Citrus Sinensis ID: 011775

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MNGEGQEEKMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPPT
ccccccccccccEEEEEccccccccccccccccEEEEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccccccccEEEccccccccccccccEEEEEcccEEEEcccccEEEcccccEEEEcccccccccccccccEEEcEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccccEEEccEEccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEEccccEEEEEcccccEEEEEcccc
ccccccccccccEEEEEEcccccccccccccccccEEHHHHccccEEEEEEccccEEEEEEcccEEEEEccccccccccccccccccccEEEHcccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccccEEHHHcccEEEEEEEEcccEEEEEEcccEEEEEccccccEEEcccccccccccccccccccccEEHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccHHHHHHHHHcccccccccccccccccEEccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEEcccEEEEEEEcccEEEEEEcccc
mngegqeeKMERVVFMWgylpgalpqrspilsplvvrlpltvgsawrdvcgggcGFAMAISDsrklitwgstddlgqsyvtsgkhgeipepfplpteASIVKAAAGWAHCVAVteggevytwgwkecvpsgrvfgdlstgtgldkdvFERQSsflteqvsprsqvsrssggtssgtdgrgsgeegskRRRISLAKQtaessssgdenlsafpclvtlnpgvriatVAAGGRHTLALSDigqvwgwgyggegqlglgsrirmvssphpipciessygkdrsaalsrgsvnsegpgfrvpgnyvkgiacggrhsaviTDAGALltfgwglygqcgqgstddelspncvsSLLGIQIEGVAAGLWHTIcissdgdvyafggnqfgqlgtggdqaetlprlldapslenvhsksvscgarhtaviaddgkvfcwgwnkygqlglgdvidrnipsqvtiegcvprnvacgwWHTLLLAVPPT
mngegqeekMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSflteqvsprsqvsrssggtssgtdgrgsgeegskrrRISLAKqtaessssgdenlsAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGsvnsegpgfrvPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPPT
MNGEGQEEKMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEqvsprsqvsrssggtssgtdgrgsgeegskrrrISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIgqvwgwgyggegqlglgSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAfggnqfgqlgtggDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPPT
***********RVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGK***I*EPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDK****************************************************************AFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMV*******C************************FRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGG********LL*******VHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAV***
**********ERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFE*QSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPP*
********KMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSF****************************************************NLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPPT
**********ERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAV***
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MNGEGQEEKMERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVPPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.731 0.793 0.306 2e-37
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.446 0.043 0.344 4e-28
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.459 0.207 0.329 8e-26
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.459 0.207 0.321 2e-25
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.459 0.207 0.321 4e-25
Q9UII4 1024 E3 ISG15--protein ligase no no 0.494 0.230 0.308 4e-25
A6NED2376 RCC1 domain-containing pr no no 0.427 0.542 0.301 5e-25
Q4R828376 RCC1 domain-containing pr N/A no 0.421 0.534 0.300 2e-24
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.473 0.046 0.287 2e-23
Q8BTU7377 RCC1 domain-containing pr no no 0.427 0.541 0.311 4e-23
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 187/411 (45%), Gaps = 62/411 (15%)

Query: 49  VCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEAS------IVK 102
           +   G   ++A+     + +WG  +D GQ       HG+  E  P PT+ S      IV 
Sbjct: 19  IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGD-AEDRPSPTQLSALDGHQIVS 71

Query: 103 AAAGWAHCVAVTEGG-EVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSP 161
              G  H VA ++ G EVY+WGW +       FG L  G G   D+F          +  
Sbjct: 72  VTCGADHTVAYSQSGMEVYSWGWGD-------FGRL--GHGNSSDLFTPLPIKALHGIRI 122

Query: 162 RSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGV 221
           +      S   +   +G       ++  ++ L          GD   S  P  +    G+
Sbjct: 123 KQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL----------GDTEDSLVPQKIQAFEGI 172

Query: 222 RIATVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSA 281
           RI  VAAG  HT A+++ G ++GWG+G  G LGLG                     DR+ 
Sbjct: 173 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG---------------------DRTD 211

Query: 282 ALSRGSVNSEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDEL 341
            L    V S G      G  +  +ACG RH+  ++ +GAL T+GW  YGQ G G  +D L
Sbjct: 212 RLVPERVTSTG------GEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL 265

Query: 342 SPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAP 401
            P+ + +L    I  ++ G  HT+ ++SDG +Y +G N+FGQ+G G +  +  P  +  P
Sbjct: 266 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 325

Query: 402 SLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQV 452
             + V    VSCG RHT  + +   VF WG    GQLG+G+ +DRN P  +
Sbjct: 326 DDQKV--VQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q8BTU7|RCCD1_MOUSE RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
255566472476 Serine/threonine-protein kinase Nek8, pu 0.983 0.985 0.827 0.0
356539897480 PREDICTED: probable E3 ubiquitin-protein 0.989 0.983 0.804 0.0
225449388484 PREDICTED: X-linked retinitis pigmentosa 0.995 0.981 0.804 0.0
296086178461 unnamed protein product [Vitis vinifera] 0.964 0.997 0.825 0.0
356569137472 PREDICTED: probable E3 ubiquitin-protein 0.981 0.991 0.800 0.0
356501083477 PREDICTED: probable E3 ubiquitin-protein 0.979 0.979 0.780 0.0
356551654477 PREDICTED: probable E3 ubiquitin-protein 0.987 0.987 0.780 0.0
449465846491 PREDICTED: E3 ubiquitin-protein ligase H 0.997 0.969 0.766 0.0
356569139459 PREDICTED: probable E3 ubiquitin-protein 0.953 0.991 0.775 0.0
357460949464 RCC1 and BTB domain-containing protein [ 0.970 0.997 0.757 0.0
>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/482 (82%), Positives = 433/482 (89%), Gaps = 13/482 (2%)

Query: 1   MNGEGQE----EKM--ERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGC 54
           MNGEG+E    E+M  E++VFMWGYLPGALPQRSPILSP+VVR     G +W+DVCGGGC
Sbjct: 1   MNGEGKEVMKMEEMVKEKLVFMWGYLPGALPQRSPILSPVVVR---ADGYSWKDVCGGGC 57

Query: 55  GFAMAISDSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVT 114
           GFAMAIS+S KLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASI+KAAAGWAHC+A T
Sbjct: 58  GFAMAISESGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIMKAAAGWAHCIAAT 117

Query: 115 EGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSS 174
           + GEVYTWGWKEC+PSG+VFGD S   G +KDVFER S FLTEQVSPRSQ SRS+GG   
Sbjct: 118 DTGEVYTWGWKECIPSGKVFGDPSVAGGTEKDVFERHSPFLTEQVSPRSQSSRSTGGI-- 175

Query: 175 GTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTL 234
             DGRGSG+E +KRRRIS AKQ+AESSSSGDE LSA PCLVTLNPGVRI TVAAGGRHTL
Sbjct: 176 --DGRGSGDESTKRRRISSAKQSAESSSSGDETLSALPCLVTLNPGVRITTVAAGGRHTL 233

Query: 235 ALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPG 294
           ALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHP+PC++ SYGKDR A  SRG + SEG G
Sbjct: 234 ALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCVDPSYGKDRPAPFSRGGMTSEGHG 293

Query: 295 FRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQI 354
           FRVPG+YVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSP CVS LLGI+I
Sbjct: 294 FRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPICVSPLLGIRI 353

Query: 355 EGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLENVHSKSVSCG 414
            GVAAGLWHTIC+S+DGDVYAFGGNQFGQLGTG DQAET PRLLDAPSLE++H+K VSCG
Sbjct: 354 AGVAAGLWHTICVSADGDVYAFGGNQFGQLGTGSDQAETTPRLLDAPSLEDIHAKVVSCG 413

Query: 415 ARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAV 474
           ARH+A++A+DGKVFCWGWNKYGQLGLGDVIDRNIPS VTIEGC+PRNVACGWWHTLLLA 
Sbjct: 414 ARHSAIVAEDGKVFCWGWNKYGQLGLGDVIDRNIPSPVTIEGCIPRNVACGWWHTLLLAE 473

Query: 475 PP 476
            P
Sbjct: 474 SP 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|225449388|ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086178|emb|CBI31619.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569137|ref|XP_003552762.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356501083|ref|XP_003519358.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|356551654|ref|XP_003544189.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|449465846|ref|XP_004150638.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] gi|449516435|ref|XP_004165252.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356569139|ref|XP_003552763.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357460949|ref|XP_003600756.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355489804|gb|AES71007.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2099986488 AT3G55580 [Arabidopsis thalian 0.968 0.946 0.628 1.3e-157
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.415 0.45 0.307 2.8e-27
RGD|1309901378 Rccd1 "RCC1 domain containing 0.153 0.193 0.383 7.3e-26
MGI|MGI:2444156377 Rccd1 "RCC1 domain containing 0.222 0.281 0.333 5.2e-25
UNIPROTKB|G3V2I3374 RCCD1 "RCC1 domain-containing 0.222 0.283 0.314 9.9e-25
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.362 0.035 0.361 1.2e-23
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.362 0.035 0.361 1.2e-23
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.362 0.035 0.355 1.2e-23
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.362 0.035 0.361 1.2e-23
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.362 0.035 0.351 4.8e-22
TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 299/476 (62%), Positives = 345/476 (72%)

Query:     4 EGQEEKM--ERVVFMWGYLPGALPQRSPILSPLVVRLPLTVGSAWRDVCGGGCGFAMAIS 61
             E +EE++  +RVV+MWGYLPGA PQRSP++SP+ V++P  V S+W+DV GGGCGFAMA +
Sbjct:    21 EKEEEEVVSQRVVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATA 80

Query:    62 DSRKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYT 121
             +S KLITWGSTDDLGQSYVTSGKHGE PEPFPLP E  + KA AGWAHCVAVTE  +VYT
Sbjct:    81 ESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYT 140

Query:   122 WGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEXXXXXXXXXXXXXXXXXXXXXXXX 181
             WGW+EC+P+GRVFG +      D D  ER  SF TE                        
Sbjct:   141 WGWRECIPTGRVFGQV------DGDSCERNISFSTEQVSSSSQGKKSSGGTSSQVEGRGG 194

Query:   182 XXXXXXXXXISLAKQTAESSSSGDE-NLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIX 240
                      IS +KQ AE+SS  D  +LSA PCLV+L PGVRI +VAAGGRHTLALSDI 
Sbjct:   195 GEPTKKRR-ISPSKQAAENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIG 253

Query:   241 XXXXXXXXXXXXXXXXSRIRMVSSPHPIPCIE-SSYGKDRSAALSRGSVNSEGPGFRVPG 299
                             SR+R+VSSPHPIPCIE SSYGK  S+ ++  SV   G   RV G
Sbjct:   254 QVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCG---RVLG 310

Query:   300 NYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAA 359
             +YVK IACGGRHSAVITD GALLTFGWGLYGQCGQGSTDDELSP CVSSLLGI+IE VAA
Sbjct:   311 SYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEEVAA 370

Query:   360 GLWHTICISSDGDVYAXXXXXXXXXXXXXDQAETLPRLLDAPSLENVHSKSVSCGARHTA 419
             GLWHT C SSDGDVYA             DQAETLP+LL+AP+LENV+ K++SCGARHTA
Sbjct:   371 GLWHTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTA 430

Query:   420 VIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPRNVACGWWHTLLLAVP 475
             VI D+G+VFCWGWNKYGQLG+GDVIDRN P++V I+ C P+N+ACGWWHTLLL  P
Sbjct:   431 VITDEGRVFCWGWNKYGQLGIGDVIDRNAPAEVRIKDCFPKNIACGWWHTLLLGQP 486
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1309901 Rccd1 "RCC1 domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2444156 Rccd1 "RCC1 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2I3 RCCD1 "RCC1 domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-34
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-15
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 9e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  132 bits (334), Expect = 9e-34
 Identities = 95/397 (23%), Positives = 147/397 (37%), Gaps = 56/397 (14%)

Query: 65  KLITWGS--TDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTW 122
            + +WGS   ++LG     +        PF    +ASI+K A G  H + +   G +Y+W
Sbjct: 69  SVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSW 128

Query: 123 GWKECVPSGRVFGDLSTGTGL---DKDVFERQSSFLTEQVSPRSQVSRS---------SG 170
           G       G +  D+         D   F+      T    P    ++S           
Sbjct: 129 G---DNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGW 185

Query: 171 GTSSGTDGRGS-GEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAG 229
             S      G     G+ R      +    S  +  +    F  L    P   I  +AAG
Sbjct: 186 EISVILTADGRVYSWGTFR----CGELGQGSYKNSQKTSIQFTPL--KVPKKAIVQLAAG 239

Query: 230 GRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVN 289
             H +AL++ G+V+GWG   +GQLG       +     +    +                
Sbjct: 240 ADHLIALTNEGKVYGWGSNQKGQLGRP-TSERLKLVVLVGDPFAI--------------- 283

Query: 290 SEGPGFRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTD----DELSPNC 345
                       +K +ACG  HS  + + G +  +G  ++GQ G GS          PN 
Sbjct: 284 ----------RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNY 333

Query: 346 VSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLDAPSLEN 405
              L G+ I  ++AG  H++ +  DG +YAFG    GQLG   +    +           
Sbjct: 334 KQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK 393

Query: 406 VHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGD 442
           +    V+CG  H     DDG V+ WGW ++G LG G 
Sbjct: 394 LEQ--VACGTHHNIARTDDGSVYSWGWGEHGNLGNGP 428

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.85
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.3
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.2
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.16
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.05
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.98
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.51
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.31
KOG3669 705 consensus Uncharacterized conserved protein, conta 90.47
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.31
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.96
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 82.52
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.51
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-52  Score=393.40  Aligned_cols=367  Identities=27%  Similarity=0.461  Sum_probs=283.8

Q ss_pred             cceEEEEEeecC-CCCCCCCCc---cccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCC-
Q 011775            9 KMERVVFMWGYL-PGALPQRSP---ILSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG-   83 (477)
Q Consensus         9 ~~~~~v~~WG~~-~g~lg~~~~---~~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~-   83 (477)
                      .+...||+||+| .++||.+..   +..|+..+.-.-....|++++||+. |+++|++||+||+||+|. -|+||.... 
T Consensus        65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~-hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~  142 (476)
T COG5184          65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN-HSLGLDHDGNLYSWGDND-DGALGRDIHK  142 (476)
T ss_pred             hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCc-eEEeecCCCCEEEeccCc-cccccccccc
Confidence            367899999999 888888743   3456655544223478999999997 999999999999999996 699986541 


Q ss_pred             ---------------CCCCCCcccCCCC----CCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccc
Q 011775           84 ---------------KHGEIPEPFPLPT----EASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLD  144 (477)
Q Consensus        84 ---------------~~~~~p~~v~~~~----~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~  144 (477)
                                     .....|..++..+    ..+|++++||+.++++|+++|+||+||.+.++.++....+.+      
T Consensus       143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s------  216 (476)
T COG5184         143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS------  216 (476)
T ss_pred             ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc------
Confidence                           1234555555521    337999999999999999999999999887765554322200      


Q ss_pred             cchhhcccccccccccCCcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEE
Q 011775          145 KDVFERQSSFLTEQVSPRSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIA  224 (477)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~  224 (477)
                                                                                 .+...+..|..+.   ...|+
T Consensus       217 -----------------------------------------------------------~k~~~~~~p~~v~---~~~i~  234 (476)
T COG5184         217 -----------------------------------------------------------QKTSIQFTPLKVP---KKAIV  234 (476)
T ss_pred             -----------------------------------------------------------ccceeeeeeeecC---chhee
Confidence                                                                       1111334454443   44899


Q ss_pred             EEEeCCCeEEEEecCCcEEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEE
Q 011775          225 TVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKG  304 (477)
Q Consensus       225 ~Ia~G~~h~~aLt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  304 (477)
                      ++++|.+|.++|+++|+||+||+|..||||.....+ ...+.+++.+-.                         -..|+.
T Consensus       235 qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~-~~~~~lv~~~f~-------------------------i~~i~~  288 (476)
T COG5184         235 QLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER-LKLVVLVGDPFA-------------------------IRNIKY  288 (476)
T ss_pred             eeccCCceEEEEecCCcEEEecCCcccccCCchhhh-cccccccCChhh-------------------------hhhhhh
Confidence            999999999999999999999999999999876422 223333321111                         123889


Q ss_pred             EeecCCeEEEEecCCCEEEEeecCCCCCCCCCCC----CcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 011775          305 IACGGRHSAVITDAGALLTFGWGLYGQCGQGSTD----DELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQ  380 (477)
Q Consensus       305 I~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~  380 (477)
                      |+||.+|+++|+++|+||+||.|.+||||.+...    ....|.....+.+..|.+|++|..|+++|..+|.||+||++.
T Consensus       289 vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~  368 (476)
T COG5184         289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGD  368 (476)
T ss_pred             cccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCc
Confidence            9999999999999999999999999999998221    245677777777778999999999999999999999999999


Q ss_pred             CCCcCCCCCCC--cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCC-CccccEEEe---e
Q 011775          381 FGQLGTGGDQA--ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVI-DRNIPSQVT---I  454 (477)
Q Consensus       381 ~gqLG~~~~~~--~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~-~~~~P~~v~---~  454 (477)
                      .+|||..+...  ...|+++.    ...++.+++||..|+++.+++|+||.||++++|+||+++.. +...|+.++   +
T Consensus       369 ~~qlg~~~~~~~~~~~~~~ls----~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~  444 (476)
T COG5184         369 RGQLGIQEEITIDVSTPTKLS----VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLL  444 (476)
T ss_pred             cccccCcccceeecCCccccc----cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhcccccccccccc
Confidence            99999998443  33444443    12469999999999999999999999999999999999764 456788877   4


Q ss_pred             CCCceEEEEecCCeeEEEEcC
Q 011775          455 EGCVPRNVACGWWHTLLLAVP  475 (477)
Q Consensus       455 ~~~~v~~v~~G~~hs~~l~~~  475 (477)
                      +...++...||.+++++....
T Consensus       445 ~~~~~i~~g~~~~~~v~~~~~  465 (476)
T COG5184         445 SGHNIILAGYGNQFSVIEETM  465 (476)
T ss_pred             CCCceEEeccCcceEEEecch
Confidence            577889999999998887554

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-25
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-24
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 4e-24
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-24
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-12
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-09
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-08
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 2e-08
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-07
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 6/201 (2%)
Query: 274 SYGKDRSAALSRGSVNSEGPGFRV---PGNYVKGIACGGRHSAVITDAGALLTFGWGLYG 330
           S+G++++  L  G         ++    G  +K +A G  H+A +T+ G L  +GWG YG
Sbjct: 134 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYG 193
Query: 331 QCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAXXXXXXXXXXXXXDQ 390
             G G   D L P  V+S  G +   VA G  HTI +S  G +Y               +
Sbjct: 194 NLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE 253
Query: 391 AETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPS 450
              +P  L+A  L N     +S GARHT  +  DGK++ WGWNK+GQ+G+G+ +D+  P 
Sbjct: 254 DHLIPHKLEA--LSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV 311
Query: 451 QVTI-EGCVPRNVACGWWHTL 470
           QV   +      V+CGW HTL
Sbjct: 312 QVRFPDDQKVVQVSCGWRHTL 332
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.48
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.26
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.92
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.68
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.31
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.42
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 87.32
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 86.77
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 84.76
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 82.5
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.7e-73  Score=564.41  Aligned_cols=365  Identities=26%  Similarity=0.438  Sum_probs=312.5

Q ss_pred             cccceEEEEEeecC-CCCCCCCCcc--ccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCC
Q 011775            7 EEKMERVVFMWGYL-PGALPQRSPI--LSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG   83 (477)
Q Consensus         7 ~~~~~~~v~~WG~~-~g~lg~~~~~--~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~   83 (477)
                      ..+.+++||+||.| .||||.....  ..|+++....  ..+|++|++|.. |+++|+++|+||+||.|. +||||.+..
T Consensus        15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~-~GqLG~g~~   90 (389)
T 3kci_A           15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQ-TLFAVTADGKLYATGYGA-GGRLGIGGT   90 (389)
T ss_dssp             ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHH--HTCEEEEEEETT-EEEEEETTSCEEEEECCG-GGTTSSSSS
T ss_pred             eECCCCeEEEeeCCCCccCCCCcCccccCCEeccccc--CCceEEEEeCCC-eEEEEcCCCcEEEEECCC-CCCCCCCCc
Confidence            34689999999999 9999976544  4455555432  368899999876 999999999999999996 899998877


Q ss_pred             CCCCCCcccCCCCCC--CEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccC
Q 011775           84 KHGEIPEPFPLPTEA--SIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSP  161 (477)
Q Consensus        84 ~~~~~p~~v~~~~~~--~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (477)
                      .....|.+++.....  ++++|+||..|++||+++|+||+||.|.+||||...                           
T Consensus        91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~---------------------------  143 (389)
T 3kci_A           91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN---------------------------  143 (389)
T ss_dssp             CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS---------------------------
T ss_pred             CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC---------------------------
Confidence            666677777655544  457899999999999999999999999999998521                           


Q ss_pred             CcccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCc
Q 011775          162 RSQVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQ  241 (477)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~  241 (477)
                                                                  ......|.+++.+...+|++|+||..|++||+++|+
T Consensus       144 --------------------------------------------~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~  179 (389)
T 3kci_A          144 --------------------------------------------RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGD  179 (389)
T ss_dssp             --------------------------------------------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSC
T ss_pred             --------------------------------------------CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCe
Confidence                                                        112346777777777799999999999999999999


Q ss_pred             EEEEeCCCCCcccCCCCCccccCCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecC--CeEEEEecCC
Q 011775          242 VWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGG--RHSAVITDAG  319 (477)
Q Consensus       242 vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~--~~~~~lt~~g  319 (477)
                      ||+||.|.+||||.++.. ....|.+++.+..                          .+|++|+||.  .|+++|+++|
T Consensus       180 v~~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~--------------------------~~v~~ia~G~g~~~t~~l~~~G  232 (389)
T 3kci_A          180 LYTWGKGRYGRLGHSDSE-DQLKPKLVEALQG--------------------------HRVVDIACGSGDAQTLCLTDDD  232 (389)
T ss_dssp             EEEEECCGGGTTCSSSCC-CEEEEEECGGGTT--------------------------SCEEEEEECCSSCEEEEEETTT
T ss_pred             EEEeCCCCCCCcCCCCCc-ccccceEecccCC--------------------------CeEEEEEEcCCCcEEEEEccCC
Confidence            999999999999998763 3455776654443                          6799999995  8999999999


Q ss_pred             CEEEEeecCCCCCCCCCCCCcccceeecccCCCcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 011775          320 ALLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAETLPRLLD  399 (477)
Q Consensus       320 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~  399 (477)
                      +||+||.|.+||||.+.......|.+++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|+.++
T Consensus       233 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~  312 (389)
T 3kci_A          233 TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ  312 (389)
T ss_dssp             EEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred             EEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec
Confidence            99999999999999999888899999999888899999999999999999999999999999999999887778888887


Q ss_pred             CCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEe-eCCCceEEEEecCCeeEEEEcC
Q 011775          400 APSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT-IEGCVPRNVACGWWHTLLLAVP  475 (477)
Q Consensus       400 ~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~-~~~~~v~~v~~G~~hs~~l~~~  475 (477)
                        .+.+.+|++|+||.+|++||+++|+||+||.|.+||||++...+...|++|+ +.+.+|.+|+||.+|++||+++
T Consensus       313 --~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~  387 (389)
T 3kci_A          313 --GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS  387 (389)
T ss_dssp             --GGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC-
T ss_pred             --cCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEecC
Confidence              4667789999999999999999999999999999999999999999999997 4577999999999999999987
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-37
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-19
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-13
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-08
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 1e-37
 Identities = 99/425 (23%), Positives = 158/425 (37%), Gaps = 45/425 (10%)

Query: 57  AMAISDSRKLITWGSTDD--LGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAVT 114
               ++   ++T G  D   LG          E  +P  +     +V+A AG  H V ++
Sbjct: 8   RSHSTEPGLVLTLGQGDVGQLGLGENVM----ERKKPALVSIPEDVVQAEAGGMHTVCLS 63

Query: 115 EGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRSQVSRSSGGTSS 174
           + G+VY++G  +        G L   T ++          L E+V   S     +   + 
Sbjct: 64  KSGQVYSFGCND-------EGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD 116

Query: 175 GTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTL 234
                  G        I L            E +      V +   V +  VA+G  H +
Sbjct: 117 DGRVFLWGSFRDNNGVIGL-----------LEPMKKSMVPVQVQLDVPVVKVASGNDHLV 165

Query: 235 ALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIESSYGKDRSAALSRGSVNSEGPG 294
            L+  G ++  G G +GQLG    +             +  G+     L           
Sbjct: 166 MLTADGDLYTLGCGEQGQLGRVPEL-----------FANRGGRQGLERLLVPKCVMLKSR 214

Query: 295 FRVPGNYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLG--I 352
                   +   CG   +  I+  G +  FG   Y Q G   T+    P  ++S      
Sbjct: 215 GSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 274

Query: 353 QIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQAE-TLPRLLDAPSLENVHSKSV 411
              G + G  HT+C+ S+G  Y+ G  ++G+LG G    E ++P L+    L  V   SV
Sbjct: 275 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI--SRLPAV--SSV 330

Query: 412 SCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVT---IEGCVPRNVACGWWH 468
           +CGA     +  DG+VF WG     QLG G   D   P ++    +E  V  +V+ G  H
Sbjct: 331 ACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQH 390

Query: 469 TLLLA 473
           T+LL 
Sbjct: 391 TVLLV 395
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.77
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.78
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.05
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 91.68
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-61  Score=480.89  Aligned_cols=371  Identities=24%  Similarity=0.371  Sum_probs=298.1

Q ss_pred             ccccceEEEEEeecC-CCCCCCCCcc-ccceEecCCCCCCcccccccccccceEEEEecCCcEEEecCCCCCCCccccCC
Q 011775            6 QEEKMERVVFMWGYL-PGALPQRSPI-LSPLVVRLPLTVGSAWRDVCGGGCGFAMAISDSRKLITWGSTDDLGQSYVTSG   83 (477)
Q Consensus         6 ~~~~~~~~v~~WG~~-~g~lg~~~~~-~~p~~~~~~~~~~~~i~~v~~g~~~~~~~lt~~G~v~~wG~n~~~gqlg~~~~   83 (477)
                      +....+|+||+||.| .||||.+... ..++|.+++..  .+|++|++|.. |++||+++|+||+||.|. +||||.+..
T Consensus         9 ~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~ia~G~~-h~~al~~~G~vy~wG~n~-~GQLG~g~~   84 (401)
T d1a12a_           9 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGM-HTVCLSKSGQVYSFGCND-EGALGRDTS   84 (401)
T ss_dssp             TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSS-EEEEEETTSCEEEEECCT-TSTTCSCCC
T ss_pred             EEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCC--CCeEEEEeCCC-EEEEEeCCCEEEEEeCCC-CCCCCcccc
Confidence            345689999999999 9999997432 34444444433  78999999986 999999999999999996 899998877


Q ss_pred             CCCCCCcccCCCCCCCEEEEecCcceEEEEecCCcEEEeeCCCCCCCCCccCCCCCCcccccchhhcccccccccccCCc
Q 011775           84 KHGEIPEPFPLPTEASIVKAAAGWAHCVAVTEGGEVYTWGWKECVPSGRVFGDLSTGTGLDKDVFERQSSFLTEQVSPRS  163 (477)
Q Consensus        84 ~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (477)
                      .....|.+..+....+|++|+||..|+++++++|+||+||.+...+.+.....                           
T Consensus        85 ~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~---------------------------  137 (401)
T d1a12a_          85 VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE---------------------------  137 (401)
T ss_dssp             STTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSB---------------------------
T ss_pred             cccccccccccccccceeeecccccceeeccccccceeccccccccccccccC---------------------------
Confidence            77777777777777899999999999999999999999998765433211000                           


Q ss_pred             ccccccCCCCCCCCCCCCCcCCCceeeeehhhcccccCCCCCCcccccceEEecCCCCcEEEEEeCCCeEEEEecCCcEE
Q 011775          164 QVSRSSGGTSSGTDGRGSGEEGSKRRRISLAKQTAESSSSGDENLSAFPCLVTLNPGVRIATVAAGGRHTLALSDIGQVW  243 (477)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~~~i~~Ia~G~~h~~aLt~~G~vy  243 (477)
                                                                 .....+..+......+|++|+||..|+++++.+|++|
T Consensus       138 -------------------------------------------~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~  174 (401)
T d1a12a_         138 -------------------------------------------PMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLY  174 (401)
T ss_dssp             -------------------------------------------BTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred             -------------------------------------------CccccceeeeeccCCceeEEEecccceeeeecCCccc
Confidence                                                       0111222333444568999999999999999999999


Q ss_pred             EEeCCCCCcccCCCCCcccc----------CCcccCccccccCCCcccccccCccCCCCCCcccCCCcEEEEeecCCeEE
Q 011775          244 GWGYGGEGQLGLGSRIRMVS----------SPHPIPCIESSYGKDRSAALSRGSVNSEGPGFRVPGNYVKGIACGGRHSA  313 (477)
Q Consensus       244 ~wG~n~~gqlG~~~~~~~~~----------~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~G~~~~~  313 (477)
                      +||.|.+||||.........          .|..+....                     .......+|++|+||.+|++
T Consensus       175 ~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~i~~v~~g~~~~~  233 (401)
T d1a12a_         175 TLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS---------------------RGSRGHVRFQDAFCGAYFTF  233 (401)
T ss_dssp             EEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBC---------------------SSCCSBCCEEEEEEETTEEE
T ss_pred             ccccCCccccCCCCccccccCCccccccccccceeeccc---------------------cCCCCCceEEEEEecCCeEE
Confidence            99999999999765321111          111111100                     01222357999999999999


Q ss_pred             EEecCCCEEEEeecCCCCCCCCCCCCcccceeecccCC--CcEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC
Q 011775          314 VITDAGALLTFGWGLYGQCGQGSTDDELSPNCVSSLLG--IQIEGVAAGLWHTICISSDGDVYAFGGNQFGQLGTGGDQA  391 (477)
Q Consensus       314 ~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~hs~alt~~G~vy~wG~n~~gqLG~~~~~~  391 (477)
                      +|+++|+||+||.|.++++|.........+..+..+..  ..|+++++|..|+++|+++|+||+||.|.+||||.+....
T Consensus       234 ~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~  313 (401)
T d1a12a_         234 AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE  313 (401)
T ss_dssp             EEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCC
T ss_pred             EEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccc
Confidence            99999999999999999999988887777777665543  4799999999999999999999999999999999987544


Q ss_pred             -cccceeecCCCCCCcceEEEEeCCCeEEEEECCCcEEEEECCCCCCcCCCCCCCccccEEEeeC---CCceEEEEecCC
Q 011775          392 -ETLPRLLDAPSLENVHSKSVSCGARHTAVIADDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIE---GCVPRNVACGWW  467 (477)
Q Consensus       392 -~~~p~~v~~~~~~~~~i~~i~~G~~hs~al~~~g~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~---~~~v~~v~~G~~  467 (477)
                       ...|+.++.  +  .+|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|++|..+   +.+|.+|+||.+
T Consensus       314 ~~~~P~~i~~--~--~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~  389 (401)
T d1a12a_         314 EKSIPTLISR--L--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ  389 (401)
T ss_dssp             CEEEEEECCS--S--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSS
T ss_pred             cccCCEEcCC--C--CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccc
Confidence             457887763  3  46999999999999999999999999999999999999999999998743   568999999999


Q ss_pred             eeEEEEcC
Q 011775          468 HTLLLAVP  475 (477)
Q Consensus       468 hs~~l~~~  475 (477)
                      ||++|+++
T Consensus       390 hs~~l~~d  397 (401)
T d1a12a_         390 HTVLLVKD  397 (401)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEC
Confidence            99999987
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure