence                     23334455544322   36788888731        1112345554 3445777665431      0    


Q ss_pred             --ccc-----cCCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          441 --MLD-----KCRL-PVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       441 --~~~-----~~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                        ..+     .... +..||+++..    ||++++++.|++++++
T Consensus       421 ~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          421 HASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             TCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             cccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence              000     0001 2349999976    8999999999988753

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.89  E-value=7.1e-22  Score=210.73  Aligned_cols=304  Identities=14%  Similarity=0.136  Sum_probs=209.4

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------  223 (483)
                      ...+.++++.+|+++|.++++++++|+ .||..++.+++++||.|++++.+|.|+..++.++|.++++++..        
T Consensus       194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~  273 (715)
T 3n75_A          194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG  273 (715)
T ss_dssp             BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBC
T ss_pred             cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccccccccc
Confidence            347899999999999999999998885 89999999999999999999999999999999999998887631        


Q ss_pred             -------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCCCCc
Q 011567          224 -------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRSGRG  295 (483)
Q Consensus       224 -------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~G~g  295 (483)
                             |+++|++.+++....    +..+.+|+++|  +++|.+.|+++|.++|++++  +++||+|+.+. +++.+.+
T Consensus       274 ~i~~~~~d~e~Le~~l~~~~~~----k~p~~vivt~p--n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~  345 (715)
T 3n75_A          274 GIPQSEFQHATIAKRVKETPNA----TWPVHAVITNS--TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG  345 (715)
T ss_dssp             CCCGGGGSHHHHHHHHHHSTTC----CSCSEEEEESS--CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred             CcccccCCHHHHHHHHhhCcCc----cCceEEEEECC--CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence                   789999998764321    01125666666  67899999999999999874  79999998764 4432222


Q ss_pred             cccc-cCCCCCceeEE---EccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--Cc
Q 011567          296 LTEH-CGVPVDKIDIV---TAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NP  367 (483)
Q Consensus       296 ~~~~-~~v~~~~~Di~---~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~  367 (483)
                      .... .+   ..+|++   ++|+||++++  .||++..+.++..........+.+++++++..+++..+++++++.  ..
T Consensus       346 ~~al~~g---~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~  422 (715)
T 3n75_A          346 KCGMSGG---RVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGK  422 (715)
T ss_dssp             SSTTSSS---CCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHH
T ss_pred             ccccccC---cCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccH
Confidence            2111 11   113544   8999999985  578887665432222222334566778889999989999998863  45


Q ss_pred             HHHHHHHHHHHHHHHhhccCCC------ceeecCCC----------------------------CCE-EEEEecCC--CC
Q 011567          368 DLITKLKKNTAILRTGLSDIHG------LSIASNPE----------------------------SPI-VFLILEKS--TG  410 (483)
Q Consensus       368 ~~~~~l~~~~~~l~~~L~~~~~------~~i~~~~~----------------------------~~i-~~l~l~~~--~~  410 (483)
                      ++++++.++.+++++.|+++++      +.+..+..                            .|. +.+..+..  .|
T Consensus       423 ~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G  502 (715)
T 3n75_A          423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDG  502 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCC
Confidence            7889999999999999977642      23221100                            111 12222110  01


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ......-....+.+ .|+++||.+......         .+=+.++...|++++++++++|.++-+.
T Consensus       503 ~~~~~Gi~g~~~~~-~L~~~~I~~E~~d~~---------~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          503 TMSDFGIPASIVAK-YLDEHGIVVEKTGPY---------NLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             CBCSSCCCHHHHHH-HHHHTTCCCSEEETT---------EEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcHHHHHH-HHHHCCCEEEecCCC---------cEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            00000000113333 466679987654322         2556778889999999999999887553

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.88  E-value=9.6e-22  Score=201.86  Aligned_cols=283  Identities=15%  Similarity=0.179  Sum_probs=192.2

Q ss_pred             ChHHHHHHHHHHHhhhCCCCEEEeccc-HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--CC----
Q 011567          152 TIDVHLDCEARIAKFLGTPDSILYSYG-LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--ND----  224 (483)
Q Consensus       152 ~~~~~~~l~~~La~~~g~e~~i~~~sG-~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--~d----  224 (483)
                      ......++++.+++ +|.++.+++++| ++++..++++++++||.|++++.+|.++..++...|.+++.++.  ++    
T Consensus        55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~  133 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH  133 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred             cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence            34567899999999 998777776554 69999999999999999999999999999999999998887765  32    


Q ss_pred             --HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          225 --MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       225 --~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                        .-+++++   ...       ++++|++.+ .+++|.+.|+++|+++|++||+++|+||+|+. .++-.+. .......
T Consensus       134 ~~~~d~~~l---~~~-------~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~-~~~~~~~  200 (446)
T 2x3l_A          134 YNKVNLSRL---NND-------GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGF-PDSTLNY  200 (446)
T ss_dssp             EEEEEC-----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTS-CCCGGGG
T ss_pred             CCCCCHHHH---cCC-------CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCC-CCChHHc
Confidence              1123333   111       245666665 45589999999999999999999999999986 2322122 1111111


Q ss_pred             CCCceeEEEcccccccc-C-CCceeeccHHHHH--HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-cH-HHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALA-T-EGGFCTGSARVVD--HQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PD-LITKLKKN  376 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg-~-~GG~i~~~~~~~~--~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~-~~~~l~~~  376 (483)
                         .+|+++.|++|+++ + .+|+++++++.++  .++... ....+++.+...+++..++++.++.. .+ +.++.+++
T Consensus       201 ---g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~-~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l  276 (446)
T 2x3l_A          201 ---QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYL-SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL  276 (446)
T ss_dssp             ---TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHH-HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ---CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence               24899999999775 3 3488888776544  222211 11123345566666666677777653 23 77888888


Q ss_pred             HHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567          377 TAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS  456 (483)
Q Consensus       377 ~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~  456 (483)
                      .+++++.     ++++........+++.+...      +   ..++.+.+.+ +||.+....         ...+|++++
T Consensus       277 ~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------~---~~~l~~~L~~-~GI~v~~~g---------~~~iRi~~~  332 (446)
T 2x3l_A          277 IECLENK-----GFEMLQVDDPLKLLIKYEGF------T---GHDIQNWFMN-AHIYLELAD---------DYQALAILP  332 (446)
T ss_dssp             HHHHHHH-----TCEEEECSSTTEEEEECTTS------C---HHHHHHHHHH-TTEEESEEC---------SSCEEEECC
T ss_pred             HHHHHHc-----CCEECcCCCCeEEEEEeCCc------C---HHHHHHHHHH-CCCEEEecC---------CCEEEEEee
Confidence            8888776     66665443334566665310      1   2346665555 499986221         134999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+|++|+ +++++|+++++.
T Consensus       333 ~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          333 LWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             CCCTTCCC-CHHHHHHHHHTC
T ss_pred             cCCCHHHH-HHHHHHHHHHHh
Confidence            98999999 999999988654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.88  E-value=2.1e-21  Score=210.52  Aligned_cols=315  Identities=13%  Similarity=0.113  Sum_probs=209.8

Q ss_pred             cChHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------
Q 011567          151 GTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------  223 (483)
Q Consensus       151 g~~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------  223 (483)
                      .+.....++++.+++++|.++++++++|+ +++..++.+++++||.|++++..|.++..++..+|.+++.++..      
T Consensus       202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~  281 (755)
T 2vyc_A          202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGI  281 (755)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSC
T ss_pred             cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcccc
Confidence            34457789999999999999888887775 78999999999999999999999999999999999998877531      


Q ss_pred             ---------CHHHHHHHHHHhhhh-hhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCC
Q 011567          224 ---------DMDSLRNTLERVTAD-NKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRS  292 (483)
Q Consensus       224 ---------d~~~Le~~l~~~~~~-~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~  292 (483)
                               |+++|++.+++.... .++.+.++.++++++  +.+|.+.|+++|+++|++||+++++||+|+.+. ++..
T Consensus       282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~  359 (755)
T 2vyc_A          282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPI  359 (755)
T ss_dssp             BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGG
T ss_pred             ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcc
Confidence                     788999888753211 001112234555654  457999999999999999999999999997542 3322


Q ss_pred             CCccccccC--CC-CCceeEEEccccccccCC--CceeeccHH--HH--HHHHhcCCceeecCCCcHHHHHHHHHHHHHH
Q 011567          293 GRGLTEHCG--VP-VDKIDIVTAAMGHALATE--GGFCTGSAR--VV--DHQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       293 G~g~~~~~~--v~-~~~~Di~~~s~~K~lg~~--GG~i~~~~~--~~--~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      +++.....+  .+ .+..++++.|+||++++.  ||++..+++  .+  ..+... .....+++.+...+++..++++.+
T Consensus       360 ~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~-~~~~~s~sp~~~~iaal~aA~~~l  438 (755)
T 2vyc_A          360 YADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA-YMMHATTSPLYAICASNDVAVSMM  438 (755)
T ss_dssp             GTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH-HHHTSCSSCCHHHHHHHHHHHHHH
T ss_pred             cCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHH
Confidence            111211122  22 123455899999999743  566655443  11  122111 011224456677777777888877


Q ss_pred             hc--CcHHHHHHHHHHHHHHHhhccCCC---------ceeecCC------------------------------------
Q 011567          364 EE--NPDLITKLKKNTAILRTGLSDIHG---------LSIASNP------------------------------------  396 (483)
Q Consensus       364 ~~--~~~~~~~l~~~~~~l~~~L~~~~~---------~~i~~~~------------------------------------  396 (483)
                      ..  ..+.++++.++.++++++|+++++         +.+..+.                                    
T Consensus       439 ~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (755)
T 2vyc_A          439 DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESW  518 (755)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCccccc
Confidence            64  356888999999999999977655         4333211                                    


Q ss_pred             -------------CCCEEEEEecC--CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567          397 -------------ESPIVFLILEK--STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE  461 (483)
Q Consensus       397 -------------~~~i~~l~l~~--~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~  461 (483)
                                   +...+.+.++.  ..+......-....+.+ .|+++||.+....         ...+|++++...|+
T Consensus       519 h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~-~L~~~gI~~e~~~---------~~~v~~~~~~g~t~  588 (755)
T 2vyc_A          519 HGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTA-WLGRHGIVPTRTT---------DFQIMFLFSMGVTR  588 (755)
T ss_dssp             TCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHH-HHHTTTCCCSEEC---------SSEEEEECCTTCCT
T ss_pred             ccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHH-HHHHCCCEEeecC---------CCeEEEEECCCCCH
Confidence                         11244444432  11100000001123444 4666798775431         24499999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISAVV  478 (483)
Q Consensus       462 edi~~~~~~l~~~~~~~  478 (483)
                      +++++++++|+++.+..
T Consensus       589 ~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          589 GKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999887544

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.87  E-value=2.1e-21  Score=197.87  Aligned_cols=243  Identities=13%  Similarity=0.122  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHHhHhh----------hcCCeEEE
Q 011567          154 DVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQNGLY----------LSRSTVVY  219 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~~g~~----------~s~~~v~~  219 (483)
                      ....++++.+++++|.+.+.+   +++|++|+..++.++.++||.|+++. +.|.++...+.          ..|.+++.
T Consensus        65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~  144 (431)
T 3ht4_A           65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA  144 (431)
T ss_dssp             HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred             hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence            457899999999999988776   78999999999999999999999887 88888876554          36788888


Q ss_pred             ecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCcccccc
Q 011567          220 FKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGV  288 (483)
Q Consensus       220 ~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~  288 (483)
                      ++++     |+++|++.+++          ++++|++++    +.++.|.+.++++|+++|++  ||+++|+||+|+.+.
T Consensus       145 v~~~~~~~~d~e~l~~~l~~----------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~  214 (431)
T 3ht4_A          145 VPLTEGGLVDFEAVAAAIHS----------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI  214 (431)
T ss_dssp             CCBCTTSSBCHHHHHHHCCT----------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred             eCCCCCCCcCHHHHHhhcCC----------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence            8874     88888887742          378899886    66677888889999999999  999999999998775


Q ss_pred             ccCCCCccccccCCCCCceeEEEcccccccc----CCCceeeccHHHHHHHHh--cCCceeecCCCcHHHHHHHHHHHHH
Q 011567          289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQRL--SSSGYVFSASLPPYLASAAITAIDV  362 (483)
Q Consensus       289 lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg----~~GG~i~~~~~~~~~~~~--~~~~~~fs~~~~p~~~aaa~~al~~  362 (483)
                      .+.  ...  .+     .+|++++|++|++|    ..|||+++++++++.++.  ...++..+.+.++..+.++...++.
T Consensus       215 ~~~--~~~--~~-----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  285 (431)
T 3ht4_A          215 EEQ--EPC--HV-----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL  285 (431)
T ss_dssp             SSC--CGG--GT-----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH
T ss_pred             cCC--Ccc--cc-----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh
Confidence            432  111  12     24899999999975    468999999999988765  2222222222222223334455554


Q ss_pred             HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          363 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       363 l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                      +   +...++..+++.++.+.|+++ |+++.+. .+.     ++.+.++        +...+.++++.+.+
T Consensus       286 ~---~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l~--------~~~~~~~~~~~l~~  343 (431)
T 3ht4_A          286 A---PHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQFD--------DKDRMIAFCQAIQY  343 (431)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEECC--------CHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEeC--------CHHHHHHHHHHHHh
Confidence            4   457788899999999999886 6666433 333     7788874        22345567775443

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.86  E-value=3.7e-20  Score=190.73  Aligned_cols=296  Identities=14%  Similarity=0.125  Sum_probs=194.0

Q ss_pred             hHHHHHHHHHHHhhhCCCC-EEEecccH-HHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC------
Q 011567          153 IDVHLDCEARIAKFLGTPD-SILYSYGL-STMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------  222 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~-~i~~~sG~-~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------  222 (483)
                      .+...++++++++++|.+. ++++++|+ .++..++.++..  +++.|++....|.++.+.++..|.+++.++.      
T Consensus       132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~  211 (456)
T 2z67_A          132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR  211 (456)
T ss_dssp             HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred             HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCC
Confidence            3566789999999999875 55667778 566656655443  6787887778999999999999998877653      


Q ss_pred             --CCHHHHHHHHH-HhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccc
Q 011567          223 --NDMDSLRNTLE-RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH  299 (483)
Q Consensus       223 --~d~~~Le~~l~-~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~  299 (483)
                        .|+++|++.++ .....      ++++|++...++++|.+.|+++|.++|++||+++++||+|+....|...... ..
T Consensus       212 ~~~d~~~l~~~i~~~~~~~------~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~-~~  284 (456)
T 2z67_A          212 VYVPVEDIENAIKKEIELG------NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KA  284 (456)
T ss_dssp             EECCHHHHHHHHHHHHHTT------CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH-HH
T ss_pred             CCcCHHHHHHHHHHHhhCC------CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHH-Hh
Confidence              37899998883 21111      3566767777678899999999999999999999999998755443100000 00


Q ss_pred             cCCCCCceeEEEcccccccc-CC-Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALA-TE-GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLK  374 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg-~~-GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~  374 (483)
                      .  . ..+|+++.|++|+++ +. +|+++. ++++++.+.....+   ..+.++  +.++.+++..+.  ..+++.++..
T Consensus       285 ~--~-~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g---~~~~~~--~~~~~aal~~l~~~~~~~~~~~~~  356 (456)
T 2z67_A          285 F--K-YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPG---RASATP--VVNTLVSLLSMGSKNYLELVKNQK  356 (456)
T ss_dssp             H--T-SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCS---CBCSHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--C-CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCC---CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  1 145899999999864 33 488877 57777766433222   222233  222333444332  2245788899


Q ss_pred             HHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE-EEeec----ccccccCC
Q 011567          375 KNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF-VVTSK----RSMLDKCR  446 (483)
Q Consensus       375 ~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~-v~~~~----~~~~~~~~  446 (483)
                      ++++++.+.|++++   |+.+..+ . +++.+.+..+.     .   ..++.+.+. ++|+. ++...    +.. .++.
T Consensus       357 ~~~~~l~~~L~~~~~~~g~~v~~~-~-~~v~~~~~~~~-----~---~~~l~~~L~-~~gi~~~rv~~~~g~f~G-~~~~  424 (456)
T 2z67_A          357 NSKKLLDELLNDLSKKTGGKFLDV-E-SPIASCISVNS-----D---PVEIAAKLY-NLRVTGPRGIKKTDHFGN-CYLG  424 (456)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCBCCC-C-CSSEEEEECSS-----C---HHHHHHHHH-HTTEESCEEECTTCHHHH-TCSS
T ss_pred             HHHHHHHHHHHhcccccCCEecCC-C-CeEEEEEeccc-----H---HHHHHHHHH-HcCCCcceEEeecCcccc-cccc
Confidence            99999999998875   7666544 3 66666662111     0   235666544 45752 11110    000 0000


Q ss_pred             --CCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          447 --LPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       447 --~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                        +.+.+|++++..+|++|+|+++++|++++
T Consensus       425 ~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          425 TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence              11359999999999999999999998764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.85  E-value=3.4e-20  Score=187.50  Aligned_cols=283  Identities=11%  Similarity=0.036  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHhhhCCC---CEEE-ecccHHHHHhhhhhhccCC-cEEEEcCCchhHHH-hHhhhc--CCeEEEecCCCH
Q 011567          154 DVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKG-DLIVADEGVHWGIQ-NGLYLS--RSTVVYFKHNDM  225 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e---~~i~-~~sG~~a~~~ai~~~~~~g-diI~~~~~~h~s~~-~g~~~s--~~~v~~~~~~d~  225 (483)
                      +...++++++++++|.+   +.++ .++|++++..+++++.++| ++|  ....|.... ......  |.+++.++.++-
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g  155 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHL--TYGEFSAKFASAVSKNPFVGEPIIITSDPG  155 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSCEEEE--ECSHHHHHHHHHHHHCTTSCCCEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCCeEEE--eCCHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence            46789999999999975   3455 5788899999999998887 444  555564322 122333  566666554310


Q ss_pred             HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      .....   +...       ++++|++.++.+++|.+.|+++|.++   ||+++|+||+|+.|...         .++  .
T Consensus       156 ~~~~~---~i~~-------~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~---------~~~--~  211 (398)
T 2fyf_A          156 SAPEP---QTDP-------SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP---------VDI--A  211 (398)
T ss_dssp             CCCCC---CCCT-------TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---------CCG--G
T ss_pred             CCCCc---cccC-------CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc---------cCc--c
Confidence            00000   1111       35677777888899999999888887   89999999999875321         122  2


Q ss_pred             ceeEEEccccccccCCC--ceeeccHHHHHHHHhcC--------------------CceeecCCCcHHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSS--------------------SGYVFSASLPPYLASAAITAIDVL  363 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~--------------------~~~~fs~~~~p~~~aaa~~al~~l  363 (483)
                      ++|++++|++|++|+.|  ||+++++++++.++...                    .++.+. +.+...++++.++++.+
T Consensus       212 ~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~a~~~al~~~  290 (398)
T 2fyf_A          212 ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYN-TPAIATLALLAEQIDWL  290 (398)
T ss_dssp             GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSS-CCCHHHHHHHHHHHHHH
T ss_pred             cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCC-CCCHHHHHHHHHHHHHH
Confidence            35899999999998764  67888888877653210                    012222 34566666677788765


Q ss_pred             hc---CcHHHHHHHHHHHHHHHhhccCCCceeec-CC--CCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe
Q 011567          364 EE---NPDLITKLKKNTAILRTGLSDIHGLSIAS-NP--ESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT  436 (483)
Q Consensus       364 ~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~--~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~  436 (483)
                      .+   .++..++.+++++++.+.|++++|+.+.. .+  .++ ++++.++...     +   ..++.+.+.+ +||.+.+
T Consensus       291 ~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~-~gI~v~~  361 (398)
T 2fyf_A          291 VGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----D---AGTVAKILRA-NGIVDTE  361 (398)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----C---HHHHHHHHHH-TTCBCCS
T ss_pred             HHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-----C---HHHHHHHHHH-CCcEEec
Confidence            43   25678889999999999999887887763 12  356 8888874211     1   2356766555 4999875


Q ss_pred             ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          437 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       437 ~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .. ...    .+..+|+++...+|++|+++++++|++++++
T Consensus       362 g~-~~~----~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          362 PY-RKL----GRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             CC-TTT----CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             Cc-ccC----CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            41 111    0245999999889999999999999988754

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.85  E-value=2.5e-21  Score=195.45  Aligned_cols=274  Identities=12%  Similarity=0.051  Sum_probs=187.2

Q ss_pred             HHHHHHHHhhhC-------CCCEEEe-cccHHHHHhhhhhhccCCc----EEEEcCCchhHHHhHhhhcCCeEEEecCCC
Q 011567          157 LDCEARIAKFLG-------TPDSILY-SYGLSTMFSAIPCFCKKGD----LIVADEGVHWGIQNGLYLSRSTVVYFKHND  224 (483)
Q Consensus       157 ~~l~~~La~~~g-------~e~~i~~-~sG~~a~~~ai~~~~~~gd----iI~~~~~~h~s~~~g~~~s~~~v~~~~~~d  224 (483)
                      .+|++.+|++++       .++.+++ +++++++..++.+++++||    .|+++.++|..+...++..|.+++.++.+ 
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-  149 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD-  149 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE-
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC-
Confidence            788899999887       2334555 5566899999999999999    99999999999999999989888777653 


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCC
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                      .+.++      ..       ++++|++..++|++|.+.+  +|++  ++|+  +++|+||+|..+   . ...+.    .
T Consensus       150 ~~~l~------~~-------~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~~---~-~~~l~----~  204 (391)
T 3bwn_A          150 AWGFD------KK-------GPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYWP---H-YTPIT----R  204 (391)
T ss_dssp             STTCC------CC-------SCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCST---T-TSCCC----C
T ss_pred             HHHcC------CC-------CCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCCC---C-CCccc----c
Confidence            23332      01       3567777888899999886  4444  2255  999999999741   1 01111    1


Q ss_pred             CCCceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh----------c-Cc
Q 011567          303 PVDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----------E-NP  367 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~----------~-~~  367 (483)
                       ..+.+|+++|+||++|..|   ||+++ ++++++.++.......  .+.+++...++.++++...          + ..
T Consensus       205 -~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  281 (391)
T 3bwn_A          205 -RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNS--IGVSKESQVRTAKILNVLKETCKSESESENFFK  281 (391)
T ss_dssp             -CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHH
T ss_pred             -CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccc--cCCCHHHHHHHHHHHhCcchhccccccHHHHHH
Confidence             1345899999999999777   99886 8888887754322111  2346666666667776431          1 24


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCceeecC-------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567          368 DLITKLKKNTAILRTGLSDIHGLSIASN-------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV  434 (483)
Q Consensus       368 ~~~~~l~~~~~~l~~~L~~~~~~~i~~~-------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v  434 (483)
                      +.++.++++.+++.+.|++++++.+..+             +.+.++++.+++.            +.+..+++++||.+
T Consensus       282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~gV~v  349 (391)
T 3bwn_A          282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------TDLVSELRRHKVMS  349 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------CCHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH------------HHHHHHHHHCCEEE
Confidence            5778888999999999988766655322             2233677777421            11333566679999


Q ss_pred             EeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          435 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       435 ~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .++..+..    .+..+||++..  +++++++++++|++++++
T Consensus       350 ~pg~~fg~----~~~~iRis~~~--~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          350 RAGERCGS----DKKHVRVSMLS--REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             EEGGGGTC----CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred             ccCCCCCC----CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            98765432    12459999973  899999999999887654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.85  E-value=5.2e-20  Score=193.28  Aligned_cols=340  Identities=10%  Similarity=0.071  Sum_probs=204.5

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHH-HhhhC--C----CCEEE-ecccHHHH
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG--T----PDSIL-YSYGLSTM  182 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~L-a~~~g--~----e~~i~-~~sG~~a~  182 (483)
                      ++||+.+.+ ++ +.|.+.+++.+.+..  .+++.   ..|..++..++.+.+ .+..+  .    ++.|+ .+++++++
T Consensus       106 ~i~l~~g~~-~~-~~~~~~~al~~~~~~--~~Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal  178 (546)
T 2zy4_A          106 SLSYVRDQL-GL-DPAAFLHEMVDGILG--CNYPV---PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM  178 (546)
T ss_dssp             HHHHHHHTS-CC-CHHHHHHHHHHHHHT--CSCCS---SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred             hhecccCCC-CC-CChHHHHHHHHhhhc--CCCCC---CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence            677777644 56 567788888777742  21111   123334444433332 22221  1    23444 46667888


Q ss_pred             Hhhhhh-----hccCCcEEEEcCCchhHHHhHhhhc--CCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEE
Q 011567          183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLS--RSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       183 ~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s--~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      ..++.+     ++++||.|+++.++|..+.....+.  |.+++.++.       .|+++|++.+   ..       ++++
T Consensus       179 ~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~-------~~k~  248 (546)
T 2zy4_A          179 AYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLK---DP-------AIKI  248 (546)
T ss_dssp             HHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGG---ST-------TEEE
T ss_pred             HHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhh---CC-------CCeE
Confidence            888776     5789999999999998888775554  467777654       2556665433   11       2567


Q ss_pred             EEEecccCCCCCccC---hHHHHHHH--HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLK--EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~--~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-  322 (483)
                      |++..++|++|.+.+   +++|+++|  ++||+++|+||+|+.+..+  +..+.+   .. .+.++++.|+||++|..| 
T Consensus       249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~---~~-~~~~i~~~S~SK~~g~~Gl  322 (546)
T 2zy4_A          249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFA---IC-PENTLLVYSFSKYFGATGW  322 (546)
T ss_dssp             EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHH---HC-GGGEEEEEESTTTTTCGGG
T ss_pred             EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHH---hC-CCCEEEEEeCccccCCCCc
Confidence            776688999999988   67788998  7899999999999865432  222222   11 235788999999998767 


Q ss_pred             --ceeeccHH-HHHHHHhc-------------C----------------------CceeecCCCcHHHHHHHHHH-HHHH
Q 011567          323 --GFCTGSAR-VVDHQRLS-------------S----------------------SGYVFSASLPPYLASAAITA-IDVL  363 (483)
Q Consensus       323 --G~i~~~~~-~~~~~~~~-------------~----------------------~~~~fs~~~~p~~~aaa~~a-l~~l  363 (483)
                        ||++++++ +++.+...             .                      ..+.+.+...+...+++..+ ...+
T Consensus       323 RiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all  402 (546)
T 2zy4_A          323 RLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALM  402 (546)
T ss_dssp             CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHH
Confidence              99988775 66655211             0                      00111222233333333222 2223


Q ss_pred             hcC----cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHHHhCC
Q 011567          364 EEN----PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWALKEDG  431 (483)
Q Consensus       364 ~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~--------~~~~~~i~~~~l~~~G  431 (483)
                      ++.    .++++.++++.+.+.+.|. + ++.+..+..+.++++.+..-.......        .....+.+.+++++.|
T Consensus       403 ~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~g  480 (546)
T 2zy4_A          403 DEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETG  480 (546)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHS
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCC
Confidence            221    2456667777777887775 3 444443445666777763100000000        0001123334556669


Q ss_pred             EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      |.+.++.....    ....+||++. ..+++++++++++|++++.+...
T Consensus       481 V~v~pG~~F~~----~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~  524 (546)
T 2zy4_A          481 IVLLPGRGFGS----NRPSGRASLA-NLNEYEYAAIGRALRKMADELYA  524 (546)
T ss_dssp             CCCEESSCTTC----SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCccccCC----CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            99998765432    1234999996 46899999999999999887653

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.84  E-value=9.1e-20  Score=184.47  Aligned_cols=320  Identities=13%  Similarity=0.113  Sum_probs=203.8

Q ss_pred             eEEEeecCCCC---C-CCCChHHHHHHHHHH-HhcCC-CCCCCCCcccChHHHHHHHHHHHhhh-C---C----CC--EE
Q 011567          110 EVVNFASANYL---G-LIGHEKLLESCTSAL-EKYGV-GSCGPRGFYGTIDVHLDCEARIAKFL-G---T----PD--SI  173 (483)
Q Consensus       110 ~~id~~s~~~l---G-~~~~p~i~~a~~~~l-~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~-g---~----e~--~i  173 (483)
                      .+|||+-+.|.   | ....+.++++.. .+ +..+. +++.   ..|.    .+|++.+++++ +   .    ++  .+
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~----~~lr~aia~~~~~~~~~~~~~~~i~i~  101 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGT----EDFSTLTQNLIFGNNSKYIEDKKICTI  101 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSC----HHHHHHHHHHHHCSSCTTTTTTCEEEE
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCc----HHHHHHHHHHHcCCCCccccccceEEE
Confidence            57999877542   2 223567777766 43 33222 1111   2333    45666666654 2   1    22  35


Q ss_pred             EecccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccC
Q 011567          174 LYSYGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       174 ~~~sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      +.++|++|+..++.+++.  + |.|++..+++..+...++..|.+++.++.   +    |+++|++.+++..        
T Consensus       102 ~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~--------  172 (405)
T 3k7y_A          102 QCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP--------  172 (405)
T ss_dssp             EEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC--------
T ss_pred             EcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC--------
Confidence            567778999999988887  8 99999999999999999999999988764   1    6788888776422        


Q ss_pred             ccEEEEEec-ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC---ccccccCCCCCceeEEEcccccc
Q 011567          245 LRRYIVVEA-VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR---GLTEHCGVPVDKIDIVTAAMGHA  317 (483)
Q Consensus       245 ~~~~iv~e~-v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~---g~~~~~~v~~~~~Di~~~s~~K~  317 (483)
                      +++++++.+ .+|++|.+.+   +++|+++|++|++++|+||+|.....+....   .+......  .+..|+++||||+
T Consensus       173 ~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~  250 (405)
T 3k7y_A          173 NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEK--NIAFSVCQSFSKN  250 (405)
T ss_dssp             SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTT--TCCEEEEEECTTT
T ss_pred             CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhc--CCcEEEEeeCCcc
Confidence            245666655 4799999988   7889999999999999999998654431000   11111121  2235888999999


Q ss_pred             ccCCC---ceee---ccHHHHHHHHhc---CCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHH
Q 011567          318 LATEG---GFCT---GSARVVDHQRLS---SSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILR  381 (483)
Q Consensus       318 lg~~G---G~i~---~~~~~~~~~~~~---~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~  381 (483)
                      ||..|   ||++   +++++++.+...   .....++ +.+.+...++.++++.       .++..+++++++++++.+.
T Consensus       251 ~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~  329 (405)
T 3k7y_A          251 MSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYS-SPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF  329 (405)
T ss_dssp             SCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98766   9964   466665443211   0011222 2244444444444432       1122345677888999999


Q ss_pred             Hhhc----cCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567          382 TGLS----DIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF  454 (483)
Q Consensus       382 ~~L~----~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~  454 (483)
                      +.|+    ++.   ++.+..+..+.++++.+..             +.+.++ +++||++.+.             -||+
T Consensus       330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L-~~~gV~v~p~-------------~Ris  382 (405)
T 3k7y_A          330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHL-KTHHIYIINN-------------GRIN  382 (405)
T ss_dssp             HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTT-TTTTEECCTT-------------SEEE
T ss_pred             HHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHH-HHCCEeecCC-------------CeEE
Confidence            9998    652   1455545455555554421             224444 6789988752             3898


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHH
Q 011567          455 VSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       455 ~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.. .++++|++++++|+++++.
T Consensus       383 ~a~-~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          383 VSG-ITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             GGG-CCTTHHHHHHHHHHHHHHC
T ss_pred             Eec-cCHHHHHHHHHHHHHHHhh
Confidence            853 6789999999999998753

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.84  E-value=4e-19  Score=182.05  Aligned_cols=322  Identities=15%  Similarity=0.110  Sum_probs=199.0

Q ss_pred             EEEeecCCCCCCCCChHHHHHHH---HHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE--EEecccHHHHHhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCT---SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS--ILYSYGLSTMFSA  185 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~---~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~--i~~~sG~~a~~~a  185 (483)
                      ++++.+..+.++ ..|...+++.   +.+..|+  ...+....|..+...++++.+++++|.+..  +++++|+.+++++
T Consensus        65 ~~~~~~~g~~~~-~~p~~v~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~  141 (438)
T 1wyu_A           65 HKAFLGGGVRSH-HVPPVVQALAARGEFLTAYT--PYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGV  141 (438)
T ss_dssp             TTCCCCSSCCCC-CCCHHHHHHHTSHHHHHCCS--CCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHH
T ss_pred             cccccCCCccCC-cCcHHHHHHHhcchhhhcCC--CCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHH
Confidence            444444444444 3465555553   3334442  222233445667889999999999998744  4566666443433


Q ss_pred             hhh-hccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCC-HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          186 IPC-FCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHND-MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       186 i~~-~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d-~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ..+ ..++||.|+++...|.++...++    ..|.+++.++..+ .-++++ +   .+       ++++|++..+ +++|
T Consensus       142 ~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~-i---~~-------~t~~v~i~~p-n~tG  209 (438)
T 1wyu_A          142 LLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE-V---GE-------EVGAVVVQNP-NFLG  209 (438)
T ss_dssp             HHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC-C---CT-------TEEEEEEESS-CTTS
T ss_pred             HHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH-h---CC-------CeEEEEEECC-CCCe
Confidence            332 24689999999999999876653    4788888887422 111222 2   11       3677777777 8899


Q ss_pred             CccChHHHHHHHHHcCcEEEEeCc-cccccccCCCCccccccCCCCCceeEEEcccccc------cc-CCCceeeccHHH
Q 011567          260 QIAPLDELIRLKEKYRFRVFLDES-NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA------LA-TEGGFCTGSARV  331 (483)
Q Consensus       260 ~i~~L~~l~~l~~k~~~~li~DEa-~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~------lg-~~GG~i~~~~~~  331 (483)
                      .+.|+++|.++|++||+++|+|.. +++|.+..     ...++     +|++++| +|.      ++ +.+||+++++++
T Consensus       210 ~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~-----~~~~g-----~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~  278 (438)
T 1wyu_A          210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP-----PGAYG-----ADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF  278 (438)
T ss_dssp             BCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCC-----HHHHT-----CSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG
T ss_pred             EEecHHHHHHHHHHcCCEEEEEechhhccCcCC-----CccCC-----CCEEEEC-CcccCCCccCCCCCeeEEEEcHHH
Confidence            999999999999999999997743 55554322     11222     3888888 564      33 334899888887


Q ss_pred             HHHHHhcC----------Cceee------------cCCC-----cHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHH
Q 011567          332 VDHQRLSS----------SGYVF------------SASL-----PPYLASAAITAIDVLEE--NPDLITKLKKNTAILRT  382 (483)
Q Consensus       332 ~~~~~~~~----------~~~~f------------s~~~-----~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~  382 (483)
                      .+.+....          ..|.+            .++.     +.+.+.++...+..+..  .+++.++.+++++++.+
T Consensus       279 ~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~  358 (438)
T 1wyu_A          279 VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA  358 (438)
T ss_dssp             GGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            76542110          11222            1111     22222222222443322  24577888999999999


Q ss_pred             hhccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE--EeecccccccCCCCCceEEEccCCC
Q 011567          383 GLSDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV--VTSKRSMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       383 ~L~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v--~~~~~~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .|++++|+++..+. ...++.+.+.  .        ...++++++++ +||.+  .+..+..      +..+|++++..+
T Consensus       359 ~L~~~~g~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~L~~-~gi~v~~~~~~~~~------~~~lRis~~~~~  421 (438)
T 1wyu_A          359 LLLEVPGVRPFTPKPFFNEFALALP--K--------DPEAVRRALAE-RGFHGATPVPREYG------ENLALFAATELH  421 (438)
T ss_dssp             HHTTSTTCEECSCSSBCSEEEEECS--S--------CHHHHHHHHHH-TTCCCCEECCTTSC------SSEEEEECCTTC
T ss_pred             HHhcCCCeEECCCCCeEEEEEEeCC--C--------CHHHHHHHHHH-CCceeccccccccC------CCeEEEEecccC
Confidence            99998899887542 1222334331  0        12357776555 59988  4333211      345999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRIS  475 (483)
Q Consensus       460 t~edi~~~~~~l~~~~  475 (483)
                      |++|+++++++|++++
T Consensus       422 t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          422 EEEDLLALREALKEVL  437 (438)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=180.01  Aligned_cols=315  Identities=14%  Similarity=0.121  Sum_probs=203.8

Q ss_pred             CChHHHHHHHHHHHhc-CCCCCCCC-Cccc--ChHHHHHHHHHHHhhhCCC--CEEEe--cccHHHHHhhhhhhccC--C
Q 011567          124 GHEKLLESCTSALEKY-GVGSCGPR-GFYG--TIDVHLDCEARIAKFLGTP--DSILY--SYGLSTMFSAIPCFCKK--G  193 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~-g~g~~~~~-~~~g--~~~~~~~l~~~La~~~g~e--~~i~~--~sG~~a~~~ai~~~~~~--g  193 (483)
                      -+++|.+++.+.+.++ +.+++... ...+  ..+...+.++.|++++|.+  ..++|  ++|++++..++..+.++  |
T Consensus        24 ~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~G  103 (377)
T 3e77_A           24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAG  103 (377)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTT
T ss_pred             CCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCC
Confidence            5689999999988764 33322110 0111  1357788999999999975  33444  57889999999888754  7


Q ss_pred             cEEEEcCCchhHHH--hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567          194 DLIVADEGVHWGIQ--NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE  266 (483)
Q Consensus       194 diI~~~~~~h~s~~--~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~  266 (483)
                      |.++.-...|++..  .-++..|..+..++.+     ++++++..+   .+       ++++|.+.+..+.+|.+.|+  
T Consensus       104 d~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i---~~-------~t~lV~~~h~et~tG~~~pi--  171 (377)
T 3e77_A          104 RCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNL---NP-------DASYVYYCANETVHGVEFDF--  171 (377)
T ss_dssp             CEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCC---CT-------TCSCEEEESEETTTTEECSS--
T ss_pred             CeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhcc---CC-------CccEEEEeCccCchheEchh--
Confidence            87665544455432  2223335455444432     333332211   11       35666676666678999998  


Q ss_pred             HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhc-------
Q 011567          267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS-------  338 (483)
Q Consensus       267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~-------  338 (483)
                         +|+++|+++++|.++++|...         +++  ++.|++++|.+|++|+.| |+++.++++.+.+...       
T Consensus       172 ---i~~~~~~~~~vD~~q~~g~~~---------id~--~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~  237 (377)
T 3e77_A          172 ---IPDVKGAVLVCDMSSNFLSKP---------VDV--SKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEY  237 (377)
T ss_dssp             ---CCCCTTCCEEEECTTTTTSSC---------CCG--GGCSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCH
T ss_pred             ---hhccCCCEEEEEcccccCCCC---------Cch--hhcCEEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhH
Confidence               588999999999999987542         233  344667889999999877 7776666543221110       


Q ss_pred             ----CCceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeec-C--CCCC-EEEEEecC
Q 011567          339 ----SSGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIAS-N--PESP-IVFLILEK  407 (483)
Q Consensus       339 ----~~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~--~~~~-i~~l~l~~  407 (483)
                          ..+..+ .+.|...+.+..++++++.+.   +.+.++.+++.++++++|++++|+.+.. +  ..++ ++.+.++.
T Consensus       238 ~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~  316 (377)
T 3e77_A          238 KVQAGNSSLY-NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGN  316 (377)
T ss_dssp             HHHHTTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESS
T ss_pred             HHHhhcCCCC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCC
Confidence                011112 234555566677889988654   5688899999999999999988887532 1  2455 58888854


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ...    +......+.+.+. ++||.+..+...       .+++|+++...+|++|||+++++|++++++
T Consensus       317 ~~~----~~~~~~~~l~~l~-~~Gi~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          317 AKG----DDALEKRFLDKAL-ELNMLSLKGHRS-------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             TTC----CHHHHHHHHHHHH-HTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCC----chhHHHHHHHHHH-HCCcEEeCCCCc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            211    1111134555443 569988654321       256999999999999999999999998875

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.83  E-value=3.9e-20  Score=188.83  Aligned_cols=324  Identities=10%  Similarity=-0.038  Sum_probs=211.4

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc-cChHHHHHHHHHHHhhhC------C--CCEEEec
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLG------T--PDSILYS  176 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~-g~~~~~~~l~~~La~~~g------~--e~~i~~~  176 (483)
                      .+.+.++||..+.+ .+..++.+.+++.+.+...+....+..... | .....+|++.+|++++      .  ++.++++
T Consensus        53 ~~~~~~i~l~~g~~-~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~  130 (427)
T 2hox_A           53 KIQGCSADVASGDG-LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (427)
T ss_dssp             ECTTCCEECCSCCC-GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             cCCCceEEecCcCC-CCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence            34556788887743 222335566676666643333210011011 2 1124678888888875      2  3455556


Q ss_pred             ccHHHHHhhhhhh--------ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEE
Q 011567          177 YGLSTMFSAIPCF--------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       177 sG~~a~~~ai~~~--------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      ++++++..++.++        .++||.|+++.++|..+...++..|.+++.+.. |+++|++.++.          ++++
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~~~~~----------~~k~  199 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANYVNVSNP----------EQYI  199 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE-EGGGGTTCSCG----------GGEE
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeecC-CHHHHHHhhcC----------CceE
Confidence            7779999999999        899999999999999999988888888776643 67777655432          2567


Q ss_pred             EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      |++..++|++|.+.+ +    +++  ++..+.|+++-    .. ...+   ..+. .+.||+++||||.+|..|   ||+
T Consensus       200 v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~----~~-~~s~---~~~~-~~~~i~~~S~SK~~g~~G~RiG~~  263 (427)
T 2hox_A          200 EMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYY----WP-HYTP---IKYK-ADEDILLFTMSKFTGHSGSRFGWA  263 (427)
T ss_dssp             EEEESSCTTTCCCCC-C----SST--TCEEEEECTTC----ST-TTSC---CCSC-BCCSEEEEEHHHHTSCGGGCCEEE
T ss_pred             EEEcCCCCCcccccH-H----HHc--CCCEEEeeccc----CC-CCCc---cccC-CCceEEEEeChhcCCCCCceEEEE
Confidence            777788889999999 4    233  56788888762    11 1111   1222 345899999999998666   999


Q ss_pred             ec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-----------c-CcHHHHHHHHHHHHHHHhhccCCCcee
Q 011567          326 TG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-----------E-NPDLITKLKKNTAILRTGLSDIHGLSI  392 (483)
Q Consensus       326 ~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-----------~-~~~~~~~l~~~~~~l~~~L~~~~~~~i  392 (483)
                      ++ ++++++.++......  ..+.++....++.++|+...           + ..+.+++++++.+++.+.|++.+|+.+
T Consensus       264 ~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  341 (427)
T 2hox_A          264 LIKDESVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSY  341 (427)
T ss_dssp             EECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEEC
T ss_pred             EECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccc
Confidence            88 588888776542221  12345555555556665421           1 124567888899999999988767654


Q ss_pred             --e------------cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC
Q 011567          393 --A------------SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA  458 (483)
Q Consensus       393 --~------------~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~  458 (483)
                        .            .+..+.++++.++..          ..+++..+++++||.+.++.....    .+..+|+++.. 
T Consensus       342 ~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~----~~~~~Ris~~~-  406 (427)
T 2hox_A          342 QELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEA----SSRYVRLSLIK-  406 (427)
T ss_dssp             CCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTS----CTTEEEEECSS-
T ss_pred             cccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCC----CCCEEEEEecC-
Confidence              1            122367788887431          113566667667999998754321    13459999974 


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 011567          459 HSEADLVKACESLKRISA  476 (483)
Q Consensus       459 ~t~edi~~~~~~l~~~~~  476 (483)
                       ++++++++++.|+++++
T Consensus       407 -~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          407 -TQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             -CHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHHHh
Confidence             89999999999988763

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.81  E-value=4.4e-18  Score=168.50  Aligned_cols=337  Identities=16%  Similarity=0.158  Sum_probs=210.6

Q ss_pred             eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccCh--HHHHHH-HHHHHhhhCCCCE-----EEecccH
Q 011567          110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--DVHLDC-EARIAKFLGTPDS-----ILYSYGL  179 (483)
Q Consensus       110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~--~~~~~l-~~~La~~~g~e~~-----i~~~sG~  179 (483)
                      +-|++..+ ||    ..|.+.++.-..+. +|.-|.+|.|.+.|..  |..+.| .++..++||.+.+     +-.-||+
T Consensus        55 ~~ieLIASEN~----~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs  130 (490)
T 3ou5_A           55 RGLELIASENF----CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS  130 (490)
T ss_dssp             HSEECCTTCCC----CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             cCceEecCCCc----CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHH
Confidence            45777665 66    56889888877775 5888999988655542  333333 3556678998865     4558999


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHh-H-------hhhcCCe--EEEecC------CCHHHHHHHHHHhhhhhhhcc
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQN-G-------LYLSRST--VVYFKH------NDMDSLRNTLERVTADNKRAK  243 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~-g-------~~~s~~~--v~~~~~------~d~~~Le~~l~~~~~~~~~~~  243 (483)
                      .||.++..++.+|||.|+.-...|+.... |       +..++..  .+.++.      -|++.++++.++..       
T Consensus       131 ~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~k-------  203 (490)
T 3ou5_A          131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-------  203 (490)
T ss_dssp             HHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcC-------
Confidence            99999999999999999977766655331 1       2233322  222221      18999999888765       


Q ss_pred             CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC
Q 011567          244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG  322 (483)
Q Consensus       244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G  322 (483)
                        .++|++-.  +..-...|.++++++|++.|.+|++|-+|-.|.+.   .|..+  + +-...|++++|.+|+| |+.|
T Consensus       204 --PklIi~G~--SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA---~g~~p--s-P~~~ADvVTtTTHKTLrGPrG  273 (490)
T 3ou5_A          204 --PRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVA---AKVIP--S-PFKHADIVTTTTHKTLRGARS  273 (490)
T ss_dssp             --CSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH---TTSSC--C-GGGTCSEEEEESSSTTCSCSC
T ss_pred             --CCeEEECC--ccCccccCHHHHHHHHhhcccEEEechhhhhhhhc---ccccC--C-ccccceEEeccccccccCCCc
Confidence              45776643  22245568999999999999999999999777653   12211  1 1123599999999999 6889


Q ss_pred             ceeeccH---------------HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhcc
Q 011567          323 GFCTGSA---------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       323 G~i~~~~---------------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      |++++++               ++.+.+...-.+...++......++-|.+..+.+. +..+..+++.+|++.|.+.|.+
T Consensus       274 G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~  353 (490)
T 3ou5_A          274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE  353 (490)
T ss_dssp             EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence            9998765               34444433322223333333444444443344343 2346788899999999999988


Q ss_pred             CCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCCCH
Q 011567          387 IHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHSE  461 (483)
Q Consensus       387 ~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~t~  461 (483)
                      . |+++.+ ..++.++.+.+.+...    +    .+-+...|++.||.+.....|.-.....+.||||..+    ..+.+
T Consensus       354 ~-G~~vvsGgTdnHlvLvDl~~~g~----t----G~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e  424 (490)
T 3ou5_A          354 R-GYSLVSGGTDNHLVLVDLRPKGL----D----GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE  424 (490)
T ss_dssp             T-TCEEGGGSCSSSEEEEECGGGTC----C----HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred             C-CCeeecCCCCceEEEEeccccCC----C----HHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCH
Confidence            5 999875 3467788888754211    1    1334556788899988665543322224678999654    35789


Q ss_pred             HHHHHHHHHHHHHHH
Q 011567          462 ADLVKACESLKRISA  476 (483)
Q Consensus       462 edi~~~~~~l~~~~~  476 (483)
                      +|++++.+.|.+++.
T Consensus       425 ~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          425 DDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988774

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.80  E-value=1.1e-17  Score=166.15  Aligned_cols=318  Identities=13%  Similarity=0.099  Sum_probs=205.4

Q ss_pred             eeEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCC-Cccc--ChHHHHHHHHHHHhhhCCC---CEEE-ecccHH
Q 011567          109 KEVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPR-GFYG--TIDVHLDCEARIAKFLGTP---DSIL-YSYGLS  180 (483)
Q Consensus       109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~-~~~g--~~~~~~~l~~~La~~~g~e---~~i~-~~sG~~  180 (483)
                      +++++|..+.   -.-+|+|.+++.+.+..+ +.+++..+ ...+  ..+...+.++.+++++|.+   +.++ .++|++
T Consensus         4 ~~~~~f~pgp---t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~   80 (361)
T 3m5u_A            4 MRKINFSAGP---STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASL   80 (361)
T ss_dssp             CCCEECCSSS---CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred             cceEeecCCC---CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHH
Confidence            3556666541   124689999998887654 33222110 0111  1357788999999999974   3444 477889


Q ss_pred             HHHhhhhhhccCCcE---EEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          181 TMFSAIPCFCKKGDL---IVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       181 a~~~ai~~~~~~gdi---I~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++..++..+. ++|.   |+.....|... ..++..|.++..++.+       +++. +  |   .+       ++++|.
T Consensus        81 a~n~~~~~~~-~~~~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l---~~-------~t~lv~  145 (361)
T 3m5u_A           81 QFAMIPMNLA-LNGVCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--F---SD-------NADYAY  145 (361)
T ss_dssp             HHHHHHHHHC-CSSCEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--C---CT-------TSSEEE
T ss_pred             HHHHHHHhcC-CCCeEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--c---CC-------CCCEEE
Confidence            9999988877 6662   33322223222 2233446666665432       2232 2  2   22       256777


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~  329 (483)
                      +.+..+.+|.+.|.     +++ +|+++++|.++++|.+.         +++  +++|++++|.+|++|+.| |+++.++
T Consensus       146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~---------id~--~~~d~~~~s~~K~~gp~G~g~l~~~~  208 (361)
T 3m5u_A          146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRK---------VDF--SNIALFYGGVQKNAGISGLSCIFIRK  208 (361)
T ss_dssp             EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSC---------CCC--TTEEEEEEETTTTSSCTTCEEEEEEH
T ss_pred             EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCC---------CCc--ccCCEEEEechhccCCCccEEEEEcH
Confidence            76666677988662     444 49999999999987542         333  468999999999999877 8888888


Q ss_pred             HHHHHHHh-cCC-----------ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567          330 RVVDHQRL-SSS-----------GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA  393 (483)
Q Consensus       330 ~~~~~~~~-~~~-----------~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~  393 (483)
                      ++.+.+.. ...           +..+ .+.|...+.+..++++++.+.   +.+.++.+++.++++++|++++++ .+.
T Consensus       209 ~~~~~~~~~~~p~~~~~~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~  287 (361)
T 3m5u_A          209 DMLERSKNKQIPSMLNYLTHAENQSLF-NTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH  287 (361)
T ss_dssp             HHHHHHHTCCCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred             HHHhhhcCCCCCceeehHHHhhcCCCC-CCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence            88766543 111           1111 234555666777889988654   567888999999999999998656 443


Q ss_pred             cC--CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          394 SN--PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       394 ~~--~~~-~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      .+  ..+ .++.+.+++..+   .+    .++.. .|+++||.+..+...       ..++|+++...+|++|||+++++
T Consensus       288 ~~~~~rs~~ivsf~~~~~~~---~~----~~~~~-~L~~~gI~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~a  352 (361)
T 3m5u_A          288 ADKKDRSLMNVSFNIAKNKD---LE----PLFVK-EAEEAGMIGLKGHRI-------LGGIRASIYNALNLDQVKTLCEF  352 (361)
T ss_dssp             SCGGGBCSSEEEEEESSCTT---HH----HHHHH-HHHHTTEECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHH
T ss_pred             CCHHHcCCeEEEEECCCchh---hh----HHHHH-HHHHCCCEEecCCCc-------cCeEEEEccCCCCHHHHHHHHHH
Confidence            22  234 478888753100   11    23554 356679998654321       24599999999999999999999


Q ss_pred             HHHHHHH
Q 011567          471 LKRISAV  477 (483)
Q Consensus       471 l~~~~~~  477 (483)
                      |+++.++
T Consensus       353 l~~~~~~  359 (361)
T 3m5u_A          353 MKEFQGK  359 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.78  E-value=7.5e-19  Score=176.02  Aligned_cols=318  Identities=11%  Similarity=0.061  Sum_probs=193.5

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCC----CCCcccChHHHHHHHHHHHhhhCCCC---EEEe-cccHH
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCG----PRGFYGTIDVHLDCEARIAKFLGTPD---SILY-SYGLS  180 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~----~~~~~g~~~~~~~l~~~La~~~g~e~---~i~~-~sG~~  180 (483)
                      .|+|-+....    -+|+|.+++.+.+..+ +.+++.    .+. .-..+...+.++.+++++|.++   .+++ ++|++
T Consensus        28 ~yl~~agpt~----~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~  102 (386)
T 3qm2_A           28 VFNFSSGPAM----LPAEVLKLAQQELCDWHGLGTSVMEISHRG-KEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRG  102 (386)
T ss_dssp             CEECCSSSCC----CCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTH
T ss_pred             CccccCCCCC----CCHHHHHHHHHHHHhccccCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH
Confidence            4555444322    4689999988877653 333221    111 0012456789999999999752   4453 68899


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHH--HhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGI--QNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~--~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++..++..+.++||.++.-...|++.  ...++..| .+..++.+        |+++++..+.   +       ++++|.
T Consensus       103 a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~-------~t~lV~  171 (386)
T 3qm2_A          103 QFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---D-------NAAYLH  171 (386)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC---T-------TCSCEE
T ss_pred             HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC---C-------CCcEEE
Confidence            99999998888888654322223332  12223345 56555432        2344433221   1       356777


Q ss_pred             EecccCCCCCc-cChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567          251 VEAVYQNSGQI-APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS  328 (483)
Q Consensus       251 ~e~v~~~~G~i-~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~  328 (483)
                      +..+.+.+|.+ .|+++|.     +|+++++|.++++|.+.         .++  ++.|++++|.+|++|+.| |++..+
T Consensus       172 ~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~p---------idv--~~~~~~~~s~hK~lGP~G~g~l~v~  235 (386)
T 3qm2_A          172 YCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAP---------LDV--SRYGVIYAGAQKNIGPAGLTLVIVR  235 (386)
T ss_dssp             ECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCTTEEEEEEE
T ss_pred             EECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCC---------CCc--cccCEEEEecccccCCCccEEEEEC
Confidence            77777778995 8998885     89999999999987542         233  334566789999999877 887777


Q ss_pred             HHHHHHHHh-----------cCCceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567          329 ARVVDHQRL-----------SSSGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA  393 (483)
Q Consensus       329 ~~~~~~~~~-----------~~~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~  393 (483)
                      +++.+.+..           ...+..+. +.|.....+..++++++.+.   +++.++.+++.+++++.|+++ ++ ...
T Consensus       236 ~~~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~  313 (386)
T 3qm2_A          236 EDLLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRND  313 (386)
T ss_dssp             GGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECC
T ss_pred             HHHHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence            665322111           01112222 23434455566778877542   567888999999999999887 54 221


Q ss_pred             --cCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          394 --SNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       394 --~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                        ....++ ++.+.+++.    ..+    .++... |+++||.+..+...       .+++|+++...+|++|||+++++
T Consensus       314 ~~~~~rs~~iv~f~~~~~----~~~----~~~~~~-L~~~gI~~~~g~~~-------~~~iRiS~~~~~t~edId~l~~~  377 (386)
T 3qm2_A          314 VAQANRSRMNVPFQLADN----TLD----KVFLEE-SFAAGLHALKGHRV-------VGGMRASIYNAMPIEGVKALTDF  377 (386)
T ss_dssp             BCGGGBCSSEEEEEESSG----GGH----HHHHHH-HHHTTEECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHH
T ss_pred             CCHHHcCceEEEEECCCc----ccc----HHHHHH-HHHCCCEEeCCCCC-------cCeEEEEcCCCCCHHHHHHHHHH
Confidence              112344 788888531    011    234554 56679987654322       24599999999999999999999


Q ss_pred             HHHHHHH
Q 011567          471 LKRISAV  477 (483)
Q Consensus       471 l~~~~~~  477 (483)
                      |+++.++
T Consensus       378 l~~~~~~  384 (386)
T 3qm2_A          378 MIDFERR  384 (386)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.75  E-value=3.4e-17  Score=165.82  Aligned_cols=311  Identities=9%  Similarity=0.033  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC----CC--EEEecccHHHHHhh----hhhhccCCc
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----PD--SILYSYGLSTMFSA----IPCFCKKGD  194 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~----e~--~i~~~sG~~a~~~a----i~~~~~~gd  194 (483)
                      |.|++|....++.-......  ...|.    .+|++.+++++ |.    +.  .+...+|+.|+..+    .+++..+||
T Consensus        65 ~~Vk~A~~~~~~~~~~~~Y~--p~~G~----p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd  138 (420)
T 4h51_A           65 RVVRKAEQLLLDMNLDYEYL--PISGY----QPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT  138 (420)
T ss_dssp             HHHHHHHHHHHHTTCCCCCC--CTTCC----HHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred             HHHHHHHHHHhcCCCCCCCC--CcCCh----HHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence            66777766666542221111  13343    45666666653 32    12  23346666665444    456678999


Q ss_pred             EEEEcCCchhHHHhHhhhcCCe-EEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---
Q 011567          195 LIVADEGVHWGIQNGLYLSRST-VVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---  263 (483)
Q Consensus       195 iI~~~~~~h~s~~~g~~~s~~~-v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---  263 (483)
                      .|+++++++..+...++..|.+ +..+++.       |.+.+.+.++...+       .+++++....+|+||...+   
T Consensus       139 ~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~-------~~~vll~~~p~NPtG~~~~~~~  211 (420)
T 4h51_A          139 PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPD-------GSVFILHQCAHNPTGVDPSQEQ  211 (420)
T ss_dssp             CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCS-------SCEEEEESSSCTTTCCCCCHHH
T ss_pred             EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCC-------CcEEEEeCCCCCCCCCCCCHHH
Confidence            9999999999988888888875 4444332       56666666655433       4678888888999999988   


Q ss_pred             hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH-----
Q 011567          264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH-----  334 (483)
Q Consensus       264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~-----  334 (483)
                      +++|+++|+++++++|.||+|.....|...... ......+....-+++.|+||+++..|   |++++.....+.     
T Consensus       212 ~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~  291 (420)
T 4h51_A          212 WNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVK  291 (420)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHH
Confidence            799999999999999999999865544210000 00000011122477899999998766   887654332221     


Q ss_pred             --HHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhhccCCC----ceeecCCCCCEE
Q 011567          335 --QRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDIHG----LSIASNPESPIV  401 (483)
Q Consensus       335 --~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~L~~~~~----~~i~~~~~~~i~  401 (483)
                        +.... ...++ +.|...+.++...+..       .++...++++++++++.|.+.|+++ |    +....++.+.+.
T Consensus       292 ~~l~~~~-r~~~s-~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~-g~~~~~~~i~~q~GmF~  368 (420)
T 4h51_A          292 SVMDSLI-REEYT-CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL-QTPGSWEHVINQIGMFS  368 (420)
T ss_dssp             HHHHHHH-HTTTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCTHHHHCCSSEE
T ss_pred             HHHHHhh-hcccC-cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCeecCCCceEE
Confidence              11111 11122 2234444444333321       1122356778888888888888775 3    222223345444


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR  480 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~  480 (483)
                      ++.+.        .     +.++ .|+++||++.+             +-||++.. .|++.|++++++|.++++++.+
T Consensus       369 ~~gls--------~-----e~v~-~L~e~~Vy~~~-------------~gRis~Ag-l~~~ni~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          369 FLGLS--------K-----AQCE-YCQNHNIFITV-------------SGRANMAG-LTHETALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             ECCCC--------H-----HHHH-HHHHTTEECCT-------------TCEEEGGG-CCHHHHHHHHHHHHHHHC----
T ss_pred             ecCcC--------H-----HHHH-HHHhCCEEEcC-------------CCEEEecc-CCHHHHHHHHHHHHHHHHHhhc
Confidence            43331        1     1234 46678998753             24999854 7899999999999999988654

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.71  E-value=2.2e-15  Score=151.92  Aligned_cols=386  Identities=11%  Similarity=0.076  Sum_probs=215.1

Q ss_pred             CCCCCCCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChH-HHHHHHHHH
Q 011567           58 KPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEK-LLESCTSAL  136 (483)
Q Consensus        58 ~~~~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~-i~~a~~~~l  136 (483)
                      +-++.-+++++|..+++++...+..-      .....-+-.       -+||-+=.+++..|+|+ .|+- +..   +.+
T Consensus        22 ~~p~~g~~~~~i~~~l~~~~~~d~~~------~~~~~~~ge-------regrv~~~~~~~r~~g~-~hg~~~~~---d~l   84 (450)
T 3bc8_A           22 KCPEDGWDESTLELFLHELAVMDSNN------FLGNCGVGE-------REGRVASALVARRHYRF-IHGIGRSG---DIS   84 (450)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHTBGGG------CTTCCCCSS-------CCCCCSCHHHHHHTTTC-CSCBCC--------
T ss_pred             cCCccCCCHHHHHHHHHHHhhCCCCc------cccccccCc-------ccceEecccccCCccce-ecchhHHH---HHH
Confidence            45566899999999888865422110      000000100       13454555555577787 3432 111   222


Q ss_pred             HhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE---EEecccHHHHHhhhhhhcc----CCcEEEEcCCchhHHHhH
Q 011567          137 EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS---ILYSYGLSTMFSAIPCFCK----KGDLIVADEGVHWGIQNG  209 (483)
Q Consensus       137 ~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~---i~~~sG~~a~~~ai~~~~~----~gdiI~~~~~~h~s~~~g  209 (483)
                      .... ...+   ..+...+...+..++.+++|.+++   +++++++..+.+++.+.++    +++.|++.+..|.|+.++
T Consensus        85 ~~~~-~~~~---~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kA  160 (450)
T 3bc8_A           85 AVQP-KAAG---SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS  160 (450)
T ss_dssp             --CC-SBHH---HHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH
T ss_pred             HhCc-cccC---CcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHH
Confidence            2211 1111   111234667888888888897643   5566666344333333322    378888889999999999


Q ss_pred             hhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe
Q 011567          210 LYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD  281 (483)
Q Consensus       210 ~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D  281 (483)
                      +.+.|...++++.        -|++.|++.+++...+      .+.+|++.+.+...|.+.|+++|+++|++||+++++|
T Consensus       161 l~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~------~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD  234 (450)
T 3bc8_A          161 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE------HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN  234 (450)
T ss_dssp             HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG------GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC------CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE
Confidence            9999998776643        1899999999876422      3677777777766678999999999999999999999


Q ss_pred             CccccccccCCCCccc-cccCCCCCceeEEEcccccccc-CCCc-eee-ccHHHHHHHHhcCCceeecCCCcHH-HHHHH
Q 011567          282 ESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALA-TEGG-FCT-GSARVVDHQRLSSSGYVFSASLPPY-LASAA  356 (483)
Q Consensus       282 Ea~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg-~~GG-~i~-~~~~~~~~~~~~~~~~~fs~~~~p~-~~aaa  356 (483)
                      ++|+... .. ...+. +.+..  ..+|+++.|.+|++. +.|| ++. .+++..+.....   |....+.+|. .+.+.
T Consensus       235 ~A~G~~~-~~-~~~l~~~a~~~--~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~---~~g~~s~SpsL~l~~~  307 (450)
T 3bc8_A          235 NAYGLQS-SK-CMHLIQQGARV--GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM---YPGRASASPSLDVLIT  307 (450)
T ss_dssp             CTTTTTC-HH-HHHHHHHHHHH--SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH---SCSCBCSHHHHHHHHH
T ss_pred             CCCchhh-hh-hHhHHHHHhcc--cCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH---hhcCCcccHHHHHHHH
Confidence            9997421 11 01111 11111  245899999999997 3354 443 355555554332   1111122343 22222


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhC--
Q 011567          357 ITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKED--  430 (483)
Q Consensus       357 ~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~--  430 (483)
                      +.++ -.+...+.+++..++.+++++.|++++   |..+...+..++ ..+.+..-....+.|   ..++.-.....+  
T Consensus       308 l~~~-G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D---~tkl~i~~~~~g~s  383 (450)
T 3bc8_A          308 LLSL-GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKA---VTQLGSMLFTRQVS  383 (450)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCH---HHHHHHHHHHTTCC
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCC---CceeEEEecCCCCc
Confidence            2221 011123455555788889999998776   776654332222 122232111000112   123333222221  


Q ss_pred             CEEEEe------------ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          431 GVFVVT------------SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       431 Gv~v~~------------~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      |.-+.+            ..|...-.......|-+..+...|++|+++++++|+++.++..++
T Consensus       384 G~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          384 GARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             SCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            333320            111110001112347788899999999999999999998766443

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.68  E-value=7.2e-15  Score=146.28  Aligned_cols=297  Identities=11%  Similarity=0.100  Sum_probs=180.9

Q ss_pred             hCCCC---EEEecccHHHHHhhhhhhccC----CcEEEEcCCchhHHHhHhhhcCCeEEEecC---C-----CHHHHHHH
Q 011567          167 LGTPD---SILYSYGLSTMFSAIPCFCKK----GDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N-----DMDSLRNT  231 (483)
Q Consensus       167 ~g~e~---~i~~~sG~~a~~~ai~~~~~~----gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~-----d~~~Le~~  231 (483)
                      +|.+.   .+++++++.++.+++.+.+++    +|.|++++..|.|+.+++.++|...++++.   .     |++++|+.
T Consensus       129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~a  208 (501)
T 3hl2_A          129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAK  208 (501)
T ss_dssp             TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHH
T ss_pred             cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHH
Confidence            37553   344466666777666666553    489999999999999999999998877653   1     78999999


Q ss_pred             HHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEE
Q 011567          232 LERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIV  310 (483)
Q Consensus       232 l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~  310 (483)
                      +++...+      ...+|++.+.+...+.+.|+++|+++|++||+++++||+|+.-. .. ...+. +.+..  ..+|++
T Consensus       209 I~e~ga~------~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~-~~-~~~lp~sA~~~--GrAD~v  278 (501)
T 3hl2_A          209 VQELGPD------CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS-SK-CMHLIQQGARV--GRIDAF  278 (501)
T ss_dssp             HHHHCGG------GEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTC-HH-HHHHHHHHHHH--SCCCEE
T ss_pred             HHhcCCC------cEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhh-hh-hhhhHHHHHhc--CCCcEE
Confidence            9887432      35666666555444577899999999999999999999997532 10 00111 11111  125999


Q ss_pred             Ecccccccc-CCCceee--ccHHHHHHHHhcCCceeecCCCcHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567          311 TAAMGHALA-TEGGFCT--GSARVVDHQRLSSSGYVFSASLPPYL-ASAAITAIDVLEENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       311 ~~s~~K~lg-~~GG~i~--~~~~~~~~~~~~~~~~~fs~~~~p~~-~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      +.|.+|.+- ..||.++  .+++.++.+...-.   -..+..|.. .-+++..+- .+...+++++..++.++|+++|++
T Consensus       279 VqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP---Gr~S~Spsldl~~tLL~lG-r~Gy~~ll~e~~ela~~L~~~L~~  354 (501)
T 3hl2_A          279 VQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP---GRASASPSLDVLITLLSLG-SNGYKKLLKERKEMFSYLSNQIKK  354 (501)
T ss_dssp             EEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC---SCBCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccccceeecCceEEEeCCHHHHHHHHHhCC---CCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999994 4466443  35566665532211   111223333 222221111 012256888889999999999987


Q ss_pred             CC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCE---EEEe-ec-----------ccccccCCC
Q 011567          387 IH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGV---FVVT-SK-----------RSMLDKCRL  447 (483)
Q Consensus       387 ~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv---~v~~-~~-----------~~~~~~~~~  447 (483)
                      +.   |-++...+..|| +.+.+.....   ........+-..++. ++|   -+.+ ..           |.+-....+
T Consensus       355 la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~  430 (501)
T 3hl2_A          355 LSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFT-RQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP  430 (501)
T ss_dssp             HHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHH-TTCCSCEEECTTCCEEETTEEESSTTTTSSCCS
T ss_pred             HHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHh-cCCCcceeecCCCceEECCeeecCcccCCCCCC
Confidence            53   444544444554 4445533211   111123344443333 344   2221 11           111001112


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          448 PVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      .+-+-++....++++|||.+++.|++++.++.++
T Consensus       431 ~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~  464 (501)
T 3hl2_A          431 CAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE  464 (501)
T ss_dssp             SCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            2448888888999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	483
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	1e-68
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	6e-57
d2bwna1	396	c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho	5e-51
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	5e-18
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	3e-17
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-15
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	7e-11
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-10
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	3e-07
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	2e-06
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	4e-06
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	5e-05
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	3e-04
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	4e-04

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score =  223 bits (568), Expect = 1e-68
 Identities = 109/385 (28%), Positives = 181/385 (47%), Gaps = 20/385 (5%)

Query: 92  EPPVLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
           E  ++ SA     T+  G  V+NF + NYLGL  H  L+ +  + ++ +G G    R   
Sbjct: 27  EERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86

Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
           GT D H + E ++A FLG  D+ILYS                 D I++D   H  I +G+
Sbjct: 87  GTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV 146

Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
            L ++    + +NDM  L   L+       R       I  + V+   G IA L  +  L
Sbjct: 147 RLCKAKRYRYANNDMQELEARLKEAREAGAR----HVLIATDGVFSMDGVIANLKGVCDL 202

Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA 329
            +KY   V +D+S++ G +G +GRG  E+C V   ++DI+T  +G AL    GG+     
Sbjct: 203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARK 261

Query: 330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG 389
            VV+  R  S  Y+FS SL P + +A+I  ++++E   +L  +L  N    R  +S    
Sbjct: 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF 321

Query: 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV 449
               +  +  I+ ++L         D  + +  A   L+++G++V      ++ K +   
Sbjct: 322 TLAGA--DHAIIPVML--------GDAVVAQKFAR-ELQKEGIYVTGFFYPVVPKGQ--A 368

Query: 450 GIRLFVSAAHSEADLVKACESLKRI 474
            IR  +SAAH+   + +A E+  RI
Sbjct: 369 RIRTQMSAAHTPEQITRAVEAFTRI 393

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score =  191 bits (486), Expect = 6e-57
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 33/389 (8%)

Query: 92  EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
               +   AG   +   ++ +NF+S +YLGL  H +++ +     E++G+GS G     G
Sbjct: 21  RRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80

Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
              VH   E  +A++LG   ++L+  G +   + I     K D I AD   H  +     
Sbjct: 81  YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS 140

Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
           LS S +  F HND+  L   L              + +V E V+   G  APL E+ ++ 
Sbjct: 141 LSPSQLRRFAHNDVTHLARLLASPCPGQ-------QMVVTEGVFSMDGDSAPLAEIQQVT 193

Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
           +++   + +D+++  GV+G  GRG      V  + + +     G      G     S+ V
Sbjct: 194 QQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVT---FGKGFGVSGAAVLCSSTV 250

Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
            D+    +   ++S S+PP  A A   ++ V+  +     + K    I R          
Sbjct: 251 ADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF 310

Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV-- 449
             ++  S I  LI+         D      +A+  L++ G +V           R P   
Sbjct: 311 TLADSCSAIQPLIV--------GDNSRALQLAE-KLRQQGCWVTAI--------RPPTVP 353

Query: 450 ----GIRLFVSAAHSEADLVKACESLKRI 474
                +RL ++AAH   D+ +  E L   
Sbjct: 354 AGTARLRLTLTAAHEMQDIDRLLEVLHGN 382

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

 Score =  176 bits (446), Expect = 5e-51
 Identities = 94/397 (23%), Positives = 158/397 (39%), Gaps = 40/397 (10%)

Query: 94  PVLESAAGPH-------TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP 146
             +E   G              +++  +   +YLG+  H  +L +   ALE  G GS G 
Sbjct: 23  IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGT 82

Query: 147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHW 204
           R   GT   H   EA IA       ++++S   +   + +        G +I +D   H 
Sbjct: 83  RNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHA 142

Query: 205 GIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264
            +  G+  +      F+HND+  LR                 + I  E+VY   G   P+
Sbjct: 143 SMIEGIKRNAGPKRIFRHNDVAHLREL------IAADDPAAPKLIAFESVYSMDGDFGPI 196

Query: 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGF 324
            E+  + E++    ++DE ++ G+ G  G G+ E  G+   +IDI    +  A    GG+
Sbjct: 197 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGY 255

Query: 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASA--AITAIDVLEENPDLITKLKKNTAILRT 382
              SAR+VD  R  + G++FS SLPP +A+   A  A     E   L    + +  +L+ 
Sbjct: 256 IAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKM 315

Query: 383 GLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TS 437
            L    G+ I  +  S IV +++         D    + ++D  L + GV+V      T 
Sbjct: 316 RLKA-LGMPIIDH-GSHIVPVVI--------GDPVHTKAVSDMLLSDYGVYVQPINFPTV 365

Query: 438 KRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
            R      RL    R   S  H    +     ++  +
Sbjct: 366 PR---GTERL----RFTPSPVHDLKQIDGLVHAMDLL 395

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 83.3 bits (204), Expect = 5e-18
 Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 35/365 (9%)

Query: 127 KLLESCTSALEKYGVGS------CGPR-GFYGTIDVHLDCEARIAKFLGTPDSILYSYGL 179
           KL E    AL ++G G          R     T  +H     ++ KFLG   + + +   
Sbjct: 13  KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAR 72

Query: 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADN 239
              F+ +    KK   +V DE  H+        +   +      D      T E      
Sbjct: 73  EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTI 132

Query: 240 KRAKKLRRYIVVEAVYQNS--GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT 297
           +  KK    ++    Y +   G +  + ++ ++  +Y   + ++ + + G +        
Sbjct: 133 EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-------- 184

Query: 298 EHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQRLSSSGYVFSAS------LPP 350
                 +    IV +      A+   G         +     S  Y              
Sbjct: 185 PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARG 244

Query: 351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-SPIVFLILEKST 409
                 + +   + E      +  +        +  +    +  NP    ++F   E   
Sbjct: 245 ATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLY 304

Query: 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 469
              K        +    LK   +  +                    +   S+ ++     
Sbjct: 305 EISKKAKGGRFFLYR-ELKSRKIHGIK---------PGLTRYFKLSTYGLSDEEVDYVLN 354

Query: 470 SLKRI 474
           + K I
Sbjct: 355 AFKEI 359

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 80.6 bits (197), Expect = 3e-17
 Identities = 41/370 (11%), Positives = 91/370 (24%), Gaps = 41/370 (11%)

Query: 113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
            F+S N  G     ++ ++                  YGT ++    + +  +       
Sbjct: 6   GFSSDNIAGA--SPEVAQALVKHSSGQAGP-------YGTDELTAQVKRKFCEIFERDVE 56

Query: 173 ILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST--------VVYFKHN 223
           +     G +     +         I      H            +               
Sbjct: 57  VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL 116

Query: 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDES 283
           D+  LR        D    +     I       +   +  ++ +  + +     + +D S
Sbjct: 117 DIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176

Query: 284 NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYV 343
                L   G    E          +   A  + +         +  +            
Sbjct: 177 RFANALVSLGCSPAEMTWKA-GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAG 235

Query: 344 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL 403
             +S   +L++     +   +       K       L  GL  + G+ +    E+ I+F 
Sbjct: 236 HLSSKMRFLSAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC 294

Query: 404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 463
            L+               + D AL + G      +         P  +R   S A +  D
Sbjct: 295 RLD-------------SAMID-ALLKAGFGFYHDRWG-------PNVVRFVTSFATTAED 333

Query: 464 LVKACESLKR 473
           +      ++ 
Sbjct: 334 VDHLLNQVRL 343

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 40/329 (12%), Positives = 92/329 (27%), Gaps = 24/329 (7%)

Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG 209
           YG      + E   A+  G   ++    G      +I    ++GD ++ +   H      
Sbjct: 30  YGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEV 89

Query: 210 LYLSRSTVVYFKHNDMDSLRNTL----ERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLD 265
             ++  + V        +         + +   N    +     +     ++ G++ PL+
Sbjct: 90  GAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLE 149

Query: 266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFC 325
            +  +    +        +   +   S                ++        A  G   
Sbjct: 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVV 209

Query: 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS 385
            G    ++  R +                 A   I  L +  D + +  +N   L   L 
Sbjct: 210 VGDRDFIERARKARKMLGGGMRQA---GVLAAAGIIALTKMVDRLKEDHENARFLALKLK 266

Query: 386 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC 445
           +I       + ++ +V L  +    +            + AL+  GV       +     
Sbjct: 267 EIGYSVNPEDVKTNMVILRTDNLKVNAH-------GFIE-ALRNSGVLANAVSDT----- 313

Query: 446 RLPVGIRLFVSAAHSEADLVKACESLKRI 474
                IRL      S  D+ +A    +++
Sbjct: 314 ----EIRLVTHKDVSRNDIEEALNIFEKL 338

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 52/364 (14%), Positives = 91/364 (25%), Gaps = 42/364 (11%)

Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSA-IPCFCKKGDLIVADEGVHWGIQNGLYL 212
              +  E   A+      +     G S   +         GDL++ D   H  + N    
Sbjct: 66  GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA 125

Query: 213 SRSTVVYFKHNDMDSLRNTLERVTADNKRA---------------KKLRRYIVVEAVYQN 257
                  +   + +          +D                    K    + V  +   
Sbjct: 126 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTY 185

Query: 258 SGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV----PVDKIDIVT-- 311
            G I    E+++        +  D +             +    +    P D   IV   
Sbjct: 186 DGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQS 245

Query: 312 -------AAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYL---ASAAITAID 361
                   +    +  +     G  R  DH+  ++S  +F ++ P Y    A     A+ 
Sbjct: 246 VHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ 305

Query: 362 VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE--SPIVFLILEKSTGSMKNDLQLL 419
             E    L   L   T   R  L     +     P   +   +   +    +   D    
Sbjct: 306 EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 365

Query: 420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479
           E  A W   E         +  +D    P    L     + E    +       I A  L
Sbjct: 366 EKGAKWHAYEG----YGDNQYYVD----PNKFMLTTPGINPETGDYEDFGVPATIVANYL 417

Query: 480 RDRN 483
           RD  
Sbjct: 418 RDHG 421

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 50/366 (13%), Positives = 99/366 (27%), Gaps = 32/366 (8%)

Query: 113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS 172
           +F +   +G+  H K+L+           G       YG           I + L  PD+
Sbjct: 3   SFVNDYSVGM--HPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDA 53

Query: 173 ILY--SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRN 230
            ++  S G  T   A     +  + ++A +  H        +  +          D    
Sbjct: 54  DVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLR 113

Query: 231 TLERVTADNKRAKKLR-RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVL 289
             +  +A ++   +      +V              + +           L        L
Sbjct: 114 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL 173

Query: 290 GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLP 349
             +         +           +G   A               +  +        +L 
Sbjct: 174 ASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALM 233

Query: 350 PYLASAAITAIDVLEENPDL-ITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
                  I    ++++N    +       A +     +  G+ +A    S  +F ILE  
Sbjct: 234 AKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE-- 291

Query: 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC 468
             +M  +L    D+      +DG                   +RL  S A  E +  +  
Sbjct: 292 -NTMIAELNNDFDMYTVEPLKDG----------------TCIMRLCTSWATEEKECHRFV 334

Query: 469 ESLKRI 474
           E LKR+
Sbjct: 335 EVLKRL 340

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 40/351 (11%), Positives = 84/351 (23%), Gaps = 40/351 (11%)

Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD---------------EGVHW 204
           E  + +  G    +    G            K G  +  +                 V  
Sbjct: 81  EKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDI 140

Query: 205 GIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264
                   +   + +    D++ L   ++   A+N     L   + V         +A +
Sbjct: 141 VRDEAHD-ASLNLPFKGDIDLNKLATLIKEKGAENIAYICLA--VTVNLAGGQPVSMANM 197

Query: 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI--------DIVT--AAM 314
             +  +   Y  ++F D +               +  V +  I        D  T     
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257

Query: 315 GHALATEGGFCTGSARVVDHQR-LSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITK 372
              +   G  C     +    + L        +            AI + E    + I  
Sbjct: 258 DCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEH 317

Query: 373 LKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV 432
             K    L   L +     I        VFL   +    +  D    + +A     E GV
Sbjct: 318 RVKQVRYLGDKLREAGV-PIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGV 376

Query: 433 FVVTSKRSMLDKCRLPVGIRLFV---------SAAHSEADLVKACESLKRI 474
             +        + +                     ++ A +    + + ++
Sbjct: 377 RSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 56/375 (14%), Positives = 114/375 (30%), Gaps = 26/375 (6%)

Query: 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166
            G +V +F++         + ++E+  +ALE+         G     +       R    
Sbjct: 28  EGIDVCSFSAGE-PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGL 86

Query: 167 LGTPDSILYSYGLS-TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
               D+IL + G   ++F+ +    + GD ++            + L+  T V       
Sbjct: 87  CYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVE 146

Query: 226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE---KYRFRVFLDE 282
              + + E++        KL   +V       +G +   DE+  + +   +    V  DE
Sbjct: 147 TQFKVSPEQIRQAITPKTKL---LVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE 203

Query: 283 SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSS 339
                +   +             +  +V +      A  G   GF  G   +V       
Sbjct: 204 IYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQ 263

Query: 340 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
                +        + A       +   +++    +    +   L+ + GL       + 
Sbjct: 264 GHSTSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322

Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459
            +F  + K+  S         D     L +  V  V       D C     IRL  S A 
Sbjct: 323 YMFPSIAKTGRSS-------LDFCSELLDQHQVATVPGAAFGADDC-----IRL--SYAT 368

Query: 460 SEADLVKACESLKRI 474
               + +  E L++ 
Sbjct: 369 DLDTIKRGMERLEKF 383

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 61/425 (14%), Positives = 124/425 (29%), Gaps = 77/425 (18%)

Query: 92  EPPVLESAAGPHTI-ISGKEVVNFASANYLGLIGH--EKLLESCTSALEKYGVGSCGPRG 148
           +P V +     +   + G   +++       + GH   +++E+   A+EK          
Sbjct: 34  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS------- 86

Query: 149 FYGTIDVHLDCEARIAKFLGTPDSILYS-YGLSTMFSAIPCFCK--KGDLIVADEGVHWG 205
           F     +       +   + + + + +   G     + +         D I+  EG + G
Sbjct: 87  FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHG 146

Query: 206 IQNGL--------------------YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKL 245
             +                        + +  +   +ND+++++                
Sbjct: 147 HADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAE-NPGEIAG--- 202

Query: 246 RRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG 301
              +++E +  NSG I P    L+ L  +  ++   +  DE  +         G     G
Sbjct: 203 ---VILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT---------GFRIAYG 250

Query: 302 VPVDKIDIVTAAMGHALATEGGFC----TGSARVVDHQRLSSSGYVFSASLPPYLASAAI 357
              +K  +            GG       G   ++     +   Y         LA  A 
Sbjct: 251 GVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310

Query: 358 TAIDVLEENPDLITKLKKNTAILRTGLSDI-----HGLSIASNPESPIVFLILEKSTG-- 410
                L   P     L + T  L  GL  I     H             F          
Sbjct: 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYE 370

Query: 411 -SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 469
            + K+DLQ         L++ G+++  S+               F S AH+E D+     
Sbjct: 371 DAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF-----------EAGFTSLAHTEEDIDATLA 418

Query: 470 SLKRI 474
           + + +
Sbjct: 419 AARTV 423

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 63/416 (15%), Positives = 120/416 (28%), Gaps = 53/416 (12%)

Query: 93  PPVLESAAGPHTI-ISGKEVVNFASANYLGLIGH--EKLLESCTSALEKYGVGSCGPRGF 149
           P   + A       + G+E ++FA    +   GH   K++ +  + L+K          F
Sbjct: 23  PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC-----F 77

Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKG------DLIVADEGVH 203
                        I       D    +  ++T   A+    K           +A  G +
Sbjct: 78  QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAY 137

Query: 204 WGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY--------------- 248
            G  +        V  +         +    +                            
Sbjct: 138 HGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 197

Query: 249 ----IVVEAVYQNSGQI----APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
               IV+E V    G      A +  L  L +++   +  DE    G          E  
Sbjct: 198 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ-SGAGRTGTLFAMEQM 256

Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
           GV     D+ T A   A        TG A V+D       G  ++ +  P    AA+  +
Sbjct: 257 GV---APDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGN--PIACVAALEVL 311

Query: 361 DVLEENPDLITKLKKNTAIL--RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL 418
            V E+   L         +      +++ H           ++ + L +     K D +L
Sbjct: 312 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKL 371

Query: 419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
             +I   A  + G+ +++              +R+ V     +A + +  E + + 
Sbjct: 372 TAEIVARARDK-GLILLSCGPY-------YNVLRILVPLTIEDAQIRQGLEIISQC 419

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 148 GFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGI 206
           G+  T   + + EA   +  G   ++  S   + M  A+      +GD ++         
Sbjct: 25  GWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST 84

Query: 207 QNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE 266
            N + L  +  V     D D+L  T E +           + I+        G  A LD 
Sbjct: 85  LNMIVLLGANPVMV-DVDRDTLMVTPEHI---EAAITPQTKAIIPVHYA---GAPADLDA 137

Query: 267 LIRLKEKYRFRVFLDESNSFG 287
           +  L E+Y   V  D +++ G
Sbjct: 138 IYALGERYGIPVIEDAAHATG 158

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
           EAR+A   G    +  + G+  + S +    + GD ++    ++      L+        
Sbjct: 65  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124

Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
              +   +    LE       R       I  E+    +  +A +  + ++  K+   V 
Sbjct: 125 KLRHVDMADLQALEAAMTPATRV------IYFESPANPNMHMADIAGVAKIARKHGATVV 178

Query: 280 LDESNSFGVLGR 291
           +D +     L R
Sbjct: 179 VDNTYCTPYLQR 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	483
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.95
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.94
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.94
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.94
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.94
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.93
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.93
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.93
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.93
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.92
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.92
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.91
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.91
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.91
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.91
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.91
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.9
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.9
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.89
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.88
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.88
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.88
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.87
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.86
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.86
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.86
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.86
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.86
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.85
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.84
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.84
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.84
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.83
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.83
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.83
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.83
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.82
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.82
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.81
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.81
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.81
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.8
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.8
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.8
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.79
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.79
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.79
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.79
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.79
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.78
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.77
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.77
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.76
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.76
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.76
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.76
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.74
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.74
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.68
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.67
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.64
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.56
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.53
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.47
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.36
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.21

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=3.8e-63  Score=494.43  Aligned_cols=379  Identities=24%  Similarity=0.391  Sum_probs=335.7

Q ss_pred             HHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-------ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCC
Q 011567           69 IDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-------ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-------~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      +++.++++..+.+..        ..+.+++..|.+..       .++++++||+|+||||+..||++++++.+++++||+
T Consensus         6 ~~~~l~~l~~~g~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~   77 (396)
T d2bwna1           6 LDKAIQKLHDEGRYR--------TFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGA   77 (396)
T ss_dssp             HHHHHHHHHHTTCCC--------CCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCCc--------cccccccccCCCCcceEeecCCCCeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCC
Confidence            444556666555542        23445666665432       146899999999999999999999999999999999


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh--ccCCcEEEEcCCchhHHHhHhhhcCCeEEE
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF--CKKGDLIVADEGVHWGIQNGLYLSRSTVVY  219 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~--~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~  219 (483)
                      |+|++|.++|+.++|.+||++||+|+|.|++++|+||+.||.++++++  .+++|+|+.|+..|.++.+|+++++++++.
T Consensus        78 gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~  157 (396)
T d2bwna1          78 GSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRI  157 (396)
T ss_dssp             CCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEE
T ss_pred             CccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceE
Confidence            999999999999999999999999999999999999999999999988  478999999999999999999999999999


Q ss_pred             ecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccc
Q 011567          220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH  299 (483)
Q Consensus       220 ~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~  299 (483)
                      |+|||+++++++++...+.      .+++|++|++|+++|+++||++|++||+|||++|++||+|++|++|++|+|+.++
T Consensus       158 f~Hnd~~~l~~l~~~~~~~------~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~  231 (396)
T d2bwna1         158 FRHNDVAHLRELIAADDPA------APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAER  231 (396)
T ss_dssp             ECTTCHHHHHHHHHHSCTT------SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHH
T ss_pred             eecchHHHhhhHHhhhccc------CceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhh
Confidence            9999999999988764432      5789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNT  377 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~  377 (483)
                      +++. .++||+++||+|+||+.|||++++++++++++..+.+++||+++||..++++.++++++...  ++.+.+++.+.
T Consensus       232 ~~~~-~~~di~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~  310 (396)
T d2bwna1         232 DGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHA  310 (396)
T ss_dssp             HTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             cCCc-eeeeeeeecccccccccccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            9985 77899999999999999999999999999999999999999999999999999999988643  44678888999


Q ss_pred             HHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC
Q 011567          378 AILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA  457 (483)
Q Consensus       378 ~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~  457 (483)
                      +++++.|.+. |+++.. ..+||+++.+.        +...+.++++++|+++||++.+..+|++++..  ++|||++++
T Consensus       311 ~~~~~~l~~~-g~~~~~-~~spIvpv~ig--------~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~--~rlRi~lsa  378 (396)
T d2bwna1         311 KVLKMRLKAL-GMPIID-HGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGT--ERLRFTPSP  378 (396)
T ss_dssp             HHHHHHHHHH-TCCBCC-CSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTC--CEEEECCCT
T ss_pred             HHHHHHHHhc-CCCcCC-CCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEEEECCCcCCCCC--eeEEEEeCc
Confidence            9999999886 888764 58999999984        34456678888787679999999999886543  569999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRI  474 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~  474 (483)
                      .||++|||+++++|+++
T Consensus       379 ~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         379 VHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             TSCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-61  Score=484.82  Aligned_cols=385  Identities=29%  Similarity=0.474  Sum_probs=347.2

Q ss_pred             HHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCC
Q 011567           68 EIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP  146 (483)
Q Consensus        68 e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~  146 (483)
                      .+.+-++.+..+++.        ....++++++|++++ .|||+||||+|+||||+..||++++++++++++||+++|++
T Consensus        11 ~~~~~l~~~~~~g~~--------r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~s   82 (401)
T d1fc4a_          11 QLTNDLETARAEGLF--------KEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASV   82 (401)
T ss_dssp             HHHHHHHHHHHTTCC--------CCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSC
T ss_pred             HHHHHHHHHHHcCCC--------CcceeccCCCCCeEEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccc
Confidence            355566667666655        335678999999999 59999999999999999889999999999999999999999


Q ss_pred             CCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHH
Q 011567          147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD  226 (483)
Q Consensus       147 ~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~  226 (483)
                      |.++|+.+.+.+||+.||+++|.+.+++++||+.|+.++++++++++|.|+.|...|.++..|+..++.++..++|+|++
T Consensus        83 r~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d~~  162 (401)
T d1fc4a_          83 RFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQ  162 (401)
T ss_dssp             HHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHH
T ss_pred             eeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCc
Q 011567          227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK  306 (483)
Q Consensus       227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~  306 (483)
                      ++++++++....    +..+++|++|++|++.|+++||+++++||++||++||+||+|++|++|.+|+|..+++++. .+
T Consensus       163 ~le~~~~~~~~~----~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~-~~  237 (401)
T d1fc4a_         163 ELEARLKEAREA----GARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM-GR  237 (401)
T ss_dssp             HHHHHHHHHHHT----TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT-TC
T ss_pred             HHHHHHHHhhhc----ccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCC-CC
Confidence            999998776532    2346899999999999999999999999999999999999999999999999999999986 67


Q ss_pred             eeEEEcccccccc-CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          307 IDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       307 ~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      +|++++|++|++| ..||+++++++++++++..+.+++|+++++|..++++.++++.+.+.++++++++++.+++++.+.
T Consensus       238 ~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~  317 (401)
T d1fc4a_         238 VDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMS  317 (401)
T ss_dssp             CSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeecccccccCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhc
Confidence            8999999999995 569999999999999999999999999999999999999999998888999999999999999998


Q ss_pred             cCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH
Q 011567          386 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       386 ~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      .. ++.+.. ..+|++++.+.        +...+.++++.+++ +||++.+..||++++..  ++||+++++.||+||||
T Consensus       318 ~~-g~~~~~-~~~pIv~v~~~--------~~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~--~~lRi~~~a~hT~edId  384 (401)
T d1fc4a_         318 AA-GFTLAG-ADHAIIPVMLG--------DAVVAQKFARELQK-EGIYVTGFFYPVVPKGQ--ARIRTQMSAAHTPEQIT  384 (401)
T ss_dssp             HT-TCCBCC-SSSSEEEEEEE--------CHHHHHHHHHHHHH-TTEECCEECTTSSCTTC--EEEEEECCTTCCHHHHH
T ss_pred             cc-CCccCC-CCCCEEEEEEC--------CHHHHHHHHHHHHH-CCceEEeECCCCCCCCC--ceEEEEECCCCCHHHHH
Confidence            86 777654 47899998884        33456678887665 59999999999875543  45999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011567          466 KACESLKRISAVV  478 (483)
Q Consensus       466 ~~~~~l~~~~~~~  478 (483)
                      +++++|+++.+++
T Consensus       385 ~~v~al~ev~~~l  397 (401)
T d1fc4a_         385 RAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998774

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-60  Score=476.36  Aligned_cols=361  Identities=25%  Similarity=0.370  Sum_probs=330.1

Q ss_pred             cCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC
Q 011567           91 CEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP  170 (483)
Q Consensus        91 ~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e  170 (483)
                      ..++++++++|.++.+|||++|||+|+||||+..||++++++.+++++||+++|++|.++|+.+.|.+||+.||+|+|.|
T Consensus        20 ~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e   99 (383)
T d1bs0a_          20 RRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS   99 (383)
T ss_dssp             CCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS
T ss_pred             ccccccCCCCCCeEEECCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      ++++|+||+.|+.++++++++++|.|++|+..|.++..|++.++.+++.|+|||+++||+.+.+...       .+++|+
T Consensus       100 ~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~l~~~~~-------~~~~vv  172 (383)
T d1bs0a_         100 RALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP-------GQQMVV  172 (383)
T ss_dssp             EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCS-------SCEEEE
T ss_pred             ceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecchHHHHHHHHhcccCC-------CceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999987554       378999


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR  330 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~  330 (483)
                      +|++++++|+++|+++|+++|++||++|++||+|++|++|.+|+|.++++++.+   |+++.|++|++|+.||+++++.+
T Consensus       173 ~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~---~~~~~t~~ka~g~~Gg~v~~~~~  249 (383)
T d1bs0a_         173 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKP---ELLVVTFGKGFGVSGAAVLCSST  249 (383)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCC---SEEEEESSSTTSSCCEEEEECHH
T ss_pred             ecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcc---ccccccccccccccccccccchh
Confidence            999999999999999999999999999999999999999999999999999875   67788999999999999999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS  408 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~  408 (483)
                      +++.++..+.++.|+++++|..++++.+++++++..  +..+++++++..++++.|.++ |+.+. +..+||+++.+.  
T Consensus       250 ~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~s~Ii~v~~g--  325 (383)
T d1bs0a_         250 VADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVG--  325 (383)
T ss_dssp             HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEE--
T ss_pred             HHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCEEEEEEC--
Confidence            999999999999999999999999999999888743  467888999999999999986 77765 347899888874  


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                            ++..+.++.+.+++ +||++.+..||++++..  +.||+++++.||+||||+++++|+.+
T Consensus       326 ------~~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~--~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         326 ------DNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGT--ARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             ------SHHHHHHHHHHHHH-TTEECCEECTTSSCTTC--EEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHH-CCceEEEEcCCCCCCCC--ceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence                  33456678887665 59999999999886543  56999999999999999999999864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-42  Score=347.60  Aligned_cols=364  Identities=20%  Similarity=0.189  Sum_probs=285.7

Q ss_pred             CHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcC
Q 011567           65 TKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYG  140 (483)
Q Consensus        65 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g  140 (483)
                      +.+++-+...+|.+.++.|        .|+++++++|.|+| .|||+||||.++   ..||| +||+|.+|+++|+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~p--------~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Av~~q~~~~~   74 (404)
T d2byla1           4 TSDDIFEREYKYGAHNAHP--------LPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGH-CHPKIVNALKSQVDKLT   74 (404)
T ss_dssp             CHHHHHHHHHHHBCSCCCC--------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHhccCCCCC--------CCceEEEeecCEEEECCCCEEEEecCCHHHHhhcC-CCHHHHHHHHHHHhhCC
Confidence            3467777888887766653        36779999999999 899999999996   67999 89999999999999865


Q ss_pred             CCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhH
Q 011567          141 VGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNG  209 (483)
Q Consensus       141 ~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g  209 (483)
                      ..+.     ........++++.++++.+.+.+.+++||++|++.|++...           ++..++..+..+|+....+
T Consensus        75 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~  149 (404)
T d2byla1          75 LTSR-----AFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA  149 (404)
T ss_dssp             CCCT-----TEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHH
T ss_pred             Cccc-----ccccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccce
Confidence            4321     11234567788999999999988888999999999986542           4567888999999877666


Q ss_pred             hhhcC------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHH
Q 011567          210 LYLSR------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEK  273 (483)
Q Consensus       210 ~~~s~------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k  273 (483)
                      +..++            ..+..++++|++++++.++.  +       ++++|++||+++++|.+.|    |++|+++|++
T Consensus       150 ~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~--~-------~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~  220 (404)
T d2byla1         150 ISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--P-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR  220 (404)
T ss_dssp             HTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTS--T-------TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             eccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCC--C-------CeEEEEECCccCCCCCccCCHHHHHHHHHHHHh
Confidence            55443            23567889999999998853  1       3889999999999998877    9999999999


Q ss_pred             cCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCc
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLP  349 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~  349 (483)
                      ||++||+||++++  +|++|.++ .+++|+.|   ||+  +++|+++.   +.|.+++++++++.+....++.+|+  .+
T Consensus       221 ~g~llI~DEV~tG--fgR~G~~~a~~~~gv~P---Di~--~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~--gn  291 (404)
T d2byla1         221 HQVLFIADEIQTG--LARTGRWLAVDYENVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYG--GN  291 (404)
T ss_dssp             HTCEEEEECTTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSST--TC
T ss_pred             cCeEEEeeccccc--cccccccchhhhcCCCC---CEE--EECchhhCCCccceeeeechhhhhccCCCCCCcCCC--cC
Confidence            9999999999975  56666655 58999988   898  79999972   2345788999988876665555554  48


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC-ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~-~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                      |+.|+++.++|+.+++.+ +.++.+++.+++++.|.++.. +.......+.+..+.+.++...      ...++..++++
T Consensus       292 pl~~aaa~a~L~~i~~~~-l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~------~~~~~~~~l~~  364 (404)
T d2byla1         292 PLGCRVAIAALEVLEEEN-LAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDW------DAWKVCLRLRD  364 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSSC------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-chhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCch------hHHHHHHHHHh
Confidence            999999999999998754 889999999999999987632 1111123567888887553321      13457777766


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       +|+++.+...         +.||++|++.+|++|||+++++|++++++
T Consensus       365 -~Gvl~~~~~~---------~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         365 -NGLLAKPTHG---------DIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             -TTEECEEEET---------TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -CCeEEecCCC---------CEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence             5999876422         34999999999999999999999999864

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=5.1e-42  Score=347.67  Aligned_cols=377  Identities=17%  Similarity=0.238  Sum_probs=279.3

Q ss_pred             HHHHHHHHhhcCCCCCCccccc--ccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhc
Q 011567           66 KKEIDELCDEWVPESLIPPIIE--EMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKY  139 (483)
Q Consensus        66 ~~e~~~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~  139 (483)
                      .+|+-+.-+++.|.....+...  .....|.++++++|.|+| .|||+||||.++   +.+|| +||+|.+|+++++++.
T Consensus         6 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~   84 (427)
T d2gsaa_           6 SDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKG   84 (427)
T ss_dssp             HHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhc
Confidence            3466666777777553322111  112347889999999999 899999999987   77999 8999999999999984


Q ss_pred             CCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-EEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcC-
Q 011567          140 GVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-SILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSR-  214 (483)
Q Consensus       140 g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~-  214 (483)
                      ..       .........++++.+++..+..+ +.+.+||++|++.|++   .+++|..+|.++.+||+.+..++.+++ 
T Consensus        85 ~~-------~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~  157 (427)
T d2gsaa_          85 TS-------FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGS  157 (427)
T ss_dssp             SC-------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCH
T ss_pred             Cc-------cccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCC
Confidence            33       12234567788999999887554 4555899999999976   467899999999999987655443332 


Q ss_pred             ------------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHH
Q 011567          215 ------------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKE  272 (483)
Q Consensus       215 ------------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~  272 (483)
                                        .+...++++|++++|+++++...       .+++|++||+++++|.+.|    |++|+++|+
T Consensus       158 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~-------~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~  230 (427)
T d2gsaa_         158 GVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG-------EIAGVILEPIVGNSGFIVPDAGFLEGLREITL  230 (427)
T ss_dssp             HHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTT-------TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHH
T ss_pred             cccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCC-------CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHH
Confidence                              24567789999999999976543       4899999999999999888    999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCCceeeccHHHHHHHHhcCCceeec-CCCc
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFS-ASLP  349 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs-~~~~  349 (483)
                      +||++||+||++++++.|.  .+..+++|+.|   ||+  +++|++|  .+.|.+++++++++.+......+.++ .+.|
T Consensus       231 ~~~~llI~DEv~tG~r~g~--~~~~~~~gi~P---Di~--~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gn  303 (427)
T d2gsaa_         231 EHDALLVFDEVMTGFRIAY--GGVQEKFGVTP---DLT--TLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGN  303 (427)
T ss_dssp             HTTCEEEEECTTTBTTTBT--TCHHHHTTCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTC
T ss_pred             Hhceeeeeccccccceecc--cchHHhcCCCH---HHH--hhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCC
Confidence            9999999999998644332  34568999988   898  7999997  22245678999998876544333333 3679


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCC-----chhhHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGS-----MKNDLQLLED  421 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~  421 (483)
                      |+.|++++++|+++++.+ +.++++++.++|++.|+++.   +........+.++.+.+......     ...+......
T Consensus       304 pla~AAala~Le~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~  382 (427)
T d2gsaa_         304 PLAMTAGIKTLELLRQPG-TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSR  382 (427)
T ss_dssp             HHHHHHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHH
T ss_pred             chhhHHHHHhhHHhhhhh-HHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHH
Confidence            999999999999998754 88999999999999886541   22222122344666665332111     1123344567


Q ss_pred             HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +...|++ +||++.+..+           .++.++..||++|||++++++++++++
T Consensus       383 ~~~~ll~-~Gv~l~p~~~-----------~~~~~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         383 FHRGMLE-QGIYLAPSQF-----------EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHH-TTEECCSSTT-----------SCEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-CCEEECCCCC-----------cceeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            7777776 5999876433           235578999999999999999998864

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-42  Score=346.25  Aligned_cols=378  Identities=20%  Similarity=0.215  Sum_probs=279.8

Q ss_pred             HHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567           66 KKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV  141 (483)
Q Consensus        66 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~  141 (483)
                      .+|+-+...+..|.+..       .+.|.++++++|.|+| +|||+||||.++   +.||| +||+|.+|+.++++++..
T Consensus         3 ~~~l~~r~~~~~~~g~~-------~~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~   74 (425)
T d1sffa_           3 NKELMQRRSQAIPRGVG-------QIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSH   74 (425)
T ss_dssp             HHHHHHHHHHHSCTTBC-------CSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSC
T ss_pred             hHHHHHHHHHhcCCCCC-------CCCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccC-CcHHHHHHHHHHHhhcCC
Confidence            45555555555554422       2347789999999999 899999999996   78999 899999999999998754


Q ss_pred             CCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC
Q 011567          142 GSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS  215 (483)
Q Consensus       142 g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~  215 (483)
                      .+..    ..+.+...++.++|.+.++.   +.+++.+||++|++.|++   .+++|.++|.++..||+.+...+.+++.
T Consensus        75 ~~~~----~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~  150 (425)
T d1sffa_          75 TCFQ----VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGK  150 (425)
T ss_dssp             CCTT----TEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSC
T ss_pred             cccc----cccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCC
Confidence            3221    22357788999999999963   345566999999999965   5678999999999999988877776642


Q ss_pred             e-------------EEEecCC----C------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHH
Q 011567          216 T-------------VVYFKHN----D------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELI  268 (483)
Q Consensus       216 ~-------------v~~~~~~----d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~  268 (483)
                      .             ....+.+    +      ....++.+...     ..+..+++|++||+++++|.+.|    |++|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~  225 (425)
T d1sffa_         151 VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKND-----AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR  225 (425)
T ss_dssp             CTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHT-----CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHH
T ss_pred             CCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhc-----ccccceEEEEecCccCCCCcccCCHHHHHHHH
Confidence            1             1111111    1      11122222211     12235899999999999888776    89999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCC-ccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS  345 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs  345 (483)
                      ++|++||++||+||++++  +|++|. +..+++|+.|   ||+  +++|++|.  +-|.+++++++++.+....++.+|+
T Consensus       226 ~lc~~~gillI~DEV~tG--~gR~g~~~a~~~~gv~P---Di~--~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~  298 (425)
T d1sffa_         226 ALCDEHGIMLIADEVQSG--AGRTGTLFAMEQMGVAP---DLT--TFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA  298 (425)
T ss_dssp             HHHHHHTCEEEEECTTTT--TTTTSSSSGGGGTTSCC---SEE--EECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSS
T ss_pred             HHHHHcCceEEecccccc--CCCcchhhHHHhcCCCc---cce--ecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCC
Confidence            999999999999999986  345554 4458999998   888  79999972  1244688999999887666666665


Q ss_pred             CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567          346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI  422 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i  422 (483)
                      +  +|+.|++++++|+++++.+ ..+++++..+++++.|.++   .++.......+.++.+.+..+......+......+
T Consensus       299 g--npl~~aaa~a~L~~i~~~~-~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~  375 (425)
T d1sffa_         299 G--NPIACVAALEVLKVFEQEN-LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI  375 (425)
T ss_dssp             S--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHH
T ss_pred             c--CHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHH
Confidence            4  8999999999999998754 8899999999998887553   12222223457788888754332223345567788


Q ss_pred             HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ..+++++ |+++.+....       +..||++|++.+|++|||+++++++++++++
T Consensus       376 ~~~l~~~-Gvl~~~~g~~-------~n~i~~~PpL~it~~eid~~l~~l~~al~ei  423 (425)
T d1sffa_         376 VARARDK-GLILLSCGPY-------YNVLRILVPLTIEDAQIRQGLEIISQCFDEA  423 (425)
T ss_dssp             HHHHHHT-TEECEEESTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCEEeccCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8887765 9998765321       2449999999999999999999999999886

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-40  Score=331.96  Aligned_cols=337  Identities=19%  Similarity=0.269  Sum_probs=265.3

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   +.||| +||+|.+|+.+++++....   +..+  +.+...++++.+.+..
T Consensus        19 ~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh-~hp~v~~a~~~~~~~~~~~---~~~~--~~~~~~~la~~l~~~~   92 (387)
T d1vefa1          19 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAM---PQTL--PTPMRGEFYRTLTAIL   92 (387)
T ss_dssp             CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCC---CTTS--CCHHHHHHHHHHHHTS
T ss_pred             CCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcC-CcHHHHHHHHHHHHhhccc---cccc--CCchHHHHHHHhhhhc
Confidence            47889999999999 899999999885   67999 8999999999999984321   1112  3567778888888887


Q ss_pred             CCC--CEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHHHHHH
Q 011567          168 GTP--DSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMDSLRN  230 (483)
Q Consensus       168 g~e--~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~~Le~  230 (483)
                      +..  .+.+.+||++|+++|++.   +++|..+|.++..||+.+..+..+++            ..+..+++||.+.|++
T Consensus        93 ~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~  172 (387)
T d1vefa1          93 PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR  172 (387)
T ss_dssp             CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH
T ss_pred             cccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHH
Confidence            654  566679999999999754   68899999999999998877776664            2466789999999988


Q ss_pred             HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCC
Q 011567          231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVD  305 (483)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~  305 (483)
                      .+++          .+++|++||+++++|.+.|    |++|+++|+|||++||+||++++  +|++|.++ .+++|+.| 
T Consensus       173 ~~~~----------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--fgR~G~~~~~~~~~v~P-  239 (387)
T d1vefa1         173 AVDE----------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG--MGRTGKRFAFEHFGIVP-  239 (387)
T ss_dssp             HCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHHTCCC-
T ss_pred             hcCC----------CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccc--cCccCCCcccccCCcCC-
Confidence            7743          3899999999999898877    99999999999999999999985  46666655 48999998 


Q ss_pred             ceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR  381 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~  381 (483)
                        ||+  +++|+++  ||+    +++++++++.+....++.+|++  ||+.|+++.++|+.+++. +..++++++.++++
T Consensus       240 --Di~--~~gK~l~--gG~~~~~~~~~~~~~~~~~~~~~g~T~~g--nPla~aaa~a~L~~l~~~-~~~~~v~~~g~~l~  310 (387)
T d1vefa1         240 --DIL--TLAKALG--GGVPLGVAVMREEVARSMPKGGHGTTFGG--NPLAMAAGVAAIRYLERT-RLWERAAELGPWFM  310 (387)
T ss_dssp             --SEE--EECGGGG--TTSSCEEEEEEHHHHHTSCTTSSCCSSTT--CHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred             --cee--eecccCC--CCccccccccceeeeeccccCCccccCCC--Ccchhhhcccchhhcccc-cccchHhhhhHHHH
Confidence              898  7999998  544    5677888887766666666654  899999999999999764 48899999999999


Q ss_pred             HhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          382 TGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       382 ~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      +.|+++..-.+. ....+.+..+.+.++.         ...+...++++ |+++.+..         +..||++|+..+|
T Consensus       311 ~~L~~l~~~~v~~vrg~Gl~~~ie~~~~~---------~~~~~~~~~~~-g~l~~~~g---------~~~ir~~Ppl~it  371 (387)
T d1vefa1         311 EKLRAIPSPKIREVRGMGLMVGLELKEKA---------APYIARLEKEH-RVLALQAG---------PTVIRFLPPLVIE  371 (387)
T ss_dssp             HHHHTSCCTTEEEEEEETTEEEEEESSCS---------HHHHHHHHHHH-CEECEESS---------TTEEEECCCTTCC
T ss_pred             HHHHhcCCCceEEEeecceEEEEEEeCCc---------hHHHHHHHHHC-CCeEEecC---------CCEEEEECCccCC
Confidence            999876321111 1234678888885432         12344444444 77765432         1349999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRIS  475 (483)
Q Consensus       461 ~edi~~~~~~l~~~~  475 (483)
                      ++|||++++++++++
T Consensus       372 ~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         372 KEDLERVVEAVRAVL  386 (387)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999886

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=2.3e-40  Score=336.33  Aligned_cols=363  Identities=18%  Similarity=0.189  Sum_probs=265.1

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| +|||+||||.++   ..+|| +||+|.+|+.+|+++++...  +   ...++...+++++|++.+
T Consensus        23 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~--~---~~~~~~~~~la~~L~~~~   96 (431)
T d1zoda1          23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF--S---EMLSRPVVDLATRLANIT   96 (431)
T ss_dssp             CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC--T---TCCCHHHHHHHHHHHHHS
T ss_pred             CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcC-CCHHHHHHHHHHHhhccccc--c---ccccHHHHHHHHHHHHhC
Confidence            47889999999999 899999999986   77999 89999999999999975321  1   123567789999999987


Q ss_pred             --CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEe--cC-------
Q 011567          168 --GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLSRST-----------VVYF--KH-------  222 (483)
Q Consensus       168 --g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~--~~-------  222 (483)
                        +.+.+++++||++|++.|++.   +++|..++.++..||+.+...+..++..           ...+  ++       
T Consensus        97 ~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (431)
T d1zoda1          97 PPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE  176 (431)
T ss_dssp             CTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE
T ss_pred             CcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccc
Confidence              456777789999999999764   6899999999999999887666654321           1111  11       


Q ss_pred             -----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          223 -----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       223 -----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                           .+.++++........   ..+..+++|++||+++++|.+.|    |++|+++|++||++||+||++++  +|++|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~---~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG--~gRtG  251 (431)
T d1zoda1         177 RNGAYDYLAELDYAFDLIDR---QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG--VGRTG  251 (431)
T ss_dssp             ETTEECHHHHHHHHHHHHHH---HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTS
T ss_pred             cccchhhhhhHHHHHHHHHH---hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccc--ccccc
Confidence                 123344433322211   12346999999999999888766    99999999999999999999985  45555


Q ss_pred             Ccc-ccccCCCCCceeEEEccccccccCCCce----eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcH
Q 011567          294 RGL-TEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPD  368 (483)
Q Consensus       294 ~g~-~~~~~v~~~~~Di~~~s~~K~lg~~GG~----i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~  368 (483)
                      .++ .+++|+.|   ||+  +++|+++  ||+    +++++++++........+..+.+.+|++|+++.++++++++++ 
T Consensus       252 ~~~~~~~~gv~P---Di~--~~gK~l~--gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~-  323 (431)
T d1zoda1         252 TMFACQRDGVTP---DIL--TLSKTLG--AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG-  323 (431)
T ss_dssp             SSSTHHHHTCCC---SEE--EECHHHH--TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT-
T ss_pred             cccccccCCCCc---chh--ccccccc--cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhh-
Confidence            544 58999998   898  7999997  443    4677777776654433333344569999999999999998764 


Q ss_pred             HHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC
Q 011567          369 LITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC  445 (483)
Q Consensus       369 ~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~  445 (483)
                      ..++..++.+++.+.+.++   .++.......+.++.+.+..+....+.......++...+++ +|++......+..   
T Consensus       324 ~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~~~~~---  399 (431)
T d1zoda1         324 LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGM---  399 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTS---
T ss_pred             hhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeeeecCC---
Confidence            7888888888888776543   12222223456788887743322222233445677887776 4887543322211   


Q ss_pred             CCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          446 RLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       446 ~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                        ...||++|++.+|++|||++++++++++++++
T Consensus       400 --~~~i~l~Ppl~it~~eid~~~~~l~~al~~vl  431 (431)
T d1zoda1         400 --GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL  431 (431)
T ss_dssp             --CCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence              23499999999999999999999999999874

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=2e-39  Score=326.28  Aligned_cols=364  Identities=18%  Similarity=0.216  Sum_probs=264.3

Q ss_pred             CHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcC
Q 011567           65 TKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYG  140 (483)
Q Consensus        65 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g  140 (483)
                      |++|..+.-+++.-.++.|        .|.++++++|.|+| .|||+||||.++   ..||| +||+|.+|+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~y~p--------~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~   72 (404)
T d1z7da1           2 TPEDYINNELKYGAHNYDP--------IPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLT   72 (404)
T ss_dssp             CHHHHHHHHHHHBCCCCCC--------EEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCS
T ss_pred             CHHHHHHHHHhcCCCCCCC--------CCceEEEeecCEEEECCCCEEEEccccHHHHhhhc-CcHHHHHHHHHHHHhCC
Confidence            4555555555555544432        36789999999999 899999999986   67999 89999999999999876


Q ss_pred             CCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhH
Q 011567          141 VGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNG  209 (483)
Q Consensus       141 ~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g  209 (483)
                      ..+.   .+  +......+++.++++.+.+.+.++++|++|+..+++...           .+..++.....+|+.....
T Consensus        73 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~  147 (404)
T d1z7da1          73 ICSR---AF--FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGC  147 (404)
T ss_dssp             CCCT---TS--EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------
T ss_pred             Cccc---cc--chHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccc
Confidence            5321   12  345678889999999999999999999999999876432           2345778888899876665


Q ss_pred             hhhcCC------------eEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHH
Q 011567          210 LYLSRS------------TVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEK  273 (483)
Q Consensus       210 ~~~s~~------------~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k  273 (483)
                      ...++.            ....++.++.+.++..+.   +      .++++|++||+++++|.+.|    |++|+++|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~------~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~  218 (404)
T d1z7da1         148 ISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK---D------PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK  218 (404)
T ss_dssp             ------------------CEEEECTTCHHHHHHHHT---S------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             cccccccccccCCCCCCccccccccchHHHHHHHhc---C------CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHH
Confidence            554432            234455667666665442   2      14899999999999998877    9999999999


Q ss_pred             cCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCc
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLP  349 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~  349 (483)
                      ||++||+||++++  +|++|.++ .+++|+.|   ||+  +++|+++.   +.|.+++++++++.++...++.+|++  +
T Consensus       219 ~g~llI~DEV~tG--fgRtG~~~~~e~~gv~P---Div--t~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~g--n  289 (404)
T d1z7da1         219 YNVLFVADEVQTG--LGRTGKLLCVHHYNVKP---DVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGG--N  289 (404)
T ss_dssp             TTCEEEEECTTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTT--C
T ss_pred             cCCEEEEEcCccC--CCcccccccccccCCCC---CEE--EEcccccCCCCCcccccchHHHHccCCCCCcCcCCCC--C
Confidence            9999999999974  56666544 58999988   898  79999972   34667899999998877666655554  8


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC-CCcee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567          350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI-HGLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA  426 (483)
Q Consensus       350 p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~-~~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~  426 (483)
                      |++|+++.++|+++++++ ..+++.++.+.+.+.|.+. ...++  .....+.++.+.+.++..       ...++..++
T Consensus       290 pl~~aaa~a~L~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-------~~~~~~~~l  361 (404)
T d1z7da1         290 PLAASICVEALNVLINEK-LCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-------NVLDICLKL  361 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-------CHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcch-hhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-------cHHHHHHHH
Confidence            999999999999988754 7777777777776665432 12221  112356788888865322       133566666


Q ss_pred             HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++ +|+++.+...         +.||++|++.+|++|||+++++|+++++++
T Consensus       362 ~~-~Gl~~~~~~~---------~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         362 KE-NGLITRDVHD---------KTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             HH-TTEECCEETT---------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             Hh-CCeEEecCCC---------CEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence            65 5999865432         349999999999999999999999999864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-38  Score=318.74  Aligned_cols=349  Identities=15%  Similarity=0.162  Sum_probs=257.1

Q ss_pred             cCCC-ccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh
Q 011567           91 CEPP-VLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK  165 (483)
Q Consensus        91 ~~~~-~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~  165 (483)
                      +.|+ ++++++|.|+| .||++||||.++   ..||| +||+|.+|+++|+++...... +   ..+.+...++.+++.+
T Consensus        23 ~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~-~---~~~~~~~~~l~~~l~~   97 (429)
T d1s0aa_          23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF-G---GITHAPAIELCRKLVA   97 (429)
T ss_dssp             CCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCC-S---SEECHHHHHHHHHHHH
T ss_pred             CCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcC-CcHHHHHHHHHHHHhcCCccc-C---CccchHHHHHHHHHHh
Confidence            3455 48899999999 899999999987   67999 899999999999998643211 1   1234667888899988


Q ss_pred             hhC--CCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEe--
Q 011567          166 FLG--TPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSRST-------------VVYF--  220 (483)
Q Consensus       166 ~~g--~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~--  220 (483)
                      ..+  .+.+.+.+||++|++.|++...        ++..+|.+...+|+.+..++.+++..             ....  
T Consensus        98 ~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~  177 (429)
T d1s0aa_          98 MTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPA  177 (429)
T ss_dssp             HSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECC
T ss_pred             hhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccc
Confidence            875  3456677999999999976532        24578999999999888777665421             1111  


Q ss_pred             ---------cCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-CCcc-C---hHHHHHHHHHcCcEEEEeCcccc
Q 011567          221 ---------KHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIA-P---LDELIRLKEKYRFRVFLDESNSF  286 (483)
Q Consensus       221 ---------~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G~i~-~---L~~l~~l~~k~~~~li~DEa~s~  286 (483)
                               +.++.+++++.+.+...       .+++|++||+.... |... |   |++|+++|++||++||+||++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tG  250 (429)
T d1s0aa_         178 PQSRMDGEWDERDMVGFARLMAAHRH-------EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG  250 (429)
T ss_dssp             CCSBC-CCCCGGGGHHHHHHHHHHTT-------TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cccccccccchhhhhhhhhhhhhcCC-------ccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccc
Confidence                     11234555555544433       49999999998554 4433 3   89999999999999999999986


Q ss_pred             ccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcC-Cce--eecCCCcHHHHHHHHHH
Q 011567          287 GVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS-SGY--VFSASLPPYLASAAITA  359 (483)
Q Consensus       287 g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~-~~~--~fs~~~~p~~~aaa~~a  359 (483)
                        +|++|.++ .+++|+.|   ||+  +++|+++.   +.+.+++++++++.+.... ..+  ..+.+.+|+.|+++.++
T Consensus       251 --fGRtG~~~~~~~~~v~P---Di~--~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~  323 (429)
T d1s0aa_         251 --FGRTGKLFACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS  323 (429)
T ss_dssp             --TTTTSSSSGGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHH
T ss_pred             --ccccccccccccceecc---ccc--ccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcc
Confidence              46666655 48999998   898  79999962   2245688999998876532 122  12334689999999999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee
Q 011567          360 IDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS  437 (483)
Q Consensus       360 l~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~  437 (483)
                      |++++++ ++.++++++.++|+++|+++...+...  ...+.+..+.+..+..        ..++...|++ +|+++.+.
T Consensus       324 L~~i~~~-~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~--------~~~~~~~~~~-~Gl~~~~~  393 (429)
T d1s0aa_         324 LAILESG-DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN--------MAALQKFFVE-QGVWIRPF  393 (429)
T ss_dssp             HHHHHTC-HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBC--------HHHHHHHHHH-TTEECCCB
T ss_pred             ccccccc-cccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCccc--------HHHHHHHHHH-CCcEEEec
Confidence            9999875 589999999999999997763222221  2346788888765432        2356676666 59998653


Q ss_pred             cccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          438 KRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       438 ~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .          ..||++|+..+|++|||+++++|+++++++
T Consensus       394 g----------~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         394 G----------KLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             T----------TEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             C----------CEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            2          349999999999999999999999998764

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8e-38  Score=319.30  Aligned_cols=350  Identities=15%  Similarity=0.147  Sum_probs=254.4

Q ss_pred             CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567           92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL  167 (483)
Q Consensus        92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~  167 (483)
                      .|.++++++|.|+| .|||+||||.++   +.||| +||+|.+|+.+++++....+..............+|.++|.+..
T Consensus        35 ~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~  113 (461)
T d1ohwa_          35 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA  113 (461)
T ss_dssp             CCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGC
T ss_pred             CCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcC-CcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhh
Confidence            47889999999999 899999999886   68999 89999999999887632111000001112245667777777765


Q ss_pred             C--CCCEEEecccHHHHHhhhhhh-----------------------------ccCCcEEEEcCCchhHHHhHhhhcCCe
Q 011567          168 G--TPDSILYSYGLSTMFSAIPCF-----------------------------CKKGDLIVADEGVHWGIQNGLYLSRST  216 (483)
Q Consensus       168 g--~e~~i~~~sG~~a~~~ai~~~-----------------------------~~~gdiI~~~~~~h~s~~~g~~~s~~~  216 (483)
                      +  .+.+++++||++|++.|++..                             +++..+|.+..+||+.+..++.+++.+
T Consensus       114 ~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~  193 (461)
T d1ohwa_         114 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK  193 (461)
T ss_dssp             CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSC
T ss_pred             ccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCc
Confidence            4  456777899999999998753                             223468889999999988888877642


Q ss_pred             E-------------EEecC-----------------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---
Q 011567          217 V-------------VYFKH-----------------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---  263 (483)
Q Consensus       217 v-------------~~~~~-----------------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---  263 (483)
                      .             ..+++                 ++.+++++++.....    .+..+++|++||+++.+|.+.|   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~iAavivEPi~g~~G~~~~~~~  269 (461)
T d1ohwa_         194 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRK----KKKTVAGIIVEPIQSEGGDNHASDD  269 (461)
T ss_dssp             HHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECSSBCTTTCBCCCHH
T ss_pred             ccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHh----CCCccceeeeccccccccccCchhh
Confidence            1             11111                 123455555544321    2346899999999999888766   


Q ss_pred             -hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCc
Q 011567          264 -LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG  341 (483)
Q Consensus       264 -L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~  341 (483)
                       |++|+++|++||++||+||++++  +|+||+++. +++|+. ..+||+  +++|+++  ||+......+.. .....+.
T Consensus       270 fl~~lr~lc~~~gillI~DEV~tG--~gRtG~~~~~e~~gi~-~~PDiv--~~gK~l~--~g~~~~~~~~~~-~~~~~~~  341 (461)
T d1ohwa_         270 FFRKLRDISRKHGCAFLVDEVQTG--GGSTGKFWAHEHWGLD-DPADVM--TFSKKMM--TGGFFHKEEFRP-NAPYRIF  341 (461)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTC--SSTTSSSSGGGGGCCS-SCCSEE--EECGGGS--SEEEEECGGGSC-SSTTSSC
T ss_pred             HHHHHHHHHHhhCcceeccccccc--cccccccccccccccc-cCchhh--hhhhccc--cccccccccccc-ccccccc
Confidence             99999999999999999999986  567777554 899985 234998  7999998  666555443321 1112222


Q ss_pred             eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCc--eeecCCCCCEEEEEecCCCCCchhh
Q 011567          342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGL--SIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~--~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      .+|  +.+|+.|+++.++|++++++ ++.++++++.++|+++|+++    +.+  ++  ...+.++.+.+.        +
T Consensus       342 ~T~--~g~p~~~aaa~a~l~~i~~~-~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v--rG~Gl~~~ie~~--------~  408 (461)
T d1ohwa_         342 NTW--LGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQARYPQFISRV--RGRGTFCSFDTP--------D  408 (461)
T ss_dssp             CSC--SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTTCEEE--EEETTEEEEECS--------S
T ss_pred             ccc--ccccccchhhcccchhhhhh-hHHHHHHHHHHHHHHHHHHHHhhCCCceEEe--eeeeEEEEEEcC--------C
Confidence            233  45899999999999999875 48999999999999998764    221  12  235778888874        3


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .....+++..+++ +|+++.+...         ..||+.|++.+|++|+|+++++|++++++
T Consensus       409 ~~~~~~i~~~~~~-~Gll~~~~~~---------~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         409 ESIRNKLISIARN-KGVMLGGCGD---------KSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHHHHHH-TTEECEEETT---------TEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH-CCeEEeeCCC---------CEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            3456678887776 5999876532         34999999999999999999999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=2.6e-28  Score=244.03  Aligned_cols=341  Identities=14%  Similarity=0.174  Sum_probs=236.0

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~  182 (483)
                      +|+++|||+.+++ ++..++.+++++++++++--.+.+.   ..|..++.+.+++.+.+..|.    ++.++.+++.+++
T Consensus        28 ~g~~vi~l~~G~p-~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al  103 (388)
T d1j32a_          28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQGKTRYGP---AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCCCeEECCCCCC-CCCCCHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence            4778999998865 5656789999999998862121111   234444455555555555553    2445555567999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ..++++++++||.|+++.++|..+...+...+.+++.++..       |+++|++.+..          +++++++..++
T Consensus       104 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~----------~~~~~~~~~P~  173 (388)
T d1j32a_         104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP----------KTKLLVFNTPS  173 (388)
T ss_dssp             HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT----------TEEEEEEESSC
T ss_pred             HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC----------CCeEEEECCCC
Confidence            99999999999999999999999988888888888777642       56666654432          25566666668


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEccccccccCCC---ceeec
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---GFCTG  327 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~K~lg~~G---G~i~~  327 (483)
                      |++|.+.+   +++|+++|++||+++|+||+|+...++..  .........+  .+..+++.|+||.++.+|   ||+++
T Consensus       174 NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~  251 (388)
T d1j32a_         174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG  251 (388)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred             CCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC--CCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE
Confidence            99999988   78899999999999999999987655431  1111111111  123688899999998666   99999


Q ss_pred             cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567          328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE  406 (483)
Q Consensus       328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~  406 (483)
                      ++++++.+........  ...++....++...+...++ ..+.++.++++.+.+.+.|++.+|+.+..+..+.++++.+.
T Consensus       252 ~~~~~~~~~~~~~~~~--~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~  329 (388)
T d1j32a_         252 PVPLVKAATKIQGHST--SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA  329 (388)
T ss_dssp             CHHHHHHHHHHHHTTT--CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG
T ss_pred             CHHHHHHHHHhhhhcc--ccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECC
Confidence            9999887654321111  12344444444444432211 13467778888999999998888888776656777777764


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ....       ...++++++++++||.+.++.....     ++.+|+++.  .+++++++++++|+++++.++
T Consensus       330 ~~~~-------~~~~~~~~ll~~~gV~v~pG~~F~~-----~~~~Rls~~--~~~e~l~~al~rl~~~l~~l~  388 (388)
T d1j32a_         330 KTGR-------SSLDFCSELLDQHQVATVPGAAFGA-----DDCIRLSYA--TDLDTIKRGMERLEKFLHGIL  388 (388)
T ss_dssp             GGTC-------CHHHHHHHHHHHHCEECEEGGGGTC-----TTBEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCC-------CHHHHHHHHHHhCCEEEEeccccCC-----CCeEEEEEe--CCHHHHHHHHHHHHHHHHHhC
Confidence            3211       1235677777777999998765432     345999985  589999999999999998764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=2.2e-29  Score=249.35  Aligned_cols=325  Identities=13%  Similarity=0.122  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCC-------cccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567          128 LLESCTSALEKYGVGSCGPRG-------FYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADE  200 (483)
Q Consensus       128 i~~a~~~~l~~~g~g~~~~~~-------~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~  200 (483)
                      +.+++++++.+||.|....+.       ...+.+++..+++++|+++|.++++++++|++|+..++.+++++||.|+++.
T Consensus        14 l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~   93 (364)
T d2e7ja1          14 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDE   93 (364)
T ss_dssp             CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             CCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeec
Confidence            334455556667665433221       1112347899999999999999999999999999999999999999999999


Q ss_pred             CchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567          201 GVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK  273 (483)
Q Consensus       201 ~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k  273 (483)
                      ..|.++..++...|.++..++++       |++++++.+++....     ..+++|+++++++++|.+.|+++|+++|++
T Consensus        94 ~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~-----~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~  168 (364)
T d2e7ja1          94 NCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-----GEVVLALITYPDGNYGNLPDVKKIAKVCSE  168 (364)
T ss_dssp             TCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-----SCEEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred             ccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhccc-----CCceEEEeecCCCCCceeecchhheecccc
Confidence            99999999999999999999875       578888888765432     246789999999999999999999999999


Q ss_pred             cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHHHhcCCceee------c
Q 011567          274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSSSGYVF------S  345 (483)
Q Consensus       274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~~~~~f------s  345 (483)
                      ||+++|+|++|++|.++...    ..+     .+|++++|++|++++.|  |++++++++++.+......+.+      +
T Consensus       169 ~~i~livD~a~~~g~~~~~~----~~~-----g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (364)
T d2e7ja1         169 YDVPLLVNGAYAIGRMPVSL----KEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLG  239 (364)
T ss_dssp             TTCCEEEECTTTBTTBCCCH----HHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTT
T ss_pred             ccchhhccccchhhhhhhcc----ccc-----ccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccc
Confidence            99999999999877654211    112     24899999999998654  8888888877765433222211      1


Q ss_pred             CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC--CCCCEEEEEecCCCCCchhhHHHHHHHH
Q 011567          346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN--PESPIVFLILEKSTGSMKNDLQLLEDIA  423 (483)
Q Consensus       346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~i~~l~l~~~~~~~~~~~~~~~~i~  423 (483)
                      ...+.....+..++++...+.-+...+..++.+++.+.|.++ |+.+...  ....+..+................ ...
T Consensus       240 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  317 (364)
T d2e7ja1         240 CTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGR-FFL  317 (364)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGG-GHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccc-hHH
Confidence            111122222333444443322122334446777888888876 6665432  123344443311000000000000 112


Q ss_pred             HHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          424 DWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       424 ~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ...+...|+.......        ...+|++ +..+|+|||++++++|++++++
T Consensus       318 ~~~l~~~~~~~~~~g~--------~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         318 YRELKSRKIHGIKPGL--------TRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             HHHHHHTTEECSCTTC--------CSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceecCCC--------cceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence            2234555665432111        1225554 4668999999999999998875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=4.5e-27  Score=234.94  Aligned_cols=335  Identities=15%  Similarity=0.179  Sum_probs=229.8

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C-----CCCEEEeccc
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G-----TPDSILYSYG  178 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g-----~e~~i~~~sG  178 (483)
                      ++++|||+.++. ++..++.+++++.+++++...+++.   ..|    ..+|++.+|+++    +     .++.++.+++
T Consensus        24 ~~dvi~l~~g~p-~~~~p~~v~~~~~~a~~~~~~~Y~~---~~G----~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~   95 (388)
T d1gdea_          24 MKDVISLGIGEP-DFDTPQHIKEYAKEALDKGLTHYGP---NIG----LLELREAIAEKLKKQNGIEADPKTEIMVLLGA   95 (388)
T ss_dssp             CTTCEECCCCSC-CSCCCHHHHHHHHHHHHTTCCSCCC---TTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEESST
T ss_pred             CCCeEECCCCCC-CCCCCHHHHHHHHHHHhcCccCCCC---CcC----CHHHHHHHHHHHHhhccccCCChheeeeccCc
Confidence            356899998855 5656789999999999862222211   123    345566666654    2     2345556777


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .+++..++.+++++||.|+++.++|..+...++..|.+++.++..       |+++|++.+++          +++++++
T Consensus        96 ~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~i~~  165 (388)
T d1gdea_          96 NQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----------KTRALII  165 (388)
T ss_dssp             THHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----------TEEEEEE
T ss_pred             chHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc----------CCeEEEE
Confidence            799999999999999999999999999999999999999888753       56666655432          2567777


Q ss_pred             ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccCCC---ce
Q 011567          252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      ...+|++|.+.+   +++|+++|++|++++|+||+|+...++..... +....+.  .+..|+++||||++|.+|   ||
T Consensus       166 ~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~GlR~G~  243 (388)
T d1gdea_         166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM--FERTITVNGFSKTFAMTGWRLGF  243 (388)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTTCGGGCCEE
T ss_pred             CCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCC--CCeEEEEeCChhhccCccccEEE
Confidence            777889999988   78899999999999999999987655432221 2222221  234688999999998666   99


Q ss_pred             eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEE
Q 011567          325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAID---VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV  401 (483)
Q Consensus       325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~---~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~  401 (483)
                      +++++++++.+.........+  .+.....++.++++   ..+......+.++++...+.+.|... +++...+..+.++
T Consensus       244 ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl  320 (388)
T d1gdea_         244 VAAPSWIIERMVKFQMYNATC--PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYI  320 (388)
T ss_dssp             EECCHHHHHHHHHHHHTTTCS--CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEE
T ss_pred             EEeeccchhhhhhcccccccc--ccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEE
Confidence            999998887765433222222  23333333333432   11112345566677777788888775 6666555567788


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++.+.+...       ...+++++++++.||.+.++......   .+..+||++.  .+++++++++++|++++++
T Consensus       321 ~~~l~~~~~-------~~~~~~~~ll~e~gV~v~PG~~F~~~---~~~~iRis~~--~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         321 FPRIRDTGL-------TSKKFSELMLKEARVAVVPGSAFGKA---GEGYVRISYA--TAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             CCBCGGGTC-------CHHHHHHHHHHHTCEECEEGGGGCGG---GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCC-------CHHHHHHHHHHhCCEEEEechhhCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            877743211       13356777888889999987643211   1234999985  5889999999999998876

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=7.6e-26  Score=225.53  Aligned_cols=333  Identities=19%  Similarity=0.208  Sum_probs=224.0

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHH
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLST  181 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a  181 (483)
                      .+|+++|||+.++. .+..+|.+++++.+++++-..+++.   ..|..++.+.+.+.+.+..|.    ++.++++++.++
T Consensus        28 ~~G~~vi~l~~g~p-~~~~p~~i~~a~~~~~~~~~~~Y~~---~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~a  103 (382)
T d1b5pa_          28 RQGVDLVALTAGEP-DFDTPEHVKEAARRALAQGKTKYAP---PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA  103 (382)
T ss_dssp             HTTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred             hCCCCeEECCCCCC-CCCCCHHHHHHHHHHHhcCCcCCCC---CCCCHHHHHHHHhhhhhhcccccccccceecCCHHHH
Confidence            45788999999865 4556789999999998863332222   234444444444444444442    355666666899


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                      +..++++++++||.|+++.+++..+...++..|.+++.++..       |++++++.+   ..       +++++++...
T Consensus       104 l~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~-------~~~~i~~~~P  173 (382)
T d1b5pa_         104 LFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI---TP-------RTKALVVNSP  173 (382)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC---CT-------TEEEEEEESS
T ss_pred             HHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC---CC-------CCeEEEECCC
Confidence            999999999999999999999999999999999998887643       444444433   22       2566666667


Q ss_pred             cCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567          255 YQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS  328 (483)
Q Consensus       255 ~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~  328 (483)
                      +|++|.+.+   +++|+++|++||+++|.||+|+...+..  ....... .. .+..++++|+||.|+.+|   ||++++
T Consensus       174 ~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~-~~-~~~~i~~~s~SK~~~~~GlR~G~~~~~  249 (382)
T d1b5pa_         174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG--EHFSPGR-VA-PEHTLTVNGAAKAFAMTGWRIGYACGP  249 (382)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCGGG-TC-TTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred             CCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCC--CCCCHHH-cC-CCCEEEEecchhhccCcHhheEEEEEC
Confidence            899999988   8899999999999999999999766542  2222211 22 234688899999998666   999999


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHH---HHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAID---VLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~---~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~  404 (483)
                      +++++.+.........+  .+.....++.+++.   ..+. ....++.++++.+.+.+.+... |+.+..+..+.++++.
T Consensus       250 ~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~  326 (382)
T d1b5pa_         250 KEVIKAMASVSRQSTTS--PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMD  326 (382)
T ss_dssp             HHHHHHHHHHHHTTTCS--CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEE
T ss_pred             HHHHHHHHHHHHhcccC--cccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEe
Confidence            99888764332222222  22222222222221   1111 1235566677777777777775 7777656667888888


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      +.....    +   ...+.+.++ ++||.+.++.....     ++.+|+++.  .++|++++++++|+++
T Consensus       327 ~~~~~~----~---~~~~~~~l~-e~gV~v~PG~~F~~-----~~~iRis~~--~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         327 TSPIAP----D---EVRAAERLL-EAGVAVVPGTDFAA-----FGHVRLSYA--TSEENLRKALERFARV  381 (382)
T ss_dssp             CTTTCS----S---HHHHHHHHH-HTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred             CCCCCC----C---HHHHHHHHH-HCCEEEEeCcccCC-----CCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence            753221    1   123455444 56999998765432     345999985  5889999999998875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=4.6e-26  Score=221.82  Aligned_cols=331  Identities=17%  Similarity=0.185  Sum_probs=213.6

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC  190 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~  190 (483)
                      +|||.|-+-  -.++|++.+|+.++.    .|    ...||..+...+||++||+++|.+++++++||++|+..+++++.
T Consensus         1 ~~~~~~~~~--t~p~p~v~~A~~~a~----~g----~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~   70 (343)
T d1m6sa_           1 MIDLRSDTV--TKPTEEMRKAMAQAE----VG----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT   70 (343)
T ss_dssp             CEECSCGGG--CCCCHHHHHHHHTCC----CC----CGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHC
T ss_pred             CcccccccC--CCCCHHHHHHHHhhh----cC----CcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh
Confidence            367766421  125799888875542    11    12577778899999999999999999999999999999999999


Q ss_pred             cCCcEEEEcCCchhHHHhHhhhc---CCeEEEec----CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567          191 KKGDLIVADEGVHWGIQNGLYLS---RSTVVYFK----HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP  263 (483)
Q Consensus       191 ~~gdiI~~~~~~h~s~~~g~~~s---~~~v~~~~----~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~  263 (483)
                      +++|.++.+...|.++..+....   +......+    ..|++.+++.+......   .+....+++....++.+|.+.|
T Consensus        71 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  147 (343)
T d1m6sa_          71 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIH---FPRTSLIAIENTHNRSGGRVVP  147 (343)
T ss_dssp             CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTT---SCCEEEEEEESSBTTTTSBCCC
T ss_pred             ccCCceeccccccceeeecccccccccceeeccccccCccCHHHHHHhhhhhhcc---cccccccccccccccCCceecC
Confidence            99999999999998876544332   33333332    23666666665443221   2223344545555566666666


Q ss_pred             ---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccHHHHHHHHhcC
Q 011567          264 ---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSS  339 (483)
Q Consensus       264 ---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~~~~~~~~~  339 (483)
                         +++|+++|++||+++++|++++.+..+..+..........    +..+.+.+|.. +..+|++.+..+.........
T Consensus       148 ~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  223 (343)
T d1m6sa_         148 LENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA----DSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR  223 (343)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC----SEEEEESSSTTCCSSCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccc----ccccccccccccccccccccccHHHHhhhHhhC
Confidence               6788888899999999999998776554332222222221    23333444444 455677777777666554433


Q ss_pred             CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHH
Q 011567          340 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLL  419 (483)
Q Consensus       340 ~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~  419 (483)
                      ..+.++.+.+...+++......  . .....+...++...+.+.+.++.+.....+..++++++.+.+...       ..
T Consensus       224 ~~~~~~~~~~~~~~a~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~a  293 (343)
T d1m6sa_         224 KMLGGGMRQAGVLAAAGIIALT--K-MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV-------NA  293 (343)
T ss_dssp             HHHTCCCSSTHHHHHHHHHHHH--H-SSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSS-------CH
T ss_pred             cccccccchhHHHHHhhhhhhh--h-hHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcc-------cH
Confidence            2222333333333333322222  2 222455566666777777766544444444567888888754321       13


Q ss_pred             HHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          420 EDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       420 ~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .++++.+++ +||++.+...         +.+|++++..+|+||||+++++|+++++++
T Consensus       294 ~~l~~~L~~-~Gi~v~~~~~---------~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         294 HGFIEALRN-SGVLANAVSD---------TEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHHHHHHHH-HTEECEEEET---------TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCEEecCCC---------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            467776555 5999987643         459999999999999999999999999875

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=2.5e-25  Score=216.26  Aligned_cols=327  Identities=13%  Similarity=0.118  Sum_probs=206.3

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPC  188 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~  188 (483)
                      ++|||+|.|+.|.  ||+|++|+.++...++.       .|+..+.+.++++.+|+++|.+..++| ++|++||..++.+
T Consensus         3 ~~~~f~s~n~~g~--~P~v~~A~~~a~~~~~~-------~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~   73 (345)
T d1v72a1           3 PALGFSSDNIAGA--SPEVAQALVKHSSGQAG-------PYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA   73 (345)
T ss_dssp             CCCBCSCGGGCCC--CHHHHHHHHHTTSSCCC-------STTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT
T ss_pred             CCcCcCCCCCCCC--CHHHHHHHHHHhccCcc-------ccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHH
Confidence            5799999998885  79999998775433222       466778999999999999999877765 9999999999999


Q ss_pred             hccCCcEEEEcCCchhHHHhHh---hhcCCeEEEec-----CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          189 FCKKGDLIVADEGVHWGIQNGL---YLSRSTVVYFK-----HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~-----~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      .++.++.++.+...|.++....   ...+..+....     ..+++++++.+......   .......+++....+..|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  150 (345)
T d1v72a1          74 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGD---VHTTQPACVSITQATEVGS  150 (345)
T ss_dssp             SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTC---TTSCEEEEEEEESSCTTSC
T ss_pred             HHhcCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccc---cccccceeeeeeccccccc
Confidence            9999999999999998876543   33444444432     23677777766543211   1112223333333334444


Q ss_pred             cc---ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-CceeeccHHHHHHHH
Q 011567          261 IA---PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-GGFCTGSARVVDHQR  336 (483)
Q Consensus       261 i~---~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-GG~i~~~~~~~~~~~  336 (483)
                      ..   +++++.++|++||+++++|++++++..+....++... ...+ ..+..+.+..|..+.. ++.+...........
T Consensus       151 ~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (345)
T d1v72a1         151 IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM-TWKA-GVDALSFGATKNGVLAAEAIVLFNTSLATEMS  228 (345)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TGGG-TCCEEEECCGGGTCSSCEEEEESSGGGHHHHH
T ss_pred             cccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHh-hccc-cccccccCccccccccccccccchhhhhhhcc
Confidence            43   4788999999999999999999876554433333222 2211 1234433333333322 233333333332222


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                      .....+..+.....   .++.++...+.+.  .+...+..++..++...+.+++++.+..+..++++++.++.       
T Consensus       229 ~~~~~~~~~~~~~~---~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~-------  298 (345)
T d1v72a1         229 YRRKRAGHLSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS-------  298 (345)
T ss_dssp             HHHHHTTCCCSSTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-------
T ss_pred             ccccccccccchhh---HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH-------
Confidence            11111111111122   2222233333322  23555566777788888999889988877789999988731       


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                            ++++.+++ +|+.+.....       .+..|||+++..+|+||||+++++|+++
T Consensus       299 ------~~~~~L~~-~gi~v~~~~~-------~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         299 ------AMIDALLK-AGFGFYHDRW-------GPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             ------HHHHHHHH-TTCBCBCSSS-------STTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHH-cCCCccccCC-------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                  34555555 5887754321       1245999999999999999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=4.6e-25  Score=218.63  Aligned_cols=323  Identities=18%  Similarity=0.188  Sum_probs=226.1

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPC  188 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~  188 (483)
                      .|||+.+++ ++..+|.+++|+++.+.+. .+       |+...-..+|++.||++++.+  +.++.+++++++..++.+
T Consensus        27 ~I~ls~g~p-~~~~p~~i~~al~~~l~~~-~~-------Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~   97 (368)
T d1v2da_          27 AVNLGQGFP-SNPPPPFLLEAVRRALGRQ-DQ-------YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS   97 (368)
T ss_dssp             CEECCCCSC-SSCCCHHHHHHHHHHTTTS-CS-------CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CEEecCCCC-CCCCCHHHHHHHHHHhhcc-cC-------CCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhc
Confidence            699988765 5656789999999988653 21       222223468899999999964  467778888999999999


Q ss_pred             hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       189 ~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      +++++|.|++..++|..........+.+++.++.        -|.+.+++.+++          .++++++...+|++|.
T Consensus        98 l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~i~~~~p~NPtG~  167 (368)
T d1v2da_          98 LVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP----------RTRALLLNTPMNPTGL  167 (368)
T ss_dssp             HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT----------TEEEEEEESSCTTTCC
T ss_pred             cccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhcc----------CceEEEEcCCCCcccc
Confidence            9999999999999998888888888887765543        256666655533          2456666667889999


Q ss_pred             ccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567          261 IAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH  334 (483)
Q Consensus       261 i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~  334 (483)
                      +.+   +++|+++|++||+++|.||+|............ ....   .+..+++.|++|.++..|   ||+++++++++.
T Consensus       168 ~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~  243 (368)
T d1v2da_         168 VFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRL-REFA---PERTFTVGSAGKRLEATGYRVGWIVGPKEFMPR  243 (368)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCH-HHHC---TTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccc-cccc---ccccceeecccccccccccccccccccccccch
Confidence            998   788999999999999999999876544322111 1111   222566678999887655   899999988876


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      +......+..+  .++....++.+++.....   ....++.++++.+++.+.|++. |+.+..+..++++++.++..   
T Consensus       244 ~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~---  317 (368)
T d1v2da_         244 LAGMRQWTSFS--APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW---  317 (368)
T ss_dssp             HHHHHHHHTSS--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC---
T ss_pred             hhhhhhccccc--cccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCcc---
Confidence            65433222222  234333333344433322   2456677888889999999886 88887666688888887532   


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                         +       +.+++++.||.+.++.....+.. .+..+||++.  .++|++++++++|++++
T Consensus       318 ---~-------~~~ll~~~gI~v~pg~~F~~~~~-~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         318 ---D-------AFRLVEEARVALIPASAFYLEDP-PKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             ---C-------HHHHHHHTCEECEEGGGGCSSSC-CTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             ---H-------HHHHHHhCCEEEEechhhCCCCC-CCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence               1       12356678999998754332111 1244999875  58999999999999864

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.94  E-value=1.2e-24  Score=216.59  Aligned_cols=331  Identities=16%  Similarity=0.177  Sum_probs=225.9

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHh
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFS  184 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~  184 (483)
                      .+-|+|.++   .|. .+..+.+++.+.++.+.. +...............++++.||+++|.+  +.++.++|++++..
T Consensus         7 ~~~yld~~~---~~~-~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~   82 (381)
T d1elua_           7 NKTYFNFGG---QGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDI   82 (381)
T ss_dssp             TSEECCTTT---CCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHH
T ss_pred             CCEEeeCCc---ccC-CCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhh
Confidence            345777554   344 445688999888875421 11111101111234567889999999964  56666888999988


Q ss_pred             hhhhh-ccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          185 AIPCF-CKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       185 ai~~~-~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      ++.++ .++||.|++....|.++...+.    ..|.++..++.+   +.++.++.+++....      .++++++..+++
T Consensus        83 ~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~------~t~~v~i~~~~n  156 (381)
T d1elua_          83 VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLW  156 (381)
T ss_dssp             HHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCT
T ss_pred             cchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc------cccccccccccc
Confidence            88887 5799999999999987665433    357888887754   233344444433221      478999999999


Q ss_pred             CCCCccChHHHHHHHHHc----CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CC-ceeeccHH
Q 011567          257 NSGQIAPLDELIRLKEKY----RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSAR  330 (483)
Q Consensus       257 ~~G~i~~L~~l~~l~~k~----~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~G-G~i~~~~~  330 (483)
                      ++|.+.|+++|.++|+++    ++++++|++|+.|...         +++...++|++++|++|+++. .| |++..+++
T Consensus       157 ~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~---------~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~  227 (381)
T d1elua_         157 NTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD  227 (381)
T ss_dssp             TTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred             cccccchhhHHHHHHhhccccccccccccccccccccc---------ccccccccccccccccccccccchhhHHHhhHH
Confidence            999999999999999984    6999999999876432         333334569999999999973 34 67777766


Q ss_pred             HHHHHHhcCCc------------e-------ee-cCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccC
Q 011567          331 VVDHQRLSSSG------------Y-------VF-SASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDI  387 (483)
Q Consensus       331 ~~~~~~~~~~~------------~-------~f-s~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~  387 (483)
                      ..+.+.....+            .       .| .++.+.....+..++++.+...   ....++..++.+++.++|+++
T Consensus       228 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  307 (381)
T d1elua_         228 CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL  307 (381)
T ss_dssp             TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC
Confidence            65544311110            0       01 1234555556666777766532   345678888999999999999


Q ss_pred             CCceeecC--CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH
Q 011567          388 HGLSIASN--PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       388 ~~~~i~~~--~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      +++.+.++  +.++++.+.+.....        .+++++ .|+++||.++....        |..||+|++..+|++|||
T Consensus       308 ~~~~~~~~~~~~~~~vsf~~~~~~~--------~~~i~~-~L~~~gi~v~~~~~--------~~~lRis~~~~nt~edid  370 (381)
T d1elua_         308 PHVHCLATSAPQAGLVSFTVDSPLG--------HRAIVQ-KLEEQRIYLRTIAD--------PDCIRACCHYITDEEEIN  370 (381)
T ss_dssp             TTEEESCSSCCSSSEEEEEECSSSC--------HHHHHH-HHHHTTEECEEETT--------TTEEEEECCTTCCHHHHH
T ss_pred             CCeEecCCCCccccEEEEEcCCCCC--------HHHHHH-HHHhCCcEEEecCC--------CCEEEEecCCCCCHHHHH
Confidence            89887643  467788888754321        224555 46677998875433        345999999999999999


Q ss_pred             HHHHHHHHH
Q 011567          466 KACESLKRI  474 (483)
Q Consensus       466 ~~~~~l~~~  474 (483)
                      +++++|+++
T Consensus       371 ~ll~~l~e~  379 (381)
T d1elua_         371 HLLARLADF  379 (381)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhh
Confidence            999999864

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3.5e-24  Score=212.77  Aligned_cols=334  Identities=17%  Similarity=0.197  Sum_probs=228.3

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~  182 (483)
                      .|+++|||+.++. ++..++.+++++.+.+.+--.+++.   ..|..++.+.+.+.+.+..|.    +..++.+++++++
T Consensus        26 ~G~~vI~l~~G~p-~~~~p~~i~~~~~~~~~~~~~~Y~~---~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al  101 (375)
T d1o4sa_          26 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVKYTD---PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL  101 (375)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCCCCC---TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred             CCCCeEECCCcCC-CCCCCHHHHHHHHHHHhcCCcCCCC---CcCCHHHHHHHHhhhhhccccccccccccccCcHHHHH
Confidence            4788999998855 4545688999999988762222222   234555555555555555442    3566677888999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      ..++.+++++||.|++..+++..........+.....+...+    ..+.+........       .++++++..++|++
T Consensus       102 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP~NPT  174 (375)
T d1o4sa_         102 FNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-------KTKAVLINSPNNPT  174 (375)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-------TEEEEEEESSCTTT
T ss_pred             HHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhcc-------CccEEEEeCCCCCc
Confidence            999999999999999999998888888888887776655431    1122222222221       35677777779999


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV  332 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~  332 (483)
                      |.+.+   +++|+++|++|+++||.||+|.....+..........+.  .+..++++|+||+++.+|   ||++++++++
T Consensus       175 G~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~  252 (375)
T d1o4sa_         175 GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG--FDRIVYINGFSKSHSMTGWRVGYLISSEKVA  252 (375)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS--STTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred             cCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC--CCCEEEEeechhhccCCccccccccccccch
Confidence            99988   788999999999999999999876554322222122221  234688899999998655   9999999988


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      +.+.......  ....+......+   ...++. .....+.++++.+.+.+.|++. |+.+..+..+.++++.++..   
T Consensus       253 ~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~~---  323 (375)
T d1o4sa_         253 TAVSKIQSHT--TSCINTVAQYAA---LKALEVDNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRGD---  323 (375)
T ss_dssp             HHHHHHHHHH--TCSCCHHHHHHH---HHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSSC---
T ss_pred             hhhhhhhccc--cccccccchhhh---hhhcccchhhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCCC---
Confidence            7765432221  222223222222   222332 3456778888899999999886 88877665677888887531   


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                         +    .+++.++++++||.+.++.....     ++.+||++.  .+++++++++++|+++++
T Consensus       324 ---~----~~~~~~ll~~~gV~v~pG~~F~~-----~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         324 ---D----VKFCERLLEEKKVALVPGSAFLK-----PGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             ---H----HHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             ---H----HHHHHHHHHhCCEEEEEccccCC-----CCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence               1    24566677777999998765432     345999985  589999999999998874

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.93  E-value=1.1e-24  Score=218.06  Aligned_cols=340  Identities=12%  Similarity=0.079  Sum_probs=221.9

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEeccc
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYG  178 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG  178 (483)
                      .|+++|||+.+++ .+..+|.|++|+.+.+++.-.++  +   .|.    .+|++.+|+++    |.    ++.++.+++
T Consensus        29 ~g~~vi~l~~g~p-df~~p~~v~~al~~~~~~~~~~Y--~---~g~----~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~   98 (394)
T d1c7na_          29 VGNEVVPLSVADM-EFKNPPELIEGLKKYLDETVLGY--T---GPT----EEYKKTVKKWMKDRHQWDIQTDWIINTAGV   98 (394)
T ss_dssp             CCTTCCCCCSSSC-SSCCCHHHHHHHHHHHHHCCCSS--B---CCC----HHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred             cCCCeEEccCCCC-CCCCCHHHHHHHHHHHhCCCcCC--C---CCC----HHHHHHHHHHHHHhcCCCCCCcceEeeccc
Confidence            4678899988765 57678999999999998621221  1   122    35666666654    53    355666777


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      .+++..++++++++||.|++..+.+..........+...+.++.        .|.+.++.....         ..+++++
T Consensus        99 ~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~i~  169 (394)
T d1c7na_          99 VPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---------KNNKALL  169 (394)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---------TTEEEEE
T ss_pred             hhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc---------ccceEEE
Confidence            79999999999999999999999888888888888877766542        144555444321         1367888


Q ss_pred             EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ce
Q 011567          251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GF  324 (483)
Q Consensus       251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~  324 (483)
                      +...+|++|.+.+   +++|+++|++|++++|+||+|+..++................+..+++.|+||+++..|   |+
T Consensus       170 l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~  249 (394)
T d1c7na_         170 FCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN  249 (394)
T ss_dssp             EESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEE
T ss_pred             ecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccccc
Confidence            8888999999998   78899999999999999999987665421111111111001123577889999998554   54


Q ss_pred             -eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEE
Q 011567          325 -CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIV  401 (483)
Q Consensus       325 -i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~~i~  401 (483)
                       ++.++.+.+.++..... ....+.+....+++........+ ..+..+.++++.+.+.+.++. .+++.+..+..+.++
T Consensus       250 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~  328 (394)
T d1c7na_         250 IIIKNPDIRERFTKSRDA-TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQ  328 (394)
T ss_dssp             EECCCHHHHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEE
T ss_pred             ccccChhhhhhhhhhhhh-ccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEE
Confidence             45556666655433211 22223334444444333332221 134556666667777776654 346665545567778


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ++.++....    +   ..++++.++++.||.+.++......   .+.-+||++.  .++++|++++++|+++++++
T Consensus       329 ~~~~~~~~~----~---~~~~~~~Ll~~~gV~v~pG~~Fg~~---~~~~iRis~~--~~~e~i~eal~rl~~~l~~L  393 (394)
T d1c7na_         329 WIDFRALKM----D---HKAMEEFMIHKAQIFFDEGYIFGDG---GIGFERINLA--APSSVIQESLERLNKALKDL  393 (394)
T ss_dssp             EEECGGGCC----C---HHHHHHHHHHTTCCCCEEGGGGCGG---GTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCC----C---HHHHHHHHHHhCCEEEEcchhhCCC---CCCEEEEEEe--CCHHHHHHHHHHHHHHHHhc
Confidence            888753211    1   2357777888889999987654311   0123999975  57899999999999999875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.93  E-value=2.4e-24  Score=216.10  Aligned_cols=355  Identities=14%  Similarity=0.128  Sum_probs=222.9

Q ss_pred             CeeEEEeecCCC--CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHH
Q 011567          108 GKEVVNFASANY--LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLST  181 (483)
Q Consensus       108 G~~~id~~s~~~--lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a  181 (483)
                      ++++|||+.+++  --+ +.+.+.+++.+.++..+....+.....|..++...+++.+.+.+|.    ++.+++++++++
T Consensus        28 ~~~~i~l~~G~P~~~~~-P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~a  106 (403)
T d1wsta1          28 TSDVISLAGGLPAPETF-PVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQA  106 (403)
T ss_dssp             SSSCEECCCCCCCGGGS-CHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHH
T ss_pred             CCCcEECCCCCCCcccc-CHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHH
Confidence            345799987632  111 3346677777766543211101111334444444445555444442    344555666799


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      +..++.+++++||.|++..++|..+...+...+.+++.++.+    +...+..........   .+....++++...+++
T Consensus       107 l~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~NP  183 (403)
T d1wsta1         107 LDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQ---GKRVKIVYTVSTFQNP  183 (403)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT---TCCCCEEEECCSSCTT
T ss_pred             HHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhc---cccccccccccccCCC
Confidence            999999999999999999999999999999999888777653    344444333322211   2234667777778889


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCCceeeccHHHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVV  332 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~  332 (483)
                      +|.+.+   +++|+++|++|+++||+||+|....++.  .........+..+..++++|+||.++  ...||++++++++
T Consensus       184 tG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i  261 (403)
T d1wsta1         184 AGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSG--EPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLI  261 (403)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS--CCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHH
T ss_pred             CCccCCHHHHHHHHHHHHhcCceeccccchhheecCC--CCCCcccccCCCCcEEEEccccceecCcccccccccchHHH
Confidence            999988   6889999999999999999998655542  21111111122345788999999995  3349999999988


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHH--HHhc-CcHHHHHHHHHHHHHHHhhccC--CCceeecCCCCCEEEEEecC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAID--VLEE-NPDLITKLKKNTAILRTGLSDI--HGLSIASNPESPIVFLILEK  407 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~--~l~~-~~~~~~~l~~~~~~l~~~L~~~--~~~~i~~~~~~~i~~l~l~~  407 (483)
                      +.+...........  ++....+..+.+.  ..+. ..+.++.++++.+.+.+.|.+.  .++....+..+.++++.++.
T Consensus       262 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~  339 (403)
T d1wsta1         262 RKMEIAKQSIDLCT--NTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPE  339 (403)
T ss_dssp             HHHHHHHHHHHSSC--CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCT
T ss_pred             HHHHHHHhhhcccc--ccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCC
Confidence            87654322222222  2333222222222  1111 1345666666777777777653  35666656678888888864


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ...        ...+++.++ ++||.+.++........ .+..+||+++. .+++++++++++|++++++.+++
T Consensus       340 ~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~-~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         340 GID--------TKLMMERAV-AKGVAYVPGEAFFVHRD-KKNTMRLNFTY-VPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             TCC--------TTTTHHHHH-HTTEECEEGGGGSTTCC-CCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--------HHHHHHHHH-HCCEEEEechhhcCCCC-CCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence            321        113555544 56999998754332111 23459999854 68999999999999999987764

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=9e-24  Score=212.89  Aligned_cols=352  Identities=11%  Similarity=0.126  Sum_probs=235.8

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHHHHHh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLSTMFS  184 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~a~~~  184 (483)
                      ++|||+.+++ .+..++.+++++.++++....+..+.....|..++.+.+++.+.+.+|.     ++.++.+++.+|+..
T Consensus        27 ~~I~L~~G~P-d~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~  105 (418)
T d2r5ea1          27 KPLNLGQGFP-DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA  105 (418)
T ss_dssp             CCEECSSSCC-SSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             CCEEccCCCC-CCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhh
Confidence            5799998865 3445678999999998764322222222456666666777777766663     345555666799999


Q ss_pred             hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---C---------HHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---D---------MDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      ++.+++++||.|+++.+++..+...+...+.+++.++..   +         ..+++++......       .++++++.
T Consensus       106 ~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~  178 (418)
T d2r5ea1         106 TIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE-------KTKMIIIN  178 (418)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT-------TEEEEEEE
T ss_pred             hhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc-------cccceecC
Confidence            999999999999999999999999999999888776532   0         1123333222222       36788888


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---cee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFC  325 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i  325 (483)
                      +.+|++|.+.+   +++|+++|++||+++|.||+|....+..... .+....+.  .+..+++.|+||.++.+|   ||+
T Consensus       179 ~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~pGlRiG~~  256 (418)
T d2r5ea1         179 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM--WERTITIGSAGKTFSLTGWKIGWA  256 (418)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT--GGGEEEEEEHHHHTTCGGGCCEEE
T ss_pred             CcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccc--cceeeeeecCCccccCCCcccccc
Confidence            88999999988   7889999999999999999998876643221 11222221  234678899999998667   999


Q ss_pred             eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH----hcC----cHHHHHHHHHHHHHHHhhccCCCceeecCCC
Q 011567          326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EEN----PDLITKLKKNTAILRTGLSDIHGLSIASNPE  397 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l----~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~  397 (483)
                      ++++++++.+........++.+ ++...+ +...+...    +..    .++++.++.+.+.+.+.|+++ |+.+..+..
T Consensus       257 ~~~~~~i~~~~~~~~~~~~~~~-~~~q~a-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~g  333 (418)
T d2r5ea1         257 YGPEALLKNLQMVHQNCVYTCA-TPIQEA-IAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQG  333 (418)
T ss_dssp             ESCHHHHHHHHHHHTTTTCSCC-HHHHHH-HHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSB
T ss_pred             cccchhhhhhhhcccccccccc-cchhhh-ccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCc
Confidence            9999998877554333333332 233333 32232211    111    246777788889999999987 888877767


Q ss_pred             CCEEEEEecCCCCCc----hhhHHHHHHHHHHHHHhCCEEEEeecccccccCC--CCCceEEEccCCCCHHHHHHHHHHH
Q 011567          398 SPIVFLILEKSTGSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR--LPVGIRLFVSAAHSEADLVKACESL  471 (483)
Q Consensus       398 ~~i~~l~l~~~~~~~----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~--~~~~lRi~~~~~~t~edi~~~~~~l  471 (483)
                      +.++++.+.......    ..+.....++++.++++.||.+.|+.....+...  ...-+||++.  .++|++++++++|
T Consensus       334 g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--~~~e~l~~a~~rl  411 (418)
T d2r5ea1         334 GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEIL  411 (418)
T ss_dssp             SSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECC--SCHHHHHHHHHHH
T ss_pred             eeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEec--CCHHHHHHHHHHH
Confidence            888888875321110    0011223467888888889999987543221110  0123999984  4899999999999


Q ss_pred             HHHHH
Q 011567          472 KRISA  476 (483)
Q Consensus       472 ~~~~~  476 (483)
                      ++.+.
T Consensus       412 ~~~lg  416 (418)
T d2r5ea1         412 RKWKG  416 (418)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98763

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=1e-23  Score=210.86  Aligned_cols=343  Identities=15%  Similarity=0.109  Sum_probs=225.9

Q ss_pred             ECCeeEEEeecCCC--CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccH
Q 011567          106 ISGKEVVNFASANY--LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGL  179 (483)
Q Consensus       106 ~~G~~~id~~s~~~--lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~  179 (483)
                      .+|+++|||+.+++  ..+..++.+++++.++++....+++.   ..|..++.+.+.+.+.+..|.    ++.++.+++.
T Consensus        27 ~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~  103 (395)
T d1xi9a_          27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGD---SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT  103 (395)
T ss_dssp             HTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred             HCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHhhhhcccccccccccccccccc
Confidence            46889999999864  46766788999999999763222211   334455555555556555564    3456667777


Q ss_pred             HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +++..++.++..+||.|++..++|..+...++..|.+++.++..       |++++++.+   .+       .++++++.
T Consensus       104 ~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~---~~-------~~~~v~l~  173 (395)
T d1xi9a_         104 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI---TD-------RTKAIAVI  173 (395)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC---CT-------TEEEEEEE
T ss_pred             hhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhh---cc-------cccEEEec
Confidence            89999999999999999999999999999999999988777532       444544433   22       25566666


Q ss_pred             cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      .++|++|.+.+   +++|+++|++|++++|.||+|+...++.......   .+.+.+..|++.|+||+++.+|   ||++
T Consensus       174 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~---~~~~~~~vi~~~S~SK~~~~~GlRvG~~~  250 (395)
T d1xi9a_         174 NPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPG---SLTKDVPVIVMNGLSKVYFATGWRLGYMY  250 (395)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHH---HHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred             CCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchh---hcCCCCCEEEEeCcchhcccchhhcEeeE
Confidence            66899999998   7999999999999999999998766543222111   1222333588899999998655   7754


Q ss_pred             c--cHHHHHHHHh---cCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCE
Q 011567          327 G--SARVVDHQRL---SSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI  400 (483)
Q Consensus       327 ~--~~~~~~~~~~---~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i  400 (483)
                      .  ....+..++.   ........  .+.....++..+++..+ ...+.++.++++.+.+.+.|.++.++.+..+..+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~  328 (395)
T d1xi9a_         251 FVDPENKLSEVREAIDRLARIRLC--PNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY  328 (395)
T ss_dssp             EECTTCTTHHHHHHHHHHHHHTCC--SCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE
T ss_pred             ecCHHHHHHHHHHHHHHhhcCCCC--cCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEE
Confidence            3  3222221111   10011111  12222333333333111 113466778889999999999886666665556788


Q ss_pred             EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       401 ~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +++.+......  .+    .+++.+++++.||.+.++......   .+.-+||++.  .++|+++++++.|++++++
T Consensus       329 ~~~~l~~~~~~--~~----~~~~~~ll~~~gV~v~PG~~Fg~~---~~~~~Ris~~--~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         329 IFPKIEVGPWK--ND----KEFVLDVLHNAHVLFVHGSGFGEY---GAGHFRAVFL--PPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             ECCEECSCSCS--SH----HHHHHHHHHHHCEECEEGGGGCGG---GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             EeEECCCCCCC--CH----HHHHHHHHHhCCEEEEcChhhCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence            88888543211  12    245666787789999987643211   0233999874  5889999999999998764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-23  Score=211.19  Aligned_cols=334  Identities=12%  Similarity=0.109  Sum_probs=231.2

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhh
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSA  185 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~a  185 (483)
                      |+|-++.   |. .++.+.+++.+.+++.-.+...+....+  ..+..++.++.+|+++|.   ++.++.+++++++..+
T Consensus        25 Yld~a~~---~~-~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~  100 (405)
T d1jf9a_          25 YLDSAAS---AQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLV  100 (405)
T ss_dssp             ECCTTTC---CC-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred             EEeCccc---cC-CCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHH
Confidence            6665554   43 5688999999988763211111111111  124567888999999984   2455557778887766


Q ss_pred             hhh----hccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          186 IPC----FCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       186 i~~----~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      +.+    ..++||.|++....|.+...+.    +..|.++..++.+     |.+.+++.+.   +       ++++|+++
T Consensus       101 ~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~---~-------~t~lv~~~  170 (405)
T d1jf9a_         101 ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD---E-------KTRLLAIT  170 (405)
T ss_dssp             HHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC---T-------TEEEEEEE
T ss_pred             HhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhcc---C-------CcEEEEEe
Confidence            654    3578999998888887765544    3457888888754     4555554432   2       48999999


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV  331 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~  331 (483)
                      .+.+.+|.+.|+++|.++|+++|+++++|.+|+.|.+.         +++...++|++++|.+|++|+.| |++..+++.
T Consensus       171 ~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~---------id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~  241 (405)
T d1jf9a_         171 HVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP---------VDVQALDCDFYVFSGHKLYGPTGIGILYVKEAL  241 (405)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHH
T ss_pred             cCCCcccccCchHHhhhHHHHcCCeeecccceeccccc---------cchhhcCCceeeccccccccCCCceeeeechhh
Confidence            99999999999999999999999999999999977542         23323446999999999999776 888888877


Q ss_pred             HHHHHhcCC-------------------ceeec-CCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCC
Q 011567          332 VDHQRLSSS-------------------GYVFS-ASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       332 ~~~~~~~~~-------------------~~~fs-~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      .+.......                   ...|. ++.+...++++.++++++.+  .+.+.++.+.+.+++.+.+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~  321 (405)
T d1jf9a_         242 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPD  321 (405)
T ss_dssp             HTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCc
Confidence            665332110                   01122 34566677777788887764  245777778888888888888765


Q ss_pred             ceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---ccCCCCCceEEEccCCCCHHHHH
Q 011567          390 LSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSEADLV  465 (483)
Q Consensus       390 ~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---~~~~~~~~lRi~~~~~~t~edi~  465 (483)
                      ..+.. ...++++.+.++...         ..++.. .|.++||.++.+..+..   .....++.+|++++..+|++|||
T Consensus       322 ~~~~~~~~r~~ivsf~~~~~~---------~~~~~~-~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid  391 (405)
T d1jf9a_         322 LTLYGPQNRLGVIAFNLGKHH---------AYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD  391 (405)
T ss_dssp             EEEESCTTCCSEEEEEETTCC---------HHHHHH-HHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHH
T ss_pred             ccccCCcCcCcEEEEEcCCCC---------HHHHHH-HHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHH
Confidence            55443 345788888885321         123444 46678999886543221   11122345999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          466 KACESLKRISAV  477 (483)
Q Consensus       466 ~~~~~l~~~~~~  477 (483)
                      +++++|+++.+-
T Consensus       392 ~l~~~l~~i~r~  403 (405)
T d1jf9a_         392 RLVTGLQRIHRL  403 (405)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=3.4e-25  Score=219.32  Aligned_cols=323  Identities=16%  Similarity=0.169  Sum_probs=210.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhhhhhhccCCc
Q 011567          118 NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSAIPCFCKKGD  194 (483)
Q Consensus       118 ~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~ai~~~~~~gd  194 (483)
                      ++.|+.+++.+.++..+.++.|.          |......++++..++.++.   ++++++++|++|+.+++.++.++++
T Consensus        24 ~~~gl~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~~   93 (366)
T d2aeua1          24 DLSGLSGGFLIDEKDKALLNTYI----------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKV   93 (366)
T ss_dssp             ECSSCCCCCCCCHHHHHHHTSTT----------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSEE
T ss_pred             hhccCCCCCCccHHHHHHHHHhc----------CchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCCE
Confidence            34567677777778777787752          2233567788887887763   4577889999999999999987777


Q ss_pred             EEEE-cCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCC-CCCccChHHHHHHHH
Q 011567          195 LIVA-DEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAPLDELIRLKE  272 (483)
Q Consensus       195 iI~~-~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~-~G~i~~L~~l~~l~~  272 (483)
                      +|++ +.+.|.++..++++.|.++  ++++|+++|++.+.+          ++++|+++.+.++ .+.+.+|++|+++|+
T Consensus        94 vi~~~~~~~~~~~~~~~~l~g~~~--v~~~d~e~l~~~i~~----------~tk~i~~~~p~n~~~~~~~~l~~i~~ia~  161 (366)
T d2aeua1          94 IHYLPELPGHPSIERSCKIVNAKY--FESDKVGEILNKIDK----------DTLVIITGSTMDLKVIELENFKKVINTAK  161 (366)
T ss_dssp             EEECSSSSCCTHHHHHHHHTTCEE--EEESCHHHHHTTCCT----------TEEEEEECBCTTSCBCCHHHHHHHHHHHH
T ss_pred             EEEecCCCcchhHHHHHHhcCCeE--ECCCCHHHHHHhcCC----------CceEEEEEecCCCCcCCHHHHHHHHHHhc
Confidence            7666 4689999999999999875  466788877765533          3778888776554 567788999999999


Q ss_pred             HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHHhcCCceeecCCCcHH
Q 011567          273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRLSSSGYVFSASLPPY  351 (483)
Q Consensus       273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~  351 (483)
                      +||+++|+||+|+.++++..+.+....++     +|++++|++|+++ ..+||+++++++++.++.....  ++.+.+|.
T Consensus       162 ~~~~~~i~De~y~~~~~~~~~~~~~~~~~-----~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~--~g~~~~~~  234 (366)
T d2aeua1         162 NKEAIVFVDDASGARVRLLFNQPPALKLG-----ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK--FGLEAQPP  234 (366)
T ss_dssp             HHTCCEEEECTTHHHHHHHTTCCCHHHHT-----CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT--TTCBCCHH
T ss_pred             cCcEEEEEecCccccccccccCCCHhhcC-----ceEEEecccccccccceeEEEecHHHHHHHHHHHhc--ccccCCHH
Confidence            99999999999998877654444333333     4899999999996 4569999999999988765322  33345677


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHH--------HHHHHhhccCCCceeec--CCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567          352 LASAAITAIDVLEENPDLITKLKKNT--------AILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGSMKNDLQLLED  421 (483)
Q Consensus       352 ~~aaa~~al~~l~~~~~~~~~l~~~~--------~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~~~~~  421 (483)
                      .+.++.++|+.+.-  ...++..++.        +.+.......++.....  ......++.....   ..........+
T Consensus       235 ~~~a~~~aL~tl~~--~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  309 (366)
T d2aeua1         235 LLAGIYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK---DDTINIKKLIE  309 (366)
T ss_dssp             HHHHHHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES---SHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCc---ceeecccCHHH
Confidence            77777777764421  1122222222        22222233333322111  1122222222211   11112233456


Q ss_pred             HHHHHHHhCCEEEEeecc-cccccCCCCCceEEEccCCCCHH-HHHHHHHHHHHHHHHHH
Q 011567          422 IADWALKEDGVFVVTSKR-SMLDKCRLPVGIRLFVSAAHSEA-DLVKACESLKRISAVVL  479 (483)
Q Consensus       422 i~~~~l~~~Gv~v~~~~~-~~~~~~~~~~~lRi~~~~~~t~e-di~~~~~~l~~~~~~~~  479 (483)
                      ++.+++++.||.+.+... |..     ...|||++....+++ +.+++.+++.+.++..+
T Consensus       310 ~a~~Ll~~~gV~~ip~~~~p~~-----~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~  364 (366)
T d2aeua1         310 IGFNLLKNYGIITITVAGMPGA-----SKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  364 (366)
T ss_dssp             HHHHHHHHHCEECSTTSSSCSS-----CCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCEEEEECCCCCCC-----CCEEEEeccccchhhCCHHHHHHHHHHHHHHHh
Confidence            788888888998765432 211     234999998655444 45666666666666544

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=9e-23  Score=201.40  Aligned_cols=337  Identities=14%  Similarity=0.053  Sum_probs=216.4

Q ss_pred             EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHHHhhhh
Q 011567          112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTMFSAIP  187 (483)
Q Consensus       112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~~~ai~  187 (483)
                      |+|.-++. .+..+|.|.+|+.+.++.--.+++.   ..| .+..+.+++.+++.+|.    ++.++.+++++++..++.
T Consensus         2 ~~~~~~~~-df~~p~~i~eal~~~~~~~~~~Y~~---~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~   76 (361)
T d1d2fa_           2 LPFTISDM-DFATAPCIIEALNQRLMHGVFGYSR---WKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIR   76 (361)
T ss_dssp             EECCSSSC-SSCCCHHHHHHHHHHHTTCCCCCCC---SCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred             cCcCCCCC-CCCCCHHHHHHHHHHHhCCCCCCCC---CCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhh
Confidence            55555543 4666799999999988752122211   122 33445555555555564    345666777799999999


Q ss_pred             hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      +++++||.|++..++|..+...++..+.+++.++.        .|++.+++.+.+.         +++++++.+.+|++|
T Consensus        77 ~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~---------~~~~i~l~~p~NPTG  147 (361)
T d1d2fa_          77 QWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP---------ECKIMLLCSPQNPTG  147 (361)
T ss_dssp             HSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST---------TEEEEEEESSCTTTC
T ss_pred             hccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccC---------CceeEEecccccccc
Confidence            99999999999999999998888888888776643        2666666666332         367778888899999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeecc-HHHH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS-ARVV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~-~~~~  332 (483)
                      .+.+   +++|+++|++||+++|+||+|+...++.......  .... .+..+++.|++|+++..|   ||+... ....
T Consensus       148 ~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~--~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~  224 (361)
T d1d2fa_         148 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW--SNVA-RGDWALLTSGSKSFNIPALTGAYGIIENSSSR  224 (361)
T ss_dssp             CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCG--GGTC-CSSEEEEECSHHHHTCGGGCCEEEEECSHHHH
T ss_pred             cccchhhhhhhhhhhhhhheeeeeccccccccccccccccc--cccc-ccccccccccccccccccccceeeecchhHHH
Confidence            9887   7899999999999999999998776653222222  2222 223567789999997444   876443 3332


Q ss_pred             HH-HHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEEEEecCCC
Q 011567          333 DH-QRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       333 ~~-~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +. +.........+ +.+...++++..+++...+ ..+.+..++++.+.+.+.+.+ .+++.+..+..+.++++.+....
T Consensus       225 ~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~  303 (361)
T d1d2fa_         225 DAYLSALKGRDGLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN  303 (361)
T ss_dssp             HHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC
T ss_pred             HHHhhhcccccccc-cchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC
Confidence            22 22111111111 2333444444444443221 134556666666666665543 34555554545677788774321


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .    +   ..+++++++++.||.+.++.....+   ..+.+|+++.  .++++++++++.|+++++++
T Consensus       304 ~----~---~~~~~~~Ll~~~gv~v~pG~~F~~~---~~~~vRis~~--~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         304 I----D---DNALQKALIEQEKVAIMPGYTYGEE---GRGFVRLNAG--CPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             C----C---HHHHHHHHHHTTCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             C----C---HHHHHHHHHHhCCEEEEeccccCCC---CCCEEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence            1    1   2367788888889999987653211   0123999974  68899999999999999875

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.2e-24  Score=214.24  Aligned_cols=360  Identities=15%  Similarity=0.158  Sum_probs=230.9

Q ss_pred             CCeeEEEeecCCC-CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHH
Q 011567          107 SGKEVVNFASANY-LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLS  180 (483)
Q Consensus       107 ~G~~~id~~s~~~-lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~  180 (483)
                      .++++|||+.+++ ....+.+.+.+++.+.++.......+.....|..++.+.+++.+.+..|.     ++.++.+++++
T Consensus        36 ~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~  115 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  115 (420)
T ss_dssp             TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhh
Confidence            4567999998632 11113456677777777653211111111345555556666666655553     23455566679


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      ++..++.+++++||.|+++.+++..+...++..|.++..++.+    |++.++..+.+..... +.+..++++++.+.+|
T Consensus       116 al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~N  194 (420)
T d1vp4a_         116 ALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNG-KIKQVKFIYVVSNFHN  194 (420)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTT-CGGGEEEEEEECSSCT
T ss_pred             hHHHHHHhhhccccccccccccccchhHHHHHHhhhcccccccccccccchhhhhhhhhHHHh-hccccceeeEecCCCC
Confidence            9999999999999999999999999999999999988877653    5677777665433221 1223456777778888


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCCceeeccHHH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARV  331 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~  331 (483)
                      ++|.+.+   +++|+++|++|++++|+||+|+...++..........  ...+..++++|++|.++  ...||+++++++
T Consensus       195 PtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~--~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~  272 (420)
T d1vp4a_         195 PAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI--GGPERVVLLNTFSKVLAPGLRIGMVAGSKEF  272 (420)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH--HCTTTEEEEEESTTTTCGGGCEEEEECCHHH
T ss_pred             ccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc--ccccceeEEeccccccccccccccccccchh
Confidence            9999887   7999999999999999999998765543211111111  11334577788899875  234999999999


Q ss_pred             HHHHHhcCCceeecCCCcHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHhh----ccCCCceeecCCCCCEEEEE
Q 011567          332 VDHQRLSSSGYVFSASLPPYLASAAITAIDV---LEENPDLITKLKKNTAILRTGL----SDIHGLSIASNPESPIVFLI  404 (483)
Q Consensus       332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~---l~~~~~~~~~l~~~~~~l~~~L----~~~~~~~i~~~~~~~i~~l~  404 (483)
                      ++.+......+..+  .+....+++...++.   .+...+.++.++++.+.+.+.|    .+++|+++..+..+.++++.
T Consensus       273 i~~l~~~~~~~~~~--~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~  350 (420)
T d1vp4a_         273 IRKIVQAKQSADLC--SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLT  350 (420)
T ss_dssp             HHHHHHHHHHHHSS--CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEE
T ss_pred             hhhhhhhhhhcccc--CchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEE
Confidence            98875543232222  234433333333321   1122334555555555555544    45568888766677889998


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011567          405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDR  482 (483)
Q Consensus       405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~~  482 (483)
                      +++....        .++++.+ ++.||.+.++........ .+..+||+++. .+++++++++++|++++++.-+++
T Consensus       351 ~~~~~d~--------~~~~~~l-~~~gV~v~PG~~F~~~~~-~~~~iRls~~~-~~~e~l~~a~~rL~~~l~~~~~~~  417 (420)
T d1vp4a_         351 LPEGFDT--------WEMFEYA-KRKKVFYVPGRVFKVYDE-PSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKEK  417 (420)
T ss_dssp             CCTTCCT--------TTTHHHH-HHHTEECEEGGGGCTTCC-CCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCH--------HHHHHHH-HHCCeEEEechhhCCCCC-CCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHhhHhh
Confidence            8643211        1244544 455999998765432211 13459999853 688999999999999999876654

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.92  E-value=8.4e-23  Score=206.50  Aligned_cols=318  Identities=15%  Similarity=0.111  Sum_probs=208.5

Q ss_pred             ccChHHHHHHHHHHHhhhCC------CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhh-cCCeEEEecC
Q 011567          150 YGTIDVHLDCEARIAKFLGT------PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL-SRSTVVYFKH  222 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g~------e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~-s~~~v~~~~~  222 (483)
                      .|..++...+++.+.+++|.      ++.++.+++++++..++.+++++||.|++..++|......+.. .|.+++.++.
T Consensus        84 ~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~  163 (431)
T d1m7ya_          84 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHC  163 (431)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEEC
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccc
Confidence            34444555555555555441      2455556677999999999999999999999999887777764 4677776653


Q ss_pred             C-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC
Q 011567          223 N-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS  292 (483)
Q Consensus       223 ~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~  292 (483)
                      +       |++.+++.+.+....    ..+++++++...++++|.+.+   +++|+++|++||+++|+||+|+...++..
T Consensus       164 ~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~  239 (431)
T d1m7ya_         164 TSSNGFQITETALEEAYQEAEKR----NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP  239 (431)
T ss_dssp             CGGGTSCCCHHHHHHHHHHHHHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred             cchhcccccHHHhhhhhhhhhhc----cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC
Confidence            2       677888877664332    224677777778899999988   88999999999999999999987665431


Q ss_pred             CC-ccccc---cCCC----CCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHH
Q 011567          293 GR-GLTEH---CGVP----VDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAID  361 (483)
Q Consensus       293 G~-g~~~~---~~v~----~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~  361 (483)
                      .. .+.+.   ....    ..+..+++.|+||.+|..|   ||++++++.+.........+....+.....+++.+....
T Consensus       240 ~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~  319 (431)
T d1m7ya_         240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKK  319 (431)
T ss_dssp             CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHH
T ss_pred             CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccch
Confidence            10 01110   0110    0123578899999998555   899888776544332222221111111222222222222


Q ss_pred             HHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567          362 VLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS  440 (483)
Q Consensus       362 ~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~  440 (483)
                      ..++ ..+.+.+++++.+.+.+.|++ .|+++..+..+.++++.++......  ......+++++++++.||.+.++...
T Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~~--~~~~~~~l~~~ll~~~gV~v~PG~~F  396 (431)
T d1m7ya_         320 LTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYEVHLNISPGSSC  396 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSSSEEEEECGGGSSSS--SHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecCCceeEEEEECccccccC--cccCHHHHHHHHHHHCCEEEEecccc
Confidence            2221 234677788888899999987 4999887667888888886432111  11223467788888889999987643


Q ss_pred             ccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567          441 MLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       441 ~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~  478 (483)
                      ...   .++.+||++. ..+++++++++++|++++++.
T Consensus       397 ~~~---~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         397 HCT---EPGWFRVCFA-NLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             TCS---STTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---CCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence            221   1234999984 367889999999999998764

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=9.4e-23  Score=204.97  Aligned_cols=347  Identities=14%  Similarity=0.153  Sum_probs=220.6

Q ss_pred             CCeeEEEeecCCC-CCC--CCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC----------CCCEE
Q 011567          107 SGKEVVNFASANY-LGL--IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----------TPDSI  173 (483)
Q Consensus       107 ~G~~~id~~s~~~-lG~--~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g----------~e~~i  173 (483)
                      +++++|||+.+++ +..  ...+.+.+++.+.++.....  +.....|..++.+.+++.+.+.++          .++.+
T Consensus        28 ~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~  105 (412)
T d1bw0a_          28 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN--GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV  105 (412)
T ss_dssp             SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS--SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred             CCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCC--CCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence            3467899988743 222  23466777777777653221  111123444444444444444432          23556


Q ss_pred             EecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCcc
Q 011567          174 LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       174 ~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +++++++++..++.+++++||.|++..+++..+...++..|.+++.++..       |.+++++.   ...       .+
T Consensus       106 it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~---~~~-------~~  175 (412)
T d1bw0a_         106 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRL---KDD-------KT  175 (412)
T ss_dssp             EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHH---CCT-------TE
T ss_pred             EecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhh---hhc-------cc
Confidence            66777799999999999999999999999999888899999998877632       33444332   222       36


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc--cccCCCCCceeEEEccccccccCC
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT--EHCGVPVDKIDIVTAAMGHALATE  321 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~--~~~~v~~~~~Di~~~s~~K~lg~~  321 (483)
                      +++++...+|++|.+.+   +++|+++|++|++++|+||+|+...+........  .....+....-++++|+||+++..
T Consensus       176 ~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~  255 (412)
T d1bw0a_         176 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP  255 (412)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG
T ss_pred             cccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccC
Confidence            77777788899999988   7889999999999999999998765532111111  111112122346778999999866


Q ss_pred             C---ceeeccHH------HHHHHHhcCCceeecCCCcHHHHHHHHHHH-HHHh-cCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          322 G---GFCTGSAR------VVDHQRLSSSGYVFSASLPPYLASAAITAI-DVLE-ENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       322 G---G~i~~~~~------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al-~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      |   ||+++++.      ++......   ..+..+.++...+++.+.+ ...+ ...+.+++++++.+.+.+.|.+..|+
T Consensus       256 G~RvG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~  332 (412)
T d1bw0a_         256 GWRLGWLLYVDPHGNGPSFLEGLKRV---GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGL  332 (412)
T ss_dssp             GGCCEEEEEECTTCSCHHHHHHHHHH---HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             CCCcccccccchhhcchhhhhhhccc---cccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCc
Confidence            6   99876532      22222111   1111122233333332222 1111 11356777888899999999887788


Q ss_pred             eeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567          391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES  470 (483)
Q Consensus       391 ~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~  470 (483)
                      .+..+..+.++++++.......   .....+++++++++.||.+.++.....     ++.+||++.  .++++++++++.
T Consensus       333 ~~~~p~gg~~l~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~PG~~Fg~-----~g~iRis~~--~~~e~l~eal~R  402 (412)
T d1bw0a_         333 APTMPRGAMYLMSRIDLEKYRD---IKTDVEFFEKLLEEENVQVLPGTIFHA-----PGFTRLTTT--RPVEVYREAVER  402 (412)
T ss_dssp             EECCCCBTTEEEEEECGGGBSS---CCSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHHH
T ss_pred             eecCCCCceEEEEeCChhhcCC---CCCHHHHHHHHHHhCCEEEEeccccCC-----CCeEEEEEc--CCHHHHHHHHHH
Confidence            8776667788888875321100   011235777888877999998765432     344999874  588999999999


Q ss_pred             HHHHHHHH
Q 011567          471 LKRISAVV  478 (483)
Q Consensus       471 l~~~~~~~  478 (483)
                      |++++++.
T Consensus       403 l~~~l~~~  410 (412)
T d1bw0a_         403 IKAFCQRH  410 (412)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988653

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=1e-22  Score=205.71  Aligned_cols=313  Identities=11%  Similarity=0.108  Sum_probs=203.2

Q ss_pred             ccChHHHHHHHHHHHhhhC------CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhh-cCCeEEEecC
Q 011567          150 YGTIDVHLDCEARIAKFLG------TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL-SRSTVVYFKH  222 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g------~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~-s~~~v~~~~~  222 (483)
                      .|..++.+.+++.+.+.+|      .++.++.+++++++..++.+++++||.|+++.++|..+...+.. .|.+++.++.
T Consensus        83 ~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~  162 (428)
T d1iaya_          83 HGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC  162 (428)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECC
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeec
Confidence            3444444444444444444      23455666677999999999999999999999999888777764 4788877753


Q ss_pred             C-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC
Q 011567          223 N-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS  292 (483)
Q Consensus       223 ~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~  292 (483)
                      .       |.++++..++.....    ..+++++++...+|++|.+.+   +++|+++|++||+++|+||+|+..+++..
T Consensus       163 ~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~  238 (428)
T d1iaya_         163 ESSNNFKITSKAVKEAYENAQKS----NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP  238 (428)
T ss_dssp             CTTTTTCCCHHHHHHHHHHHHHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred             ccccccccccccccchhhhhhcc----CCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc
Confidence            2       567777666543221    123566777777889999988   78899999999999999999987666432


Q ss_pred             CCc-cccccC-----CCCCceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHH--HHHHHHHH
Q 011567          293 GRG-LTEHCG-----VPVDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYL--ASAAITAI  360 (483)
Q Consensus       293 G~g-~~~~~~-----v~~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~--~aaa~~al  360 (483)
                      ... +.+..+     ....+..+++.|+||.++..|   ||+++ ++.+.+..+.....   +....+..  +++.+...
T Consensus       239 ~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~a~l~~~  315 (428)
T d1iaya_         239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF---GLVSTQTQYFLAAMLSDE  315 (428)
T ss_dssp             CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT---SCCCHHHHHHHHHHTTCH
T ss_pred             cccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc---cccccccccchhhhhhhh
Confidence            111 111110     111233577899999997555   88876 55666665543221   11112222  22221111


Q ss_pred             HHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          361 DVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       361 ~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      +.+++ ..+.++.++++.+.+.+.|+.. |+++..+..+.++++.+.......  ......++++.++++.||.+.++..
T Consensus       316 ~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~--~~~~~~~l~~~Ll~~~gV~v~PG~~  392 (428)
T d1iaya_         316 KFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES--TFDSEMSLWRVIINDVKLNVSPGSS  392 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSS--SHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred             ccccccccccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccccC--CCCCHHHHHHHHHHhCCEEEEcchh
Confidence            22221 1346677788888999999874 888876667888898885422111  1222346777888888999998765


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ....   .++.+|+++. ..+++++++++++|++++.
T Consensus       393 F~~~---~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         393 FECQ---EPGWFRVCFA-NMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             GTCS---SSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             cCCC---CCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence            4321   1234999984 4678899999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.91  E-value=3.6e-23  Score=203.82  Aligned_cols=320  Identities=15%  Similarity=0.146  Sum_probs=206.0

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEecccH-HHHHhh
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILYSYGL-STMFSA  185 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~~sG~-~a~~~a  185 (483)
                      .++|||+++ |.+|.  +|.+++++.+.+....        .|... -..+|++.||+++|.+ +.|+.++|+ +++..+
T Consensus        22 ~~~idls~~~np~~~--p~~~~~a~~~~~~~~~--------~Yp~~-~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~   90 (355)
T d1lc5a_          22 DQLLDFSANINPLGM--PVSVKRALIDNLDCIE--------RYPDA-DYFHLHQALARHHQVPASWILAGNGETESIFTV   90 (355)
T ss_dssp             GGSEECSSCCCTTCC--CHHHHHHHHHTGGGGG--------SCCCT-TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             hheEEccCCCCCCCC--CHHHHHHHHHHHHHhc--------cCCCC-ChHHHHHHHHHHhCCCHHHEEecccHHHHHHHH
Confidence            468999998 88886  4889999988776531        12111 1357999999999965 335555555 555555


Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--C-HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--D-MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA  262 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--d-~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~  262 (483)
                      +.++.+.++.|..+...+  +.......+..+..++..  | ...-+.+++....       ++++|++.++++++|.+.
T Consensus        91 ~~~~~~~~~~v~~p~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~v~l~nP~NPtG~~~  161 (355)
T d1lc5a_          91 ASGLKPRRAMIVTPGFAE--YGRALAQSGCEIRRWSLREADGWQLTDAILEALTP-------DLDCLFLCTPNNPTGLLP  161 (355)
T ss_dssp             HHHHCCSEEEEEESCCTH--HHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCT-------TCCEEEEESSCTTTCCCC
T ss_pred             HhhhccccccccCCccce--eccccccccccceeeeeeccCCccceeeeeecccc-------ccceeeeecccCcccccc
Confidence            566655555555544333  334445556666555432  1 1111122222222       255666666789999998


Q ss_pred             C---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH-HHHHH
Q 011567          263 P---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR-VVDHQ  335 (483)
Q Consensus       263 ~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~-~~~~~  335 (483)
                      +   +++|+++|++|++++|+||+|..+...  +........-  .+..+++.|+||++|..|   ||++++.+ +.+.+
T Consensus       162 ~~e~l~~i~~~a~~~~~~li~De~y~~~~~~--~~~~~~~~~~--~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~  237 (355)
T d1lc5a_         162 ERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKD--NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARM  237 (355)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTT--CTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHH
T ss_pred             hhhhhhhhhhhccccccccccccceeeeeee--cccccccccc--cccceeecccccccccccccccceeccchhhhHHH
Confidence            8   788999999999999999999754322  2222221211  223688899999998666   99988755 44555


Q ss_pred             HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567          336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND  415 (483)
Q Consensus       336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~  415 (483)
                      +....++    +.+.+...++.++++......+.+++++++.+++.+.|.+++++.+. +.+++++++.++.+.      
T Consensus       238 ~~~~~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~~~------  306 (355)
T d1lc5a_         238 RRQQMPW----SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCERED------  306 (355)
T ss_dssp             HHHSCTT----CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCTT------
T ss_pred             HhhcCCc----cccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCCCH------
Confidence            4433222    33556666666666533323456778888889999999998888776 457788888875321      


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeec-ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSK-RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~-~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                          .++++.++ ++||++++.. ++..    .+..+||++.   |++|+++++++|++++
T Consensus       307 ----~~~~~~L~-~~gv~vr~~~~f~~~----~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         307 ----IDLQRRLL-TQRILIRSCANYPGL----DSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             ----CCHHHHHH-TTTEECEECTTSTTC----CTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHH-HCCcEEEeCccCCCC----CCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence                13566554 5699998764 3222    1245999974   8999999999998864

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.9e-23  Score=204.34  Aligned_cols=343  Identities=12%  Similarity=0.086  Sum_probs=221.2

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM  182 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~  182 (483)
                      .|+++|||+.+++ .+..++.+.+++.+.... ..+++   ...|..++.+.+++.+.+..|.    ++.++++++++++
T Consensus        26 ~g~~vi~l~~G~p-~~~~p~~~~~al~~~~~~-~~~Y~---~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l  100 (389)
T d2gb3a1          26 RGVRIHHLNIGQP-DLKTPEVFFERIYENKPE-VVYYS---HSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI  100 (389)
T ss_dssp             TTCEEEECSSCCC-CSCCCTHHHHHHHHTCCS-SCCCC---CTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred             cCCCEEECCCCCC-CCCCCHHHHHHHHhcCCC-CCCCC---CCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccc
Confidence            4788999988755 354567777877654322 12111   1334445555555555555553    3455556667889


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHH---HHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD---SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG  259 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~---~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G  259 (483)
                      ..++.+++++||.|++..+++......+...|.+++.++..+..   ..+.+....       ..+++++++...+|++|
T Consensus       101 ~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~nP~NPtG  173 (389)
T d2gb3a1         101 LFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFI-------NERTKGIVLSNPCNPTG  173 (389)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGC-------CTTEEEEEEESSCTTTC
T ss_pred             cccccccccCCCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhc-------ccCccEEEeCCCCcccc
Confidence            99999999999999999999999888888889888777654211   111111111       12467777778889999


Q ss_pred             CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH-HH
Q 011567          260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR-VV  332 (483)
Q Consensus       260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~-~~  332 (483)
                      .+.+   +++|+++|++|++++|.||+|+......  ..... .... .+..+++.|++|.++.+|   ||++++.+ +.
T Consensus       174 ~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~-~~~~-~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~  249 (389)
T d2gb3a1         174 VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG--EFASA-LSIE-SDKVVVIDSVSKKFSACGARVGCLITRNEELI  249 (389)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS--CCCCG-GGSC-CTTEEEEEESTTTTTCGGGCCEEEECSCHHHH
T ss_pred             ccchHHHHHHHHhhcccCCEEEEEecccccccccc--ccccc-cccc-cccccccccccccccCcccceeeeeccchhHH
Confidence            9988   8999999999999999999998765543  22211 1222 233577789999998776   98888654 44


Q ss_pred             HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567          333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS  411 (483)
Q Consensus       333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~  411 (483)
                      +........   ..+.++....++.+.+...+. .++.++.++++.+.+.+.|+++.+.....+..+.++++.++...  
T Consensus       250 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~~--  324 (389)
T d2gb3a1         250 SHAMKLAQG---RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVED--  324 (389)
T ss_dssp             HHHHHHHHH---SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSSC--
T ss_pred             HHHhhhhhc---cccccccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCCC--
Confidence            443322211   112244444444444431111 13467778888999999999874444444557788888875321  


Q ss_pred             chhhHHHHHHHHHHHHHh-----CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKE-----DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~-----~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                             ..+++++++++     .||.+.++..........+..+||++.  .++++++++++.|++++++.+
T Consensus       325 -------~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f~  388 (389)
T d2gb3a1         325 -------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC  388 (389)
T ss_dssp             -------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHHhh
Confidence                   22456666654     367777765333221111234999974  689999999999999998865

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-22  Score=202.68  Aligned_cols=333  Identities=14%  Similarity=0.123  Sum_probs=212.6

Q ss_pred             EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCccc----ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567          111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP-RGFYG----TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF  183 (483)
Q Consensus       111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~-~~~~g----~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~  183 (483)
                      |+|-++.   +. .+|.+.+|+.+.+++.... +.| +..+.    ..+...++++.+|+++|.+  +.++.+++++++.
T Consensus         5 YlD~aa~---~p-~~~~v~ea~~~~~~~~~~~-~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~   79 (391)
T d1p3wa_           5 YLDYSAT---TP-VDPRVAEKMMQFMTMDGTF-GNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN   79 (391)
T ss_dssp             ECBTTTC---CC-CCHHHHHHHHTTTSTTSCC-CCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred             EeeCccc---cC-CCHHHHHHHHHHHHhcccc-CCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence            5665553   33 6789999988877653210 111 11111    1244567889999999976  4555677778877


Q ss_pred             hhhhhh----ccCCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          184 SAIPCF----CKKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       184 ~ai~~~----~~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      .++.++    .++||.|++.+..|.++....   ...|.++..++.+     |++++++.+   .+       ++++|++
T Consensus        80 ~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i---~~-------~T~lv~i  149 (391)
T d1p3wa_          80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM---RD-------DTILVSI  149 (391)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHC---CT-------TEEEEEC
T ss_pred             HHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhC---CC-------CcEEEEE
Confidence            777654    478999999999998876544   3458889888765     355555444   33       3889999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHH
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSAR  330 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~  330 (483)
                      +.+.+++|.+.|+++|.++|++||+++++|++|+.|...         .++...++|+++.|.+|++|+.| |++..+++
T Consensus       150 s~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~---------~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~  220 (391)
T d1p3wa_         150 MHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIGALYVRRK  220 (391)
T ss_dssp             CSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESTTTTSCSSCEEEEECBT
T ss_pred             ECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCcc---------ccchhccccccccccccccCCCceEEEEEecc
Confidence            999999999999999999999999999999999977542         34444566999999999998766 77766665


Q ss_pred             HHHHHHhcCCcee-----ecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecC--C-CCCEE
Q 011567          331 VVDHQRLSSSGYV-----FSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASN--P-ESPIV  401 (483)
Q Consensus       331 ~~~~~~~~~~~~~-----fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~-~~~i~  401 (483)
                      ..........++.     .....+.....+...+++... ...+..+++++...++.++|.++.+..+...  . ...++
T Consensus       221 ~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  300 (391)
T d1p3wa_         221 PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNIL  300 (391)
T ss_dssp             TBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEE
T ss_pred             hhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEE
Confidence            4433322211111     111222222222222333222 2234567788888899999988766554322  1 23455


Q ss_pred             EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc--------------CCCCCceEEEccCCCCHHHHHHH
Q 011567          402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--------------CRLPVGIRLFVSAAHSEADLVKA  467 (483)
Q Consensus       402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--------------~~~~~~lRi~~~~~~t~edi~~~  467 (483)
                      .+.+....     .    ..+... +  .++.++.+..+....              ...++.||++++..+|++|||++
T Consensus       301 ~~~~~~~~-----~----~~~~~~-l--~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l  368 (391)
T d1p3wa_         301 NVSFNYVE-----G----ESLIMA-L--KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYT  368 (391)
T ss_dssp             EEEETTSC-----H----HHHHHH-T--TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHH
T ss_pred             EEEeCCCC-----h----HHHHHH-h--CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHH
Confidence            55554321     1    123332 3  356654332111000              00012499999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011567          468 CESLKRISAVVL  479 (483)
Q Consensus       468 ~~~l~~~~~~~~  479 (483)
                      +++|+++++++-
T Consensus       369 ~~~l~~~l~~lr  380 (391)
T d1p3wa_         369 IELVRKSIGRLR  380 (391)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.91  E-value=1.9e-22  Score=202.31  Aligned_cols=338  Identities=16%  Similarity=0.169  Sum_probs=229.3

Q ss_pred             CCee--EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC--hHHHHHHHHHHHhhhCCC--CEEEe-cccH
Q 011567          107 SGKE--VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT--IDVHLDCEARIAKFLGTP--DSILY-SYGL  179 (483)
Q Consensus       107 ~G~~--~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~--~~~~~~l~~~La~~~g~e--~~i~~-~sG~  179 (483)
                      ++++  |+|-++.   |. .++.+.+++.+.++++-.+........|.  .+..++.++.+++++|.+  +.+++ ++++
T Consensus        19 ~~~~~iYld~a~~---~~-~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt   94 (408)
T d1t3ia_          19 NGHPLVYLDNAAT---SQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT   94 (408)
T ss_dssp             TTEECEECBTTTC---CC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred             CCCCeEEeeCccc---cC-CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchH
Confidence            4553  6666654   33 56788999999888742111111111221  246677889999999963  44544 5556


Q ss_pred             HHHHhhhhh----hccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCcc
Q 011567          180 STMFSAIPC----FCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       180 ~a~~~ai~~----~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +++..++..    -.++|+.|++....|.+.....    ...|.++..++.+     |.+.+++.   ..+       ++
T Consensus        95 ~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~---~~~-------~t  164 (408)
T d1t3ia_          95 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTL---LSE-------KT  164 (408)
T ss_dssp             HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHH---CCT-------TE
T ss_pred             HHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhc---cCC-------Cc
Confidence            676655543    3468999998888888765544    3457788777644     34444443   333       48


Q ss_pred             EEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-cee
Q 011567          247 RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFC  325 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i  325 (483)
                      ++|++..+.+.+|.+.|+++|.++|+++|+++++|.+|+.|.+.         .++...++|++++|.+|++|+.| |++
T Consensus       165 ~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~---------id~~~~~~D~~~~s~hK~~gp~G~g~l  235 (408)
T d1t3ia_         165 KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP---------LDVQLIDCDWLVASGHKMCAPTGIGFL  235 (408)
T ss_dssp             EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCTTCEEE
T ss_pred             eEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccc---------ccccccCCceEEeccccccCCCCcccc
Confidence            99999999999999999999999999999999999999987542         23322356999999999998776 888


Q ss_pred             eccHHHHHHHHhcCCc------------------eee-cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhh
Q 011567          326 TGSARVVDHQRLSSSG------------------YVF-SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGL  384 (483)
Q Consensus       326 ~~~~~~~~~~~~~~~~------------------~~f-s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L  384 (483)
                      ..+++..........+                  ..| .++.+....+++.++++++.+.  +++.++..++.+++.+.+
T Consensus       236 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~  315 (408)
T d1t3ia_         236 YGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGL  315 (408)
T ss_dssp             EECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhh
Confidence            8888876654322111                  012 2344666666677788877642  456777888899999999


Q ss_pred             ccCCCceeecC-----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEcc
Q 011567          385 SDIHGLSIASN-----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVS  456 (483)
Q Consensus       385 ~~~~~~~i~~~-----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~  456 (483)
                      .+.++..+.++     ..++++.+.+....         ..+++. .|.++||.++.+..+.-+   ....++.|||+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~---------~~~v~~-~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~  385 (408)
T d1t3ia_         316 GQIPQLRLYGPNPKHGDRAALASFNVAGLH---------ASDVAT-MVDQDGIAIRSGHHCTQPLHRLFDASGSARASLY  385 (408)
T ss_dssp             HTCTTEEEESCCGGGSCBCSEEEEEETTBC---------HHHHHH-HHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECC
T ss_pred             ccCccccccCCCccccCcceEEEEEeCCCC---------HHHHHH-HHhhCCcEEecCcccccHHHHhhcCCccEEEECC
Confidence            88877776542     23678888774321         224555 467789988754332100   0112345999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 011567          457 AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       457 ~~~t~edi~~~~~~l~~~~~~  477 (483)
                      ..+|++|||+++++|+++++.
T Consensus       386 ~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         386 FYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998874

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-22  Score=203.26  Aligned_cols=352  Identities=14%  Similarity=0.178  Sum_probs=230.7

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-----CEEEecccHHH
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-----DSILYSYGLST  181 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-----~~i~~~sG~~a  181 (483)
                      .++++|||+.+++ .+..++.+++++.++++.. ....+.....|..++.+.+++.+.+.+|.+     +.++.++++++
T Consensus        23 ~~~dvI~l~~G~p-~~~~p~~v~~a~~~al~~~-~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a  100 (418)
T d1w7la_          23 SEHDVVNLGQGFP-DFPPPDFAVEAFQHAVSGD-FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  100 (418)
T ss_dssp             HTSCCEECCCCSC-SSCCCHHHHHHHHHHTSSC-GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCCCCEECCCCCC-CCCCCHHHHHHHHHHHhCC-CcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence            3567899999865 4545678889988887641 110011113344555555555555556643     24455556699


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------------CHHHHHHHHHHhhhhhhhccCcc
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------------DMDSLRNTLERVTADNKRAKKLR  246 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------------d~~~Le~~l~~~~~~~~~~~~~~  246 (483)
                      +..++.+++.+||.|++..+++..+...+...+.+++.++..               +++ .++.......       .+
T Consensus       101 l~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~-------~~  172 (418)
T d1w7la_         101 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD-PMELAGKFTS-------RT  172 (418)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC-HHHHHHHCCT-------TE
T ss_pred             HHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccc-hhhhhccccc-------cc
Confidence            999999999999999999999988888888888887665432               011 2222222222       36


Q ss_pred             EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC
Q 011567          247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      +++++...+|++|.+.+   +++|+++|++|++++|.||+|....++..-. .+....+.  .+..+++.|+||.++.+|
T Consensus       173 ~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~pG  250 (418)
T d1w7la_         173 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM--WERTLTIGSAGKTFSATG  250 (418)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT--GGGEEEEEEHHHHTTCGG
T ss_pred             cceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc--ccccceecccCccccCCC
Confidence            78888888999999987   7899999999999999999998765543111 11121121  234688899999998666


Q ss_pred             ---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cC-----cHHHHHHHHHHHHHHHhhccCCCce
Q 011567          323 ---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---EN-----PDLITKLKKNTAILRTGLSDIHGLS  391 (483)
Q Consensus       323 ---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~-----~~~~~~l~~~~~~l~~~L~~~~~~~  391 (483)
                         ||+++++++++.++.......++  .+.....++.+++....   +.     ....+.++++++.+.+.|++. |++
T Consensus       251 ~RvG~~v~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  327 (418)
T d1w7la_         251 WKVGWVLGPDHIMKHLRTVHQNSVFH--CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK  327 (418)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHTTTSC--CCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             Ccccccccchhhhhhhcccccccccc--ccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCc
Confidence               99999999887765432222222  24444444444443322   11     245777888888899999886 888


Q ss_pred             eecCCCCCEEEEEecCC-----CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc--cCCCCCceEEEccCCCCHHHH
Q 011567          392 IASNPESPIVFLILEKS-----TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD--KCRLPVGIRLFVSAAHSEADL  464 (483)
Q Consensus       392 i~~~~~~~i~~l~l~~~-----~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~--~~~~~~~lRi~~~~~~t~edi  464 (483)
                      +..+.++.++++.+++.     ......+.....+++.++|+++||.+.|+......  .....+.|||++.  .+++++
T Consensus       328 ~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~--~~~~~l  405 (418)
T d1w7la_         328 PLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATL  405 (418)
T ss_dssp             EEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHH
T ss_pred             ccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEc--CCHHHH
Confidence            87666788899887421     00000111223467888888889999987643211  1111234999874  589999


Q ss_pred             HHHHHHHHHHH
Q 011567          465 VKACESLKRIS  475 (483)
Q Consensus       465 ~~~~~~l~~~~  475 (483)
                      ++++++|++..
T Consensus       406 ~~a~~rl~~~~  416 (418)
T d1w7la_         406 QAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.7e-22  Score=198.57  Aligned_cols=339  Identities=15%  Similarity=0.175  Sum_probs=226.3

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CC-EEEecccHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PD-SILYSYGLSTM  182 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~-~i~~~sG~~a~  182 (483)
                      ++.+||++.+++ .+..++.+++++.+.+++...+++.   ..|..++.+.+++.+.+.+|.    ++ .++.+++.+++
T Consensus        25 ~~~~i~l~~G~P-d~~~p~~i~~a~~~~~~~~~~~Y~~---~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al  100 (382)
T d1u08a_          25 QHQAINLSQGFP-DFDGPRYLQERLAHHVAQGANQYAP---MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  100 (382)
T ss_dssp             HTTCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             cCCCEEccCCCC-CCCCCHHHHHHHHHHHhcCCCCCCC---CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHH
Confidence            457899999866 5656788899999998863222211   345555555555555555562    33 45556667899


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ  256 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~  256 (483)
                      ..++.+++++||.|+++.+++......+...+..+......      |++++++...   .       +++++++.+.++
T Consensus       101 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~---~-------~~~~i~l~~P~N  170 (382)
T d1u08a_         101 YAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS---E-------RTRLVILNTPHN  170 (382)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC---T-------TEEEEEEESSCT
T ss_pred             HHHHhhcccccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhc---c-------CccEEEECCCCc
Confidence            99999999999999999999988888888888766554432      4555544322   2       356777777788


Q ss_pred             CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      ++|.+.+   +++|.++|++++++++.||.+..........-........ .+..|++.|++|.++.+|   ||++++++
T Consensus       171 PtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~pG~RiG~~v~~~~  249 (382)
T d1u08a_         171 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL-RERAVAVSSFGKTYHMTGWKVGYCVAPAP  249 (382)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH-HTTEEEEEEHHHHTTCGGGCCEEEECCHH
T ss_pred             ccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccc-cCcEEEEeeccccccCCcccchhhhccch
Confidence            9999988   6888888999999999999987654432111110000000 122578899999998666   99999999


Q ss_pred             HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567          331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST  409 (483)
Q Consensus       331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~  409 (483)
                      +++.+........+  +.+.....++..+++.-++ ..+.++.++++.+.+.+.+... |+.+..+..+.++++.++...
T Consensus       250 ~~~~~~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~  326 (382)
T d1u08a_         250 ISAEIRKVHQYLTF--SVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS  326 (382)
T ss_dssp             HHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC
T ss_pred             hHHHHHhhhccccc--ccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCCC
Confidence            88876543222122  2344444445555543221 1346777888888888888764 888877767888888886432


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ..   +   ..+++.+++++.||.+.|+.....+.. ....+||++.  .++|++++++++|++
T Consensus       327 ~~---d---~~e~~~~ll~e~gV~v~PG~~F~~~~~-~~~~~Ris~~--~~~e~l~~al~RL~~  381 (382)
T d1u08a_         327 TL---D---DVEFCQWLTQEHGVAAIPLSVFCADPF-PHKLIRLCFA--KKESTLLAAAERLRQ  381 (382)
T ss_dssp             CS---C---HHHHHHHHHHHSCEECEEGGGGCSSCC-CSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             CC---C---HHHHHHHHHHHCCEEEEcchhhCCCCC-CCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence            11   1   235677788888999999865432211 1234999985  478999999998875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.3e-23  Score=212.89  Aligned_cols=320  Identities=16%  Similarity=0.111  Sum_probs=202.3

Q ss_pred             cccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCC---------cEEEEcCCchhHHHhHhhhcCCeEEE
Q 011567          149 FYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKG---------DLIVADEGVHWGIQNGLYLSRSTVVY  219 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~g---------diI~~~~~~h~s~~~g~~~s~~~v~~  219 (483)
                      .||..+...+||+++++++|.+.+++++||++|+..+++++++++         +.+.....+|.........+|..+..
T Consensus        69 ~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~  148 (467)
T d2v1pa1          69 AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRN  148 (467)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEE
T ss_pred             hhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeee
Confidence            366677789999999999999999999999999999998876544         45666777788888888888888765


Q ss_pred             ec---------------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC-CccC---hHHHHHHHHHcCcEEEE
Q 011567          220 FK---------------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG-QIAP---LDELIRLKEKYRFRVFL  280 (483)
Q Consensus       220 ~~---------------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G-~i~~---L~~l~~l~~k~~~~li~  280 (483)
                      +.               ..|+++||+.+++....      .+++|++|++++..| ...|   |++|+++|++||++||+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~------~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~  222 (467)
T d2v1pa1         149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN------NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM  222 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG------GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccccccCCCHHHHHHHHhhcCcc------ccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEE
Confidence            43               23789999999776543      478899999987754 4444   89999999999999999


Q ss_pred             eCccccccccCCCCccccccCCCC--------CceeEEEcccccccc-CCCceeeccHHHHH-HH---Hh---cCCceee
Q 011567          281 DESNSFGVLGRSGRGLTEHCGVPV--------DKIDIVTAAMGHALA-TEGGFCTGSARVVD-HQ---RL---SSSGYVF  344 (483)
Q Consensus       281 DEa~s~g~lg~~G~g~~~~~~v~~--------~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~-~~---~~---~~~~~~f  344 (483)
                      |+++.+|.....+.+...+.+..+        ..+|++++|.+|.++ +.||+++.+++... ..   +.   ...+...
T Consensus       223 D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (467)
T d2v1pa1         223 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPT  302 (467)
T ss_dssp             ECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCC
T ss_pred             echhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcc
Confidence            999976542211111222222211        235899899999997 45677766554322 21   11   1111111


Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHH
Q 011567          345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIAD  424 (483)
Q Consensus       345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~  424 (483)
                      ....+...+++....+... ...+..++..++.++|.++|.+. +..+.+. ......+.....................
T Consensus       303 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (467)
T d2v1pa1         303 YGGLEGGAMERLAVGLYDG-MNLDWLAYRIAQVQYLVDGLEEI-GVVCQQA-GGHAAFVDAGKLLPHIPADQFPAQALAC  379 (467)
T ss_dssp             CCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHT-TCCEEEE-CSSCEEEEHHHHSTTSCGGGCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHHHHHHHhc-CCcccCC-CccceeecchhhcCCcchhhhhhHHHHH
Confidence            2223333333333333333 33567888889999999999886 5555432 3333333211000000011111233444


Q ss_pred             HHHHhCCEEEEeeccccc------c--cCCCCCceEEEcc-CCCCHHHHHHHHHHHHHHHHH
Q 011567          425 WALKEDGVFVVTSKRSML------D--KCRLPVGIRLFVS-AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       425 ~~l~~~Gv~v~~~~~~~~------~--~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .++.+.||.......+..      .  ....+..+|++++ ..+|+||||+++++|+++.++
T Consensus       380 ~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455666886543321110      0  0011235999875 567999999999999999864

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.89  E-value=5.4e-22  Score=201.04  Aligned_cols=319  Identities=14%  Similarity=0.111  Sum_probs=203.2

Q ss_pred             cccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEE---------
Q 011567          149 FYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY---------  219 (483)
Q Consensus       149 ~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~---------  219 (483)
                      .||-.+...+||+.+++++|.+.+++++||++|+..++++++++||.|+.+..++.+. ..+...|...+.         
T Consensus        70 ~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~~~-~~i~~~g~~~~~~~~~~~~~~  148 (456)
T d1c7ga_          70 AYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTR-FHQEKNGATFVDIVRDEAHDA  148 (456)
T ss_dssp             CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHHHH-HHHHHTTEEEEECBCGGGGCT
T ss_pred             hccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchHHHH-HHHHHcCceeeeccccccccc
Confidence            4666778899999999999999999999999999999999999999999887655433 234444443322         


Q ss_pred             -----ec-CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-CCccC---hHHHHHHHHHcCcEEEEeCccccccc
Q 011567          220 -----FK-HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIAP---LDELIRLKEKYRFRVFLDESNSFGVL  289 (483)
Q Consensus       220 -----~~-~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~l  289 (483)
                           +. ..|++.|++.+++....      .+++++++...+.. |...|   +++|.++|++||+.+++|+++.+|..
T Consensus       149 ~~~~~~~~~~d~~~le~~I~~~~~~------~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a  222 (456)
T d1c7ga_         149 SLNLPFKGDIDLNKLATLIKEKGAE------NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENA  222 (456)
T ss_dssp             TCCCSCTTCBCHHHHHHHHHHHCGG------GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred             cccCCccccCCHHHHHHHhhhcCCc------cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcch
Confidence                 11 23899999999876543      47788888877764 45545   78889999999999999999875431


Q ss_pred             cCCCCccccccCCCC--------CceeEEEcccccccc-CCCceeecc-HHHHHHHHhcC---CceeecCCCcHHHHHHH
Q 011567          290 GRSGRGLTEHCGVPV--------DKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSS---SGYVFSASLPPYLASAA  356 (483)
Q Consensus       290 g~~G~g~~~~~~v~~--------~~~Di~~~s~~K~lg-~~GG~i~~~-~~~~~~~~~~~---~~~~fs~~~~p~~~aaa  356 (483)
                      ...+.....+.+...        ...|++++|++|.++ ..||+++.+ +++.+..+...   .++...+.++...+.++
T Consensus       223 ~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~  302 (456)
T d1c7ga_         223 YFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAM  302 (456)
T ss_dssp             HHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHH
T ss_pred             hhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHH
Confidence            100000001111111        234899999999997 457777654 55655544221   11111122333333333


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe
Q 011567          357 ITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT  436 (483)
Q Consensus       357 ~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~  436 (483)
                      ...+....+ .+..++..++.++|.++|.+. |+++..+.+.+.+++...........+....+.+...++.+.||....
T Consensus       303 a~~l~e~~~-~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~  380 (456)
T d1c7ga_         303 AIGLREAMQ-YEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSME  380 (456)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEE
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecc
Confidence            333443333 345666677889999999986 888877777777777532111000111112344555555566887654


Q ss_pred             eccccccc------CC--CCCceEEEcc-CCCCHHHHHHHHHHHHHHHH
Q 011567          437 SKRSMLDK------CR--LPVGIRLFVS-AAHSEADLVKACESLKRISA  476 (483)
Q Consensus       437 ~~~~~~~~------~~--~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~  476 (483)
                      ...+....      ..  ....+|++++ ..+|++|||+++++|+++.+
T Consensus       381 ~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~  429 (456)
T d1c7ga_         381 RGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ  429 (456)
T ss_dssp             ESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred             cCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence            43221111      11  1224999987 45699999999999998864

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=4.3e-21  Score=190.16  Aligned_cols=312  Identities=18%  Similarity=0.206  Sum_probs=210.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      ++-++++.+.+++ |.        +.+.+...++|+++|+++|.+.+++++||++|+..++.++ .++||.|+++...|.
T Consensus        12 ~~~~~~~~~~~~~-~~--------~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~   82 (376)
T d1mdoa_          12 AEELAAVKTVLDS-GW--------ITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWV   82 (376)
T ss_dssp             HHHHHHHHHHHHH-TC--------CSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCH
T ss_pred             HHHHHHHHHHHhc-CC--------CcCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccc
Confidence            5566788888886 32        1223667899999999999999999999999999999998 799999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++..++...|.+++.++.+      |+++|++.+.+          .+++|++.+++   |..+|+++|.++|++||+.+
T Consensus        83 ~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~----------~tkaIi~~h~~---G~~~~~~~i~~i~~~~~i~v  149 (376)
T d1mdoa_          83 STLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP----------QTKAIIPVHYA---GAPADLDAIYALGERYGIPV  149 (376)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----------TEEEECCBCGG---GCCCCHHHHHHHHHHHTCCB
T ss_pred             ccccchhccccceeeecccccccCCCHHHHHHhcCC----------CCeEEEEeCCC---CCccchhHHHHHHHhcCceE
Confidence            9999999999999887654      67777776643          26777776655   88889999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HHHHHHHHhc-CCc--------------
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLS-SSG--------------  341 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~~~~~~~~~-~~~--------------  341 (483)
                      |+|++|++|..-. +.    ..|-  .+..+..+..+|.++ +.||+++.+ +++.+.++.. ..+              
T Consensus       150 IeD~a~a~g~~~~-~~----~~g~--~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~  222 (376)
T d1mdoa_         150 IEDAAHATGTSYK-GR----HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRA  222 (376)
T ss_dssp             CEECTTCTTCEET-TE----ETTS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC----------
T ss_pred             EeccchhccCeeC-Ce----eccc--ccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCccccccccccccc
Confidence            9999999875321 11    1111  112333344479886 446776554 4454443221 111              


Q ss_pred             --e-----eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC-----CCEEEEEecCCC
Q 011567          342 --Y-----VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-----SPIVFLILEKST  409 (483)
Q Consensus       342 --~-----~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-----~~i~~l~l~~~~  409 (483)
                        |     .+...++.+.++.+...|+.++   +..++.+++.+++.+.|+++++..+.....     ...+.+.+... 
T Consensus       223 ~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~---~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  298 (376)
T d1mdoa_         223 PQAEVLAPGYKYNLPDLNAAIALAQLQKLD---ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEA-  298 (376)
T ss_dssp             -CCEESSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHH-
T ss_pred             ccccchhcccccccchhhhhhhhhhhhhhh---HHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccc-
Confidence              1     1223367888888877776664   467888889999999998875544332211     11222332110 


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCEEEEeeccccc---------ccCCCC-------CceEEEccCCCCHHHHHHHHHHHHH
Q 011567          410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---------DKCRLP-------VGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---------~~~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                          .....-.++.+. |+++||.++....+..         .....|       ..|.+.++..+|++|+++++++|++
T Consensus       299 ----~~~~~Rd~l~~~-L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~  373 (376)
T d1mdoa_         299 ----RCGITRDALMAS-LKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ  373 (376)
T ss_dssp             ----HHSSCHHHHHHH-HHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ----cchhhHHHHHHH-HHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence                000001245664 5667998764322210         011111       1288888888999999999999998


Q ss_pred             HH
Q 011567          474 IS  475 (483)
Q Consensus       474 ~~  475 (483)
                      ++
T Consensus       374 i~  375 (376)
T d1mdoa_         374 IA  375 (376)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.1e-21  Score=184.62  Aligned_cols=339  Identities=17%  Similarity=0.217  Sum_probs=236.0

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccCh--HHHHHHH-HHHHhhhCCCCEEE-ecccHHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--DVHLDCE-ARIAKFLGTPDSIL-YSYGLSTM  182 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~~~~~l~-~~La~~~g~e~~i~-~~sG~~a~  182 (483)
                      ++.|++..+ |+    ..|.+.++....+ .+|.-|..|.|.+.|+.  |..+.+. ++..++||.+.+-+ ..||+.||
T Consensus        26 ~~~i~LiaSEN~----~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN  101 (416)
T d1dfoa_          26 EEHIELIASENY----TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN  101 (416)
T ss_dssp             HHSEECCTTCCC----CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred             HcCceEecCccc----CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHH
Confidence            457888765 66    5688988888777 46888888888666653  3334443 55566899887655 59999999


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhh---hcC--CeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLY---LSR--STVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVE  252 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~---~s~--~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e  252 (483)
                      .+++.++++|||.|+.....|+.....-.   .++  .+.+.++.     -|++.++++.++..         .++|++.
T Consensus       102 ~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~k---------PklIi~G  172 (416)
T d1dfoa_         102 FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHK---------PKMIIGG  172 (416)
T ss_dssp             HHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHC---------CSEEEEE
T ss_pred             HHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhc---------cceEEec
Confidence            99999999999999988877766443221   111  23444432     28889988887765         3466664


Q ss_pred             cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeecc---
Q 011567          253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGS---  328 (483)
Q Consensus       253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~---  328 (483)
                        ++......|+++++++|++.|.+|++|.+|..|.+..   |..  .+ +-...|++++|.+|+| |+.||+++.+   
T Consensus       173 --~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~---g~~--~s-P~~~aDvvt~tThKtlrGPrggiI~~~~~~  244 (416)
T d1dfoa_         173 --FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAA---GVY--PN-PVPHAHVVTTTTHKTLAGPRGGLILAKGGS  244 (416)
T ss_dssp             --CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH---TSS--CC-CTTTSSEEEEESSSTTCCCSCEEEEESSCC
T ss_pred             --ccccccccCHHHHHHHHHhcCceEEcchhhhhcceec---ccc--CC-cccccceeeeehhhcccCCCceEEEeccch
Confidence              3444677789999999999999999999998776541   221  11 1234599999999999 5789999875   


Q ss_pred             HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEec
Q 011567          329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILE  406 (483)
Q Consensus       329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~l~  406 (483)
                      +++.+.+.....+...++..+...++.|.+-.+.+. +..+..+++.+|++.|.+.|.+. |+++.+ ..++.++.+.+.
T Consensus       245 ~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~  323 (416)
T d1dfoa_         245 EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLV  323 (416)
T ss_dssp             HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred             HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEec
Confidence            566666655545555555544555444443333333 22568899999999999999986 999874 357888888875


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC-CCCCceEEEcc----CCCCHHHHHHHHHHHHHHHHH
Q 011567          407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC-RLPVGIRLFVS----AAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~-~~~~~lRi~~~----~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +..        ...+.+...|++.||.+.....|..++. ..+.||||..+    ....++|++++.+.|.++++.
T Consensus       324 ~~~--------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         324 DKN--------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             GGT--------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccC--------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            321        1113355568888999876654433222 23678999654    357899999999999888753

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.88  E-value=2.9e-21  Score=197.02  Aligned_cols=352  Identities=13%  Similarity=0.079  Sum_probs=208.5

Q ss_pred             CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567          107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI  186 (483)
Q Consensus       107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai  186 (483)
                      .|+.+|||.|...-+...     ++....+.. |.      ..|+..+...+|++++++++|.+.+++++||++|+..++
T Consensus        40 ~~~~~id~~sd~~t~~~~-----~~~~a~~~~-gd------~~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~  107 (465)
T d1ax4a_          40 SSAVYIDLLTDSGTNAMS-----DHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILF  107 (465)
T ss_dssp             GGGCSEECSCSSSCCCEE-----HHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred             ccCeeeecccccchhhhh-----HHHHHHHhh-hh------hhhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHH
Confidence            467789998864433211     122222332 11      135556777899999999999999999999999999999


Q ss_pred             hhhccCCc-------EEEEcCCchhHHHhHhhhcCCeEEEec---------------CCCHHHHHHHHHHhhhhhhhccC
Q 011567          187 PCFCKKGD-------LIVADEGVHWGIQNGLYLSRSTVVYFK---------------HNDMDSLRNTLERVTADNKRAKK  244 (483)
Q Consensus       187 ~~~~~~gd-------iI~~~~~~h~s~~~g~~~s~~~v~~~~---------------~~d~~~Le~~l~~~~~~~~~~~~  244 (483)
                      ++++++++       .++.....|.++.......|...+...               ..|+++|++.+++..++      
T Consensus       108 ~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~------  181 (465)
T d1ax4a_         108 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD------  181 (465)
T ss_dssp             HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG------
T ss_pred             HHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc------
Confidence            88764332       233444444455555566666554331               12889999999876544      


Q ss_pred             ccEEEEEecccCCCCCc-cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--------CceeEEEc
Q 011567          245 LRRYIVVEAVYQNSGQI-AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--------DKIDIVTA  312 (483)
Q Consensus       245 ~~~~iv~e~v~~~~G~i-~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--------~~~Di~~~  312 (483)
                      ..++++++++++.+|.. .|   |++|+++|++||++||+||++..|..+........+++...        .-.|++++
T Consensus       182 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~  261 (465)
T d1ax4a_         182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTM  261 (465)
T ss_dssp             GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEE
T ss_pred             cccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEe
Confidence            47788888887765543 33   79999999999999999999976542110000001111100        12378888


Q ss_pred             cccccccCC-CceeeccHH--HHHHHHhc-CCceeecC--CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567          313 AMGHALATE-GGFCTGSAR--VVDHQRLS-SSGYVFSA--SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       313 s~~K~lg~~-GG~i~~~~~--~~~~~~~~-~~~~~fs~--~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                      |.+|+++.. ||+++.++.  ..+..+.. .....+..  .......+++...+... ..++..++..++.++|.+.|++
T Consensus       262 s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~-~~~~~~~~~~~~~~~l~~~L~~  340 (465)
T d1ax4a_         262 SAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-TEEEYLHYRIGQVKYLGDRLRE  340 (465)
T ss_dssp             ETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            899988744 567766543  22221111 01111111  12222222222222222 2245677777889999999998


Q ss_pred             CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc--------CCCCCceEEEcc-C
Q 011567          387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--------CRLPVGIRLFVS-A  457 (483)
Q Consensus       387 ~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--------~~~~~~lRi~~~-~  457 (483)
                      . ++++..+.....+.+.....................+++.+.||.......+....        ....+.+|++++ .
T Consensus       341 ~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~  419 (465)
T d1ax4a_         341 A-GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR  419 (465)
T ss_dssp             T-TCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred             h-cCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCC
Confidence            6 77777666666666654321111111111223334445666688776544322111        011235999754 6


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRISAVV  478 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~~  478 (483)
                      .+|+||+|+++++|++++++.
T Consensus       420 ~~T~eeiD~vv~~l~~v~~~~  440 (465)
T d1ax4a_         420 VYTNDHMDYIADALIGLKEKF  440 (465)
T ss_dssp             SSCHHHHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            779999999999999988764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.3e-20  Score=183.71  Aligned_cols=308  Identities=14%  Similarity=0.100  Sum_probs=209.2

Q ss_pred             CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccH-H
Q 011567          107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGL-S  180 (483)
Q Consensus       107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~-~  180 (483)
                      .++++++++.+ |.++.  ++.+.+++.+.+.....+.      |. ..-..+|++.+|++++.    ++.|++++|+ +
T Consensus        17 ~~~d~~~l~~~enp~~~--p~~i~~~~~~~~~~~~~~~------yp-~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~   87 (334)
T d2f8ja1          17 EKRDKTYLALNENPFPF--PEDLVDEVFRRLNSDALRI------YY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADE   87 (334)
T ss_dssp             CCCCSEECSSCCCSSCC--CHHHHHHHHHHCCTTGGGS------CC-CSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHH
T ss_pred             cCCCceEEECCCCCCCC--CHHHHHHHHHHhhcchhcC------CC-CCCcHHHHHHHHHHhcccCCCcceEEecCcchh
Confidence            47788999887 77765  4888998888876522211      11 11235788999998863    3445555554 5


Q ss_pred             HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567          181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ  260 (483)
Q Consensus       181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~  260 (483)
                      ++..+++    .+|.|++..+++..+...++..|.+++.++.++-....    +.      ....++++++...+|++|.
T Consensus        88 ~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~----~~------~~~~~~~l~l~nP~NPtG~  153 (334)
T d2f8ja1          88 IIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP----EV------NVGEGDVVFIPNPNNPTGH  153 (334)
T ss_dssp             HHHHHHH----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC----CC------CCCTTEEEEEESSCTTTCC
T ss_pred             HHHHHhh----hccccccccccccccccchhccCCcccccccccccccc----cc------ccccceEEEecccccccce
Confidence            6665544    45888889999999999999999999998764210000    00      1113567777777899999


Q ss_pred             ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHh
Q 011567          261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRL  337 (483)
Q Consensus       261 i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~  337 (483)
                      +.+.++|.+++ ++++++|+||++......    ........  .+..+++.|+||+++..|   ||+++++++++.++.
T Consensus       154 ~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~----~~~~~~~~--~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~  226 (334)
T d2f8ja1         154 VFEREEIERIL-KTGAFVALDEAYYEFHGE----SYVDFLKK--YENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNR  226 (334)
T ss_dssp             CCCHHHHHHHH-TTTCEEEEECTTGGGTCC----CCGGGGGT--CSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHH
T ss_pred             eecHHHhhccc-cceeEEeecccchhhccc----cccccccc--CceEEEEecCccccchhhhhhhhcccchHHHHHHHH
Confidence            99988887765 578999999998543221    11111111  233688899999998666   999999999988866


Q ss_pred             cCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHH
Q 011567          338 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQ  417 (483)
Q Consensus       338 ~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~  417 (483)
                      ....+    ..+.....++.+.++..+...+.++.++++.+.+.+.|+++ |+++.. ++++++++.++.         .
T Consensus       227 ~~~~~----~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~-~~g~f~~~~~~~---------~  291 (334)
T d2f8ja1         227 VRLPF----NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRITD-SRGNFVFVFMEK---------E  291 (334)
T ss_dssp             HSCTT----CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC-CCSSEEEEECCH---------H
T ss_pred             hhccc----ccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC-CCeECC-CCceEEEEECCC---------C
Confidence            54322    23455555555566544333456788888999999999987 888874 467777777631         2


Q ss_pred             HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          418 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       418 ~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ...++.+.+++ +||.+++.          ++.+||++.   |++|+++++++|++
T Consensus       292 ~~~~~~~~L~~-~GI~vr~~----------~~~vRis~g---~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         292 EKERLLEHLRT-KNVAVRSF----------REGVRITIG---KREENDMILRELEV  333 (334)
T ss_dssp             HHHHHHHHHHH-TTEECEEE----------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-CCCEECCC----------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence            34567776554 69998653          245999984   78899999988875

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=5.2e-20  Score=186.88  Aligned_cols=305  Identities=11%  Similarity=0.061  Sum_probs=206.9

Q ss_pred             hHHHHHHHHHHHhhhCCCC-----------EEEecccHHHHHhhhhhhcc-------------------CCcEEEEcCCc
Q 011567          153 IDVHLDCEARIAKFLGTPD-----------SILYSYGLSTMFSAIPCFCK-------------------KGDLIVADEGV  202 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~-----------~i~~~sG~~a~~~ai~~~~~-------------------~gdiI~~~~~~  202 (483)
                      .....++-++|++++|.++           .+++++|++||..++.+...                   +.-+|++++..
T Consensus       112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~  191 (476)
T d1js3a_         112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA  191 (476)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred             HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence            3455666677888888643           46778899999888643211                   12368899999


Q ss_pred             hhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567          203 HWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR  277 (483)
Q Consensus       203 h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~  277 (483)
                      |+|+.+++.+.|..+..++.+     |+++|++.+++...+    .....+|+.....+.+|.+.|+++|.++|++||+|
T Consensus       192 H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~----g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~w  267 (476)
T d1js3a_         192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA----GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIW  267 (476)
T ss_dssp             CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhc----CCCcEEEeecCCCccceeeccHHHHHHHHHhcCcE
Confidence            999999999999888777653     799999999876543    22355666666677889999999999999999999


Q ss_pred             EEEeCcccccccc-CCCCccccccCCCCCceeEEEccccccccCCC--c-eeeccHHHHHHHHhcCCc------------
Q 011567          278 VFLDESNSFGVLG-RSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--G-FCTGSARVVDHQRLSSSG------------  341 (483)
Q Consensus       278 li~DEa~s~g~lg-~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G-~i~~~~~~~~~~~~~~~~------------  341 (483)
                      +++|.+++++..- ...+..  ..|+  ..+|.++.+.||+++.+.  | +++.++......-.....            
T Consensus       268 lHVDAA~Gg~~~~~~~~~~~--~~gi--~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (476)
T d1js3a_         268 LHVDAAYAGSAFICPEFRHL--LNGV--EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI  343 (476)
T ss_dssp             EEEECTTGGGGGGSTTTGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSC
T ss_pred             EEEecccchhhhhhcchhhh--hcCC--cccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccccccccc
Confidence            9999999765432 111211  1234  456899899999997432  3 344443332211000000            


Q ss_pred             -----eeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567          342 -----YVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       342 -----~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~  414 (483)
                           ++...+-+ ..+.....+++.+-  ...+++++..+++++|.+.|++.+++++..++..++++++++..      
T Consensus       344 ~~~~~~~~~~sr~-~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~------  416 (476)
T d1js3a_         344 TDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS------  416 (476)
T ss_dssp             CCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC------
T ss_pred             ccccccccccchh-hHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCC------
Confidence                 11111111 11222334444443  22467888889999999999998999999888999999998542      


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-CCCCHHHHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                       +...+++.+++.+++.+++++.....      ...||+++. ...|++||+.+++.|+++.++++
T Consensus       417 -d~~n~~l~~~l~~~G~~~~s~t~~~g------~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         417 -DGLNEALLERINSARKIHLVPCRLRG------QFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             -HHHHHHHHHHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHhcCCEEEeeeeECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence             23445677776666556666543211      123999875 66789999999999999999876

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.86  E-value=3.5e-21  Score=196.25  Aligned_cols=317  Identities=15%  Similarity=0.085  Sum_probs=190.4

Q ss_pred             ccChHHHHHHHHHHHhhhCCCCEEEecccHH-HHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEe--cCC--
Q 011567          150 YGTIDVHLDCEARIAKFLGTPDSILYSYGLS-TMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYF--KHN--  223 (483)
Q Consensus       150 ~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~-a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~--~~~--  223 (483)
                      ......+.++|+.+|+++|.++++++++|++ +|.+++.+++++||.|++++.+|.|+..+.. +.+......  +.+  
T Consensus        62 ~~~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~  141 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY  141 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred             cCCCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeecccccc
Confidence            3444578999999999999999999988865 5677789999999999999999999987554 444433221  111  


Q ss_pred             ------CHHHH-HHHHHHhhhh-h-h-hccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567          224 ------DMDSL-RNTLERVTAD-N-K-RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSG  293 (483)
Q Consensus       224 ------d~~~L-e~~l~~~~~~-~-~-~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G  293 (483)
                            +.+++ ++.+++.... . + .....++.+++...++..|.+.|+++|+++|++||+++++||+|+.+......
T Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~  221 (462)
T d1c4ka2         142 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  221 (462)
T ss_dssp             CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             cccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCc
Confidence                  11222 2222221111 0 0 01112444555566677899999999999999999999999999876532211


Q ss_pred             -Ccc----ccccCCCCCceeEEEccccccccCC-Cceee-ccHHHHH---------HHHhcCCceeecCCCcHHHHHHHH
Q 011567          294 -RGL----TEHCGVPVDKIDIVTAAMGHALATE-GGFCT-GSARVVD---------HQRLSSSGYVFSASLPPYLASAAI  357 (483)
Q Consensus       294 -~g~----~~~~~v~~~~~Di~~~s~~K~lg~~-GG~i~-~~~~~~~---------~~~~~~~~~~fs~~~~p~~~aaa~  357 (483)
                       ++-    ..+.+.. ..+|+++.|++|++|+. ||.++ .+...+.         ..+. ......+++.+...++...
T Consensus       222 ~~~~~~~~g~~~~~~-~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~sp~~~~~asl~  299 (462)
T d1c4ka2         222 MRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNN-SFNLFMSTSPFYPMYAALD  299 (462)
T ss_dssp             GGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHH-HHHHHSCSSCCHHHHHHHH
T ss_pred             CCcchhhcccccccc-CCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHH-hhhhcccCCchHHHHHHHH
Confidence             111    1122222 46799999999999854 34443 3332221         1111 1111223445555566555


Q ss_pred             HHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC-------------------------------------CC
Q 011567          358 TAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-------------------------------------ES  398 (483)
Q Consensus       358 ~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-------------------------------------~~  398 (483)
                      ++..++..  ..++.++..++.+++++++.++.+.......                                     ..
T Consensus       300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (462)
T d1c4ka2         300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGD  379 (462)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCc
Confidence            66666643  2456778888899999988776432111000                                     00


Q ss_pred             CE-------EEEEecCC---CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHH
Q 011567          399 PI-------VFLILEKS---TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       399 ~i-------~~l~l~~~---~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~  468 (483)
                      ..       +.+..+..   .+...........+.+ .|+++||.+....         ...||++++..+|++|+|+++
T Consensus       380 ~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~-~L~~~gI~~e~~~---------~~~i~~~~s~~~T~edid~li  449 (462)
T d1c4ka2         380 NQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVAN-YLRDHGIIPEKSD---------LNSILFLMTPAETPAKMNNLI  449 (462)
T ss_dssp             TCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHH-HHHHTTCCCSEEC---------SSEEEEECCTTCCHHHHHHHH
T ss_pred             cceecccceeEEecCCccccccchhhcCCcHHHHHH-HHHHcCCeeeccC---------CCeEEEEecCCCCHHHHHHHH
Confidence            00       12221110   0000000000123344 4667788664332         134999999999999999999


Q ss_pred             HHHHHHHHHH
Q 011567          469 ESLKRISAVV  478 (483)
Q Consensus       469 ~~l~~~~~~~  478 (483)
                      ++|+++.+..
T Consensus       450 ~aL~ei~r~~  459 (462)
T d1c4ka2         450 TQLLQLQRLI  459 (462)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-20  Score=183.03  Aligned_cols=297  Identities=13%  Similarity=0.180  Sum_probs=203.2

Q ss_pred             hHHHHHHHHHHHhhhCCCC--EEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH--hhhcCCeEEEecCC----
Q 011567          153 IDVHLDCEARIAKFLGTPD--SILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG--LYLSRSTVVYFKHN----  223 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~--~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g--~~~s~~~v~~~~~~----  223 (483)
                      .++..++++.|++++|.++  .+++ .||++++.+++..+..+++.+++....|++....  ....+..+..+..+    
T Consensus        51 ~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (388)
T d1h0ca_          51 YQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGH  130 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccccccccccccCCccc
Confidence            3578899999999999753  4655 6789999999999999998777777777664322  22233333333322    


Q ss_pred             -CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567          224 -DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV  302 (483)
Q Consensus       224 -d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v  302 (483)
                       |.+.+++.+...         +++++.+..+.+.+|.+.|+++|.++|++||+++++|.+++.|...         .++
T Consensus       131 ~~~~~~~~~~~~~---------~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~---------~d~  192 (388)
T d1h0ca_         131 YTLQEVEEGLAQH---------KPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTP---------LYM  192 (388)
T ss_dssp             CCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSC---------CCT
T ss_pred             cchHHHHHHhccC---------CcceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccccc---------ccc
Confidence             455555544432         2568888888889999999999999999999999999999976542         344


Q ss_pred             CCCceeEEEccccccccCCC--ceeeccHHHHHHHHhcCC---------------------ceeecCCCcHHHHHHHHHH
Q 011567          303 PVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSSS---------------------GYVFSASLPPYLASAAITA  359 (483)
Q Consensus       303 ~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~~---------------------~~~fs~~~~p~~~aaa~~a  359 (483)
                      +..++|++++|.+|++++.+  |++..++...+.......                     ...+.++.+.....+..++
T Consensus       193 ~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a  272 (388)
T d1h0ca_         193 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRES  272 (388)
T ss_dssp             TTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHH
T ss_pred             cccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHH
Confidence            44567999999999997443  566777776665432110                     0122334555566667777


Q ss_pred             HHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceee-cC--CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE
Q 011567          360 IDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIA-SN--PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF  433 (483)
Q Consensus       360 l~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~--~~~-~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~  433 (483)
                      ++.+.+.  +...++..++.+++++.+... ++.+. .+  ..+ .++.+.+++..     +   ..++...+++++||.
T Consensus       273 l~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~-----~---~~~~~~~L~~~~gI~  343 (388)
T d1h0ca_         273 LALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAVPAGY-----D---WRDIVSYVIDHFDIE  343 (388)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEE
T ss_pred             HHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEECCCCC-----C---HHHHHHHHHhcCCEE
Confidence            8777542  456777788888888888775 44332 12  123 36677764311     1   235667666777998


Q ss_pred             EEeecccccccCCCCCceEEE-ccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          434 VVTSKRSMLDKCRLPVGIRLF-VSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       434 v~~~~~~~~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      +..+..+.     ....+||+ +...+|++|||+++++|+++++++-++
T Consensus       344 v~~G~~~~-----~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         344 IMGGLGPS-----TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             CEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             EeCCchhh-----cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            87654321     12359998 677889999999999999999987554

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.2e-20  Score=179.08  Aligned_cols=275  Identities=14%  Similarity=0.139  Sum_probs=187.8

Q ss_pred             HHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhccCCc-EEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHH
Q 011567          157 LDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKGD-LIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSL  228 (483)
Q Consensus       157 ~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~~~gd-iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~L  228 (483)
                      .+|+++||+++|.+  +.++.+++.+++..++++++++|| .|+++.+++..+....+..|.+++.++..     |++++
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l  138 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGI  138 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHH
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhccCceeeccccccccccchhhh
Confidence            58999999999964  455556666899999999999998 68889999999888899999998877643     34444


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      +..+    .       ++++|++.+.++++|.+.+-   ..+.+.+ +++.++++||++.......   ........  .
T Consensus       139 ~~~~----~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~---~~~~~~~~--~  201 (354)
T d1fg7a_         139 SDKL----D-------GVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQA---SLAGWLAE--Y  201 (354)
T ss_dssp             HTSC----T-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGG---CSGGGTTT--C
T ss_pred             hhcc----c-------ccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhcccc---ccchhhcc--c
Confidence            3322    1       36788888899999999884   4444444 4678888888875433221   11111221  3


Q ss_pred             ceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI--DVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al--~~l~~~~~~~~~l~~~~~~l  380 (483)
                      +..+++.||||++|..|   ||+++++++++.+......+.    .+.....++.+++  +.........+++.+..+.+
T Consensus       202 ~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l  277 (354)
T d1fg7a_         202 PHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYP----LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYL  277 (354)
T ss_dssp             TTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSSC----SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEeCCccccCCCccccccccccchhhhhhhhhcCccc----hhhHHHHHHHHHHhhhccccccccchhhhhHHHHH
Confidence            33677899999998666   999999999998876544432    2222333232222  22222234556677788888


Q ss_pred             HHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc-cccccCCCCCceEEEccCCC
Q 011567          381 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR-SMLDKCRLPVGIRLFVSAAH  459 (483)
Q Consensus       381 ~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~-~~~~~~~~~~~lRi~~~~~~  459 (483)
                      .+.|.+++++....+..++++++++++           ..++++.++ ++||++++... +..     +..+||++.   
T Consensus       278 ~~~l~~~~~~~~~~p~~~~f~~~~~~~-----------~~~~~~~L~-~~gIlvr~~~~~~~~-----~~~lRisig---  337 (354)
T d1fg7a_         278 IAALKEIPCVEQVFDSETNYILARFKA-----------SSAVFKSLW-DQGIILRDQNKQPSL-----SGCLRITVG---  337 (354)
T ss_dssp             HHHHHHSTTEEEECCCSSSEEEEEETT-----------HHHHHHHHH-HTTEECEECTTSTTC-----TTEEEEECC---
T ss_pred             HHHHHhCCCcceeCCCCceEEEEeCCC-----------HHHHHHHHH-HCCcEEecCCCCCCC-----CCEEEEEeC---
Confidence            889988866654445678888888742           224666655 46999986543 222     345999974   


Q ss_pred             CHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLK  472 (483)
Q Consensus       460 t~edi~~~~~~l~  472 (483)
                      |++|+++++++|+
T Consensus       338 t~ee~~~~l~aLk  350 (354)
T d1fg7a_         338 TREESQRVIDALR  350 (354)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7899999998886

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.86  E-value=6.7e-20  Score=177.25  Aligned_cols=337  Identities=17%  Similarity=0.222  Sum_probs=234.2

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCCEEEe-cccHHH
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPDSILY-SYGLST  181 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~~i~~-~sG~~a  181 (483)
                      ++.|++..+ |+    ..|.+.++....+ .+|..|.+|.|.+.|+ +...++|    ++..++|+.+.+-+- .||+.|
T Consensus        23 ~~~l~LiaSEN~----~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~-~~id~iE~la~~ra~~lF~a~~anVqp~SGs~A   97 (405)
T d1kl1a_          23 HAKIELIASENF----VSRAVMEAQGSVLTNKYAEGYPGRRYYGGC-EYVDIVEELARERAKQLFGAEHANVQPHSGAQA   97 (405)
T ss_dssp             HHSEECCTTCCC----CCHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHH
T ss_pred             HcCceEeccCCc----CCHHHHHHhcCcccCcCcCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCCcceeeccCchHH
Confidence            357888765 66    5588999888877 5688888888865554 4333333    556678998876554 899999


Q ss_pred             HHhhhhhhccCCcEEEEcCCchhHHH---hHhhhc--CCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567          182 MFSAIPCFCKKGDLIVADEGVHWGIQ---NGLYLS--RSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIV  250 (483)
Q Consensus       182 ~~~ai~~~~~~gdiI~~~~~~h~s~~---~g~~~s--~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv  250 (483)
                      |.++..++.++||.|+.-...++...   .-...+  ....+.++.+      |++.++++.++..         .++|+
T Consensus        98 n~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k---------PklIi  168 (405)
T d1kl1a_          98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR---------PKLIV  168 (405)
T ss_dssp             HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC---------CSEEE
T ss_pred             HHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhC---------cceEE
Confidence            99999999999999987665544322   111111  2344555432      8899999988765         34666


Q ss_pred             EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccH
Q 011567          251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA  329 (483)
Q Consensus       251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~  329 (483)
                      +-.  +..-...|+++++++|++.|++|++|-+|-.|.+..   |..+  + +-+..|++++|.+|+| |+.||+++.++
T Consensus       169 ~G~--S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~---g~~~--~-P~~~aDvvt~tThKtlrGPrgg~I~~~~  240 (405)
T d1kl1a_         169 AAA--SAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHP--N-PVPYAHFVTTTTHKTLRGPRGGMILCQE  240 (405)
T ss_dssp             ECC--SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSC--C-STTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred             ecc--cccccccChHHHHHHHhhhCCEEecchhhHhhhhhh---hhcC--C-hhhhhhheeccccccccCCCCceEEecc
Confidence            643  122444579999999999999999999998776541   2221  1 1134699999999999 68899999999


Q ss_pred             HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecC
Q 011567          330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEK  407 (483)
Q Consensus       330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~  407 (483)
                      ++.+.+.....+...++......++.|.+-.+.+. +..+..+++.+|++.|.+.|.+. |+.+.+. .++.++.+.+.+
T Consensus       241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~  319 (405)
T d1kl1a_         241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP  319 (405)
T ss_dssp             HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred             hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccc
Confidence            98888766655555555444555554444444343 23568889999999999999985 9998753 578888888753


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC-CCCCceEEEcc----CCCCHHHHHHHHHHHHHHHH
Q 011567          408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC-RLPVGIRLFVS----AAHSEADLVKACESLKRISA  476 (483)
Q Consensus       408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~-~~~~~lRi~~~----~~~t~edi~~~~~~l~~~~~  476 (483)
                      ...    ..    ..+.+.|++.||.+.....|.-++. ..+.||||..+    ....++|+.++.+.|.++++
T Consensus       320 ~~~----~g----~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         320 QQL----TG----KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             GTC----CH----HHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             cCC----cH----HHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            221    11    2344567777998886655443221 23578999654    45789999999999988874

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.3e-19  Score=175.61  Aligned_cols=331  Identities=15%  Similarity=0.165  Sum_probs=206.1

Q ss_pred             eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567          110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA  185 (483)
Q Consensus       110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a  185 (483)
                      -|+|-++.   +. .++.+.|++.+.+++. .+........+  ..+...+.++++++++|++  +.++.+++++++..+
T Consensus         3 iyld~a~~---~~-~p~~v~ea~~~~~~~~-~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~   77 (376)
T d1eg5a_           3 VYFDNNAT---TR-VDDRVLEEMIVFYREK-YGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWI   77 (376)
T ss_dssp             EECBTTTC---CC-CCHHHHHHHHHHHHTC-CCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHH
T ss_pred             EEEECccc---cc-CCHHHHHHHHHHHHHc-CCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhh
Confidence            46666654   33 5688999999888763 11111111111  1234556788999999975  556667778887777


Q ss_pred             hhh----hccCCcEEEEcCCchhHHHhH---hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567          186 IPC----FCKKGDLIVADEGVHWGIQNG---LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEA  253 (483)
Q Consensus       186 i~~----~~~~gdiI~~~~~~h~s~~~g---~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~  253 (483)
                      +..    ..+++++|+.....|.+....   ++..|.++++++.+     |++++++.+.   +       ++++|++..
T Consensus        78 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~---~-------~t~lv~is~  147 (376)
T d1eg5a_          78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD---E-------DTFLVSIMA  147 (376)
T ss_dssp             HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC---T-------TEEEEEEES
T ss_pred             hhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC---C-------CceEEEEEC
Confidence            643    457888998888888765543   44558899888754     4566655553   2       389999999


Q ss_pred             ccCCCCCccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHH
Q 011567          254 VYQNSGQIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSAR  330 (483)
Q Consensus       254 v~~~~G~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~  330 (483)
                      +.+.+|.+.|++++.++|+++  ++++++|.+|+.|.+.         .++...++|++++|.+|++|+.| |++..+++
T Consensus       148 v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~---------~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~  218 (376)
T d1eg5a_         148 ANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKGVGITYIRKG  218 (376)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTTCEEEEECTT
T ss_pred             CccccceeeeehhhhhhhhhcccCceeEEEeeecccccc---------ccccccCccceecccceeecCCCceeEEeccC
Confidence            999999999999999998766  8999999999987653         23333456999999999998776 55554443


Q ss_pred             HHHHHHhcCCc-----eeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEE
Q 011567          331 VVDHQRLSSSG-----YVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVF  402 (483)
Q Consensus       331 ~~~~~~~~~~~-----~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~  402 (483)
                      .  .++....+     ....+..+......+.+........ ...........+++.+.|.......+..  .....+..
T Consensus       219 ~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  296 (376)
T d1eg5a_         219 V--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLS  296 (376)
T ss_dssp             S--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEE
T ss_pred             c--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccccccceee
Confidence            2  11111100     0111223444444444444433322 2345555666677777776653222211  12334555


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCC-----CCceEEEccCCCCHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRL-----PVGIRLFVSAAHSEADLVKAC  468 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~-----~~~lRi~~~~~~t~edi~~~~  468 (483)
                      +.+....         ...+.. .|+++||.++.+......         ....     ++.||++++..+|++|||+++
T Consensus       297 ~~~~~~~---------~~~~~~-~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~  366 (376)
T d1eg5a_         297 VSFPNIR---------GSTLQN-LLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFL  366 (376)
T ss_dssp             EECTTCC---------HHHHHH-HHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHH
T ss_pred             eccCCCC---------HHHHHH-HHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHH
Confidence            5554321         123444 467789988654221100         0001     124999999999999999999


Q ss_pred             HHHHHHHH
Q 011567          469 ESLKRISA  476 (483)
Q Consensus       469 ~~l~~~~~  476 (483)
                      ++|++++.
T Consensus       367 ~~L~~iv~  374 (376)
T d1eg5a_         367 KKIEEILS  374 (376)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999986

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.2e-19  Score=180.03  Aligned_cols=352  Identities=11%  Similarity=0.018  Sum_probs=225.8

Q ss_pred             ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-------EEEeccc
Q 011567          106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-------SILYSYG  178 (483)
Q Consensus       106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-------~i~~~sG  178 (483)
                      .||+.-+|++|+....  -+|++.+.+.+.+.+--.   ....+..+...+.++-+.|++++|.++       .+++++|
T Consensus        50 ~dg~~~~n~asf~~t~--~~~~~~~l~~~~~~~N~~---~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~Gg  124 (450)
T d1pmma_          50 LDGNARQNLATFCQTW--DDENVHKLMDLSINKNWI---DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS  124 (450)
T ss_dssp             GSCCGGGBCSCCSCCC--CCHHHHHHHHHTTTCBTT---CTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSH
T ss_pred             cCCCccccccccccCC--CCHHHHHHHHHHHhcCCC---CcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCch
Confidence            4676667888762212  457887777777665322   112222345677778888999998532       5788999


Q ss_pred             HHHHHhhhhhhc-----------c-CCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhh
Q 011567          179 LSTMFSAIPCFC-----------K-KGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNK  240 (483)
Q Consensus       179 ~~a~~~ai~~~~-----------~-~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~  240 (483)
                      ++|+..++.+..           + ....+++....|.++.++++..|..++.++.+      |+++|++.+++      
T Consensus       125 SeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~------  198 (450)
T d1pmma_         125 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE------  198 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh------
Confidence            999988865432           1 12235556678999999999999988777542      67777766543      


Q ss_pred             hccCccEEEEEecccCCCCCccChHHHHHHH------HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc
Q 011567          241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLK------EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM  314 (483)
Q Consensus       241 ~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~------~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~  314 (483)
                          .+++|++....+.+|.+.|+++|.++|      +++|+++++|.+++++...-.-....-.+++  ..+|.+..|.
T Consensus       199 ----~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~--~~aDSi~~s~  272 (450)
T d1pmma_         199 ----NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASG  272 (450)
T ss_dssp             ----TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEET
T ss_pred             ----CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcc--cceeEeecCh
Confidence                367788777788899999998887775      5689999999999876532100000011333  5689999999


Q ss_pred             ccccc-CCC-ceeec-cHHHHHHHHhcCC---c-----eeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHH
Q 011567          315 GHALA-TEG-GFCTG-SARVVDHQRLSSS---G-----YVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILR  381 (483)
Q Consensus       315 ~K~lg-~~G-G~i~~-~~~~~~~~~~~~~---~-----~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~  381 (483)
                      +|.++ +.| |+++. ++...........   +     +....+-+...+.+...++..+-  ...+..++..+++++|.
T Consensus       273 HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~  352 (450)
T d1pmma_         273 HKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA  352 (450)
T ss_dssp             TTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99886 444 55544 4443322211100   1     11122223333333444554443  23568888999999999


Q ss_pred             HhhccCCCceeecC----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC
Q 011567          382 TGLSDIHGLSIASN----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA  457 (483)
Q Consensus       382 ~~L~~~~~~~i~~~----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~  457 (483)
                      +.|++.+++++..+    +..|++.+++.+.....    -...++.+. |.++|..+.....|..  .....-+|+.+..
T Consensus       353 ~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~----~~~~~l~~~-L~~~Gw~v~~~~~p~~--~~~~~~lRvvv~~  425 (450)
T d1pmma_         353 DEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG----YTLYDLSER-LRLRGWQVPAFTLGGE--ATDIVVMRIMCRR  425 (450)
T ss_dssp             HHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCS----SCHHHHHHH-HHTTTCBCCEEECCTT--CTTCEEEEEECCT
T ss_pred             HHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCC----CCHHHHHHH-HHHcCCeeeccCcCCC--cCCcEEEEEEccC
Confidence            99999988887642    34678999986543211    112356665 5567877654322211  0011239999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          458 AHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ..|++++|++++.|+++++.+.+.
T Consensus       426 ~~t~e~~d~lv~dl~~~v~~l~~~  449 (450)
T d1pmma_         426 GFEMDFAELLLEDYKASLKYLSDH  449 (450)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999987653

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.84  E-value=8.4e-20  Score=184.42  Aligned_cols=293  Identities=13%  Similarity=0.097  Sum_probs=188.4

Q ss_pred             HHHHHHHHhhhCCCCEE-Ee-cccHHHHHhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEec--------CCC
Q 011567          157 LDCEARIAKFLGTPDSI-LY-SYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFK--------HND  224 (483)
Q Consensus       157 ~~l~~~La~~~g~e~~i-~~-~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~--------~~d  224 (483)
                      .++...+++++|.+.+. .+ ++|++++.+++.+..  .+++.|++++..|.++.+++...|...+.++        +.|
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d  195 (434)
T d2z67a1         116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVP  195 (434)
T ss_dssp             HHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECC
T ss_pred             HHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCC
Confidence            34556677888876543 33 444455666666653  3788999999999999999999998876664        348


Q ss_pred             HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC
Q 011567          225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV  304 (483)
Q Consensus       225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~  304 (483)
                      +++|++.+++....     +.+.+|++....+..|.+.|+++|.++|++||+++|+|++|+.+.... +........   
T Consensus       196 ~~~l~~~i~~~~~~-----~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~-~~~~~~~~~---  266 (434)
T d2z67a1         196 VEDIENAIKKEIEL-----GNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY-LEKLKKAFK---  266 (434)
T ss_dssp             HHHHHHHHHHHHHT-----TCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH-HHHHHHHHT---
T ss_pred             HHHHHHHHHhhhhc-----CCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhc-ccccccccc---
Confidence            99999999875432     236778888877788999999999999999999999999997543110 111111111   


Q ss_pred             CceeEEEccccccccCC-C-ce-eeccHHHHHHHHhcCCceeecCCCcHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          305 DKIDIVTAAMGHALATE-G-GF-CTGSARVVDHQRLSSSGYVFSASLPPYLAS-AAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       305 ~~~Di~~~s~~K~lg~~-G-G~-i~~~~~~~~~~~~~~~~~~fs~~~~p~~~a-aa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      ..+|++++|.+|+++.+ | |+ +..++...+++....   .++.+..|...+ ++...+. .+...+..++..++.+++
T Consensus       267 ~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~l~~~~-~~g~~~~~~~~~~~a~~l  342 (434)
T d2z67a1         267 YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY---PGRASATPVVNTLVSLLSMG-SKNYLELVKNQKNSKKLL  342 (434)
T ss_dssp             SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS---CSCBCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc---ccccccchHHHHHHHHHHHH-HhcchhHHHHHHHHHHHH
Confidence            24589999999999743 3 33 345667777665432   223333333332 2222221 122245677778888888


Q ss_pred             HHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc------cCCCCCce
Q 011567          381 RTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD------KCRLPVGI  451 (483)
Q Consensus       381 ~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~------~~~~~~~l  451 (483)
                      ++.|+++   .+..+...+....+.+.+..       +   ..++... |.+.||.......+...      .....+.+
T Consensus       343 ~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~-------~---~~~l~~~-L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l  411 (434)
T d2z67a1         343 DELLNDLSKKTGGKFLDVESPIASCISVNS-------D---PVEIAAK-LYNLRVTGPRGIKKTDHFGNCYLGTYTHDYI  411 (434)
T ss_dssp             HHHHHHHHHHSSCCBCCCCCSSEEEEECSS-------C---HHHHHHH-HHHTTEESCEEECTTCHHHHTCSSCCSCCEE
T ss_pred             HHHHHHhhhhcCceecCCCCCceeeeecCC-------C---HHHHHHH-HHHcCCeeeehhhhccccCeeeecccCCCeE
Confidence            8888764   35666544334344444421       1   2245554 44568865433222111      11122459


Q ss_pred             EEEccCCCCHHHHHHHHHHHHH
Q 011567          452 RLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       452 Ri~~~~~~t~edi~~~~~~l~~  473 (483)
                      |++++..+|+||||+++++|++
T Consensus       412 ~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         412 VMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999986

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.84  E-value=6.1e-19  Score=172.71  Aligned_cols=215  Identities=13%  Similarity=0.168  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++-|.+.+++++||.+|+.+++.++.++||.|++....|+....-+    ...|.++..++..|.+.++
T Consensus        63 PT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~  142 (397)
T d1y4ia1          63 PTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIR  142 (397)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHH
Confidence            678899999999999999999999999999999999999999998888887765433    3558888889888888888


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.|++..+.++++|+++|+++|+++++|.+++...+-       .-+.   ..+||
T Consensus       143 ~~i~~----------~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~-------~Pl~---~GaDi  202 (397)
T d1y4ia1         143 AAMRP----------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-------QPLQ---LGADI  202 (397)
T ss_dssp             HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-------CGGG---GTCSE
T ss_pred             HhcCC----------CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccC-------cchh---cCCCE
Confidence            77643          3899999999999999999999999999999999999987643221       1111   22499


Q ss_pred             EEcccccccc----CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALA----TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg----~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.++    ..||.++++++.++..+.......+++.++|..+-.++..|+-+   .-++++..+|+..+.+.|+
T Consensus       203 vihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL---~lRm~~~~~nA~~lA~~L~  279 (397)
T d1y4ia1         203 VVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL---GIRMERHCENALKIARFLE  279 (397)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcH---HHHHHHHHHHHHHHHHHHH
Confidence            9999999997    34688999988777654332122335568899888887777655   3477888899999999998


Q ss_pred             cCCCce
Q 011567          386 DIHGLS  391 (483)
Q Consensus       386 ~~~~~~  391 (483)
                      +.+.+.
T Consensus       280 ~hp~V~  285 (397)
T d1y4ia1         280 GHPSIT  285 (397)
T ss_dssp             TCTTEE
T ss_pred             hCCCcC
Confidence            876553

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.83  E-value=6.7e-19  Score=174.66  Aligned_cols=315  Identities=16%  Similarity=0.169  Sum_probs=214.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW  204 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~  204 (483)
                      .+-.+++.+.|++...       .+...+...++|+++|+++|...++.++||++|+..|++++ .++||.|+++..++.
T Consensus        13 ~~~~~~~~~~l~~g~~-------~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~   85 (384)
T d1b9ha_          13 DAERNGLVRALEQGQW-------WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFI   85 (384)
T ss_dssp             HHHHHHHHHHHHTSCC-------BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred             HHHHHHHHHHHHcCCe-------eecCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccc
Confidence            4567788888886321       12223568899999999999999999999999999999987 589999999999999


Q ss_pred             HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567          205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV  278 (483)
Q Consensus       205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l  278 (483)
                      ++..++...|.+++.++.+      |++++++.+   .+       .+++|++.+++   |..++++++.++|++|++.+
T Consensus        86 a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i---~~-------~tk~i~~~~~~---g~~~d~~~i~~~~~~~~i~l  152 (384)
T d1b9ha_          86 SSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAV---TP-------RTKVIMPVHMA---GLMADMDALAKISADTGVPL  152 (384)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHC---CT-------TEEEECCBCGG---GCCCCHHHHHHHHHHHTCCB
T ss_pred             cccccccccccccccccccccccccchhhhcccc---cc-------ccccccccccc---ccccccccchhhhhhhhhhh
Confidence            9999999999998887643      566665543   22       36777776665   77789999999999999999


Q ss_pred             EEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeec-cHHHHHHHH---hcCCc-------ee---
Q 011567          279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTG-SARVVDHQR---LSSSG-------YV---  343 (483)
Q Consensus       279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~-~~~~~~~~~---~~~~~-------~~---  343 (483)
                      |.|.+|++|..-. |+... .+|    ++.+..++.+|.++ +.||+++. ++++.+.++   ..+..       |.   
T Consensus       153 ieD~a~a~ga~~~-g~~~g-~~g----~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  226 (384)
T d1b9ha_         153 LQDAAHAHGARWQ-GKRVG-ELD----SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKI  226 (384)
T ss_dssp             CEECTTCTTCEET-TEEGG-GSS----SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCS
T ss_pred             hhhhceecccccC-CEecC-ccc----ccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccc
Confidence            9999999876431 33221 122    12344444589885 45677655 455555432   21110       11   


Q ss_pred             --ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-----C-CCEEEEEecCCCCCchhh
Q 011567          344 --FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-----E-SPIVFLILEKSTGSMKND  415 (483)
Q Consensus       344 --fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-----~-~~i~~l~l~~~~~~~~~~  415 (483)
                        +..-++++.++.++..|+.++   +..++-+++.+++.+.|++++++......     . .....+.+...      .
T Consensus       227 ~G~n~rms~l~Aaig~~qL~~ld---~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~  297 (384)
T d1b9ha_         227 AGSNMRLNEFSASVLRAQLARLD---EQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL------T  297 (384)
T ss_dssp             CCCBCBCBHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC------C
T ss_pred             cccccccccchhhhhhhhhhhcc---cchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccc------c
Confidence              122378888888877776664   46777788999999999888776432211     1 12344444321      1


Q ss_pred             HHHHHHHHHHHHHhCCEEEEeeccccccc------------------CCCC-------CceEEEccCCCC-HHHHHHHHH
Q 011567          416 LQLLEDIADWALKEDGVFVVTSKRSMLDK------------------CRLP-------VGIRLFVSAAHS-EADLVKACE  469 (483)
Q Consensus       416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~------------------~~~~-------~~lRi~~~~~~t-~edi~~~~~  469 (483)
                      ...-.++.+. |+++||-++....| +..                  ...|       ..|.+..+..+| ++|++++++
T Consensus       298 ~~~Rd~l~~~-L~~~GI~~~~~y~p-lh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~  375 (384)
T d1b9ha_         298 EERRNALVDR-LVEAGLPAFAAFRA-IYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE  375 (384)
T ss_dssp             HHHHHHHHHH-HHHTTCCEEECCCC-GGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH
T ss_pred             cccHHHHHHH-HHHCCCCeeeeCcc-hhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHH
Confidence            1122356665 56679988765322 210                  0011       128888888888 679999999


Q ss_pred             HHHHHHHH
Q 011567          470 SLKRISAV  477 (483)
Q Consensus       470 ~l~~~~~~  477 (483)
                      +|++++.+
T Consensus       376 ~i~~~l~~  383 (384)
T d1b9ha_         376 IIADAVAR  383 (384)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998864

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.5e-19  Score=178.92  Aligned_cols=310  Identities=11%  Similarity=0.078  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHhhhCCC---CEEEecccHHHHH-hhh---hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----
Q 011567          155 VHLDCEARIAKFLGTP---DSILYSYGLSTMF-SAI---PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----  222 (483)
Q Consensus       155 ~~~~l~~~La~~~g~e---~~i~~~sG~~a~~-~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----  222 (483)
                      +..++.+.+++++|.+   .++++++|+++.. +++   +....+++.|++++..|.++.+++...|.+.+.++.     
T Consensus        95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~  174 (445)
T d3bc8a1          95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD  174 (445)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCc
Confidence            4455667788888854   4556677764433 333   334467789999999999999999999998776642     


Q ss_pred             ---CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccc
Q 011567          223 ---NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH  299 (483)
Q Consensus       223 ---~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~  299 (483)
                         -|+++|++.+++...+      .+++|++...++.+|.+.|+++|.++|++||+++|+|++++.+..+....+   .
T Consensus       175 ~~~id~~~l~~~i~~~~~~------~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~---~  245 (445)
T d3bc8a1         175 ELRTDLKAVEAKIQELGPE------HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI---Q  245 (445)
T ss_dssp             EEECCHHHHHHHHHHHCGG------GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH---H
T ss_pred             ccccCHHHHHHHHHhcccc------CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccc---h
Confidence               2899999999876543      377888888888889999999999999999999999999987643210000   0


Q ss_pred             cCCCCCceeEEEccccccccC-CC-cee-eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHH
Q 011567          300 CGVPVDKIDIVTAAMGHALAT-EG-GFC-TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLK  374 (483)
Q Consensus       300 ~~v~~~~~Di~~~s~~K~lg~-~G-G~i-~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~  374 (483)
                      .+.....+|+++.|.+|++++ .| |++ ..+....+.+.....   ++.+..+...  +..++..+.  ...+..++..
T Consensus       246 ~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~  320 (445)
T d3bc8a1         246 QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP---GRASASPSLD--VLITLLSLGCSGYRKLLKERK  320 (445)
T ss_dssp             HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC---SCBCSHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHh---hcccCcchHH--HHHHHHHHhhhcchhhHHHHH
Confidence            111113458999999998863 33 444 445566665543222   2222222222  122232222  1134556666


Q ss_pred             HHHHHHHHhhccCC---CceeecCCC-CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc----------
Q 011567          375 KNTAILRTGLSDIH---GLSIASNPE-SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS----------  440 (483)
Q Consensus       375 ~~~~~l~~~L~~~~---~~~i~~~~~-~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~----------  440 (483)
                      ++.+++.+.|.++.   +..+...+. .....+.+.........   ...++... |.+.||.......+          
T Consensus       321 ~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~l~~~-L~~~gI~~~~~~~~~~~~~i~~~~  396 (445)
T d3bc8a1         321 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK---AVTQLGSM-LFTRQVSGARAVPLGNVQTVSGHT  396 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSC---HHHHHHHH-HHHTTCCSCEEECSCCEEEETTEE
T ss_pred             HHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCC---CHHHHHHH-HHHcCCCcceeeccccccchhhhh
Confidence            77777777776532   444332223 33444444332221111   22345554 44456632211000          


Q ss_pred             ----cc-ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011567          441 ----ML-DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRDR  482 (483)
Q Consensus       441 ----~~-~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~~  482 (483)
                          .. .+....+.||++++..+|+||||+++++|+++++++-+++
T Consensus       397 ~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~  443 (445)
T d3bc8a1         397 FRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ  443 (445)
T ss_dssp             EETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence                00 0111123499999999999999999999999999987654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=9.8e-20  Score=174.67  Aligned_cols=326  Identities=17%  Similarity=0.092  Sum_probs=190.4

Q ss_pred             EeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc
Q 011567          113 NFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC  190 (483)
Q Consensus       113 d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~  190 (483)
                      +|.+-|..|  .||++.+|+.++...++.       .||..+...++++++++++|.+  +.+++++|++|+..++..+.
T Consensus         3 ~f~nd~~~g--~~P~v~eAl~~~~~~~~~-------~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~   73 (340)
T d1svva_           3 SFVNDYSVG--MHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL   73 (340)
T ss_dssp             ECSCSCSSC--CCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC
T ss_pred             CcccCCCCC--CCHHHHHHHHHHhhcCCC-------CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh
Confidence            564433333  589999999988776544       3566778889999999999976  34556889999999999999


Q ss_pred             cCCcEEEEcCCchhHHHhHhhhc--CC-eEEEecCC---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-
Q 011567          191 KKGDLIVADEGVHWGIQNGLYLS--RS-TVVYFKHN---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-  263 (483)
Q Consensus       191 ~~gdiI~~~~~~h~s~~~g~~~s--~~-~v~~~~~~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-  263 (483)
                      ++++.++.+...|.++.......  +. ........   +.+...+........    ......+++....++.|.+.+ 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  149 (340)
T d1svva_          74 RPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSE----HMVIPKLVYISNTTEVGTQYTK  149 (340)
T ss_dssp             CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCST----TSCEEEEEEEESSCTTSCCCCH
T ss_pred             hhccccccccccceeeeecccccccceeeeecccccccccchhHHHHhhhhhcc----cCCcceeeeecccccccccccH
Confidence            99999999998888765433222  22 22222222   222222322221111    112334444444455566655 


Q ss_pred             --hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCC
Q 011567          264 --LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSS  340 (483)
Q Consensus       264 --L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~  340 (483)
                        +..+.+.|+++|.++++|+++..+.+...+.........  ...++...+..|..+..+ ++...........+....
T Consensus       150 ~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (340)
T d1svva_         150 QELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIK  227 (340)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHH
T ss_pred             HHhhhhhcccccccceeeeeccceeeeeccccccccccccc--ccceeeecCCccccccccccccccchhhhhhhhhhcc
Confidence              677889999999999999999876655433322211111  111444444555554323 333333333222221111


Q ss_pred             ceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHH
Q 011567          341 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       341 ~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      ......+.+....+++.+.++.. ......++..++..++++.|+.. |+++..+..++++++.+..             
T Consensus       228 ~~~~~~~~~~~~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~-------------  292 (340)
T d1svva_         228 QRGALMAKGWLLGIQFEVLMKDN-LFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN-------------  292 (340)
T ss_dssp             HTTCCCTTTHHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH-------------
T ss_pred             cccCccchhhHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH-------------
Confidence            11111222333333332222211 11346677788888899999885 8888777788888887731             


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ..+.++++ ++........+.     .+..+|++++..+|++|||+++++|+++
T Consensus       293 ~~~~~l~~-~~~~~~~~~~~~-----~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         293 TMIAELNN-DFDMYTVEPLKD-----GTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             HHHHHHTT-TEECEEEEEETT-----TEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH-hhhhhcccccCC-----CCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            23444443 343322111110     0234999999999999999999999863

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=7.6e-19  Score=171.92  Aligned_cols=214  Identities=20%  Similarity=0.190  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++-|.+.+++|+||.+|+.+++.++.++||.|++....|+.+..-+    ...|.++..++..|.+.++
T Consensus        59 PT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~  138 (392)
T d1gc0a_          59 PTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALE  138 (392)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHH
Confidence            678899999999999999999999999999999999999998888777776655433    3457888888888888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.++.          ++++|++|.+.|++..+.|+++|+++|+++|+++++|.+++...+-+   .+  .+|     +||
T Consensus       139 ~ai~~----------~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~---Pl--~~G-----aDi  198 (392)
T d1gc0a_         139 AAMTP----------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---PL--ELG-----ADL  198 (392)
T ss_dssp             HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---GG--GGT-----CSE
T ss_pred             HhCCC----------CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccC---hH--HhC-----CCE
Confidence            77643          37999999999999999999999999999999999999987544321   11  133     389


Q ss_pred             EEcccccccc----CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALA----TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg----~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|.+|.++    ..||.++++++.++..+.......+++.+.|..|......++.+   +.++++..+|+..+.+.|+
T Consensus       199 vihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL---~lRm~~~~~nA~~lA~~L~  275 (392)
T d1gc0a_         199 VVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL---NLRMDRHCANAQVLAEFLA  275 (392)
T ss_dssp             EEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccH---HHHHHHHHHHHHHHHHHHH
Confidence            9999999997    34588889888877655332222345567898888777777655   3478888899999999998


Q ss_pred             cCCCc
Q 011567          386 DIHGL  390 (483)
Q Consensus       386 ~~~~~  390 (483)
                      +.+.+
T Consensus       276 ~hp~V  280 (392)
T d1gc0a_         276 RQPQV  280 (392)
T ss_dssp             TCTTE
T ss_pred             hCCCc
Confidence            87644

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.82  E-value=1.4e-19  Score=180.83  Aligned_cols=322  Identities=11%  Similarity=0.051  Sum_probs=197.8

Q ss_pred             EEEeecCCC---CCC-CCChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhh----C---CCCEEEeccc
Q 011567          111 VVNFASANY---LGL-IGHEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFL----G---TPDSILYSYG  178 (483)
Q Consensus       111 ~id~~s~~~---lG~-~~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~----g---~e~~i~~~sG  178 (483)
                      .||++-+.|   -|. ...+.|++|..+.+++-.. +++.   ..|.    .+|++.+++++    +   .++.++.+.|
T Consensus        30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~---~~G~----~~lr~aia~~~~~~~~~~~~~~~i~~~~~  102 (401)
T d7aata_          30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAGL----ADFTRASAELALGENSEAFKSGRYVTVQG  102 (401)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCC----HHHHHHHHHHHhccCCcccCcCceEEecc
Confidence            478776632   222 1346677777766665322 1221   2344    45555565554    3   2333333222


Q ss_pred             H------HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCc
Q 011567          179 L------STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKL  245 (483)
Q Consensus       179 ~------~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~  245 (483)
                      .      .++..++++++++||.|++..+++..+...+...|.+++.++..       |.+.+++.+....+       +
T Consensus       103 ~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  175 (401)
T d7aata_         103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE-------K  175 (401)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCT-------T
T ss_pred             chHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCC-------c
Confidence            1      34566678899999999999999999999999999999887642       44555444443222       4


Q ss_pred             cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc---cccCCCCCceeEEEcccccccc
Q 011567          246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT---EHCGVPVDKIDIVTAAMGHALA  319 (483)
Q Consensus       246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~---~~~~v~~~~~Di~~~s~~K~lg  319 (483)
                      ++++++...+|++|.+.+   +++|+++|++|++++|.||+|....++.......   ...... . .-+++.|++|.++
T Consensus       176 ~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~sk~~~  253 (401)
T d7aata_         176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQG-I-DVVLSQSYAKNMG  253 (401)
T ss_dssp             CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT-C-CCEEEEECTTTSC
T ss_pred             eEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhh-c-ccceeEeccccce
Confidence            788899999999999998   7999999999999999999998766543111010   111111 1 1355679999998


Q ss_pred             CCC---ceeeccHHHHHHHHhcC------CceeecCCCcHHHHHHHHHHHHH------H-hcCcHHHHHHHHHHHHHHHh
Q 011567          320 TEG---GFCTGSARVVDHQRLSS------SGYVFSASLPPYLASAAITAIDV------L-EENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       320 ~~G---G~i~~~~~~~~~~~~~~------~~~~fs~~~~p~~~aaa~~al~~------l-~~~~~~~~~l~~~~~~l~~~  383 (483)
                      ..|   ||++++..+.+......      ....++. .+...++++...++.      . ......+++++++++.+.+.
T Consensus       254 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  332 (401)
T d7aata_         254 LYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSN-PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN  332 (401)
T ss_dssp             CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccceeecchHHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666   99888766554432110      0111222 233333333223221      1 11134667777888888888


Q ss_pred             hccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567          384 LSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS  460 (483)
Q Consensus       384 L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t  460 (483)
                      |++..   .+....+..+.++++.+.         .    ++++++++++||++.             +|+||++.. .+
T Consensus       333 L~~~~~~~~~~~~~~~~G~F~~~~ls---------~----e~~~~L~~e~gV~~~-------------pg~Ris~a~-~~  385 (401)
T d7aata_         333 LKKEGSSHNWQHITDQIGMFCFTGLK---------P----EQVERLTKEFSIYMT-------------KDGRISVAG-VA  385 (401)
T ss_dssp             HHHTTCCSCCHHHHHCCSSEEECCCC---------H----HHHHHHHHHHCEECC-------------TTCEEEGGG-CC
T ss_pred             HHHhCCCCCcceECCCCeEEEecCCC---------H----HHHHHHHHhCCEEEC-------------CCcEEEecc-CC
Confidence            87752   133333335555554331         1    346667788899875             347999854 67


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011567          461 EADLVKACESLKRISA  476 (483)
Q Consensus       461 ~edi~~~~~~l~~~~~  476 (483)
                      +++|++++++|.++++
T Consensus       386 ~~~i~~la~ai~~v~k  401 (401)
T d7aata_         386 SSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             TTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            8899999999988763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.82  E-value=1.7e-18  Score=172.75  Aligned_cols=324  Identities=15%  Similarity=0.125  Sum_probs=200.8

Q ss_pred             CeeEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCcc--cChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567          108 GKEVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFY--GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM  182 (483)
Q Consensus       108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~--g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~  182 (483)
                      +.-|+|.++.   |. .+..+.+++.+.+.++ +..  ..+...  ...+..+++++++|+++|.+  +.++++++++++
T Consensus        27 ~~iYLd~as~---g~-~p~~v~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~  100 (404)
T d1qz9a_          27 GVIYLDGNSL---GA-RPVAALARAQAVIAEEWGNG--LIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINL  100 (404)
T ss_dssp             TCEECCTTTS---CC-CBTTHHHHHHHHHHTCCCCC--GGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHH
T ss_pred             CCEEcCCccc---cc-CCHHHHHHHHHHHHHHhccc--CcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHH
Confidence            4557776654   55 4578899999888653 221  111111  12356788999999999964  677778888887


Q ss_pred             Hhhhhh------hccCCcE-EEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567          183 FSAIPC------FCKKGDL-IVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV  251 (483)
Q Consensus       183 ~~ai~~------~~~~gdi-I~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~  251 (483)
                      ..++..      ..++++. |+.+...+.....    +.+.....+..-...+.+++++.+..          .+++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------~T~lV~i  170 (404)
T d1qz9a_         101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQ----------DTAVVML  170 (404)
T ss_dssp             HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCST----------TEEEEEE
T ss_pred             HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCC----------CceEEEE
Confidence            655432      2345664 4444444433222    22222333333333466666665432          4889999


Q ss_pred             ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC--ceeecc
Q 011567          252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG--GFCTGS  328 (483)
Q Consensus       252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G--G~i~~~  328 (483)
                      .++++.+|.+.|+++|.++|+++|+++++|.+|+.|...         ..+...++|++++|.+|.++ +.|  |++..+
T Consensus       171 ~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~  241 (404)
T d1qz9a_         171 THVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---------VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVS  241 (404)
T ss_dssp             ESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCHHHHTCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred             ecccccccceecHHHHhccccccccceeEEeeccccccc---------cccccccceEEEEechhhcccCCceEEEEEec
Confidence            999999999999999999999999999999999987543         22222345888899999884 333  666666


Q ss_pred             HHHHHHHHhcCC-------------ce-------ee-cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH---HHH
Q 011567          329 ARVVDHQRLSSS-------------GY-------VF-SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAI---LRT  382 (483)
Q Consensus       329 ~~~~~~~~~~~~-------------~~-------~f-s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~---l~~  382 (483)
                      +...+.+.....             .+       .| ..+.+........++++.+.+.  ..+.++...+...   +..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  321 (404)
T d1qz9a_         242 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVE  321 (404)
T ss_dssp             TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Confidence            555443221100             00       11 1234556666666667666543  2333333333333   333


Q ss_pred             hhccCCCceeecC----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-C
Q 011567          383 GLSDIHGLSIASN----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-A  457 (483)
Q Consensus       383 ~L~~~~~~~i~~~----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-~  457 (483)
                      .+...+++.+.++    ..++++.+.+.+           ..++++. |.++||.+... .        +..|||++. .
T Consensus       322 ~~~~~~~~~i~~p~~~~~r~~~vsf~~~~-----------~~~v~~~-L~~~gi~~~~r-~--------~~~lRiS~~h~  380 (404)
T d1qz9a_         322 QRCAAHELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQA-LIDRGVIGDYR-E--------PRIMRFGFTPL  380 (404)
T ss_dssp             HHHTTSCCEECSCSSGGGBCSEEEEECTT-----------HHHHHHH-HHTTTEECEEE-T--------TTEEEEECCTT
T ss_pred             hhccCCCEEEECCCCccceeeEEEEecCC-----------HHHHHHH-HHHCCCEEeec-C--------CCeEEEECCCC
Confidence            4445568887643    236787777632           2245654 66779976421 1        244999984 6


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 011567          458 AHSEADLVKACESLKRISAV  477 (483)
Q Consensus       458 ~~t~edi~~~~~~l~~~~~~  477 (483)
                      ++|++||++++++|++++++
T Consensus       381 ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         381 YTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999998865

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.1e-18  Score=166.41  Aligned_cols=212  Identities=15%  Similarity=0.144  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++-|.+.+++|+||.+|+.+++.+++++||.|++....++....-+    ...+..+..+...|.+.++
T Consensus        50 Pt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~  129 (384)
T d1cs1a_          50 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALR  129 (384)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHH
Confidence            678899999999999999999999999999999999999999999887777654333    3345677778888888887


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      ..+..          ++++|++|.+.|++..+.|+++|+++|+++|+++|+|.+.+...+-+   .    +.   ..+||
T Consensus       130 ~~~~~----------~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~---P----l~---~GaDi  189 (384)
T d1cs1a_         130 AALAE----------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---P----LA---LGADL  189 (384)
T ss_dssp             HHHHT----------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G----GG---GTCSE
T ss_pred             hhccc----------cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccccc---c----cc---cCCCE
Confidence            76654          37899999999999999999999999999999999999985432211   1    11   23499


Q ss_pred             EEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567          310 VTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L  384 (483)
                      ++.|.+|.+++    .||.+++ ++++.+.++..  ...++..++|..+-.+...|+-+   +-++++..+|+..+.+.|
T Consensus       190 VvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~--~~~~G~~~~p~~a~ll~rgL~TL---~lRm~~~~~nA~~lA~~L  264 (384)
T d1cs1a_         190 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW--ANNIGVTGGAFDSYLLLRGLRTL---VPRMELAQRNAQAIVKYL  264 (384)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH--HHHHTCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred             EEEccccccccCCCcccccccCCchhhhhhhhhh--hhhhhhccccccHHHHhhccchh---HHHHHHHHHHHHHHHHhc
Confidence            99999999973    4576666 44554544332  11234457888877776666655   457888899999999999


Q ss_pred             ccCCCc
Q 011567          385 SDIHGL  390 (483)
Q Consensus       385 ~~~~~~  390 (483)
                      ++.+.+
T Consensus       265 ~~hp~V  270 (384)
T d1cs1a_         265 QTQPLV  270 (384)
T ss_dssp             TTCTTE
T ss_pred             ccCCce
Confidence            887654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=4.5e-18  Score=166.98  Aligned_cols=292  Identities=15%  Similarity=0.168  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHhhhCCCC---EEEe-cccHHHHHhhhhhhccCCc-EEEEcCCchhHHH-hHhhhcCCeEEEec--CC--
Q 011567          154 DVHLDCEARIAKFLGTPD---SILY-SYGLSTMFSAIPCFCKKGD-LIVADEGVHWGIQ-NGLYLSRSTVVYFK--HN--  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~---~i~~-~sG~~a~~~ai~~~~~~gd-iI~~~~~~h~s~~-~g~~~s~~~v~~~~--~~--  223 (483)
                      +...+.+++|++++|.++   .+++ +||+.++..++..+..+++ +++.....+.... ......+.......  ..  
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            567899999999999753   3444 6778999998888776655 5555555444322 22233333333222  11  


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      .....+........       +++++.+..+.+.+|.+.|+++|.++|++||+++++|.+|+.|...         ++++
T Consensus       113 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~---------~d~~  176 (361)
T d1m32a_         113 PDVQAIDAILNADP-------TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP---------MDIA  176 (361)
T ss_dssp             CCHHHHHHHHHHCT-------TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTT
T ss_pred             ccchhhHHHHHhcc-------CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCccc---------cccc
Confidence            22233333333332       3788888899899999999999999999999999999999987543         4555


Q ss_pred             CCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCc----------------eeecCCCcHHHHHHHHHHHHHHhc
Q 011567          304 VDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSG----------------YVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~----------------~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      ..++|++++|.+|+++ +.| |++..+++..+.......+                ..+..+.+.....+...++.....
T Consensus       177 ~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~  256 (361)
T d1m32a_         177 ALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK  256 (361)
T ss_dssp             TTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH
Confidence            5677999999999995 445 7777777665443221111                011223344445555555554432


Q ss_pred             C---cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc
Q 011567          366 N---PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR  439 (483)
Q Consensus       366 ~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~  439 (483)
                      +   .....+.++..+.+++.+... ++.+..++  +++ ++.+.++.....      ...++... |.++|+.+..+..
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~~~------~~~~~~~~-l~~~gi~i~~G~~  328 (361)
T d1m32a_         257 EGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY------RFSEFYRR-LKEQGFVIYPGKV  328 (361)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC------CHHHHHHH-HHHTTEECEECCC
T ss_pred             hcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCCCC------CHHHHHHH-HHHCCcEEECCCc
Confidence            2   234556667777888887775 55543332  243 555665322111      12345665 4556998876532


Q ss_pred             cccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          440 SMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       440 ~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      .      .++.+||+....+|++||++++++|++++
T Consensus       329 ~------~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         329 S------QSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             S------SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             C------CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            1      13458998655689999999999999875

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.81  E-value=1.1e-17  Score=164.02  Aligned_cols=214  Identities=14%  Similarity=0.111  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++||++-|.+.+++|+||.+|+.+++.++.++||.|++....|+.+..-    +...|.++..+...|.+..+
T Consensus        67 Pt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~  146 (398)
T d1qgna_          67 PTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALE  146 (398)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhh
Confidence            67889999999999999999999999999999999999999999888877766543    33456677777766655554


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI  309 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di  309 (483)
                      +.+..  .       ++++|++|.+.|++..+.|+++|+++|+++|+++++|.+.+...+-+       -+.   ..+||
T Consensus       147 ~~~~~--~-------~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~-------Pl~---~GaDi  207 (398)
T d1qgna_         147 LALNQ--K-------KVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK-------ALA---LGADL  207 (398)
T ss_dssp             HHHHH--S-------CEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-------TTT---TTCSE
T ss_pred             hhhcc--c-------cceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCC-------chh---hCCCE
Confidence            43322  1       48899999999999999999999999999999999999975432211       111   23599


Q ss_pred             EEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhc
Q 011567          310 VTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLS  385 (483)
Q Consensus       310 ~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~  385 (483)
                      ++.|++|.+++    .||.++++++..+.++..  ...+++.++|..+...+..++-+   +.+.++..+|+..+.+.|+
T Consensus       208 VihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~--~~~~G~~l~p~~a~ll~rgl~TL---~lRm~~~~~nA~~lA~~L~  282 (398)
T d1qgna_         208 VLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL--HHILGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILE  282 (398)
T ss_dssp             EEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhcCcccceeehhhcchhhhhhhhhhh--cccCCCcCCHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHH
Confidence            99999999973    358888888887776543  22345567898888777766655   4578888999999999998


Q ss_pred             cCCCce
Q 011567          386 DIHGLS  391 (483)
Q Consensus       386 ~~~~~~  391 (483)
                      +.+.+.
T Consensus       283 ~hp~V~  288 (398)
T d1qgna_         283 AHPKVR  288 (398)
T ss_dssp             TCTTEE
T ss_pred             hCCCee
Confidence            876543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.80  E-value=9.1e-18  Score=165.73  Aligned_cols=312  Identities=13%  Similarity=0.128  Sum_probs=210.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc---cCCcEEEEcCCc
Q 011567          126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGV  202 (483)
Q Consensus       126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~~~~  202 (483)
                      ++-.+++.+.++. |        .+++.+...++|+++++++|...++.++||+.|+..+++++.   +++|.|+++..+
T Consensus        12 ~~~~~~v~~~l~~-~--------~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t   82 (371)
T d2fnua1          12 KEDKKAVLEVLNS-K--------QLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   82 (371)
T ss_dssp             HHHHHHHHHHHTS-S--------CCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             HHHHHHHHHHHcC-C--------CccCCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccccc
Confidence            4556788888865 2        233446789999999999999999999999999999998874   334589999999


Q ss_pred             hhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567          203 HWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR  277 (483)
Q Consensus       203 h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~  277 (483)
                      +.++..++...|.+++.++.+     +.+++++.+   .       .++++|++.+.+   |..++++++.++|+++|+.
T Consensus        83 ~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~---~-------~~t~avi~vh~~---G~~~~~~~i~~~~~~~~i~  149 (371)
T d2fnua1          83 FVATANMLLESGYTPVFAGIKNDGNIDELALEKLI---N-------ERTKAIVSVDYA---GKSVEVESVQKLCKKHSLS  149 (371)
T ss_dssp             CTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGC---C-------TTEEEEEEECGG---GCCCCHHHHHHHHHHHTCE
T ss_pred             ccccceeeeccCcccccccccccccccchhhhhhc---c-------chhhcccccccc---ccccccccccccccccchh
Confidence            999999999999999888754     223332211   1       236677766666   8888999999999999999


Q ss_pred             EEEeCccccccccCCCCccccccCCCCCceeEEEccc--ccccc-CCCceeec-cHHHHHHHHhcC-Cc--------e--
Q 011567          278 VFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALA-TEGGFCTG-SARVVDHQRLSS-SG--------Y--  342 (483)
Q Consensus       278 li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg-~~GG~i~~-~~~~~~~~~~~~-~~--------~--  342 (483)
                      +|.|.+|++|..-. |+.    .|-. .  |+.+.||  .|.++ +.||+++. ++++.+.++... .+        +  
T Consensus       150 lIEDaaqa~Ga~~~-~~~----~G~~-g--~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~  221 (371)
T d2fnua1         150 FLSDSSHALGSEYQ-NKK----VGGF-A--LASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV  221 (371)
T ss_dssp             EEEECTTCTTCEET-TEE----TTSS-S--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred             hccchhhccCceec-ccc----CCcc-c--cccccccccccccccccceEEEeechhhhhhccccccccccccccccccc
Confidence            99999999875321 221    1221 2  4445566  78886 34677655 456666554211 11        1  


Q ss_pred             ---eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec-----CCCCCEEEEEecCCCCCchh
Q 011567          343 ---VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS-----NPESPIVFLILEKSTGSMKN  414 (483)
Q Consensus       343 ---~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-----~~~~~i~~l~l~~~~~~~~~  414 (483)
                         .+..-++.+.++.++..|+.++   +..++-+++.+++.+.|++.+++.+..     ......+.+.+.+...    
T Consensus       222 ~~~G~n~r~sel~Aaigl~qL~~l~---~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----  294 (371)
T d2fnua1         222 KSIGHNFRLNEIQSALGLSQLKKAP---FLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----  294 (371)
T ss_dssp             SSCCCBCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----
T ss_pred             ccccccccccchhhhhhhhhhhhcc---chhhhhhhhhhhhcccccccccccccccccccccccccccccccccch----
Confidence               1233478888888888777664   466777788888889998876655432     1123345555543211    


Q ss_pred             hHHHHHHHHHHHHHhCCEEEEeeccccc---------ccCCCCC-------ceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          415 DLQLLEDIADWALKEDGVFVVTSKRSML---------DKCRLPV-------GIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---------~~~~~~~-------~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      .  .-.++.+. |+++||-+++...|..         .+...|.       .|.+.++..+|++|++++++.|++.+++
T Consensus       295 ~--~r~~~~~~-L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         295 T--CKKLILES-LHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             G--GHHHHHHH-HHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             h--HHHHHHHH-HHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            0  11245554 5667998875433211         1111222       2777778889999999999999988765

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.80  E-value=3.3e-18  Score=168.04  Aligned_cols=337  Identities=16%  Similarity=0.152  Sum_probs=211.6

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccCh--HHHHHH-HHHHHhhhCCCCE-----EEeccc
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--DVHLDC-EARIAKFLGTPDS-----ILYSYG  178 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~~~~~l-~~~La~~~g~e~~-----i~~~sG  178 (483)
                      ++.|++..+ |+    ..|.+.++....+ .+|..|.+|.|.+.|+.  |..+.+ .++..++|+.+.+     +-..||
T Consensus        27 ~~~l~LiaSEN~----~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SG  102 (463)
T d2a7va1          27 CRGLELIASENF----CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG  102 (463)
T ss_dssp             HHSEECCTTCCC----CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred             hcCeeEeccCCc----CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccccc
Confidence            356777765 65    5688998888777 46988999988666652  333333 4667778998864     555899


Q ss_pred             HHHHHhhhhhhccCCcEEEEcCCchhHHH-hH-------hhhcCC--eEEEecCC------CHHHHHHHHHHhhhhhhhc
Q 011567          179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQ-NG-------LYLSRS--TVVYFKHN------DMDSLRNTLERVTADNKRA  242 (483)
Q Consensus       179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~-~g-------~~~s~~--~v~~~~~~------d~~~Le~~l~~~~~~~~~~  242 (483)
                      +.|+.++..++.++||.|+.-...|+... .|       ...++.  +...+..+      |++.++++.++..      
T Consensus       103 s~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~k------  176 (463)
T d2a7va1         103 SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR------  176 (463)
T ss_dssp             HHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcC------
Confidence            99999999999999999886554443322 11       222222  22333222      8899999888765      


Q ss_pred             cCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccc-cC
Q 011567          243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHAL-AT  320 (483)
Q Consensus       243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~l-g~  320 (483)
                         .++|++-.  +..-...|+++++++|++.|.+|++|-+|-.|.+.   .|.. .-+    ...|++++|.+|+| |+
T Consensus       177 ---PklIi~G~--S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA---~g~~~sP~----~~aDvvt~tTHKTlrGP  244 (463)
T d2a7va1         177 ---PRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVA---AKVIPSPF----KHADIVTTTTHKTLRGA  244 (463)
T ss_dssp             ---CSEEEECC--SSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHH---TTSSCCGG----GTCSEEEEESSGGGCSC
T ss_pred             ---CceEEecc--cccccccCHHHHHHHhhcccceEEechhhhhHHhh---hhhhcChh----hhhhhhhchhhhhhcCC
Confidence               35776643  22244567999999999999999999999877654   1222 112    23499999999999 68


Q ss_pred             CCceeeccH---------------HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhh
Q 011567          321 EGGFCTGSA---------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       321 ~GG~i~~~~---------------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L  384 (483)
                      .||+++.++               ++.+.+...-.+...++..+...++-|.+..+.++ +..+..+++.+|++.|.+.|
T Consensus       245 rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L  324 (463)
T d2a7va1         245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL  324 (463)
T ss_dssp             SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            899998765               44444443322323333333333333333333333 23568889999999999999


Q ss_pred             ccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCC
Q 011567          385 SDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAH  459 (483)
Q Consensus       385 ~~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~  459 (483)
                      .+. |+++.+ ..++.++.+.+.+...    +.    ..+...|++.||.+.....|.-+....|.||||..+    ...
T Consensus       325 ~~~-G~~vv~ggTdnHlvlvdl~~~~~----~G----~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~  395 (463)
T d2a7va1         325 LER-GYSLVSGGTDNHLVLVDLRPKGL----DG----ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF  395 (463)
T ss_dssp             HHT-TCEEGGGSCSSSEEEEECTTTTC----CH----HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred             HhC-CCeeecCCCCCceeeeeccccCC----CH----HHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCC
Confidence            985 999874 3577888888754321    11    335556788899998776554322224568999654    357


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRISA  476 (483)
Q Consensus       460 t~edi~~~~~~l~~~~~  476 (483)
                      .++|+.++.+.|.+++.
T Consensus       396 ~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         396 REDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            88999999999988875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.80  E-value=1.3e-17  Score=164.50  Aligned_cols=295  Identities=15%  Similarity=0.150  Sum_probs=191.1

Q ss_pred             hHHHHHHHHHHHhhhCCC--CEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHh--HhhhcCCeEEEe--cCCCH
Q 011567          153 IDVHLDCEARIAKFLGTP--DSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN--GLYLSRSTVVYF--KHNDM  225 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~--g~~~s~~~v~~~--~~~d~  225 (483)
                      .+...+.++.|+++++.+  ..+++ ++|+.++..++..+..+++.++.....|++...  .....+.....+  +.++.
T Consensus        50 ~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (377)
T d1vjoa_          50 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV  129 (377)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhcccccccccCCCCc
Confidence            368899999999999964  46666 667899999999999999988777777765432  222333333332  33322


Q ss_pred             HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      ...+.........      .++++.+..+.+.+|.+.|++++.++|+++|.++++|.++++|.+.         +.++..
T Consensus       130 ~~~~~~~~~~~~~------~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~---------~~~~~~  194 (377)
T d1vjoa_         130 FSLEELRTALETH------RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVP---------IFLDAW  194 (377)
T ss_dssp             CCHHHHHHHHHHH------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTT
T ss_pred             ccchhhhhhhhcC------cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhh---------hccccc
Confidence            2222222221111      2567777788888999999999999999999999999999987543         344445


Q ss_pred             ceeEEEccccccccCC-C-ceeeccHHHHHHHHhcCCc------------------eeecCCCcHHHHHHHHHHHHHHhc
Q 011567          306 KIDIVTAAMGHALATE-G-GFCTGSARVVDHQRLSSSG------------------YVFSASLPPYLASAAITAIDVLEE  365 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~~~~~------------------~~fs~~~~p~~~aaa~~al~~l~~  365 (483)
                      ++|++++|.+|+++++ | |++..++...+.......+                  ..+.+..+...+.+..++...+.+
T Consensus       195 ~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  274 (377)
T d1vjoa_         195 GVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ  274 (377)
T ss_dssp             TCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhh
Confidence            6699999999998633 3 6667777776654332211                  111222233333444445544432


Q ss_pred             C--cHHHHHHHHHHHHHHHhhccCCCceeecC--CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567          366 N--PDLITKLKKNTAILRTGLSDIHGLSIASN--PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS  440 (483)
Q Consensus       366 ~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~  440 (483)
                      .  ....++.+++..++++.+... ++.+..+  ..++ ++.+.+++..        ...+++..+++++||.+..+..+
T Consensus       275 ~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~--------~~~~l~~~L~~~~gI~v~~G~~~  345 (377)
T d1vjoa_         275 EGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV--------DGKAVARRLLNEHNIEVGGGLGE  345 (377)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGG
T ss_pred             cCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCCC--------CHHHHHHHHHhcCCEEEecCccc
Confidence            2  456777788888899988775 5554322  2344 5566664311        12356776667779988765332


Q ss_pred             ccccCCCCCceEEE-ccCCCCHHHHHHHHHHHHHHHH
Q 011567          441 MLDKCRLPVGIRLF-VSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       441 ~~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      .     -.+.+||+ +....|+|||++++++|+++++
T Consensus       346 ~-----~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         346 L-----AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             G-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             c-----cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            1     02349998 4667799999999999998863

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=8.7e-18  Score=165.57  Aligned_cols=338  Identities=16%  Similarity=0.181  Sum_probs=223.6

Q ss_pred             eeEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHHHH----HHHHhhhCCC-C---E-EEecc
Q 011567          109 KEVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTP-D---S-ILYSY  177 (483)
Q Consensus       109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e-~---~-i~~~s  177 (483)
                      ++.|++..+ |+    ..|.+.++.-..+. +|..|.+|.|.+.|+ +...++|    ++..++|+.+ +   + +-..|
T Consensus        31 ~~~l~LIaSEN~----~S~~v~~algS~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~S  105 (470)
T d1rv3a_          31 RVGLELIASENF----ASRAVLEALGSCLNNKYSLGYPGQRYYGGT-EHIDELETLCQKRALQAYGLDPQCWGVNVQPYS  105 (470)
T ss_dssp             HSSEECCTTCCC----CCHHHHHHHTSGGGTCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS
T ss_pred             HcCceEecCCCc----CCHHHHHHhcchhcccccCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCChhhccccccccC
Confidence            356887765 66    56889988887774 688888898865554 4444444    5557788876 2   2 23389


Q ss_pred             cHHHHHhhhhhhccCCcEEEEcCCchhHHHh-Hh-------hhc--CCeEEEecCC------CHHHHHHHHHHhhhhhhh
Q 011567          178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQN-GL-------YLS--RSTVVYFKHN------DMDSLRNTLERVTADNKR  241 (483)
Q Consensus       178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~-g~-------~~s--~~~v~~~~~~------d~~~Le~~l~~~~~~~~~  241 (483)
                      |+.|+.++..++.++||.|+.-...|+.... |.       ..+  ..+.+.++.+      |++.++++.++..     
T Consensus       106 Gs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~k-----  180 (470)
T d1rv3a_         106 GSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFH-----  180 (470)
T ss_dssp             HHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----
T ss_pred             CccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhC-----
Confidence            9999999999999999999876555443221 11       111  1234444422      8899998887765     


Q ss_pred             ccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cC
Q 011567          242 AKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-AT  320 (483)
Q Consensus       242 ~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~  320 (483)
                          .++|++-.  +..-...|+++++++|++.|.+|++|-+|-.|.+.. |. +..-+    +..|++++|.+|+| |+
T Consensus       181 ----PklIi~G~--S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~-g~-~~sPl----~~aDvvt~tTHKtlrGP  248 (470)
T d1rv3a_         181 ----PKLIIAGT--SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVA-GV-VPSPF----EHCHVVTTTTHKTLRGC  248 (470)
T ss_dssp             ----CSEEEECC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH-TS-SCCGG----GTCSEEEEESSGGGCCC
T ss_pred             ----cceEeech--hhccccCCHHHHHHHHhccCCeEEecchhhhhhccc-cc-cCChh----heeeeeeeehhhhccCC
Confidence                35666643  222445679999999999999999999998776531 11 11112    23499999999999 68


Q ss_pred             CCceeeccHH---------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhh
Q 011567          321 EGGFCTGSAR---------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGL  384 (483)
Q Consensus       321 ~GG~i~~~~~---------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L  384 (483)
                      .||+++.+++               +.+.+...-.+...++..+...++.|.+..+.+. +..+..+++.+|++.|.+.|
T Consensus       249 rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L  328 (470)
T d1rv3a_         249 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAAL  328 (470)
T ss_dssp             SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            8999987653               4444433322322233233333333333333332 23568888999999999999


Q ss_pred             ccCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc----cCCC
Q 011567          385 SDIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV----SAAH  459 (483)
Q Consensus       385 ~~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~----~~~~  459 (483)
                      .+. |+++.. ..++.++.+.+.+...    +.    ..+.+.|++.||.+.....|.-+....+.||||..    +...
T Consensus       329 ~~~-G~~v~~ggTdnHlvlvdl~~~g~----~g----~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~  399 (470)
T d1rv3a_         329 VEL-GYKIVTGGSDNHLILVDLRSKGT----DG----GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL  399 (470)
T ss_dssp             HHT-TCEEGGGSCSSSEEEEEGGGGTC----CH----HHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC
T ss_pred             HhC-CceeccCCCCCceEEEeecccCC----cH----HHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCC
Confidence            985 999874 4567788888753211    11    23555678889998876555432223467899964    3467


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 011567          460 SEADLVKACESLKRISAV  477 (483)
Q Consensus       460 t~edi~~~~~~l~~~~~~  477 (483)
                      .++|+.++.+.|.++++.
T Consensus       400 ~e~dm~~iA~~I~~~l~~  417 (470)
T d1rv3a_         400 LEKDFQKVAHFIHRGIEL  417 (470)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            899999999999998854

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.79  E-value=4.9e-18  Score=163.36  Aligned_cols=210  Identities=14%  Similarity=0.152  Sum_probs=165.8

Q ss_pred             HHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHHHHHH
Q 011567          158 DCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLRNTLE  233 (483)
Q Consensus       158 ~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le~~l~  233 (483)
                      .||++||++-|.+.++.|+||.+|+.+++.++.++||.|++....|+.+..-    +.-.|.++..++..|.+.+++.++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            5899999999999999999999999999999999999888887777665433    345678888888888888877654


Q ss_pred             HhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHH-HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEc
Q 011567          234 RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK-EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTA  312 (483)
Q Consensus       234 ~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~-~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~  312 (483)
                      .          .+++|++|.+.+++..+.+++++++++ +++|+++++|.+.+...+-+       -+.   ..+||++.
T Consensus        82 ~----------~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~-------pl~---~GaDiVv~  141 (331)
T d1pffa_          82 P----------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN-------PLD---LGVDIVVH  141 (331)
T ss_dssp             T----------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC-------GGG---GTCSEEEE
T ss_pred             c----------ccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccccc-------ccc---cCCCEEEe
Confidence            3          388999999999999999999999986 56899999999976433211       111   22499999


Q ss_pred             cccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC
Q 011567          313 AMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH  388 (483)
Q Consensus       313 s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~  388 (483)
                      |++|.+++    .||.++++++.....+.......+++.+.|..+......++-+.   .+.++..+|+..+.+.|++.+
T Consensus       142 S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~---~Rm~~~~~nA~~lA~~L~~hp  218 (331)
T d1pffa_         142 SATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLD---MRVKRAAENAQKVAEFLHEHK  218 (331)
T ss_dssp             ETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT
T ss_pred             cchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhCC
Confidence            99999973    45888888777666554433344566788999988888887774   478888899999999998876


Q ss_pred             Cc
Q 011567          389 GL  390 (483)
Q Consensus       389 ~~  390 (483)
                      .+
T Consensus       219 ~V  220 (331)
T d1pffa_         219 AV  220 (331)
T ss_dssp             TC
T ss_pred             cE
Confidence            54

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.3e-18  Score=166.35  Aligned_cols=214  Identities=14%  Similarity=0.144  Sum_probs=168.3

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L  228 (483)
                      .+....||++|+++-|.+.++.|+||.+|+.+++.++.++||.|++....|+.+..-+    ...|.++..++..|.+++
T Consensus        57 nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~  136 (391)
T d1cl1a_          57 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADI  136 (391)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGG
T ss_pred             ChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCcccccc
Confidence            4678999999999999999999999999999999999999999999998888766543    345778888888888777


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCc
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK  306 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~  306 (483)
                      ++.++.          ++++|++|.+.+++..+.++++++++|+++  |+++++|.+.+...+-+       -+.   ..
T Consensus       137 ~~~i~~----------~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~-------Pl~---~G  196 (391)
T d1cl1a_         137 VKHLQP----------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFK-------ALD---FG  196 (391)
T ss_dssp             GGTCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSC-------GGG---GT
T ss_pred             cccccc----------ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhc-------ccc---cc
Confidence            655432          379999999999999999999999999775  99999999986433211       111   23


Q ss_pred             eeEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567          307 IDIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT  382 (483)
Q Consensus       307 ~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~  382 (483)
                      +||++.|++|.+++    .||.++++++..+.+....  ..+++.+.|..+......++-+   ..+.++..+++..+.+
T Consensus       197 aDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~--~~~G~~~~p~~a~ll~rgl~TL---~lR~~~~~~nA~~vA~  271 (391)
T d1cl1a_         197 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQMVDADTAYITSRGLRTL---GVRLRQHHESSLKVAE  271 (391)
T ss_dssp             CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred             cceEEeecchhccccccccccceeccccccccchhhh--hcccccCCchhhhhhhccchhH---HHHHHHHHHHHHHHHH
Confidence            49999999999973    4688888887776654432  2344567888877776666655   4578888899999999


Q ss_pred             hhccCCCce
Q 011567          383 GLSDIHGLS  391 (483)
Q Consensus       383 ~L~~~~~~~  391 (483)
                      .|++.+.+.
T Consensus       272 ~L~~hp~V~  280 (391)
T d1cl1a_         272 WLAEHPQVA  280 (391)
T ss_dssp             HHHTCTTEE
T ss_pred             HHHhccccc
Confidence            998876544

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.79  E-value=2.6e-17  Score=162.61  Aligned_cols=317  Identities=12%  Similarity=0.170  Sum_probs=205.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchhHHH
Q 011567          129 LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGIQ  207 (483)
Q Consensus       129 ~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~s~~  207 (483)
                      ++++.+.+++. .       ..+..+...++|+.+++++|...++.++||+.|+..|++++ .++||.|+++..++.++.
T Consensus         4 ~~~~~~~l~~~-~-------~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~   75 (374)
T d1o69a_           4 LKYIEEVFKSN-Y-------IAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV   75 (374)
T ss_dssp             HHHHHHHHHHT-T-------TSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT
T ss_pred             HHHHHHHHhcC-C-------cCCCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH
Confidence            57788888762 2       11123678999999999999999999999999999999988 688999999999999999


Q ss_pred             hHhhhcCCeEEEecCCC-----HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeC
Q 011567          208 NGLYLSRSTVVYFKHND-----MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDE  282 (483)
Q Consensus       208 ~g~~~s~~~v~~~~~~d-----~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DE  282 (483)
                      .++...|.+++.++.++     ..+.+........       ++++|++.+.+   |..++++++.++|+++|+.||.|.
T Consensus        76 ~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~-------~~~aii~~~~~---G~~~d~~~i~~~~~~~~i~vIED~  145 (374)
T d1o69a_          76 APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEK-------KPKALILTHLY---GNAAKMDEIVEICKENDIVLIEDA  145 (374)
T ss_dssp             HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSS-------CCCEEEEECGG---GCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHhhccceeEecccccccccccccccccchhccc-------ccccccccccc---cchhhhHHHHHHhhccCcchhhhh
Confidence            99999999999887541     1222222222222       35666666655   778899999999999999999999


Q ss_pred             ccccccccCCCCccccccCCCCCceeEEEccc--cccccC-CCcee-eccHHHHHHHHhc---CCce---------eecC
Q 011567          283 SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT-EGGFC-TGSARVVDHQRLS---SSGY---------VFSA  346 (483)
Q Consensus       283 a~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~-~GG~i-~~~~~~~~~~~~~---~~~~---------~fs~  346 (483)
                      +|++|..- .|+.    .|-. .  |+.+.||  +|.++. .||++ ..++++.+..+..   +...         .+..
T Consensus       146 a~a~g~~~-~~~~----~G~~-g--d~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~  217 (374)
T d1o69a_         146 AEALGSFY-KNKA----LGTF-G--EFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNY  217 (374)
T ss_dssp             TTCTTCEE-TTEE----TTSS-S--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBC
T ss_pred             hhhhcceE-CCee----cCCC-C--ceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccc
Confidence            99987532 1221    1211 1  6777777  488863 34555 4566777665422   1111         1223


Q ss_pred             CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec-C--CCCCEEEEEecCCCC-------------
Q 011567          347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS-N--PESPIVFLILEKSTG-------------  410 (483)
Q Consensus       347 ~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~--~~~~i~~l~l~~~~~-------------  410 (483)
                      -++.+.++.+...|+.+.   +..++-+++.+++.+.|.+...+.... .  ....+..+.+.....             
T Consensus       218 rm~ei~Aaig~~qL~~l~---~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (374)
T d1o69a_         218 RLSNVLGAIGVAQMEVLE---QRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQ  294 (374)
T ss_dssp             BCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCC
T ss_pred             cccchhhhhhHHHHhhhh---hhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccch
Confidence            478999998888887664   356666778888888887642211100 0  011122222211000             


Q ss_pred             CchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCCCC-------ceEEEccCCCCHHHHHHHHHHHHHH
Q 011567          411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRLPV-------GIRLFVSAAHSEADLVKACESLKRI  474 (483)
Q Consensus       411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~~~-------~lRi~~~~~~t~edi~~~~~~l~~~  474 (483)
                      ..........++.+. |+++||-+++...| +..         ...|.       .|.+.++..+|++|++++++.|.++
T Consensus       295 ~~~~~~~~r~~l~~~-L~~~gI~~r~~y~p-l~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~  372 (374)
T d1o69a_         295 KNITLHPKISKLIED-LKNKQIETRPLWKA-MHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKS  372 (374)
T ss_dssp             CCCCCCHHHHHHHHH-HHHTTCCCBCCCCC-GGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             hhccchhhHHHHHHH-HHHCCCCEEEeCcc-hhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHH
Confidence            000011123356664 56679987654322 110         01122       2777778889999999999999987


Q ss_pred             HH
Q 011567          475 SA  476 (483)
Q Consensus       475 ~~  476 (483)
                      ++
T Consensus       373 lk  374 (374)
T d1o69a_         373 IK  374 (374)
T ss_dssp             HC
T ss_pred             HC
Confidence            63

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.8e-17  Score=161.72  Aligned_cols=212  Identities=18%  Similarity=0.174  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~L  228 (483)
                      .+....||++||.+-|.+.+++|+||.+|+. ++-++.++||.|++....|+.+..-++    ..|.++..+...|.+++
T Consensus        48 nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~  126 (380)
T d1ibja_          48 NPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEV  126 (380)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHH
T ss_pred             ChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHH
Confidence            3567899999999999999999999999985 667788999999999998888765543    35677878888888888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID  308 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D  308 (483)
                      ++.++.          ++++|++|.+.|++..+.|+++|+++|++||+++|+|.+++...+-   +.    +.   ..+|
T Consensus       127 ~~ai~~----------~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~---~P----l~---~GaD  186 (380)
T d1ibja_         127 AAAIGP----------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---RP----LE---LGAD  186 (380)
T ss_dssp             HHHCCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---CG----GG---TTCS
T ss_pred             HHHhcc----------CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccc---cc----cc---cCCC
Confidence            776633          4899999999999999999999999999999999999998643321   11    11   2349


Q ss_pred             EEEccccccccC----CCceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          309 IVTAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       309 i~~~s~~K~lg~----~GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      |++.|++|.+++    .||.++. ++++.+.++..  ...++..++|..+......++-+   +.+.++..+|+..+.+.
T Consensus       187 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~--~~~~G~~l~p~~a~ll~rgl~Tl---~lRm~~~~~nA~~lA~~  261 (380)
T d1ibja_         187 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL--QNSEGSGLAPFDCWLCLRGIKTM---ALRIEKQQENARKIAMY  261 (380)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH--HHHTTCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred             EEEecccceeccccCccccccccchhhHHHHHHhh--ccccCCcCCHHHHHHHHhcchhh---hhhHHHHHHHHHHHHHH
Confidence            999999999973    4576554 45555554432  12334567898888887777655   34788889999999999


Q ss_pred             hccCCCc
Q 011567          384 LSDIHGL  390 (483)
Q Consensus       384 L~~~~~~  390 (483)
                      |++.+.+
T Consensus       262 L~~hp~V  268 (380)
T d1ibja_         262 LSSHPRV  268 (380)
T ss_dssp             HHTCTTC
T ss_pred             HHhCCCe
Confidence            9887654

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.78  E-value=6.9e-17  Score=158.51  Aligned_cols=215  Identities=13%  Similarity=0.117  Sum_probs=171.3

Q ss_pred             hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHH
Q 011567          153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL  228 (483)
Q Consensus       153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~L  228 (483)
                      .+....||++|+++-|.+.++.|+||.+|+.+++.++.++||.|++....++.+..-    +...|..+..++..|.+++
T Consensus        58 nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~  137 (394)
T d1e5ea_          58 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV  137 (394)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred             CHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHH
Confidence            467889999999999999999999999999999999999999999988888776543    3345778888888888888


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      ++.++.          .+++|++|.+.|++..+.+++++++++++ +|+++++|.+.+...+-       .-+.   ..+
T Consensus       138 ~~~i~~----------~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~-------~Pl~---~Ga  197 (394)
T d1e5ea_         138 KKHMKP----------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-------NPVD---FGV  197 (394)
T ss_dssp             HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-------CGGG---GTC
T ss_pred             HHhhcc----------cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccC-------Cchh---cCC
Confidence            877643          37899999999999999999999987665 68999999997543221       1111   234


Q ss_pred             eEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567          308 DIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG  383 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~  383 (483)
                      ||++.|.+|.+++    .||.++++++.....+........++.+.|..+...+..|+-+   +.++++..+|+..+.+.
T Consensus       198 DiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL---~lRm~r~~~nA~~lA~~  274 (394)
T d1e5ea_         198 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL---NIRMKAESENAMKVAEY  274 (394)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred             CEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH---HHHHHHHHHHHHHHHHH
Confidence            9999999999973    4688888888887766543333456678899888887777665   34788889999999999


Q ss_pred             hccCCCc
Q 011567          384 LSDIHGL  390 (483)
Q Consensus       384 L~~~~~~  390 (483)
                      |++.+.+
T Consensus       275 L~~hp~V  281 (394)
T d1e5ea_         275 LKSHPAV  281 (394)
T ss_dssp             HHTCTTE
T ss_pred             HhhcCCc
Confidence            9887765

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.7e-18  Score=171.09  Aligned_cols=322  Identities=15%  Similarity=0.098  Sum_probs=194.3

Q ss_pred             EEEeecCCCC---CCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEE--Eec
Q 011567          111 VVNFASANYL---GLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSI--LYS  176 (483)
Q Consensus       111 ~id~~s~~~l---G~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i--~~~  176 (483)
                      .||++-+.|.   |.. ..|.|++|..+.+++-..+..+  ...|.    .+|++.+++++    +    .+..+  ..+
T Consensus        28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~--p~~G~----~~lR~aia~~~~~~~~~~~~~~~~~~~~~~  101 (396)
T d2q7wa1          28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYL--GIDGI----PEFGRCTQELLFGKGSALINDKRARTAQTP  101 (396)
T ss_dssp             CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCC--CTTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred             cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCC--CCcCC----HHHHHHHHHHHHhhcCCcccccceeeeccc
Confidence            4788877332   321 3477888888777763332111  13344    45556666554    3    12222  233


Q ss_pred             ccHHH--HHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccE
Q 011567          177 YGLST--MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRR  247 (483)
Q Consensus       177 sG~~a--~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~  247 (483)
                      +|..+  +..++.+..++||.|+++++++..+...+...|.+++.++..       +..++++...+...       +++
T Consensus       102 ~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  174 (396)
T d2q7wa1         102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA-------GDV  174 (396)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT-------TCE
T ss_pred             hHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhcc-------CcE
Confidence            33333  334455667899999999999999999999999998877642       33444444433322       477


Q ss_pred             EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-c-ccCCCCCceeEEEccccccccCCC
Q 011567          248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-E-HCGVPVDKIDIVTAAMGHALATEG  322 (483)
Q Consensus       248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~-~~~v~~~~~Di~~~s~~K~lg~~G  322 (483)
                      ++++...+|++|.+.+   +++|+++|++|++++|.||+|+...++....... . ..+.  .+..+++.|++|.++..|
T Consensus       175 ~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--~~~~~~~~s~sk~~~~~G  252 (396)
T d2q7wa1         175 VLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM--HKELIVASSYSKNFGLYN  252 (396)
T ss_dssp             EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH--CSCEEEEEECTTTTTCGG
T ss_pred             EEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhh--cccccccccccccccccC
Confidence            8888888999999998   7899999999999999999998765542111111 1 1111  122566779999997666


Q ss_pred             ---ceeeccHHHHHHHHhcC------CceeecCCCcHHHHHHHHHHHH-------HHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567          323 ---GFCTGSARVVDHQRLSS------SGYVFSASLPPYLASAAITAID-------VLEENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       323 ---G~i~~~~~~~~~~~~~~------~~~~fs~~~~p~~~aaa~~al~-------~l~~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                         ||++++...++......      ....+++ .+...+.++.+.+.       ..+...+.+++++++++.+.+.|++
T Consensus       253 ~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  331 (396)
T d2q7wa1         253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSN-PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE  331 (396)
T ss_dssp             GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSS-CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred             CCccccccchhHHHHHHHhhhhhhhhhhccccC-CCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               99888766554432211      0111222 23333333322221       1111234566777888888888877


Q ss_pred             CC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          387 IH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       387 ~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      +.   .+....++.+.+.++.+.        .     +.++++++++||++.++             -||+++. +++++
T Consensus       332 ~~~~~~~~~~~~~~G~F~~~~l~--------~-----e~~~~L~~e~gV~~~~g-------------~Ri~~a~-l~~~~  384 (396)
T d2q7wa1         332 KGANRDFSFIIKQNGMFSFSGLT--------K-----EQVLRLREEFGVYAVAS-------------GRVNVAG-MTPDN  384 (396)
T ss_dssp             TTCCSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHHHCEECCTT-------------CEEEGGG-CCTTT
T ss_pred             hCCCCCcceecCCCeEEEeeCCC--------H-----HHHHHHHHhCCEEECCC-------------CEEEecC-CCHHH
Confidence            62   123333445656554431        1     34667777789987532             3898853 67889


Q ss_pred             HHHHHHHHHHHH
Q 011567          464 LVKACESLKRIS  475 (483)
Q Consensus       464 i~~~~~~l~~~~  475 (483)
                      |++++++|++++
T Consensus       385 i~~~~~ai~~v~  396 (396)
T d2q7wa1         385 MAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999888763

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.77  E-value=1.8e-17  Score=165.98  Aligned_cols=257  Identities=9%  Similarity=0.076  Sum_probs=161.1

Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEE-ecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY-FKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN  257 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~-~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~  257 (483)
                      +.++..+||.|+++++++..+...+...|.+.+. .+.       .|++.+++.+.....       +++++++.+.+|+
T Consensus       123 ~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~il~~~P~NP  195 (412)
T d1ajsa_         123 YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE-------FSIFVLHACAHNP  195 (412)
T ss_dssp             SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT-------TCEEEEESSSCTT
T ss_pred             hhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccC-------CcEEEEecCCCCC
Confidence            4455789999999999999999999999876443 222       145555555554433       3778888889999


Q ss_pred             CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567          258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR  330 (483)
Q Consensus       258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~  330 (483)
                      +|.+.+   +++|+++|++||+++|.||+|....++.... ...........+..+++.|++|.++..|   ||+++...
T Consensus       196 TG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~  275 (412)
T d1ajsa_         196 TGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK  275 (412)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchh
Confidence            999998   8999999999999999999998755542100 0100000111223677789999998666   88776644


Q ss_pred             HHHHH-------HhcCCceeecCCCcHHHHHHHHHHHH------HHh-cCcHHHHHHHHHHHHHHHhhccCCC---ceee
Q 011567          331 VVDHQ-------RLSSSGYVFSASLPPYLASAAITAID------VLE-ENPDLITKLKKNTAILRTGLSDIHG---LSIA  393 (483)
Q Consensus       331 ~~~~~-------~~~~~~~~fs~~~~p~~~aaa~~al~------~l~-~~~~~~~~l~~~~~~l~~~L~~~~~---~~i~  393 (483)
                      ..+..       ...... .++. .+.....++.+.+.      .+. +....+++++++++.+.+.|+++..   +...
T Consensus       276 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i  353 (412)
T d1ajsa_         276 EPDSILRVLSQMQKIVRV-TWSN-PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHI  353 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHT-TTSS-CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHhhc-cccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeee
Confidence            33222       111101 1111 22333333322221      111 1234677788888888888887621   2222


Q ss_pred             cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567          394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR  473 (483)
Q Consensus       394 ~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~  473 (483)
                      ....+.+.++.+.        +     +.+.++++++||++.+             |.||++.. .++++|++++++|++
T Consensus       354 ~~~~G~F~~~~ls--------~-----~~v~~L~~e~gV~~vp-------------g~Ri~~ag-~~~~~i~~~a~aI~~  406 (412)
T d1ajsa_         354 TDQIGMFSFTGLN--------P-----KQVEYLINQKHIYLLP-------------SGRINMCG-LTTKNLDYVATSIHE  406 (412)
T ss_dssp             HHCCSSEEECCCC--------H-----HHHHHHHHTTCEECCT-------------TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred             cCCCeEEEecCCC--------H-----HHHHHHHHhCCEEEeC-------------CCeEEecc-CCHHHHHHHHHHHHH
Confidence            2334544443321        1     2355677888998754             35898753 678899999999999


Q ss_pred             HHHHH
Q 011567          474 ISAVV  478 (483)
Q Consensus       474 ~~~~~  478 (483)
                      +++++
T Consensus       407 av~~~  411 (412)
T d1ajsa_         407 AVTKI  411 (412)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=3.4e-18  Score=170.24  Aligned_cols=325  Identities=10%  Similarity=0.036  Sum_probs=193.7

Q ss_pred             EEeecCCCC---CCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHH--H
Q 011567          112 VNFASANYL---GLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLST--M  182 (483)
Q Consensus       112 id~~s~~~l---G~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a--~  182 (483)
                      ||++-+.|.   |.. ..|.|.+|.++.++.......+|  ..|..++.+.+.+.+.+.-+.   .+.++.++|+.+  +
T Consensus        29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p--~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (394)
T d2ay1a_          29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAG--LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQ  106 (394)
T ss_dssp             EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC--SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHH
T ss_pred             EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhccccccccccceeccCchHHHHH
Confidence            677666332   221 34788888888777633221111  334444444444443333332   345566666544  4


Q ss_pred             HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567          183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY  255 (483)
Q Consensus       183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~  255 (483)
                      ...+..+.++||.|+++.+++..+...++..|.+++.++..       +.+++++.+.....       +++++++...+
T Consensus       107 ~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~p~  179 (394)
T d2ay1a_         107 ALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-------GDMVLLHGCCH  179 (394)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT-------TCEEEEESSSC
T ss_pred             HHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhccc-------CcEEEEeCCCC
Confidence            45556778999999999999999999999999988877642       34555555544333       37788888899


Q ss_pred             CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567          256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS  328 (483)
Q Consensus       256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~  328 (483)
                      |++|...+   +++|+++|++|++++|.||+|....++....- ........ ...-+++.|++|.++..|   |++.+.
T Consensus       180 NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~sk~~~~~G~R~G~~~~~  258 (394)
T d2ay1a_         180 NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR-IPEVLIAASCSKNFGIYRERTGCLLAL  258 (394)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH-CSSEEEEEECTTTTTCGGGCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhh-cccccccccccccccCCcccccchhhc
Confidence            99999998   79999999999999999999987655421110 11111001 111455678999997554   887766


Q ss_pred             HHHHHHHHhcC------CceeecCCCcHHHHHHHHHHHH--H----H-hcCcHHHHHHHHHHHHHHHhhccCC---Ccee
Q 011567          329 ARVVDHQRLSS------SGYVFSASLPPYLASAAITAID--V----L-EENPDLITKLKKNTAILRTGLSDIH---GLSI  392 (483)
Q Consensus       329 ~~~~~~~~~~~------~~~~fs~~~~p~~~aaa~~al~--~----l-~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i  392 (483)
                      ....+......      ....++.. +...++.+...+.  .    + +....+++++.++++.+.+.|+++.   .+..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~  337 (394)
T d2ay1a_         259 CADAATRELAQGAMAFLNRQTYSFP-PFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGF  337 (394)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTSSC-CCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTH
T ss_pred             hhHHHHHHHhhhhhHhhhcccccch-hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee
Confidence            55443321100      00011111 2222222222221  1    1 1112456677777888888887642   1333


Q ss_pred             ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567          393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK  472 (483)
Q Consensus       393 ~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~  472 (483)
                      ..+..+.+.++.+.             .+.++++++++||++.+             +.||+++ .+++++|++++++|.
T Consensus       338 ~~~~~G~F~~~~ls-------------~~~~~~L~~~~~V~~~~-------------g~Ri~~a-~l~~~~i~~l~~ai~  390 (394)
T d2ay1a_         338 VAEHRGMFSRLGAT-------------PEQVKRIKEEFGIYMVG-------------DSRINIA-GLNDNTIPILARAII  390 (394)
T ss_dssp             HHHCCSSEEECCCC-------------HHHHHHHHHHHCEECCT-------------TCEEEGG-GCCTTTHHHHHHHHH
T ss_pred             ECCCceeEEecCcC-------------HHHHHHHHHhCCEEecC-------------CCEEEec-CCCHHHHHHHHHHHH
Confidence            33345555554431             13456777778998753             4799985 478899999999888


Q ss_pred             HH
Q 011567          473 RI  474 (483)
Q Consensus       473 ~~  474 (483)
                      ++
T Consensus       391 ~v  392 (394)
T d2ay1a_         391 EV  392 (394)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2e-18  Score=172.07  Aligned_cols=320  Identities=13%  Similarity=0.093  Sum_probs=189.4

Q ss_pred             EEeecCCCC---CCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------CCEEEecccH
Q 011567          112 VNFASANYL---GLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------PDSILYSYGL  179 (483)
Q Consensus       112 id~~s~~~l---G~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------e~~i~~~sG~  179 (483)
                      ||++-+.|.   |... .|.|++|.. .+.....+..    .|+...-..+|++.+++++..        +..+...++.
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~-~l~~~~~~~~----~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~  103 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEA-RLNAQPHGAS----LYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG  103 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHH-HHTTSCCSSB----CCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHH-HHHhCcccCC----CCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCch
Confidence            788876333   3222 244555433 3332211111    233333346677777777532        2333333332


Q ss_pred             H----HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567          180 S----TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRY  248 (483)
Q Consensus       180 ~----a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~  248 (483)
                      .    ++..++.++..+||.|+++++++..+...++..|.+++.++..       |.+++.+.+...       +.+.++
T Consensus       104 ~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  176 (397)
T d3tata_         104 GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL-------PARSIV  176 (397)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC-------CSSCCC
T ss_pred             hHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc-------ccccEE
Confidence            2    3445567778999999999999999999999999999888753       233333333322       224678


Q ss_pred             EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc--cccCCCCCceeEEEccccccccCCC-
Q 011567          249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT--EHCGVPVDKIDIVTAAMGHALATEG-  322 (483)
Q Consensus       249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~--~~~~v~~~~~Di~~~s~~K~lg~~G-  322 (483)
                      +++...+|++|...+   +++|+++|++|++++|.||+|+..+++.......  ...+.  .+.-+++.|+||.++..| 
T Consensus       177 ~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~G~  254 (397)
T d3tata_         177 LLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA--GLPALVSNSFSKIFSLYGE  254 (397)
T ss_dssp             EECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTT--TCCCEECBCCHHHHTBTTT
T ss_pred             EEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhc--CCceEEEecCcccccccCc
Confidence            888889999999988   7899999999999999999998766542111111  11111  122477899999998766 


Q ss_pred             --ceeeccHHHHHH-------HHhcCCceeecCCCcHHHHHHHHHHHH---HHh----cCcHHHHHHHHHHHHHHHhhcc
Q 011567          323 --GFCTGSARVVDH-------QRLSSSGYVFSASLPPYLASAAITAID---VLE----ENPDLITKLKKNTAILRTGLSD  386 (483)
Q Consensus       323 --G~i~~~~~~~~~-------~~~~~~~~~fs~~~~p~~~aaa~~al~---~l~----~~~~~~~~l~~~~~~l~~~L~~  386 (483)
                        ||+++....++.       ....... .++.+ +....+++...+.   ...    .....+++++++.+.+.+.|..
T Consensus       255 RiG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  332 (397)
T d3tata_         255 RVGGLSVMCEDAEAAGRVLGQLKATVRR-NYSSP-PNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST  332 (397)
T ss_dssp             CCBCCEEECSSTTHHHHHHHHHHHHTTT-TTSSC-CSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             cccccccchhHHHHHHHHHHHHHHHhhc-ccccc-cHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              888765433322       2222222 22222 2222222222221   111    1123456666667777777765


Q ss_pred             CC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567          387 IH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD  463 (483)
Q Consensus       387 ~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed  463 (483)
                      ..   ++....+..+.+.++.+.        .     +.+++++++.||++.+             +.||+++. +++++
T Consensus       333 ~~~~~~~~~~~~~~G~F~~~~ls--------~-----e~~~~L~~e~~V~l~~-------------g~Ri~~a~-~~~~~  385 (397)
T d3tata_         333 EMPERNFDYLLNQRGMFSYTGLS--------A-----AQVDRLREEFGVYLIA-------------SGRMCVAG-LNTAN  385 (397)
T ss_dssp             TCTTSCTTHHHHCCSSBCCCCCC--------H-----HHHHHHTTTTCEECCS-------------SSCCBTTS-CCTTT
T ss_pred             hCCCCceEEEcCCCceEEecCcC--------H-----HHHHHHHHhCCEEeCC-------------CCEEEecc-CCHHH
Confidence            42   133333445555554431        1     3466777888997754             36888754 78899


Q ss_pred             HHHHHHHHHHH
Q 011567          464 LVKACESLKRI  474 (483)
Q Consensus       464 i~~~~~~l~~~  474 (483)
                      |++++++|+++
T Consensus       386 i~~~~~ai~~v  396 (397)
T d3tata_         386 VQRVAKAFAAV  396 (397)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988876

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.76  E-value=4.4e-17  Score=163.00  Aligned_cols=255  Identities=9%  Similarity=0.065  Sum_probs=165.4

Q ss_pred             hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567          186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS  258 (483)
Q Consensus       186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~  258 (483)
                      +.....+||.|+++++++......+...|.+++.++..       |.+.++..+.....       .++++++...+|++
T Consensus       117 ~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~i~~P~NPT  189 (412)
T d1yaaa_         117 FFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE-------GSIFVLHSCAHNPT  189 (412)
T ss_dssp             HHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT-------TCEEEEECSSCTTT
T ss_pred             HHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCC-------ceEEEEecCCCCCc
Confidence            45567899999999999999999999999988877642       55566666655332       47788888899999


Q ss_pred             CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC-cc-----ccccCCCCCceeEEEccccccccCCC---ceee
Q 011567          259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GL-----TEHCGVPVDKIDIVTAAMGHALATEG---GFCT  326 (483)
Q Consensus       259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~-----~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~  326 (483)
                      |.+.+   +++|+++|++|++++|.||+|....++.... ..     .+..+.  .+.-+++.|+||.++..|   ||++
T Consensus       190 G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~G~RiG~~~  267 (412)
T d1yaaa_         190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST--VSPVFVCQSFAKNAGMYGERVGCFH  267 (412)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT--TCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             cccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc--CCCeEEEEecCCccccCcCceEEEE
Confidence            99998   8999999999999999999998765542110 00     111121  223577889999998777   9988


Q ss_pred             ccHHHHHHH-------HhcC---CceeecCCCcHHHHHHHHHHHHH------H-hcCcHHHHHHHHHHHHHHHhhccCCC
Q 011567          327 GSARVVDHQ-------RLSS---SGYVFSASLPPYLASAAITAIDV------L-EENPDLITKLKKNTAILRTGLSDIHG  389 (483)
Q Consensus       327 ~~~~~~~~~-------~~~~---~~~~fs~~~~p~~~aaa~~al~~------l-~~~~~~~~~l~~~~~~l~~~L~~~~~  389 (483)
                      ++.++++..       ....   ....++ +.+...+.++...+..      . +....+++.++++++.+.+.|+++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  346 (412)
T d1yaaa_         268 LALTKQAQNKTIKPAVTSQLAKIIRSEVS-NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT  346 (412)
T ss_dssp             EECCSCTTHHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EchhhhhhHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            765432211       1000   011122 2244444444433321      1 11234667778888888888876511


Q ss_pred             ---ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567          390 ---LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK  466 (483)
Q Consensus       390 ---~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~  466 (483)
                         +....+..+.+.++.+         +.    ++++++++++||++.+             +.||+++. .+++.|+.
T Consensus       347 ~~~~~~~~~~gG~F~~~~l---------s~----e~~~~L~~e~~V~~~~-------------g~Ris~~g-~~~~~i~~  399 (412)
T d1yaaa_         347 PGNWDHIVNQCGMFSFTGL---------TP----QMVKRLEETHAVYLVA-------------SGRASIAG-LNQGNVEY  399 (412)
T ss_dssp             SSCCTHHHHCCSSEEECCC---------CH----HHHHHHHHHHCEECCT-------------TSEEEGGG-CCTTTHHH
T ss_pred             CCCCceeCCCceEEEecCc---------CH----HHHHHHHHhCCEEECC-------------CCEEEecc-CCHHHHHH
Confidence               3323333454444332         11    3466677888997753             46998854 67789999


Q ss_pred             HHHHHHHHHHH
Q 011567          467 ACESLKRISAV  477 (483)
Q Consensus       467 ~~~~l~~~~~~  477 (483)
                      ++++|+++++.
T Consensus       400 l~~ai~~v~k~  410 (412)
T d1yaaa_         400 VAKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.76  E-value=3.2e-16  Score=155.21  Aligned_cols=295  Identities=13%  Similarity=0.108  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHhhhCCC--CEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH--hhhcCCeEEEecCC-----
Q 011567          154 DVHLDCEARIAKFLGTP--DSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG--LYLSRSTVVYFKHN-----  223 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e--~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g--~~~s~~~v~~~~~~-----  223 (483)
                      ++..++++.|+++++.+  +++++ +||+.++.+++..+..+++.+++....|++....  ....+.....+...     
T Consensus        50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (388)
T d2ch1a1          50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhhccccccccccccccc
Confidence            57789999999999975  46666 5778999999999999998887766666654432  23334444333322     


Q ss_pred             CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567          224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP  303 (483)
Q Consensus       224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~  303 (483)
                      +.+..+......         .++++.+..+.+.+|.+.|++++.++|+++|+++++|.++++|...         .+++
T Consensus       130 ~~~~~~~~~~~~---------~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~p---------id~~  191 (388)
T d2ch1a1         130 SLETLARAIELH---------QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP---------FYMD  191 (388)
T ss_dssp             CHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------CCTT
T ss_pred             chhhhhhhhccC---------Ccceeeeeecccccccccchhhhcchhccccceeeeeeeecccccc---------cchh
Confidence            334444433222         3567888888888999999999999999999999999999976432         3454


Q ss_pred             CCceeEEEccccccccCCC--ceeeccHHHHHHHHhcCCc---------------------eeecCCCcHHHHHHHHHHH
Q 011567          304 VDKIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSSSG---------------------YVFSASLPPYLASAAITAI  360 (483)
Q Consensus       304 ~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~~~---------------------~~fs~~~~p~~~aaa~~al  360 (483)
                      ..++|++++|-.|++++++  |++..++...+.......+                     ..+....+.....++.+++
T Consensus       192 ~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l  271 (388)
T d2ch1a1         192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL  271 (388)
T ss_dssp             TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred             ccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHH
Confidence            4567999999999997443  6677777666644322111                     0122234555556666677


Q ss_pred             HHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC--CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEE
Q 011567          361 DVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN--PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV  435 (483)
Q Consensus       361 ~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~  435 (483)
                      +.+...  .....+.++.....+..+..........+  ..++ ++.+.+++..     +   ..++...+++++||.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~-----~---~~~l~~~l~~~~gI~v~  343 (388)
T d2ch1a1         272 AQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV-----D---WWKVSQYAMNNFSLEVQ  343 (388)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCBCCB
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCC-----C---HHHHHHHHhhcCCEEEe
Confidence            665432  23344444444445555544322212211  2343 6677774321     1   22566666676789887


Q ss_pred             eecccccccCCCCCceEEE-ccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          436 TSKRSMLDKCRLPVGIRLF-VSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       436 ~~~~~~~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      .+..+..     ...+||+ +....|+|||++++++|++++++..
T Consensus       344 ~G~~~~~-----~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         344 GGLGPTF-----GKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             CCCGGGT-----TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcccc-----CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            6543211     1248998 6677799999999999999998853

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.3e-17  Score=160.64  Aligned_cols=292  Identities=13%  Similarity=0.112  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHhhhCC----C-CEEEe-cccHHHHHhhhhhhc---cCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC
Q 011567          154 DVHLDCEARIAKFLGT----P-DSILY-SYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH  222 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~----e-~~i~~-~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~  222 (483)
                      +...++.+.+.++++.    + +.+++ ++|++++..++..+.   ++||.|++....|++..  ......+..+.....
T Consensus        36 ~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (382)
T d2bkwa1          36 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP  115 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccc
Confidence            3455666777777653    2 34444 888999999998875   57887776665555432  233444555544432


Q ss_pred             ------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCC
Q 011567          223 ------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGR  294 (483)
Q Consensus       223 ------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~  294 (483)
                            .+.+.+++.+.+.         +++++.+..+.+.+|...|++++.++|++++  +++++|.++++|.+.    
T Consensus       116 ~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~p----  182 (382)
T d2bkwa1         116 LKIGESVPLELITEKLSQN---------SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE----  182 (382)
T ss_dssp             SSTTSCCCHHHHHHHHHHS---------CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC----
T ss_pred             cCCCCccchhHHHHHhhhc---------cchheeeeeccccccccccchhhhhhccccccceeeeeeccccccccc----
Confidence                  1455666655442         2568888888888999999999999998875  999999999987543    


Q ss_pred             ccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhc-------------------------CCceeecCC
Q 011567          295 GLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLS-------------------------SSGYVFSAS  347 (483)
Q Consensus       295 g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~-------------------------~~~~~fs~~  347 (483)
                           .++...++|++++|.+|++ |+.| |+++.+++..+.....                         ..+. +..+
T Consensus       183 -----id~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T  256 (382)
T d2bkwa1         183 -----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGA-YFAT  256 (382)
T ss_dssp             -----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCC-CSSC
T ss_pred             -----ccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccc-cccC
Confidence                 4555457899999999999 5666 8888888776543211                         0011 1223


Q ss_pred             CcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeec----CCCC-CEEEEEecCCCCCchhhHHHHH
Q 011567          348 LPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIAS----NPES-PIVFLILEKSTGSMKNDLQLLE  420 (483)
Q Consensus       348 ~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~----~~~~-~i~~l~l~~~~~~~~~~~~~~~  420 (483)
                      .+.....+..++|+.+.++  +...++.+++.+++++.+.+..+.....    ...+ .++.+.+.+           ..
T Consensus       257 p~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~-----------~~  325 (382)
T d2bkwa1         257 PPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD-----------PP  325 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC-----------HH
T ss_pred             CcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC-----------HH
Confidence            4555666777889887643  4566777788888998887654444322    1122 244555531           11


Q ss_pred             HHHHHHHHhCCEEEEeecccccccCCCCCceEEE-ccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567          421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF-VSAAHSEADLVKACESLKRISAVVLRD  481 (483)
Q Consensus       421 ~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~~~~~~  481 (483)
                      ++.+ .|+++||.+..+....+.    ...+||+ +....+++|+++++++|+. +.+.|++
T Consensus       326 ~~~~-~L~~~gi~i~~G~~~~~~----~~~~Ri~~~G~~~~~e~i~~l~~~l~~-i~~~L~~  381 (382)
T d2bkwa1         326 DVIA-FLKSHGVVIAGGIHKDIG----PKYIRIGHMGVTACNKNLPYMKNCFDL-IKLALQR  381 (382)
T ss_dssp             HHHH-HHHHTTEECBCCCCTTTG----GGEEEECCCGGGTSSTTCTHHHHHHHH-HHHHTTC
T ss_pred             HHHH-HHHHCCeEEECCCChhhc----CCEEEEeCCcCCCCHHHHHHHHHHHHH-HHHHHCc
Confidence            3444 467789999865332221    1239998 6666778889998888864 4444443

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.6e-16  Score=154.88  Aligned_cols=291  Identities=14%  Similarity=0.123  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHhhhCCCC-EEEe-cccHHHHHhhhhhhccCCcEEE-EcCCchhH-HHhHhhhcCCeEEEecC--CCHHH
Q 011567          154 DVHLDCEARIAKFLGTPD-SILY-SYGLSTMFSAIPCFCKKGDLIV-ADEGVHWG-IQNGLYLSRSTVVYFKH--NDMDS  227 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~-~i~~-~sG~~a~~~ai~~~~~~gdiI~-~~~~~h~s-~~~g~~~s~~~v~~~~~--~d~~~  227 (483)
                      ++..+.++.|.++++.+. .+++ +||+.++++++..+.++||.++ +....++. ....++..+..+...+.  .+..+
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~  112 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPR  112 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhcCcccccccccCCCccc
Confidence            567889999999999764 4444 8888999999999888888544 44443332 22334445555544433  22212


Q ss_pred             HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCCCCC
Q 011567          228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      ++..    ..      .....|++.+.-+.+|.+.|+++|.++|++|+  .++++|.++++|...         +.++..
T Consensus       113 ~~~~----~~------~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~---------i~~d~~  173 (348)
T d1iuga_         113 PEDV----AK------EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGE---------VALEAM  173 (348)
T ss_dssp             TTTS----CC------SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBC---------CCSGGG
T ss_pred             cccc----cc------cCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccc---------cccccc
Confidence            2111    11      12456666666677899999999999999984  899999999987542         334434


Q ss_pred             ceeEEEccccccc-cCCC-ceeeccHHHHHHHHhc-------------CCceeecCCCcHHHHHHHHHHHHHHhcC-cHH
Q 011567          306 KIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLS-------------SSGYVFSASLPPYLASAAITAIDVLEEN-PDL  369 (483)
Q Consensus       306 ~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~-------------~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~  369 (483)
                      ++|++++|-.|++ |++| |+++.+++.++..+..             ..+..+ .+.|.....+..++|+.+.+. .+.
T Consensus       174 ~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~-~Tp~v~~i~~l~~aL~~~~~~~~~~  252 (348)
T d1iuga_         174 GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESA-WTPAINLVLAVAAVLEEVLPRLEEH  252 (348)
T ss_dssp             TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCS-SCCCHHHHHHHHHHHHHHGGGHHHH
T ss_pred             cCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCccc-ccccchHHHHHHHHHHHHHHHHhHH
Confidence            5799999999999 6666 7888888776653221             111112 234555666777888877543 222


Q ss_pred             HHHHHHHHHHHHHhhccCCCceeecCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCC
Q 011567          370 ITKLKKNTAILRTGLSDIHGLSIASNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP  448 (483)
Q Consensus       370 ~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~  448 (483)
                      .++.+...+.++..+.. .|+...+...++ +..+.+++..     +   ..++.+. |+++|+.+..+..+.-     .
T Consensus       253 ~~~~~~~~~~~~~~~~~-~gl~~~~~~~s~~v~~~~~P~g~-----~---~~~~~~~-l~~~gi~i~~G~~~l~-----~  317 (348)
T d1iuga_         253 LALKAWQNALLYGVGEE-GGLRPVPKRFSPAVAAFYLPEGV-----P---YARVKEA-FAQRGAVIAGGQGPLK-----G  317 (348)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCEESCSSBCTTCEEEECCTTC-----C---HHHHHHH-HHTTTEECEECCGGGT-----T
T ss_pred             HHHHHHHHHHHhhhhhh-hhhccChhhcCCeEEEEECCCCC-----C---HHHHHHH-HHHCCeEEEcCccccC-----C
Confidence            22222233444444444 377776554455 5666664321     1   1245554 5677999876643221     1


Q ss_pred             CceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567          449 VGIRLFVSAAHSEADLVKACESLKRISAVVL  479 (483)
Q Consensus       449 ~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~  479 (483)
                      ..+||+.-...+++|+++++++|++++++++
T Consensus       318 ~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~~  348 (348)
T d1iuga_         318 KVFRLSLMGAYDRYEALGVAGMFREVLEEIL  348 (348)
T ss_dssp             TEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            2389987667999999999999999999874

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=4.8e-15  Score=145.83  Aligned_cols=213  Identities=17%  Similarity=0.155  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCH-HHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDM-DSL  228 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~-~~L  228 (483)
                      +....||++||++-|.+.++.|+||.+|+.+++.++.++||.|++....++.+..-    +...|..+..+...|. +..
T Consensus        58 PT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~  137 (421)
T d2ctza1          58 PTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEF  137 (421)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchh
Confidence            67899999999999999999999999999999999999999999988888766543    3455777777765443 333


Q ss_pred             HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccc-ccccCCCCccccccCCCCCce
Q 011567          229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSF-GVLGRSGRGLTEHCGVPVDKI  307 (483)
Q Consensus       229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~-g~lg~~G~g~~~~~~v~~~~~  307 (483)
                      +..++   +       ++++|++|.+.|++..+.|+++|+++|+++|+++++|.+.+. ..+       +.-+.   ..+
T Consensus       138 ~~~~~---~-------~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~-------~~Pl~---~Ga  197 (421)
T d2ctza1         138 LALTD---E-------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-------LRPLA---WGA  197 (421)
T ss_dssp             HHHCC---T-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-------CCGGG---GTC
T ss_pred             ccccC---C-------CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee-------ccccc---cCC
Confidence            33222   1       489999999999999999999999999999999999999752 211       11111   234


Q ss_pred             eEEEccccccccC----CCceeeccHHH-------------------------------HHHHHhcCCceeecCCCcHHH
Q 011567          308 DIVTAAMGHALAT----EGGFCTGSARV-------------------------------VDHQRLSSSGYVFSASLPPYL  352 (483)
Q Consensus       308 Di~~~s~~K~lg~----~GG~i~~~~~~-------------------------------~~~~~~~~~~~~fs~~~~p~~  352 (483)
                      ||++.|.+|.+++    .||.++.+++.                               +...+... .-.+++.++|..
T Consensus       198 DiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~sP~~  276 (421)
T d2ctza1         198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG-LRDQGQALGPFE  276 (421)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTH-HHHHCCCCCHHH
T ss_pred             cEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHH-HHhccCCCCHHH
Confidence            9999999999973    45777654321                               11111110 002455678998


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc
Q 011567          353 ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL  390 (483)
Q Consensus       353 ~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~  390 (483)
                      |-.++..|+-+   +-+.++..+++..+.+.|++.+.+
T Consensus       277 a~l~~rgl~TL---~lRm~~~~~nA~~vA~~L~~hp~V  311 (421)
T d2ctza1         277 AWVVLLGMETL---SLRAERHVENTLHLAHWLLEQPQV  311 (421)
T ss_dssp             HHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHHHhcCCcch---hhHHHHHHHHHHHHHhhhccCCCe
Confidence            88777777655   447888889999999999887654

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=7.7e-15  Score=143.56  Aligned_cols=206  Identities=11%  Similarity=0.079  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHHH
Q 011567          154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSLR  229 (483)
Q Consensus       154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~Le  229 (483)
                      +....||++|+++-|.+.+++|+||.+|+.+++ .+.++||.|++....++.+..-+.    ..|.++..++ .+.++++
T Consensus        55 PT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~-~~~~~~~  132 (393)
T d1n8pa_          55 PNRENLERAVAALENAQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN-DLLNDLP  132 (393)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-SHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-cchHHHH
Confidence            678899999999999999999999999986555 556778877777666666544333    3355555554 3445555


Q ss_pred             HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH----HcCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567          230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE----KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD  305 (483)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~----k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~  305 (483)
                      +.++.          ++++|++|.+.|++..+.++++|+++|+    ++|+++++|.+++...+-+       -+.   .
T Consensus       133 ~~i~~----------~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~-------Pl~---~  192 (393)
T d1n8pa_         133 QLIKE----------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISN-------PLN---F  192 (393)
T ss_dssp             HHSCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCC-------GGG---G
T ss_pred             HHhhh----------hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCC-------chh---h
Confidence            54432          4899999999999999999999999999    7789999999975432211       111   2


Q ss_pred             ceeEEEccccccccC----CCceee-ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567          306 KIDIVTAAMGHALAT----EGGFCT-GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL  380 (483)
Q Consensus       306 ~~Di~~~s~~K~lg~----~GG~i~-~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l  380 (483)
                      .+||++.|++|.+++    .||.++ .++++.+.++..  ...+++.++|..+..++..++-+   +.+.++..+++..+
T Consensus       193 GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~--~~~~G~~~~p~~a~ll~rgl~Tl---~lR~~~~~~nA~~l  267 (393)
T d1n8pa_         193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL--QNAIGAIPSPFDAWLTHRGLKTL---HLRVRQAALSANKI  267 (393)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHH
T ss_pred             CCCEEEEccccccCCCCccccceeeecchhHHHHHHHH--HhhcCCCCChHHHHHHHhCCcch---hhHHHHHHHHHHHH
Confidence            349999999999973    457765 556666665433  22345567898887777776655   34788888889889


Q ss_pred             HHhhcc
Q 011567          381 RTGLSD  386 (483)
Q Consensus       381 ~~~L~~  386 (483)
                      .+.|+.
T Consensus       268 A~~L~~  273 (393)
T d1n8pa_         268 AEFLAA  273 (393)
T ss_dssp             HHHHTS
T ss_pred             HHHHHh
Confidence            999865

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.64  E-value=2.2e-15  Score=150.11  Aligned_cols=277  Identities=11%  Similarity=0.058  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHhhh---C---CC-CEEEeccc-HHHHHhhhhhh--------ccCCcEEEEcCCchhHHHhHhhhcCCeEE
Q 011567          155 VHLDCEARIAKFL---G---TP-DSILYSYG-LSTMFSAIPCF--------CKKGDLIVADEGVHWGIQNGLYLSRSTVV  218 (483)
Q Consensus       155 ~~~~l~~~La~~~---g---~e-~~i~~~sG-~~a~~~ai~~~--------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~  218 (483)
                      +..+|++.|++++   |   ++ +-|++++| ++++.+++.++        ..++|.|++..+++..+....++.+.+..
T Consensus       101 ~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~  180 (425)
T d2hoxa1         101 ISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY  180 (425)
T ss_dssp             CCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE
T ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCC
Confidence            3467888888875   3   23 45767555 58888888888        46889999999999998888888777766


Q ss_pred             EecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCcccc
Q 011567          219 YFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTE  298 (483)
Q Consensus       219 ~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~  298 (483)
                      .|+. |.+.+++.+.   .       +++++++..++|++|.+..       +-.+++.+|.||+|-.-.+    ..+. 
T Consensus       181 ~~~~-D~~~~~~~~~---~-------~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f----~~~~-  237 (425)
T d2hoxa1         181 VWAG-NAANYVNVSN---P-------EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY----TPIK-  237 (425)
T ss_dssp             EEEE-EGGGGTTCSC---G-------GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT----SCCC-
T ss_pred             ccCC-CHHHHHhhCC---C-------CceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc----cchh-
Confidence            6654 4555543221   1       3678888888899998642       2235899999999842111    1111 


Q ss_pred             ccCCCCCceeEEEccccccccCCC---ceee-ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--------cC
Q 011567          299 HCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--------EN  366 (483)
Q Consensus       299 ~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--------~~  366 (483)
                        .  +.+.+|++.|+||++|..|   ||++ .++.+++.+.......+.  +.+.....++.++++...        ..
T Consensus       238 --~--~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~--~vs~~~Q~aa~~aL~~~~~~~~~~~~~~  311 (425)
T d2hoxa1         238 --Y--KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTE--GTPRETQLRSLKVLKEVVAMVKTQKGTM  311 (425)
T ss_dssp             --S--CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             --h--hcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcc--cCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence              1  2334899999999999777   9965 456666655432211112  224444445555554321        11


Q ss_pred             ----cHHHHHHHHHHHHHHHhhccCCCceee--------------cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567          367 ----PDLITKLKKNTAILRTGLSDIHGLSIA--------------SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK  428 (483)
Q Consensus       367 ----~~~~~~l~~~~~~l~~~L~~~~~~~i~--------------~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~  428 (483)
                          ...++.++++.+.+++.|.+...+.+.              ..+...+.++.....     .+     +.+.++|+
T Consensus       312 ~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~-----~~-----~~~~~lL~  381 (425)
T d2hoxa1         312 RDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-----ED-----KDCYQTFQ  381 (425)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-----GG-----CSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC-----hH-----HHHHHHHH
Confidence                234677788888888888775433221              122344556655321     11     12344677


Q ss_pred             hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567          429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA  476 (483)
Q Consensus       429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~  476 (483)
                      ++||.+.++.....+    +.-+||++.  .++|++++++++|+++++
T Consensus       382 e~gI~v~pGs~FG~~----~~yvRisl~--~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         382 NGRINTQNGVGFEAS----SRYVRLSLI--KTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HTTEECEEGGGGTSC----TTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred             hCCEEEEechhcCCC----CCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            789999987654321    234999874  588999999999998874

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.56  E-value=3.1e-14  Score=139.35  Aligned_cols=309  Identities=14%  Similarity=0.138  Sum_probs=169.6

Q ss_pred             ChHHHHHHHHHHHhcCC-CCCC----CCCcccChHHHHHHHHHHHhhhCCCC--EEEe-ccc-HHHHHhhhhhhccCCcE
Q 011567          125 HEKLLESCTSALEKYGV-GSCG----PRGFYGTIDVHLDCEARIAKFLGTPD--SILY-SYG-LSTMFSAIPCFCKKGDL  195 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~-g~~~----~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~-~sG-~~a~~~ai~~~~~~gdi  195 (483)
                      +++|.+++.+.+..|+. +++.    .|. .-..+...+.++.|+++++.++  .+++ +++ +.++++++..+.++++.
T Consensus        15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs-~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~   93 (361)
T d2c0ra1          15 PLEVLERAQAEFVDYQHTGMSIMEMSHRG-AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQT   93 (361)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTS-HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCc
Confidence            47888888887766532 2211    111 0013577899999999999864  3444 433 45556666777788887


Q ss_pred             EEEcCCchhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567          196 IVADEGVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI  268 (483)
Q Consensus       196 I~~~~~~h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~  268 (483)
                      ++.-...++.  ........+..+...+..     +.+.+++.+..           ..++.++   +.+|.+.|++++.
T Consensus        94 ~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~---~~tg~~~~~~~i~  159 (361)
T d2c0ra1          94 ANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQ-----------DNAAYLH---LTSNETIEGAQFK  159 (361)
T ss_dssp             EEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCC-----------TTEEEEE---EESEETTTTEECS
T ss_pred             eEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhccc-----------CcceEEE---EecccceecceEE
Confidence            6544333332  233444556666554432     33333322211           1223332   3458888999999


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCc--eeeccHHHHHH------------
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGG--FCTGSARVVDH------------  334 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG--~i~~~~~~~~~------------  334 (483)
                      ++|++||+++++|.++++|..           .++.++.|+.+.|.+|.+++.||  +++..+...+.            
T Consensus       160 ~~~~~~~al~~vDavss~g~~-----------~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (361)
T d2c0ra1         160 AFPDTGSVPLIGDMSSDILSR-----------PFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDT  228 (361)
T ss_dssp             SCCCCTTSCEEEECTTTTTSS-----------CCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHH
T ss_pred             EeeccCCceEEEEeecccccc-----------ccccccceeEEEecccccccccCcEEEEEhHHhhhCcccccccccccc
Confidence            999999999999999987632           22334456666688898885553  33322221111            


Q ss_pred             HHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCc-eee--cCCCCC-EEEEEecCC
Q 011567          335 QRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGL-SIA--SNPESP-IVFLILEKS  408 (483)
Q Consensus       335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~-~i~--~~~~~~-i~~l~l~~~  408 (483)
                      +.....  .+....++....+..+........  .....+.+.....+.......... ...  ....|+ ++.+.+.+ 
T Consensus       229 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~-  305 (361)
T d2c0ra1         229 YVKNNS--LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-  305 (361)
T ss_dssp             HHHTTT--CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-
T ss_pred             cccccc--ccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCC-
Confidence            111111  111222233222222222222222  234444444444454444433222 221  122344 45555531 


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                             .....++.+ .|+++||.+..+.. .+      +++||+....+|.|||++++++|++..++
T Consensus       306 -------~~~~~~~~~-~L~~~GI~~~~G~~-~~------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         306 -------EELEKEFVK-ASEQEGFVGLKGHR-SV------GGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             -------HHHHHHHHH-HHHHTTEESCBCCT-TT------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -------cccHHHHHH-HHHHCCCEEecCCC-cC------CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                   222345665 46778998766532 21      45999999999999999999999987654

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.53  E-value=5.2e-14  Score=137.42  Aligned_cols=328  Identities=13%  Similarity=0.038  Sum_probs=167.5

Q ss_pred             eeEEEeecCCCCCCC-CChHHHHHHHHHHHhcCC-CCCC----CCCcccChHHHHHHHHHHHhhhCCCC--EEEecccHH
Q 011567          109 KEVVNFASANYLGLI-GHEKLLESCTSALEKYGV-GSCG----PRGFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLS  180 (483)
Q Consensus       109 ~~~id~~s~~~lG~~-~~p~i~~a~~~~l~~~g~-g~~~----~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~  180 (483)
                      |++-||+.+    -. -+++|.+++.+++..|.. +.+.    .|.. --.+...+.++.|+++++.++  .+++++|+.
T Consensus         2 ~~~~nF~pG----P~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~-~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~   76 (360)
T d1w23a_           2 KQVFNFNAG----PSALPKPALERAQKELLNFNDTQMSVMELSHRSQ-SYEEVHEQAQNLLRELLQIPNDYQILFLQGGA   76 (360)
T ss_dssp             CCCEECCSS----SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH-HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHH
T ss_pred             CceeEeCCC----CcCCCHHHHHHHHHHHHhhcccCccccccCcCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            345566653    21 358999999988766532 1111    1100 013477889999999999753  566655543


Q ss_pred             -H-HHhhhhhhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC--CCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567          181 -T-MFSAIPCFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH--NDMDSLRNTLERVTADNKRAKKLRRYIVVEAV  254 (483)
Q Consensus       181 -a-~~~ai~~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~--~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v  254 (483)
                       + +.++.-.+.++++.+++-..-|++..  ..+...+........  .+...++.. +.       .......+.++  
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~--  146 (360)
T d1w23a_          77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDF-SE-------FQLNENDAYLH--  146 (360)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCG-GG-------CCCCTTEEEEE--
T ss_pred             HHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhh-hh-------cccccccceeE--
Confidence             3 33444455566666555433333322  233333333333222  121111111 11       01112233333  


Q ss_pred             cCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHH
Q 011567          255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDH  334 (483)
Q Consensus       255 ~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~  334 (483)
                       +.+|.+.|+++|.++|++||+++++|.++++|...         .+++..++|+..++-.|++++.+|+++.++...+.
T Consensus       147 -~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~---------id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~  216 (360)
T d1w23a_         147 -ITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRP---------LKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTK  216 (360)
T ss_dssp             -EESEETTTTEECSSCCCCCSSCEEEECTTTTTSSC---------CCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSC
T ss_pred             -ecCCccccceeeeeccccceeeEEeeccccccccc---------cccccccceEEeeccccccCCcceeeEechhhhcc
Confidence             34588889999999999999999999999976432         33433455666555455444444555443322111


Q ss_pred             HHhc----------CCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCc-eee--cCCCCC
Q 011567          335 QRLS----------SSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGL-SIA--SNPESP  399 (483)
Q Consensus       335 ~~~~----------~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~-~i~--~~~~~~  399 (483)
                      ....          ..........++...+............  ....++.+.+.............. ...  ...+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~  296 (360)
T d1w23a_         217 VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSL  296 (360)
T ss_dssp             CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCS
T ss_pred             cccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcce
Confidence            0000          0000111112222222222222222221  122333333333333333332222 221  122344


Q ss_pred             -EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          400 -IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       400 -i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                       ++.+.+++        .....++... |.++||.+..+.. .      -+++|+++...+|.||++++++.+++..+.
T Consensus       297 ~vvsf~i~~--------~~~~~~~~~~-l~~~GI~~~~G~~-~------~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         297 MNVTFNLRN--------EELNQQFLAK-AKEQGFVGLNGHR-S------VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SEEEEECSS--------HHHHHHHHHH-HHHTTEESCBCCT-T------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCC--------CccHHHHHHH-HHHCCCeeeeCCC-c------cCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence             67777642        2234456664 5667998765422 1      146999998888999999999999987653

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.3e-13  Score=132.40  Aligned_cols=313  Identities=11%  Similarity=0.043  Sum_probs=169.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCCC-----CCCcccChHHHHHHHHHHHhhhCCCC--EEEe-ccc-HHHHHhhhhhhccCCcE
Q 011567          125 HEKLLESCTSALEKYGVGSCG-----PRGFYGTIDVHLDCEARIAKFLGTPD--SILY-SYG-LSTMFSAIPCFCKKGDL  195 (483)
Q Consensus       125 ~p~i~~a~~~~l~~~g~g~~~-----~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~-~sG-~~a~~~ai~~~~~~gdi  195 (483)
                      +|+|.+|+.+.+..|.....+     .|.. --.++..+.++.|+++++.++  .+++ +++ +.++.+++..+.++++.
T Consensus        13 p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~-ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~   91 (360)
T d1bjna_          13 PAEVLKQAQQELRDWNGLGTSVMEVSHRGK-EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTT   91 (360)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSCGGGSCTTSH-HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCE
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccc
Confidence            589999999988776422111     1100 012467899999999999753  4554 333 34466666677788888


Q ss_pred             EEEcCCchhHHHhH--hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567          196 IVADEGVHWGIQNG--LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI  268 (483)
Q Consensus       196 I~~~~~~h~s~~~g--~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~  268 (483)
                      +++....++.....  .+..+..++.....     +.+.++..+.          ..++++.+....+.+|...|++++.
T Consensus        92 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~v~~~~~~t~~~~~~~~i~  161 (360)
T d1bjna_          92 ADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ----------LSDNAAYMHYCPNETIDGIAIDETP  161 (360)
T ss_dssp             EEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC----------CCSSCSCEEECSEETTTTEECCCCC
T ss_pred             cceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc----------cCCceeEEEecccccccCcccccee
Confidence            77766555443322  22223333332211     1112211111          1233333334455678877776653


Q ss_pred             HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHHH----------
Q 011567          269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQR----------  336 (483)
Q Consensus       269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~----------  336 (483)
                        |+.+++.+++|.+++++.           ..++.+++|+.+.|.+|.+++++  |+++.++...+...          
T Consensus       162 --~~~~~~~v~vDa~~~~~~-----------~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (360)
T d1bjna_         162 --DFGADVVVAADFSSTILS-----------RPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSI  228 (360)
T ss_dssp             --CCCTTCCEEEECTTTTTS-----------SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHH
T ss_pred             --cccccceeeeeeeccccc-----------eeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHH
Confidence              567899999999887542           34555677888889999997443  33333322111100          


Q ss_pred             hcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC--CCC-CEEEEEecCCCCC
Q 011567          337 LSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN--PES-PIVFLILEKSTGS  411 (483)
Q Consensus       337 ~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~~~-~i~~l~l~~~~~~  411 (483)
                      .......+....++....+....+....+.  ....++.++....+...+...........  .++ .++.+.+++.   
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~---  305 (360)
T d1bjna_         229 LNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADS---  305 (360)
T ss_dssp             HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSG---
T ss_pred             HHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCc---
Confidence            000011122222333333333344433332  23444455555555555554433222211  123 4567777431   


Q ss_pred             chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                           ....++.+ .++++||.+..+.. .+      +++|+++...+|+|||++++++|++..++
T Consensus       306 -----~~~~~~~~-~l~~~Gi~~~~G~~-~~------g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         306 -----ALDKLFLE-ESFAAGLHALKGHR-VV------GGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             -----GGHHHHHH-HHHHTTEECCBCCT-TT------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -----ccHHHHHH-HHHHCCCEeecCCC-cc------CeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence                 11234555 45667998765421 11      45999999999999999999999987643

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=2.3e-11  Score=119.88  Aligned_cols=290  Identities=16%  Similarity=0.097  Sum_probs=175.3

Q ss_pred             CCCcccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhh---hhhhccCCcEEEEcCCchhHHHh----HhhhcCCeE
Q 011567          146 PRGFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSA---IPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTV  217 (483)
Q Consensus       146 ~~~~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~a---i~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v  217 (483)
                      |...-|+.+...++++.|++++|.+.+-+- ..|+++...+   ++...++. .++++...|.+...    .+...|.++
T Consensus       100 pE~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~-~~~v~~~~~p~~~~v~~t~a~~~g~~v  178 (437)
T d1wyua1         100 PEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRM-GVLVSQGVHPEYRAVLRAYLEAVGAKL  178 (437)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCC-EEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhccc-ccccccccChHHhhhhhhhcccceeeE
Confidence            334567778889999999999999865443 3444433333   33344554 45567778866543    344668899


Q ss_pred             EEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcc-ccccccCCCCcc
Q 011567          218 VYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN-SFGVLGRSGRGL  296 (483)
Q Consensus       218 ~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~-s~g~lg~~G~g~  296 (483)
                      +.++.++....   +.+..+       .++.|++..+.. .|.+.+++++.+++++.|.++++|... +.+.+-+     
T Consensus       179 v~v~~~~~~~~---~~~~~~-------~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~-----  242 (437)
T d1wyua1         179 LTLPLEGGRTP---LPEVGE-------EVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP-----  242 (437)
T ss_dssp             EEECCBTTBCC---CCCCCT-------TEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCC-----
T ss_pred             Eeeecccccch---hhhhcc-------ceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhcccc-----
Confidence            88876542211   111222       367766666543 499999999999999999998888543 3222211     


Q ss_pred             ccccCCCCCceeEEEcccccccc-------CCCceeeccHHHHHHHHh-----------------------------cCC
Q 011567          297 TEHCGVPVDKIDIVTAAMGHALA-------TEGGFCTGSARVVDHQRL-----------------------------SSS  340 (483)
Q Consensus       297 ~~~~~v~~~~~Di~~~s~~K~lg-------~~GG~i~~~~~~~~~~~~-----------------------------~~~  340 (483)
                      ...+|     +||++++ +|.||       +.+|++++++++...+..                             .+.
T Consensus       243 Pg~~G-----aDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekat  316 (437)
T d1wyua1         243 PGAYG-----ADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAK  316 (437)
T ss_dssp             HHHHT-----CSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSS
T ss_pred             ccccc-----cceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccc
Confidence            12233     3899888 88876       123788888776554311                             111


Q ss_pred             ceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCC-CCEEEEEecCCCCCchhhHH
Q 011567          341 GYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-SPIVFLILEKSTGSMKNDLQ  417 (483)
Q Consensus       341 ~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-~~i~~l~l~~~~~~~~~~~~  417 (483)
                      +..+  +...+.+..+..-+..+-  ...++-++...++.+++++|.+++|+.+..+.. -.-+.+.+..          
T Consensus       317 snic--t~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~----------  384 (437)
T d1wyua1         317 SNIT--TNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK----------  384 (437)
T ss_dssp             CCCC--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS----------
T ss_pred             cchh--hHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC----------
Confidence            1111  223333333333333332  224566777889999999999988887653311 1223333321          


Q ss_pred             HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567          418 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS  475 (483)
Q Consensus       418 ~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~  475 (483)
                      ...++.+++++ +|+......++..    ....+.++++-..|++|||++++++++++
T Consensus       385 ~~~~i~k~L~d-~G~~~~~~~~~~~----~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         385 DPEAVRRALAE-RGFHGATPVPREY----GENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CHHHHHHHHHH-TTCCCCEECCTTS----CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHh-CCCCCCcccccCC----CCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            13467777655 5887544322211    12458999999999999999999998863

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=1.6e-09  Score=107.89  Aligned_cols=322  Identities=13%  Similarity=0.106  Sum_probs=185.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCC-CCcccChHHHHHHHHHHHhhhCCCCEEE--ecccHHHHHhh---hhhhc-----cC
Q 011567          124 GHEKLLESCTSALEKYGVGSCGP-RGFYGTIDVHLDCEARIAKFLGTPDSIL--YSYGLSTMFSA---IPCFC-----KK  192 (483)
Q Consensus       124 ~~p~i~~a~~~~l~~~g~g~~~~-~~~~g~~~~~~~l~~~La~~~g~e~~i~--~~sG~~a~~~a---i~~~~-----~~  192 (483)
                      -+|.+.+.+.+.+..|.  ...| -..-|+.+..-+++..|++++|.+-+-.  |.+++++.+++   .+...     +.
T Consensus        77 y~P~v~~~~~~~~TaYT--PYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~  154 (471)
T d1wyub1          77 YNPKLHEEAARLFADLH--PYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT  154 (471)
T ss_dssp             CCCHHHHHHHHTTSSCC--TTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cCcchhhhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccc
Confidence            45888888765443332  2222 3456777888899999999999985543  44444333332   22211     12


Q ss_pred             CcEEEEcCCchhHHHhHhhhcCCeEEEecCC--CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc-ChHHHHH
Q 011567          193 GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA-PLDELIR  269 (483)
Q Consensus       193 gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~-~L~~l~~  269 (483)
                      ...+......|..........+..++.++..  ...+++........       .++.+++..+... |.+. ..+++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~a~v~v~~p~~~-g~~e~~~~~~~~  226 (471)
T d1wyub1         155 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP-------HVAALMLTNPNTL-GLFERRILEISR  226 (471)
T ss_dssp             CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST-------TEEEEEECSSCTT-SCCCTTHHHHHH
T ss_pred             cccccCCcccccceeeeeecccceeecccccccccccchhhhhhhhc-------cccceeeccCCCc-ccccchhhhhHH
Confidence            3455566666666666666666676666543  22233333333333       2667777666555 4444 5899999


Q ss_pred             HHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC------CC-ceeeccHHHHHHHHhc----
Q 011567          270 LKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT------EG-GFCTGSARVVDHQRLS----  338 (483)
Q Consensus       270 l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~------~G-G~i~~~~~~~~~~~~~----  338 (483)
                      ++++.+..+++|-+.-...++-.   -...++     .|+++...++.||.      +| ||++.+++++..+...    
T Consensus       227 ~~h~~g~~~~~~~~~~~~~~~l~---~p~~~g-----~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~  298 (471)
T d1wyub1         227 LCKEAGVQLYYDGANLNAIMGWA---RPGDMG-----FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER  298 (471)
T ss_dssp             HHHHHTCEEEEEGGGGGGTTTTC---CHHHHT-----CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEE
T ss_pred             HHHhccccccccccchhhhhhcc---ccCccc-----ccccccccccccccccccccccccceeehhhhhccCCCceecC
Confidence            99999999998865432212210   011122     26666677888862      11 6777787776554210    


Q ss_pred             CCc-e------------eecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEE-
Q 011567          339 SSG-Y------------VFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF-  402 (483)
Q Consensus       339 ~~~-~------------~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~-  402 (483)
                      +.. +            ...++.+.+.+.++...+..+-  ...++-++..+++.+++++|+. +|+++..+  +|++. 
T Consensus       299 ~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~--~~ff~E  375 (471)
T d1wyub1         299 GEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYD--GPSMHE  375 (471)
T ss_dssp             CSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSC--SSCCSC
T ss_pred             CCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccC--cceeeE
Confidence            000 0            0112223333333333333332  2346778888999999999976 69887533  33322 


Q ss_pred             EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567          403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV  477 (483)
Q Consensus       403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  477 (483)
                      +.++.+.+.      ...++.+++++ +|++.....+|...    ...+-||++-.+|++|||+++++|++++++
T Consensus       376 Fvv~~~~~~------~~~~i~k~L~~-~G~~~~~~~~p~~~----~~~llv~vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         376 FVAQPPEGF------RALDLAKGLLE-LGFHPPTVYFPLIV----KEALMVEPTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             EEEBCSTTC------CHHHHHHHHHH-TTCCCCEESCSTTS----TTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EeecCCCCC------CHHHHHHHHHH-cCCCCCcccCcCCC----CCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            223222211      12356777665 48865444444331    235889999999999999999999998864