Citrus Sinensis ID: 011798

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGDEFDCDDDTRNGND
ccEEEEEEEccccEEEEcccccEEEEEcccccccccccccccEEcccccccccccccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccEEcEEEcccccccEEEEEEEccccEEEEEccccccccccccEEEEccccccccccccccccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEEEccccccccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccEEEEccccEEEEEccccEEEEEEEcccEEEEEccccccccccccccEEEcEEEEcccccEEEEEEccccEEEEEEccccEEEEcccccccccccccccEEEccccccHHHHHHHHcEEEEEEEcccccEEEcccccccc
cccEEEEEcccccEEEEEcccEEEEEEccccccccccccccccccccccccccccHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEEcccEEEEcccccEEEccccccccccccEEEHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHcccccHHHHccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccccHHHHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccc
mdineiigetarpvdnipaksAIYVWgynhsgqtgrkgrerqlripkqlppelfgcpagansrwldiACGHehtaavasdgtlftwganefgqlgdgteegrkhpEKVKQLQSEFVKSIscgahctaaiaeprendgtistsrlwvwgqnqgsnfprlfwgaftpntiicqvscgsVHVVALSECGllqawgyneygqlgrgitceglqgprVIKGYAKFLdeapelekitqvscgeyhsaavsengevytwglgsvgqlghcslqsgdkellpRRVVALDGifikdvacggvhscaltskgalyawggsqagqlglgpqtrsfslipnesdtyfrnipilvvpngvqlvacghshtlvymrdgrihgwgynsygqaanekstyawypspvdwcVGEVRklaaggghsAVLADACSLKELCEFRLaesvtlsnaseiEDVASRTGSEALARLCERLRehslhgdefdcdddtrngnd
mdineiigetarpvdnipAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAiaeprendgTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAEsvtlsnaseiedvasrtGSEALARLCERLrehslhgdefdcdddtrngnd
MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGDEFDCDDDTRNGND
*************VDNIPAKSAIYVWGYNH********************PELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQL*******************EFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLS*********************************************
MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIP*****YFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESV***************GSEALARLCERLREHSLHGDEFDCD********
MDINEIIGETARPVDNIPAKSAIYVWGYNHS*********RQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGDEFDCDDDTRNGND
MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLR********************
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MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGDEFDCDDDTRNGND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.584 0.634 0.334 3e-35
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.693 0.313 0.303 2e-33
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.687 0.310 0.303 4e-33
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.687 0.310 0.303 6e-33
Q15034 1050 Probable E3 ubiquitin-pro no no 0.545 0.247 0.339 3e-31
P28745539 Protein pim1 OS=Schizosac yes no 0.784 0.693 0.268 6e-28
Q9R0X5 1001 X-linked retinitis pigmen no no 0.639 0.304 0.310 9e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.622 0.060 0.295 5e-27
Q9N1T2 1003 X-linked retinitis pigmen no no 0.672 0.320 0.310 6e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.461 0.219 0.337 2e-26
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 164/323 (50%), Gaps = 44/323 (13%)

Query: 65  LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH 124
           L I+ G  H+ A+ S   + +WG  E GQLG G  E R  P ++  L    + S++CGA 
Sbjct: 18  LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD 77

Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVS 173
            T A ++        S   ++ WG     +F RL  G     FTP  I       I Q++
Sbjct: 78  HTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126

Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
           CG  H +A++  G +Q+WG N+ GQLG G T + L  P+ I+ +        E  +I  V
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAF--------EGIRIKMV 177

Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
           + G  H+AAV+E+G++Y WG G  G LG   L      L+P RV +  G  +  VACG  
Sbjct: 178 AAGAEHTAAVTEDGDLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWR 234

Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG 353
           H+ +++  GALY +G S+ GQLG G       LIP++ +    +         +  ++ G
Sbjct: 235 HTISVSYSGALYTYGWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGG 284

Query: 354 HSHTLVYMRDGRIHGWGYNSYGQ 376
             HT+    DG+++GWG+N +GQ
Sbjct: 285 WRHTMALTSDGKLYGWGWNKFGQ 307
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|P28745|RCC1_SCHPO Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pim1 PE=1 SV=2 Back     alignment and function description
>sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris GN=RPGR PE=2 SV=1 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
255569912478 Protein pim1, putative [Ricinus communis 0.987 0.985 0.849 0.0
224120790462 predicted protein [Populus trichocarpa] 0.962 0.993 0.863 0.0
225451821478 PREDICTED: probable E3 ubiquitin-protein 0.964 0.962 0.841 0.0
356568831474 PREDICTED: X-linked retinitis pigmentosa 0.974 0.981 0.794 0.0
147791382461 hypothetical protein VITISV_032298 [Viti 0.953 0.986 0.844 0.0
357502467476 RCC1 and BTB domain-containing protein [ 0.970 0.972 0.809 0.0
356526548474 PREDICTED: E3 ubiquitin-protein ligase H 0.974 0.981 0.800 0.0
449481391472 PREDICTED: probable E3 ubiquitin-protein 0.987 0.997 0.783 0.0
449447436472 PREDICTED: probable E3 ubiquitin-protein 0.987 0.997 0.783 0.0
297828676471 regulator of chromosome condensation fam 0.970 0.983 0.803 0.0
>gi|255569912|ref|XP_002525919.1| Protein pim1, putative [Ricinus communis] gi|223534748|gb|EEF36439.1| Protein pim1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/471 (84%), Positives = 435/471 (92%)

Query: 1   MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGA 60
           MDI+EIIGET     N+P KSAIYVWGYNH+GQTGRKG+E++LRIPKQL PELFGCPAGA
Sbjct: 1   MDIDEIIGETTTRSMNLPTKSAIYVWGYNHNGQTGRKGKEQELRIPKQLSPELFGCPAGA 60

Query: 61  NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSIS 120
           N+RWLDIACG EHTAAVASDG+LFTWGANEFGQLGDGTEEG+K+P+KVKQL++EFVKS+S
Sbjct: 61  NARWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTEEGKKYPKKVKQLETEFVKSVS 120

Query: 121 CGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVV 180
           CGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSN+PRLF GAF  NTIICQVSCG+VHVV
Sbjct: 121 CGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNYPRLFSGAFALNTIICQVSCGAVHVV 180

Query: 181 ALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHS 240
           ALSE GLLQAWGYNEYGQLGRGITCEGLQGPRVI  YAKFLDEAPEL KIT+VSCGEYH+
Sbjct: 181 ALSEDGLLQAWGYNEYGQLGRGITCEGLQGPRVINAYAKFLDEAPELVKITRVSCGEYHT 240

Query: 241 AAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTS 300
           AA+SE GEVYTWGLGS GQLGH SLQSG+KELLPRRVVALDGI I DVACGGVH+CA+T 
Sbjct: 241 AAISEKGEVYTWGLGSTGQLGHTSLQSGNKELLPRRVVALDGILITDVACGGVHTCAVTQ 300

Query: 301 KGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVY 360
           KGALYAWGGSQ GQLGLGPQT SFS IP++++++ RNIP LV P GVQLVACGHSHTL+ 
Sbjct: 301 KGALYAWGGSQFGQLGLGPQTGSFSFIPSDTESFLRNIPALVFPTGVQLVACGHSHTLIC 360

Query: 361 MRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKEL 420
           +RDGRIHGWGYNSYGQAANEK+TYAWYPSPVDWCVGEVRKLAAGGGHSAVL DACSLKEL
Sbjct: 361 LRDGRIHGWGYNSYGQAANEKTTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKEL 420

Query: 421 CEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGDEFDCDDD 471
           CEFRLA+SVTLSNASEIEDVASRTG++ALARLC RLREH L G E D +DD
Sbjct: 421 CEFRLADSVTLSNASEIEDVASRTGADALARLCGRLREHLLDGSELDYEDD 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120790|ref|XP_002330952.1| predicted protein [Populus trichocarpa] gi|222873146|gb|EEF10277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451821|ref|XP_002281545.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera] gi|298204453|emb|CBI16933.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568831|ref|XP_003552611.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] Back     alignment and taxonomy information
>gi|147791382|emb|CAN65617.1| hypothetical protein VITISV_032298 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357502467|ref|XP_003621522.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355496537|gb|AES77740.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356526548|ref|XP_003531879.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|449481391|ref|XP_004156169.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447436|ref|XP_004141474.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297828676|ref|XP_002882220.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297328060|gb|EFH58479.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2076532471 AT3G02300 "AT3G02300" [Arabido 0.970 0.983 0.801 1.4e-206
ZFIN|ZDB-GENE-090313-139 1046 herc3 "hect domain and RLD 3" 0.528 0.240 0.359 1e-33
UNIPROTKB|F1RW66 1050 HERC3 "Uncharacterized protein 0.553 0.251 0.353 1.7e-33
RGD|1307803 909 Herc3 "HECT and RLD domain con 0.553 0.290 0.353 2.1e-33
UNIPROTKB|Q15034 1050 HERC3 "Probable E3 ubiquitin-p 0.553 0.251 0.350 5.9e-33
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.631 0.284 0.312 5.9e-33
UNIPROTKB|E2RMB0 1050 HERC3 "Uncharacterized protein 0.553 0.251 0.347 7.5e-33
UNIPROTKB|A2VDP7 1050 HERC3 "HERC3 protein" [Bos tau 0.553 0.251 0.350 1.6e-32
UNIPROTKB|F1NBC5 1050 HERC3 "Uncharacterized protein 0.553 0.251 0.347 2e-32
UNIPROTKB|E1C514 1050 HERC3 "Uncharacterized protein 0.626 0.284 0.318 2.6e-32
TAIR|locus:2076532 AT3G02300 "AT3G02300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1998 (708.4 bits), Expect = 1.4e-206, P = 1.4e-206
 Identities = 372/464 (80%), Positives = 408/464 (87%)

Query:     1 MDINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGA 60
             MDI EIIGE A P  +IP KSAIYVWGYN SGQTGR  +E+ LRIPKQLPPELFGCPAGA
Sbjct:     1 MDIGEIIGEVA-PSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGA 59

Query:    61 NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSIS 120
             NSRWLDI+CG EHTAAVASDG+LF WGANE+GQLGDGTE GRKHP+KVKQLQSEFVK +S
Sbjct:    60 NSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVS 119

Query:   121 CGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVV 180
             CGA CTAAIAEPRENDGT+STSRLWVWGQNQGSN PRLF GAF   T I QVSCG+ HVV
Sbjct:   120 CGAFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSCGTAHVV 179

Query:   181 ALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHS 240
             ALSE GLLQAWGYNE GQLGRG+TCEGLQ PRVI  YAKFLDEAPEL KI Q+SCGEYH+
Sbjct:   180 ALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHT 239

Query:   241 AAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTS 300
             AA+S+ GEVYTWGLGS+GQLGH SLQSGDKEL+PRRVV LDG+ +K+VACGGVH+CAL+ 
Sbjct:   240 AALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSL 299

Query:   301 KGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVY 360
             +GALYAWGG QAGQLGLGPQ+  F  + N S+   RN+P+LV+P  V+LVACGHSHTLVY
Sbjct:   300 EGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVY 359

Query:   361 MRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKEL 420
             MR+GRI GWGYNSYGQAANEKS+YAWYPSPVDWCVG+VRKLAAGGGHSAVL DA SLKEL
Sbjct:   360 MREGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQVRKLAAGGGHSAVLTDAFSLKEL 419

Query:   421 CEFRLAESVTLSNASEIEDVASRTGSEALARLCERLREHSLHGD 464
             CEF+LA+SV LSNASEI+DVA R GSEALARLCERLRE  L GD
Sbjct:   420 CEFQLADSVNLSNASEIQDVAFRMGSEALARLCERLREQLLDGD 463
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
ZFIN|ZDB-GENE-090313-139 herc3 "hect domain and RLD 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW66 HERC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307803 Herc3 "HECT and RLD domain containing E3 ubiquitin protein ligase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15034 HERC3 "Probable E3 ubiquitin-protein ligase HERC3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMB0 HERC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDP7 HERC3 "HERC3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C514 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-45
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-13
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-05
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  163 bits (414), Expect = 6e-45
 Identities = 118/449 (26%), Positives = 178/449 (39%), Gaps = 71/449 (15%)

Query: 20  KSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVAS 79
            +++Y WG N   + G    E ++  P+  P   FG    A+     IACG  H+  +  
Sbjct: 67  MASVYSWGSNGMNELGLGNDETKVDRPQLNP---FGRIDKASII--KIACGGNHSLGLDH 121

Query: 80  DGTLFTWGANEFGQLGDGTEEGRKH----------------PEKV----KQLQSEFVKSI 119
           DG L++WG N+ G LG    +                    P KV           V  +
Sbjct: 122 DGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKL 181

Query: 120 SCGAHCTAAIAEPRENDGTISTSRLWVWGQN------QGSNFPRLFWGA-FTPNTI---- 168
           +CG   +  +          +  R++ WG        QGS          FTP  +    
Sbjct: 182 ACGWEISVIL---------TADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKA 232

Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
           I Q++ G+ H++AL+  G +  WG N+ GQLGR  T E L+           + +   + 
Sbjct: 233 IVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRP-TSERLKLV-------VLVGDPFAIR 284

Query: 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCS-LQSGDKELLPRRVVALDGIFIKD 287
            I  V+CG+ HS A+ E+GE+Y WG+   GQLG  S  + G     P     L G+ I  
Sbjct: 285 NIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICS 344

Query: 288 VACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGV 347
           ++ G  HS  L   G LYA+G    GQLG          I  E          L V   +
Sbjct: 345 ISAGESHSLILRKDGTLYAFGRGDRGQLG----------IQEEITIDVSTPTKLSVAIKL 394

Query: 348 QLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGH 407
           + VACG  H +    DG ++ WG+  +G   N     A    P       + +     GH
Sbjct: 395 EQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK-EADVLVP------TLIRQPLLSGH 447

Query: 408 SAVLADACSLKELCEFRLAESVTLSNASE 436
           + +LA   +   + E  +   + L    E
Sbjct: 448 NIILAGYGNQFSVIEETMDTVIELFEKRE 476

Length = 476
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.92
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.22
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.21
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.19
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.16
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.05
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.91
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.17
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.74
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.44
KOG3669705 consensus Uncharacterized conserved protein, conta 85.63
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.18
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 80.28
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-52  Score=390.22  Aligned_cols=368  Identities=27%  Similarity=0.476  Sum_probs=289.2

Q ss_pred             cccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcC
Q 011798           15 DNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQL   94 (477)
Q Consensus        15 ~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqL   94 (477)
                      .....-..||+||+|..+|||+++++.....|+..++...     ....|++++||..|+++|++||+||+||.|..|+|
T Consensus        62 ~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~-----d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L  136 (476)
T COG5184          62 HLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRI-----DKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL  136 (476)
T ss_pred             hhhhheeeeEEEecCcceeeccCCchhcccCceecCcccc-----cceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence            3677788999999999999999999988889998886543     45889999999999999999999999999999999


Q ss_pred             CCCCC----------------cCccccccccc----ccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCC
Q 011798           95 GDGTE----------------EGRKHPEKVKQ----LQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSN  154 (477)
Q Consensus        95 G~~~~----------------~~~~~p~~v~~----~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~  154 (477)
                      |....                ....+|..|+.    ....+|++++||+.+++++++         +|+||.||...-..
T Consensus       137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~---------~G~V~~~gt~r~~e  207 (476)
T COG5184         137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTA---------DGRVYSWGTFRCGE  207 (476)
T ss_pred             ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEcc---------CCcEEEecCccccc
Confidence            98771                12467777765    234489999999999999999         99999999865332


Q ss_pred             CCce-----------eecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccccccc
Q 011798          155 FPRL-----------FWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE  223 (477)
Q Consensus       155 ~~~~-----------~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~  223 (477)
                      ...-           ......+...|+++++|.+|.++|+++|+||+||+|.+||||..........+ .+..       
T Consensus       208 ~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~-lv~~-------  279 (476)
T COG5184         208 LGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV-LVGD-------  279 (476)
T ss_pred             cccccccccccceeeeeeeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhccccc-ccCC-------
Confidence            2110           11111225689999999999999999999999999999999987654322222 2211       


Q ss_pred             CccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCC-CCCCccccceeeeecCCceEEEEEccCceEEEEecCC
Q 011798          224 APELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSL-QSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKG  302 (477)
Q Consensus       224 ~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~-~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G  302 (477)
                      ......|+.|+||.+|+++|+++|+||+||.|.+||||.++. ........|.....+.+..|.+|++|..|+++|..+|
T Consensus       280 ~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G  359 (476)
T COG5184         280 PFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDG  359 (476)
T ss_pred             hhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCc
Confidence            112345889999999999999999999999999999998732 1122345677777777888999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCC
Q 011798          303 ALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKS  382 (477)
Q Consensus       303 ~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~  382 (477)
                      .||+||++..+|||.....+..          .+..++.....++..++||..|+++.+.+|+||.||++++|+||.++.
T Consensus       360 ~l~a~Gr~~~~qlg~~~~~~~~----------~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~  429 (476)
T COG5184         360 TLYAFGRGDRGQLGIQEEITID----------VSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK  429 (476)
T ss_pred             eEEEecCCccccccCcccceee----------cCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence            9999999999999987744321          122222223357899999999999999999999999999999998765


Q ss_pred             cc-ccCCeeccc--c-cCceEEEEecCCceEEEecC
Q 011798          383 TY-AWYPSPVDW--C-VGEVRKLAAGGGHSAVLADA  414 (477)
Q Consensus       383 ~~-~~~p~~v~~--~-~~~i~~v~~G~~~t~~l~~~  414 (477)
                      .. ...|+.++.  . ...++..-+|.+..++....
T Consensus       430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~  465 (476)
T COG5184         430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM  465 (476)
T ss_pred             hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence            54 445666652  1 23677778887777776554

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-36
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-24
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-15
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-36
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-24
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 4e-15
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 6e-36
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-24
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-15
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-35
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-23
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-15
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 9e-24
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-22
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-19
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-15
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 3e-17
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 2e-15
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-13
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-12
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-11
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-11
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 5e-04
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 5e-04
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 172/383 (44%), Gaps = 62/383 (16%)
Query: 26  WGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT-LF 84
           WG    GQ G    E +   P QL        A    + + + CG +HT A +  G  ++
Sbjct: 28  WGRGEDGQLGHGDAEDRPS-PTQLS-------ALDGHQIVSVTCGADHTVAYSQSGMEVY 79
Query: 85  TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCG-AHCTAAIAEPRENDGTISTSR 143
           +WG  +FG+LG G       P  +K L    +K I+CG +HC A   E     G + +  
Sbjct: 80  SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTME-----GEVQS-- 132
Query: 144 LWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVSCGSVHVVALSECGLLQAWG 192
              WG+NQ     +L  G    +  P  I       I  V+ G+ H  A++E G L  WG
Sbjct: 133 ---WGRNQNG---QLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 186
Query: 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTW 252
           +  YG LG G   + L   RV              EK++ V+CG  H+ +VS +G +YT+
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGG---------EKMSMVACGWRHTISVSYSGALYTY 237
Query: 253 GLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312
           G    GQLGH  L+     L+P ++ AL   FI  ++ G  H+ ALTS G LY WG ++ 
Sbjct: 238 GWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLV--ACGHSHTLVYMRDGRIHGW 369
           GQ+G+G      S             P+ V  P+  ++V  +CG  HTL       +  W
Sbjct: 295 GQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 341
Query: 370 GYNSYGQAANEKSTYAWYPSPVD 392
           G  + GQ    +S    +P  ++
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIE 364
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-106
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-82
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-65
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-56
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-32
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 9e-27
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-06
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-103
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-87
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-73
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-36
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-23
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-100
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-83
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-65
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-33
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-26
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-99
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-73
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-64
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-31
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-25
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-05
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-77
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-73
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-41
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-32
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-59
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-45
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
 Score =  321 bits (825), Expect = e-106
 Identities = 97/413 (23%), Positives = 159/413 (38%), Gaps = 55/413 (13%)

Query: 23  IYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82
           +   G    GQ G      + + P  +               +    G  HT  ++  G 
Sbjct: 29  VLTLGQGDVGQLGLGENVMERKKPALVS---------IPEDVVQAEAGGMHTVCLSKSGQ 79

Query: 83  LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTS 142
           ++++G N+ G LG  T          K    E V  +S G   TAA+ +    DG     
Sbjct: 80  VYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD----DGR---- 131

Query: 143 RLWVWGQNQGSN----FPRLFWGAFTPNTI-----ICQVSCGSVHVVALSECGLLQAWGY 193
            +++WG  + +N           +  P  +     + +V+ G+ H+V L+  G L   G 
Sbjct: 132 -VFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGC 190

Query: 194 NEYGQLGRGITC-------EGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSEN 246
            E GQLGR           +GL+   V K        +    +     CG Y + A+S  
Sbjct: 191 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 250

Query: 247 GEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIF--IKDVACGGVHSCALTSKGAL 304
           G VY +GL +  QLG    +S     +P+ + +           + G  H+  + S+G  
Sbjct: 251 GHVYGFGLSNYHQLGTPGTES---CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307

Query: 305 YAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV-PNGVQLVACGHSHTLVYMRD 363
           Y+ G ++ G+LGLG                 ++IP L+     V  VACG S      +D
Sbjct: 308 YSLGRAEYGRLGLGEGAEE------------KSIPTLISRLPAVSSVACGASVGYAVTKD 355

Query: 364 GRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE---VRKLAAGGGHSAVLAD 413
           GR+  WG  +  Q    +   AW P  +     E   V  +++GG H+ +L  
Sbjct: 356 GRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.44
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.19
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.75
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 94.46
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 93.39
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.4
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 91.96
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 88.9
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 87.98
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 87.82
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 84.18
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 81.51
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-68  Score=530.30  Aligned_cols=370  Identities=24%  Similarity=0.448  Sum_probs=296.0

Q ss_pred             cccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEE
Q 011798            5 EIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLF   84 (477)
Q Consensus         5 ~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy   84 (477)
                      +++. ..+.+++|+++|+||+||+|..||||.+.. .....|.+++..       ...+|++|+||..|+++|+++|+||
T Consensus         5 ~~~~-~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~-------~~~~i~~i~~G~~~~~~l~~~G~v~   75 (389)
T 3kci_A            5 HHHS-SGRENLYFQGSGTIYGWGHNHRGQLGGIEG-AKVKVPTPCEAL-------ATLRPVQLIGGEQTLFAVTADGKLY   75 (389)
T ss_dssp             -----------------CEEEEEECTTSTTSSCSC-SEEEEEEECHHH-------HHTCEEEEEEETTEEEEEETTSCEE
T ss_pred             cccc-CcccceeECCCCeEEEeeCCCCccCCCCcC-ccccCCEecccc-------cCCceEEEEeCCCeEEEEcCCCcEE
Confidence            3444 446677999999999999999999997543 344566655421       4568999999999999999999999


Q ss_pred             EEeCCCCCcCCCCCCcCccccccccccccc--ceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCc-----
Q 011798           85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSE--FVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPR-----  157 (477)
Q Consensus        85 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~--~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~-----  157 (477)
                      +||.|.+||||.+.......|++++.+...  ++++|+||..|+++|++         +|+||+||.+..+|+..     
T Consensus        76 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~---------~G~v~~wG~n~~GqLG~g~~~~  146 (389)
T 3kci_A           76 ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS---------EGEVYSWGEAEDGKLGHGNRSP  146 (389)
T ss_dssp             EEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEET---------TSCEEEEECCGGGTTCSSSCCC
T ss_pred             EEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcC---------CCCEEEEeCCCCCcCCCCCCcc
Confidence            999999999999998888899999887765  44788999999999999         99999999998777632     


Q ss_pred             -eeec--CCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEe
Q 011798          158 -LFWG--AFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVS  234 (477)
Q Consensus       158 -~~~~--~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~  234 (477)
                       ..+.  ......+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+..+        ...+|++|+
T Consensus       147 ~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~--------~~~~v~~ia  217 (389)
T 3kci_A          147 CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED-QLKPKLVEAL--------QGHRVVDIA  217 (389)
T ss_dssp             EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGG--------TTSCEEEEE
T ss_pred             CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc-cccceEeccc--------CCCeEEEEE
Confidence             1111  122355899999999999999999999999999999999987633 2334444322        235899999


Q ss_pred             cCC--ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCC
Q 011798          235 CGE--YHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA  312 (477)
Q Consensus       235 ~G~--~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~  312 (477)
                      ||.  .|+++|+++|+||+||.|.+||||.+..   .....|.++..+.+.+|++|+||..|++||+++|+||+||.|.+
T Consensus       218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~  294 (389)
T 3kci_A          218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY  294 (389)
T ss_dssp             ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---CCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred             EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---CCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence            995  8999999999999999999999999864   34567899988888899999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecc
Q 011798          313 GQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVD  392 (477)
Q Consensus       313 gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~  392 (477)
                      ||||.+.......+.         .++. ....+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++|+
T Consensus       295 GqLG~g~~~~~~~P~---------~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~  364 (389)
T 3kci_A          295 HRLGHGSDDHVRRPR---------QVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA  364 (389)
T ss_dssp             GTTCSSSCCCEEEEE---------ECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             CCCCCCCCccccCCe---------Eecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEec
Confidence            999998755432111         1110 123579999999999999999999999999999999999999999999998


Q ss_pred             cccC-ceEEEEecCCceEEEecC
Q 011798          393 WCVG-EVRKLAAGGGHSAVLADA  414 (477)
Q Consensus       393 ~~~~-~i~~v~~G~~~t~~l~~~  414 (477)
                      .+.+ +|++|+||.+||++|+++
T Consensus       365 ~~~~~~v~~va~G~~ht~al~~~  387 (389)
T 3kci_A          365 ALQGKKVNRVACGSAHTLAWSTS  387 (389)
T ss_dssp             GGTTSCCCEEEEETTEEEEECC-
T ss_pred             ccCCCCEEEEEecCCcEEEEecC
Confidence            7654 899999999999999976
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-45
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-25
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-18
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-15
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 9e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 1e-45
 Identities = 90/402 (22%), Positives = 142/402 (35%), Gaps = 33/402 (8%)

Query: 23  IYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82
           +   G    GQ G      + + P  +               +    G  HT  ++  G 
Sbjct: 17  VLTLGQGDVGQLGLGENVMERKKPALVS---------IPEDVVQAEAGGMHTVCLSKSGQ 67

Query: 83  LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTS 142
           ++++G N+ G LG  T          K    E V  +S G   TAA+ +        S  
Sbjct: 68  VYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFR 127

Query: 143 RLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRG 202
                          +       +  + +V+ G+ H+V L+  G L   G  E GQLGR 
Sbjct: 128 DNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRV 187

Query: 203 ITC-------EGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLG 255
                     +GL+   V K        +    +     CG Y + A+S  G VY +GL 
Sbjct: 188 PELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLS 247

Query: 256 SVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQL 315
           +  QLG                           + G  H+  + S+G  Y+ G ++ G+L
Sbjct: 248 NYHQLGTPG-TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306

Query: 316 GLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSY 374
           GLG                 ++IP L+     V  VACG S      +DGR+  WG  + 
Sbjct: 307 GLGEG------------AEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTN 354

Query: 375 GQAANEKSTYAWYPSPVDWCVGE---VRKLAAGGGHSAVLAD 413
            Q    +   AW P  +     E   V  +++GG H+ +L  
Sbjct: 355 YQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.79
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.21
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 85.4
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-61  Score=477.85  Aligned_cols=369  Identities=25%  Similarity=0.391  Sum_probs=299.4

Q ss_pred             ccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCC
Q 011798           12 RPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEF   91 (477)
Q Consensus        12 ~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~   91 (477)
                      .|.++++++|+||+||.|.+||||.+........|.+++         ...+|++|+||..|++||+++|+||+||.|.+
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~---------~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~   76 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS---------IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDE   76 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEEC---------CSSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeC---------CCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCC
Confidence            456699999999999999999999987776677888886         44679999999999999999999999999999


Q ss_pred             CcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCC---------CceeecC
Q 011798           92 GQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNF---------PRLFWGA  162 (477)
Q Consensus        92 gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~---------~~~~~~~  162 (477)
                      ||||.+.......|.+.......+|++|+||..|++++++         +|.||+||.+...+.         .......
T Consensus        77 GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~---------~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~  147 (401)
T d1a12a_          77 GALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD---------DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQ  147 (401)
T ss_dssp             STTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEET---------TSCEEEEECEEETTEEEESSBBTBCEEEEEE
T ss_pred             CCCCcccccccccccccccccccceeeecccccceeeccc---------cccceeccccccccccccccCCccccceeee
Confidence            9999998887777777777778899999999999999999         999999998654332         1111122


Q ss_pred             CCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCC----------CeeeeccccccccCccCCceEE
Q 011798          163 FTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQG----------PRVIKGYAKFLDEAPELEKITQ  232 (477)
Q Consensus       163 ~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~i~~  232 (477)
                      .....+|++|+||..|+++++++|++|+||.|.++|||..........          |..+..   .........+|.+
T Consensus       148 ~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~i~~  224 (401)
T d1a12a_         148 VQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVML---KSRGSRGHVRFQD  224 (401)
T ss_dssp             ECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCC---BCSSCCSBCCEEE
T ss_pred             eccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeec---cccCCCCCceEEE
Confidence            334568999999999999999999999999999999997654322211          111110   0111223468999


Q ss_pred             EecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecC--CceEEEEEccCceEEEEecCCcEEEEeCC
Q 011798          233 VSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALD--GIFIKDVACGGVHSCALTSKGALYAWGGS  310 (477)
Q Consensus       233 i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~h~~~lt~~G~vy~wG~n  310 (477)
                      |+||..|+++|+++|+||.||.|.++++|......   ...+..+..+.  ...++.+++|..|+++|+++|+||+||.|
T Consensus       225 v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n  301 (401)
T d1a12a_         225 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES---CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA  301 (401)
T ss_dssp             EEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC---EEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred             EEecCCeEEEEecCCeEeeecccceeccccccccc---ceeccccccccccceeEEEEeeeccceeeeccCCCEEEeccc
Confidence            99999999999999999999999999999866432   23344433332  35699999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccccCCCCCCccccccceee-cCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCe
Q 011798          311 QAGQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPS  389 (477)
Q Consensus       311 ~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~  389 (477)
                      .+||||.+......            ..|..+ ...+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|+
T Consensus       302 ~~gqlG~g~~~~~~------------~~P~~i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~  369 (401)
T d1a12a_         302 EYGRLGLGEGAEEK------------SIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV  369 (401)
T ss_dssp             GGGTTCSCTTCCCE------------EEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEE
T ss_pred             ccCccCCCcccccc------------cCCEEcCCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCE
Confidence            99999998654431            222222 22579999999999999999999999999999999999999999999


Q ss_pred             eccccc--C-ceEEEEecCCceEEEecCCC
Q 011798          390 PVDWCV--G-EVRKLAAGGGHSAVLADACS  416 (477)
Q Consensus       390 ~v~~~~--~-~i~~v~~G~~~t~~l~~~~~  416 (477)
                      +|....  + +|.+|+||.+||++|++|++
T Consensus       370 ~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         370 EMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             ECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             EeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence            986442  2 79999999999999999863
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure