Citrus Sinensis ID: 011947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MTGWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR
cccEEEEEEEEcccccEEEEEccccccccEEEccccccccEEEEEEcccccccccccHHHHHcccccccEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEEEcccHHHccccHHHHHHHHHcccEEEEccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHcccEEEEEccccEEEEccccEEEccccEEEcccccHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHcccEEEEEccEEEEEcccccccccccccEEEEcccccccHHHHHHHHHHcccccEEEEcccccHHHHcHHHHHHHHHHHHcccEEEEEccEEEEEcccccccccccccccHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHcccc
ccEEEEEEEEccccccccHHHccccccHcccccccccccccccccccEEEccccccHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcccEEEEcccccEEEEEccccccccHHcccccEEEEccccHHHHHHHHHHcccccccEcEEEEccHHHHHcccHHHHHHHHHccccEEEccccccccEEEccccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEcccccEEEEccccccEcccEEEccEcHHHHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHccEEEEcccEEEEEccccccccccccEccEEEcccccccHHHHHHHHHHcEccEEEEccHHHHHccccHHHHHHHHHHHcccEEEEcccEEEEEccccccccEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHccccHHHHHHHHEEc
MTGWVIIIQFVQSGLQLQLAQLRSNqkhrklycnpserfpVRLLCRVLslypigfffslpslslsfqgttvvdnllSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEgcgglfplakqqtgEIELFLgnagtamrpLTAAVTAAggnlsyildgvprmrerpigDLVTGLKQlgadvdcilgtncppvringkgglpggkvklsGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGvfvehsdswdrFFIQggqkykspgnafvegdassasYFVAGAavtggtvtvegcgtsslqgDVKFAEVLEKMGAkvtwtensvtvtgpprdpygrkhlrAVDVNMNKMPDVAMTLAVVALFadgptairDVASWRVKETERMIAICTELRKLgatveegpdycvitppeklKVAAIDTYDDHRMAMAFSLAAcadvpvtikdpsctrktfpdyfDVLDSVTKR
MTGWVIIIQFVQSGLQLQLAQLRSNQKhrklycnpserfPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMgakvtwtensvtvtgpprdpygrKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTElrklgatveegpdycvitppeKLKVAAIDTYDDHRMAMAFSLAACADVPVTikdpsctrktfpdyfdvldsvtkr
MTGWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGfffslpslslsfQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINgkgglpggkvklsgklssQYltallmaaplalGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFvagaavtggtvtvEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR
**GWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG****PYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVL******
**GWVIIIQFVQS**********************SERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK*
MTGWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR
MTGWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR
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MTGWVIIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
P05466520 3-phosphoshikimate 1-carb yes no 0.860 0.784 0.843 0.0
P17688516 3-phosphoshikimate 1-carb N/A no 0.860 0.790 0.855 0.0
P11043516 3-phosphoshikimate 1-carb N/A no 0.860 0.790 0.855 0.0
P10748520 3-phosphoshikimate 1-carb N/A no 0.860 0.784 0.848 0.0
P23981518 3-phosphoshikimate 1-carb N/A no 0.860 0.787 0.848 0.0
P23281338 3-phosphoshikimate 1-carb N/A no 0.713 1.0 0.866 1e-165
C3LN54426 3-phosphoshikimate 1-carb yes no 0.822 0.915 0.551 1e-120
Q9KRB0426 3-phosphoshikimate 1-carb yes no 0.822 0.915 0.551 1e-120
A1STZ0428 3-phosphoshikimate 1-carb yes no 0.827 0.915 0.539 1e-120
A7MES7428 3-phosphoshikimate 1-carb yes no 0.822 0.911 0.538 1e-119
>sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3 Back     alignment and function desciption
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/408 (84%), Positives = 377/408 (92%)

Query: 67  QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
           +GTTVVDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+
Sbjct: 113 EGTTVVDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELY 172

Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
           LGNAGTAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCP
Sbjct: 173 LGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCP 232

Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
           PVR+N  GGLPGGKVKLSG +SSQYLTALLM+APLALG+VEIEI+DKLISVPYVEMTLKL
Sbjct: 233 PVRVNANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKL 292

Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
           MERFGV VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF+AGAA+TG TVTVEGCG
Sbjct: 293 MERFGVSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCG 352

Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
           T+SLQGDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTL
Sbjct: 353 TTSLQGDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTL 412

Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
           AVVALFADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP+K+K A 
Sbjct: 413 AVVALFADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPKKVKTAE 472

Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474
           IDTYDDHRMAMAFSLAACADVP+TI DP CTRKTFPDYF VL+ +TK 
Sbjct: 473 IDTYDDHRMAMAFSLAACADVPITINDPGCTRKTFPDYFQVLERITKH 520

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9
>sp|P17688|AROA_BRANA 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1 Back     alignment and function description
>sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1 Back     alignment and function description
>sp|P10748|AROA_SOLLC 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P23981|AROA1_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1 Back     alignment and function description
>sp|P23281|AROA2_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1 Back     alignment and function description
>sp|C3LN54|AROA_VIBCM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|Q9KRB0|AROA_VIBCH 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=aroA PE=1 SV=1 Back     alignment and function description
>sp|A1STZ0|AROA_PSYIN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Psychromonas ingrahamii (strain 37) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|A7MES7|AROA_CROS8 3-phosphoshikimate 1-carboxyvinyltransferase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=aroA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
48526086523 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.780 0.860 0.0
350274028523 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.780 0.857 0.0
145977431446 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.914 0.860 0.0
15225450520 3-phosphoshikimate 1-carboxyvinyltransfe 0.860 0.784 0.843 0.0
76782198520 putative 5-enolpyruvylshikimate 3-phosph 0.860 0.784 0.860 0.0
145977439446 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.914 0.857 0.0
63334366446 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.914 0.855 0.0
145977441446 5-enol-pyruvylshikimate-phosphate syntha 0.860 0.914 0.852 0.0
295790520 EPSP [Arabidopsis thaliana] 0.860 0.784 0.838 0.0
257228991518 5-enolpyruvylshikimate-3-phosphate synth 0.860 0.787 0.850 0.0
>gi|48526086|gb|AAT45244.1| 5-enol-pyruvylshikimate-phosphate synthase [Conyza canadensis] Back     alignment and taxonomy information
 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/408 (86%), Positives = 382/408 (93%)

Query: 67  QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
           +GTTVVDNLL+S+D+H+ML AL+ LGLNVEE+ A+KRAIVEGCGG+FP+ K+   EI+LF
Sbjct: 116 EGTTVVDNLLNSDDVHYMLGALRALGLNVEENSAIKRAIVEGCGGVFPVGKEAKDEIQLF 175

Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
           LGNAGTAMRPLTAAVTAAGGN SYILDGVPRMRERPIGDLVTGLKQLGA+VDC LGTNCP
Sbjct: 176 LGNAGTAMRPLTAAVTAAGGNSSYILDGVPRMRERPIGDLVTGLKQLGANVDCSLGTNCP 235

Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
           PVR+ G GGLPGGKVKLSG +SSQYLT+LLMAAPLALG+VEIEI+DKLISVPYVEMTLKL
Sbjct: 236 PVRVVGSGGLPGGKVKLSGSISSQYLTSLLMAAPLALGDVEIEIVDKLISVPYVEMTLKL 295

Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
           MERFGV VEHSD+WDRF ++GGQKYKSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCG
Sbjct: 296 MERFGVSVEHSDTWDRFHVRGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCG 355

Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
           TSSLQGDVKFAEVL +MGA+VTWTENSVTV GPPR+  GR HLR VDVNMNKMPDVAMTL
Sbjct: 356 TSSLQGDVKFAEVLGQMGAEVTWTENSVTVKGPPRNSSGRGHLRPVDVNMNKMPDVAMTL 415

Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
           AVVAL+ADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL V A
Sbjct: 416 AVVALYADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTA 475

Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474
           IDTYDDHRMAMAFSLAACA+VPVTIKDP CTRKTFPDYF+VL+  TK 
Sbjct: 476 IDTYDDHRMAMAFSLAACAEVPVTIKDPGCTRKTFPDYFEVLERYTKH 523

Source: Conyza canadensis

Species: Conyza canadensis

Genus: Conyza

Family: Asteraceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|350274028|emb|CCB84815.1| 5-enol-pyruvylshikimate-phosphate synthase [Conyza canadensis] Back     alignment and taxonomy information
>gi|145977431|gb|ABQ00957.1| 5-enol-pyruvylshikimate-phosphate synthase 2A [Conyza bonariensis] Back     alignment and taxonomy information
>gi|15225450|ref|NP_182055.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] gi|166898083|sp|P05466.3|AROA_ARATH RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|2583124|gb|AAB82633.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|63003818|gb|AAY25438.1| At2g45300 [Arabidopsis thaliana] gi|110742505|dbj|BAE99170.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|330255442|gb|AEC10536.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|76782198|gb|ABA54869.1| putative 5-enolpyruvylshikimate 3-phosphate synthase [Fagus sylvatica] Back     alignment and taxonomy information
>gi|145977439|gb|ABQ00961.1| 5-enol-pyruvylshikimate-phosphate synthase 3A [Conyza bonariensis] Back     alignment and taxonomy information
>gi|63334366|gb|AAY40474.1| 5-enol-pyruvylshikimate-phosphate synthase [Conyza sumatrensis] Back     alignment and taxonomy information
>gi|145977441|gb|ABQ00962.1| 5-enol-pyruvylshikimate-phosphate synthase 3B [Conyza bonariensis] Back     alignment and taxonomy information
>gi|295790|emb|CAA29828.1| EPSP [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|257228991|gb|ACV53022.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2050812520 AT2G45300 [Arabidopsis thalian 0.858 0.782 0.759 1.4e-167
TAIR|locus:2028544521 AT1G48860 [Arabidopsis thalian 0.858 0.781 0.749 2.7e-164
UNIPROTKB|Q9KRB0426 aroA "3-phosphoshikimate 1-car 0.808 0.899 0.501 1.6e-93
TIGR_CMR|VC_1732426 VC_1732 "3-phosphoshikimate 1- 0.808 0.899 0.501 1.6e-93
TIGR_CMR|CPS_2333426 CPS_2333 "3-phosphoshikimate 1 0.820 0.913 0.476 9.6e-89
TIGR_CMR|SO_2404426 SO_2404 "3-phosphoshikimate 1- 0.801 0.892 0.482 1.1e-87
UNIPROTKB|P0A6D3427 aroA "3-phosphoshikimate-1-car 0.772 0.857 0.456 6e-80
CGD|CAL0004346 1551 ARO1 [Candida albicans (taxid: 0.831 0.254 0.371 4.7e-50
SGD|S000002534 1588 ARO1 "Pentafunctional arom pro 0.776 0.231 0.349 1.9e-49
ASPGD|ASPL0000055969 1583 aromA [Emericella nidulans (ta 0.829 0.248 0.343 9.6e-44
TAIR|locus:2050812 AT2G45300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
 Identities = 309/407 (75%), Positives = 338/407 (83%)

Query:    67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
             +GTTVVDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+
Sbjct:   113 EGTTVVDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELY 172

Query:   127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
             LGNAGTAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCP
Sbjct:   173 LGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCP 232

Query:   187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
             PVR+N                  QY            G+VEIEI+DKLISVPYVEMTLKL
Sbjct:   233 PVRVNANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKL 292

Query:   247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
             MERFGV VEHSDSWDRFF++GGQKYKSPGNA+VEGDASSASYF             EGCG
Sbjct:   293 MERFGVSVEHSDSWDRFFVKGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCG 352

Query:   307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
             T+SLQGDVKFAEVLEKMG KV+WTENSVTVTGPPRD +G +HLRA+DVNMNKMPDVAMTL
Sbjct:   353 TTSLQGDVKFAEVLEKMGCKVSWTENSVTVTGPPRDAFGMRHLRAIDVNMNKMPDVAMTL 412

Query:   367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
             AVVALFADGPT IRDVASWRVKETERMIAICTELRKLGATVEEG DYCVITPP+K+K A 
Sbjct:   413 AVVALFADGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDYCVITPPKKVKTAE 472

Query:   427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
             IDTYDDHRMAMAFSLAACADVP+TI DP CTRKTFPDYF VL+ +TK
Sbjct:   473 IDTYDDHRMAMAFSLAACADVPITINDPGCTRKTFPDYFQVLERITK 519
GO:0003824 "catalytic activity" evidence=IEA
GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA;TAS
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=TAS
GO:0009423 "chorismate biosynthetic process" evidence=IMP
GO:0018920 "glyphosate metabolic process" evidence=IMP
TAIR|locus:2028544 AT1G48860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB0 aroA "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1732 VC_1732 "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2333 CPS_2333 "3-phosphoshikimate 1-carboxyvinyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2404 SO_2404 "3-phosphoshikimate 1-carboxyvinyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6D3 aroA "3-phosphoshikimate-1-carboxyvinyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5BBP9AROA_SALPK2, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
B7VM38AROA_VIBSL2, ., 5, ., 1, ., 1, 90.53360.81220.9037yesno
B4T142AROA_SALNS2, ., 5, ., 1, ., 1, 90.52610.81010.8992yesno
B5QYQ8AROA_SALEP2, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
A9N7V6AROA_SALPB2, ., 5, ., 1, ., 1, 90.52610.81010.8992yesno
P23281AROA2_TOBAC2, ., 5, ., 1, ., 1, 90.86680.71301.0N/Ano
Q7N6D5AROA_PHOLL2, ., 5, ., 1, ., 1, 90.54160.82480.9135yesno
B5XY87AROA_KLEP32, ., 5, ., 1, ., 1, 90.53440.82060.9110yesno
P05466AROA_ARATH2, ., 5, ., 1, ., 1, 90.84310.86070.7846yesno
B4TD38AROA_SALHS2, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
A6T701AROA_KLEP72, ., 5, ., 1, ., 1, 90.53690.82060.9110yesno
P22299AROA_SALGL2, ., 5, ., 1, ., 1, 90.52860.81010.8992N/Ano
Q66CI8AROA_YERPS2, ., 5, ., 1, ., 1, 90.5350.80800.8948yesno
A7FJW9AROA_YERP32, ., 5, ., 1, ., 1, 90.5350.80800.8948yesno
B5R8J5AROA_SALG22, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
A5F7G5AROA_VIBC32, ., 5, ., 1, ., 1, 90.54920.82270.9154yesno
B1JRD9AROA_YERPY2, ., 5, ., 1, ., 1, 90.5350.80800.8948yesno
Q9KRB0AROA_VIBCH2, ., 5, ., 1, ., 1, 90.55170.82270.9154yesno
A3D4A6AROA_SHEB52, ., 5, ., 1, ., 1, 90.54380.80800.8990yesno
Q5PGG5AROA_SALPA2, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
P10748AROA_SOLLC2, ., 5, ., 1, ., 1, 90.84800.86070.7846N/Ano
B4TRT9AROA_SALSV2, ., 5, ., 1, ., 1, 90.52610.81010.8992yesno
Q60112AROA_YERPE2, ., 5, ., 1, ., 1, 90.53250.80800.8948yesno
A4TN18AROA_YERPP2, ., 5, ., 1, ., 1, 90.53250.80800.8948yesno
Q1CA73AROA_YERPA2, ., 5, ., 1, ., 1, 90.53250.80800.8948yesno
B2KA23AROA_YERPB2, ., 5, ., 1, ., 1, 90.5350.80800.8948yesno
A6WNN0AROA_SHEB82, ., 5, ., 1, ., 1, 90.54380.80800.8990yesno
C3LN54AROA_VIBCM2, ., 5, ., 1, ., 1, 90.55170.82270.9154yesno
A1STZ0AROA_PSYIN2, ., 5, ., 1, ., 1, 90.53940.82700.9158yesno
A4Y732AROA_SHEPC2, ., 5, ., 1, ., 1, 90.54380.80800.8990yesno
Q87QX9AROA_VIBPA2, ., 5, ., 1, ., 1, 90.53040.83330.9272yesno
Q6LPE1AROA_PHOPR2, ., 5, ., 1, ., 1, 90.53800.82480.9135yesno
Q1CGG5AROA_YERPN2, ., 5, ., 1, ., 1, 90.53250.80800.8948yesno
B5F161AROA_SALA42, ., 5, ., 1, ., 1, 90.52860.81010.8992yesno
A7MES7AROA_CROS82, ., 5, ., 1, ., 1, 90.53800.82270.9112yesno
A6Q7Q0AROA_SULNB2, ., 5, ., 1, ., 1, 90.53560.82060.9110yesno
Q57R23AROA_SALCH2, ., 5, ., 1, ., 1, 90.52610.81010.8992yesno
P11043AROA_PETHY2, ., 5, ., 1, ., 1, 90.85530.86070.7906N/Ano
P23981AROA1_TOBAC2, ., 5, ., 1, ., 1, 90.84800.86070.7876N/Ano
P17688AROA_BRANA2, ., 5, ., 1, ., 1, 90.85530.86070.7906N/Ano
P19688AROA_YERE82, ., 5, ., 1, ., 1, 90.51700.86280.9556yesno
A9R7I2AROA_YERPG2, ., 5, ., 1, ., 1, 90.53250.80800.8948yesno
A4W8S8AROA_ENT382, ., 5, ., 1, ., 1, 90.53940.82060.9110yesno
A8GCH1AROA_SERP52, ., 5, ., 1, ., 1, 90.53070.82270.9112yesno
P19786AROA_SALTI2, ., 5, ., 1, ., 1, 90.52860.81010.8992N/Ano
C0PXU4AROA_SALPC2, ., 5, ., 1, ., 1, 90.52610.81010.8992yesno
A8AIH5AROA_CITK82, ., 5, ., 1, ., 1, 90.52340.81850.9086yesno
Q482G5AROA_COLP32, ., 5, ., 1, ., 1, 90.53200.82270.9154yesno
Q7MJ45AROA_VIBVY2, ., 5, ., 1, ., 1, 90.53070.82480.9135yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.7LOW CONFIDENCE prediction!
4th Layer2.5.1.190.991
3rd Layer2.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT2G45300
3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase; encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis (520 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
EMB1144
EMB1144 (embryo defective 1144); chorismate synthase; embryo defective 1144 (EMB1144); FUNCTION [...] (436 aa)
• •• •• 0.999
AT5G66120
3-dehydroquinate synthase, putative; 3-dehydroquinate synthase, putative; FUNCTIONS IN- 3-dehyd [...] (442 aa)
•• • •• 0.975
AT4G39540
shikimate kinase family protein; shikimate kinase family protein; FUNCTIONS IN- shikimate kinas [...] (300 aa)
•    •• 0.971
AT2G21940
shikimate kinase, putative; shikimate kinase, putative; FUNCTIONS IN- shikimate kinase activity [...] (304 aa)
•    •• 0.967
MEE32
MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / [...] (603 aa)
•••  •• 0.917
AT5G17990.1-P
TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase; Encodes the tryptopha [...] (444 aa)
•  •  • 0.915
CSR1
CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase; [...] (670 aa)
      • 0.878
TRPA
tryptophan synthase, alpha subunit, putative; tryptophan synthase, alpha subunit, putative; FUN [...] (275 aa)
•     • 0.847
ATKDSA2
ATKDSA2; 3-deoxy-8-phosphooctulonate synthase; Encodes a protein with putative 3-deoxy-D-manno- [...] (291 aa)
•     • 0.769
AT5G48220
indole-3-glycerol phosphate synthase, putative; indole-3-glycerol phosphate synthase, putative; [...] (379 aa)
•     • 0.711

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
PLN02338443 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvi 0.0
PRK11860 661 PRK11860, PRK11860, bifunctional 3-phosphoshikimat 1e-173
TIGR01356409 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyl 1e-165
PRK02427435 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvi 1e-164
cd01556409 cd01556, EPSP_synthase, EPSP synthase domain 1e-163
pfam00275415 pfam00275, EPSP_synthase, EPSP synthase (3-phospho 1e-151
COG0128428 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate 1e-146
PRK11861673 PRK11861, PRK11861, bifunctional prephenate dehydr 1e-126
cd01554408 cd01554, EPT-like, Enol pyruvate transferases fami 1e-101
cd01553211 cd01553, EPT_RTPC-like, This domain family include 4e-27
PRK14806735 PRK14806, PRK14806, bifunctional cyclohexadienyl d 1e-22
cd01555400 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyru 2e-13
TIGR01072416 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy 2e-10
COG0766421 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl 3e-09
PRK09369417 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carb 1e-08
TIGR01072416 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy 2e-05
PRK12830417 PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carb 6e-05
COG0766 421 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl 1e-04
cd01555 400 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyru 0.002
COG0766421 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl 0.002
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information 
 Score =  833 bits (2153), Expect = 0.0
 Identities = 350/407 (85%), Positives = 376/407 (92%)

Query: 67  QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
           +GTTVVDNLL S+DI +ML ALK LGLNVEED    RA+VEGCGG FP++     ++ELF
Sbjct: 36  EGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELF 95

Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
           LGNAGTAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCP
Sbjct: 96  LGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCP 155

Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
           PVR+N  GGLPGGKVKLSG +SSQYLTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKL
Sbjct: 156 PVRVNAAGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKL 215

Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
           MERFGV VEHSDSWDRFFI+GGQKYKSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCG
Sbjct: 216 MERFGVSVEHSDSWDRFFIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCG 275

Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
           T+SLQGDVKFAEVLEKMGAKV WTENSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTL
Sbjct: 276 TTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTL 335

Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
           AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC+ITPP+KLK A 
Sbjct: 336 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPKKLKPAE 395

Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
           IDTYDDHRMAMAFSLAAC DVPVTI DP CTRKTFP YFDVL+S+ K
Sbjct: 396 IDTYDDHRMAMAFSLAACGDVPVTINDPGCTRKTFPTYFDVLESIAK 442

Length = 443
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain Back     alignment and domain information
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Back     alignment and domain information
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
COG0128428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 100.0
PLN02338443 3-phosphoshikimate 1-carboxyvinyltransferase 100.0
PRK11861673 bifunctional prephenate dehydrogenase/3-phosphoshi 100.0
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 100.0
PF00275419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 100.0
TIGR01356409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 100.0
cd01556409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 100.0
cd01554408 EPT-like Enol pyruvate transferases family include 100.0
PRK02427435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 100.0
PRK14806735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 100.0
cd01555400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 100.0
COG0766421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 100.0
PRK09369417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
TIGR01072416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 100.0
PRK12830417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
KOG0692595 consensus Pentafunctional AROM protein [Amino acid 100.0
COG0128428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 100.0
TIGR01356409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 100.0
PRK02427435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 100.0
PLN02338443 3-phosphoshikimate 1-carboxyvinyltransferase 100.0
PRK11861673 bifunctional prephenate dehydrogenase/3-phosphoshi 100.0
PF00275419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 100.0
PRK09369417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 100.0
PRK12830417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
cd01556409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 100.0
cd01554408 EPT-like Enol pyruvate transferases family include 100.0
cd01555400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 100.0
TIGR01072416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 100.0
PRK14806735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 100.0
COG0766421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 100.0
KOG0692595 consensus Pentafunctional AROM protein [Amino acid 99.96
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.94
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.71
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 95.85
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 93.29
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 90.55
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 90.16
cd00874 326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 89.33
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 88.75
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 88.59
TIGR03399 326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 88.5
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 87.83
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 87.56
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 84.04
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 83.44
cd00875341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 82.79
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9e-80  Score=613.30  Aligned_cols=415  Identities=41%  Similarity=0.629  Sum_probs=368.7

Q ss_pred             ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947           22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM  101 (474)
Q Consensus        22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~  101 (474)
                      .++...+++|.+|+||++++|+++                +|+|++|+++|+|.+.++|+..+++++++||++|+..+  
T Consensus         8 ~~~~~l~G~v~~PgSKSishRali----------------laaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--   69 (428)
T COG0128           8 VKPSPLRGTVRAPGSKSISHRALL----------------LAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--   69 (428)
T ss_pred             ccCCccceEEECCCCccHHHHHHH----------------HHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--
Confidence            356668999999999999999999                89999999999999999999999999999999999855  


Q ss_pred             ceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC
Q 011947          102 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL  181 (474)
Q Consensus       102 ~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~  181 (474)
                      ..++|+|.++.+..+     ...+++|||||++|||++++++ ..++.++++|+.+|.+|||.+++++|+++|++++..+
T Consensus        70 ~~~~v~g~g~~~~~~-----~~~l~~GnSGTt~R~l~glla~-~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~  143 (428)
T COG0128          70 DTLVVRGTGGELKEP-----PAVLDCGNSGTTLRLLTGLLAL-GSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGRE  143 (428)
T ss_pred             CEEEEeCCCCCcCCC-----CceeeeccchhHHHHHHHHHhc-CCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecC
Confidence            579999986433333     3589999999999999998875 2458899999999999999999999999999999877


Q ss_pred             CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947          182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD  261 (474)
Q Consensus       182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~  261 (474)
                      +++++|++|+|+  +..+.++++++.||||++++|++|++..+..++.......|++|+++|++||++||++|+.++.  
T Consensus       144 ~~~~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--  219 (428)
T COG0128         144 GEGYLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--  219 (428)
T ss_pred             CCCcCCEEEECC--CCCceEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--
Confidence            667899999996  6788999999999999999999888876333333333467899999999999999999998864  


Q ss_pred             EEEEeCCCcccCCcceeecCCchhhHHHHHHHhcc-CCe-EEEeccCCCCccchhHHHHHHHHcCCEEEEecCeE-EEeC
Q 011947          262 RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTG  338 (474)
Q Consensus       262 ~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~-~g~-~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i-~i~g  338 (474)
                      .+.|++++++. +.++.+|+|+|+|+||+++++++ +.+ +.++++..+  +.|..+++.|++||++|++.++.. +|.+
T Consensus       220 ~~~i~~g~~~~-~~~~~VpgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~  296 (428)
T COG0128         220 RFYIPGGQKLT-PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRG  296 (428)
T ss_pred             EEEECCCcccc-CceEEcCCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEee
Confidence            79999887765 88999999999999999999998 555 777777542  345788999999999999998884 8887


Q ss_pred             CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeC
Q 011947          339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITP  418 (474)
Q Consensus       339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g  418 (474)
                      ..       .|+|++||..+.||.+|+++++|++|+|+|+|+|++++|+|||||+..+.++|++||+++++.+|+|.|+|
T Consensus       297 ~~-------~l~gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g  369 (428)
T COG0128         297 SG-------ELKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITG  369 (428)
T ss_pred             cC-------CccCeEeCcccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEEEEC
Confidence            52       69999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccce-eecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcccC
Q 011947          419 PEKLKVAA-IDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR  474 (474)
Q Consensus       419 ~~~l~~~~-v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~~  474 (474)
                      +.+++|+. +++|+||||||+|+++++. .++++|+|++|++||||+||++|.+||++
T Consensus       370 ~~~l~g~~~v~s~~DHRiaMa~aia~l~~~~~v~I~~~~~v~kSfP~F~~~l~~l~~~  427 (428)
T COG0128         370 GTKLKGAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGAR  427 (428)
T ss_pred             CCCCCCCccccCcCcHHHHHHHHHHHhhcCCCEEEcCccceeccCchHHHHHHHhhCC
Confidence            87899985 9999999999999999974 55799999999999999999999999975

>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3nvs_A450 1.02 Angstrom Resolution Crystal Structure Of 3-Pho 1e-103
1g6s_A427 Structure Of Epsp Synthase Liganded With Shikimate- 8e-96
1eps_A427 Structure And Topological Symmetry Of The Glyphosph 1e-95
3fjx_A427 E. Coli Epsp Synthase (T97i) Liganded With S3p Leng 4e-95
1mi4_A427 Glyphosate Insensitive G96a Mutant Epsp Synthase Li 4e-95
2qfs_A427 E.coli Epsp Synthase Pro101ser Liganded With S3p Le 9e-95
2qfq_A427 E. Coli Epsp Synthase Pro101leu Liganded With S3p L 2e-94
3fk0_A427 E. Coli Epsp Synthase (Tips Mutation) Liganded With 4e-94
1q36_A427 Epsp Synthase (Asp313ala) Liganded With Tetrahedral 3e-91
3ti2_A228 1.90 Angstrom Resolution Crystal Structure Of N-Ter 2e-38
1p88_A216 Substrate-Induced Structural Changes To The Isolate 4e-31
3roi_A441 2.20 Angstrom Resolution Structure Of 3-Phosphoshik 3e-24
4gfp_A462 2.7 Angstrom Resolution Structure Of 3-Phosphoshiki 4e-24
3tr1_A441 Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltra 2e-20
2bjb_A462 Mycobacterium Tuberculosis Epsp Synthase In Unligan 1e-19
2o0b_A450 Mycobacterium Tuberculosis Epsp Synthase In Complex 2e-19
1rf4_A427 Structural Studies Of Streptococcus Pneumoniae Epsp 5e-18
3rmt_A455 Crystal Structure Of Putative 5-Enolpyruvoylshikima 1e-17
2pqd_A445 A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te 2e-06
2ggd_A455 Cp4 Epsp Synthase Ala100gly Liganded With S3p And G 2e-06
2gg4_A455 Cp4 Epsp Synthase (Unliganded) Length = 455 2e-06
2pqb_A445 Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed 2e-06
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate Length = 450 Back     alignment and structure 
Iteration: 1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/406 (49%), Positives = 250/406 (61%), Gaps = 16/406 (3%)
Query: 68  GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFL 127
           GTT + NLL S+DI HML+AL KLG+N           VEG G  F      T  +ELFL
Sbjct: 61  GTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFL 116
Query: 128 GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPP 187
           GNAGTAMRPL AA+    G+  Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP
Sbjct: 117 GNAGTAMRPLAAALCLGQGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPP 174
Query: 188 VRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLM 247
           +RI                   Q+            G V I+I+ +L+S PY+++TL +M
Sbjct: 175 LRIQGTGLQAGTVTIDGSISS-QFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIM 233
Query: 248 ERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGT 307
           E+FGV V + D +  F I  GQ Y SPG   VEGDASSASYF              G G 
Sbjct: 234 EQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGK 292
Query: 308 SSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLA 367
           +S+QGD++FA+ LEKMGA++ W ++ V           R  L AVD++ N +PD AMT+A
Sbjct: 293 NSIQGDIQFADALEKMGAQIEWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIA 344
Query: 368 VVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAI 427
             ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL  AAI
Sbjct: 345 TTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAI 404
Query: 428 DTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
           DTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD    +++
Sbjct: 405 DTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 450
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3- Phosphate And Glyphosate Length = 427 Back     alignment and structure
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate 5-enol- Pyruvylshikimate-3-phosphate Synthase: A Distinctive Protein Fold Length = 427 Back     alignment and structure
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded With Shikimate-3-Phosphate Length = 427 Back     alignment and structure
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p Length = 427 Back     alignment and structure
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p Length = 427 Back     alignment and structure
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral Reaction Intermediate Length = 427 Back     alignment and structure
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae Length = 228 Back     alignment and structure
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N- Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate Synthase Length = 216 Back     alignment and structure
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In A Second Conformational State Length = 462 Back     alignment and structure
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded State Length = 462 Back     alignment and structure
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With S3p (Partially Photolyzed) Length = 450 Back     alignment and structure
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase, Tetrahedral Intermediate Bound State Length = 427 Back     alignment and structure
>pdb|3RMT|A Chain A, Crystal Structure Of Putative 5-Enolpyruvoylshikimate-3-Phosphate Synthase From Bacillus Halodurans C-125 Length = 455 Back     alignment and structure
>pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 Back     alignment and structure
>pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 Back     alignment and structure
>pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 Back     alignment and structure
>pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 0.0
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 0.0
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 1e-71
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 7e-65
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 3e-61
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 2e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 5e-08
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 4e-06
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 1e-04
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 1e-05
4fqd_A479 NIKO protein; beta/alpha inverse barrel, enolpyruv 4e-05
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Length = 450 Back     alignment and structure
 Score =  589 bits (1522), Expect = 0.0
 Identities = 222/407 (54%), Positives = 277/407 (68%), Gaps = 16/407 (3%)

Query: 67  QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
            GTT + NLL S+DI HML+AL KLG+N           VEG G  F         +ELF
Sbjct: 60  SGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELF 115

Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
           LGNAGTAMRPL AA+    G+  Y+L G PRM+ERPIG LV  L+Q GA ++ +   N P
Sbjct: 116 LGNAGTAMRPLAAALCLGQGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFP 173

Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
           P+RI G G L  G V + G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +
Sbjct: 174 PLRIQGTG-LQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHI 232

Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
           ME+FGV V + D +  F I  GQ Y SPG   VEGDASSASYF+A AA+ GG V V G G
Sbjct: 233 MEQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIG 291

Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
            +S+QGD++FA+ LEKMGA++ W ++ V              L AVD++ N +PD AMT+
Sbjct: 292 KNSIQGDIQFADALEKMGAQIEWGDDYVIARRGE--------LNAVDLDFNHIPDAAMTI 343

Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
           A  ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL  AA
Sbjct: 344 ATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAA 403

Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
           IDTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD    +++
Sbjct: 404 IDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 450
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Length = 455 Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 3tr1_A Length = 441 Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Length = 419 Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Length = 425 Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Length = 425 Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Length = 454 Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Length = 479 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 100.0
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 100.0
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 100.0
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 100.0
4fqd_A479 NIKO protein; beta/alpha inverse barrel, enolpyruv 100.0
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 100.0
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 100.0
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 100.0
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 100.0
4fqd_A479 NIKO protein; beta/alpha inverse barrel, enolpyruv 100.0
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 100.0
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 100.0
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 91.55
3tut_A 358 RNA 3'-terminal phosphate cyclase; cyclase family, 91.23
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 86.11
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
Probab=100.00  E-value=1.2e-75  Score=603.41  Aligned_cols=409  Identities=29%  Similarity=0.422  Sum_probs=368.2

Q ss_pred             ccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCC----CeeEEecCCCCHhHHHHHHHHHHcCCEEEEeC
Q 011947           24 SNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQ----GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF   99 (474)
Q Consensus        24 ~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~----g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~   99 (474)
                      +..++++|.++.||++++|+|+                +++|++    |+++|+|.+.+||+..++++|++||++|++++
T Consensus        10 ~~~l~G~v~vpgsKs~s~R~l~----------------~aaLa~~~~~g~~~i~~~l~~~D~~~~~~~L~~lGa~i~~~~   73 (450)
T 2o0b_A           10 PTPVRATVTVPGSKSQTNRALV----------------LAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVG   73 (450)
T ss_dssp             SSCCEEEECCCBCHHHHHHHHH----------------HHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSS
T ss_pred             CCCeEEEEEccCcHHHHHHHHH----------------HHHhcCCCCCCeEEEecCCCchHHHHHHHHHHHcCCEEEEeC
Confidence            4567899999999999999998                777889    99999999999999999999999999998643


Q ss_pred             CcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEe
Q 011947          100 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDC  179 (474)
Q Consensus       100 ~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~  179 (474)
                        .+++|+|.++.+..       ..+++++||+++|||.++++.  .+..+.++|++++.+||+..++++|++||++|+.
T Consensus        74 --~~l~I~g~~~~l~~-------~~i~~g~sgts~R~l~~lla~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~  142 (450)
T 2o0b_A           74 --SELTVSGRIEPGPG-------ARVDCGLAGTVLRFVPPLAAL--GSVPVTFDGDQQARGRPIAPLLDALRELGVAVDG  142 (450)
T ss_dssp             --SCEEEESCCCCCTT-------CEEECTTCHHHHHHHHHHHTT--SSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEEC
T ss_pred             --CEEEEECCCCCcCc-------eeeeeccchhHHHHHHHHHhc--CCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEc
Confidence              38999986432332       378999999999999998764  5778999999999999999999999999999963


Q ss_pred             eCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccC-CCCchhHHHHHHHHHHcCCEEEEeC
Q 011947          180 ILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDK-LISVPYVEMTLKLMERFGVFVEHSD  258 (474)
Q Consensus       180 ~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~-~~s~~~~~~~~~~L~~~G~~i~~~~  258 (474)
                         + +.|++|++++++++.+|++++|+|+||++++||||+++.++++|++.+. ..++||+++++++|++||++|+..+
T Consensus       143 ---~-~~p~~i~g~~~l~g~~i~i~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~  218 (450)
T 2o0b_A          143 ---T-GLPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST  218 (450)
T ss_dssp             ---S-SSSEEEECCSCCCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCS
T ss_pred             ---C-ceeEEEEecCCCcCcEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecC
Confidence               2 4689999844699999999999999999999999999988899987643 4688999999999999999998654


Q ss_pred             ceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeC
Q 011947          259 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG  338 (474)
Q Consensus       259 ~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g  338 (474)
                      . +.|+|++ ++|+ +.++.+++|+++++||++++++++|+++|+|+..+++|+|..++++|++||++|++.+|.++|++
T Consensus       219 ~-~~i~I~g-~~l~-g~~~~v~~D~s~A~~~laaaa~~~g~v~i~~v~~~~~q~~~~i~~~L~~mGa~i~~~~d~i~v~~  295 (450)
T 2o0b_A          219 P-NRWQVRP-GPVA-ARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRG  295 (450)
T ss_dssp             T-TEEEECC-CCCC-CCCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEEC
T ss_pred             C-cEEEEEC-CCCc-CceEEcCCCHHHHHHHHHHHHhcCCeEEECCCCcccccchHHHHHHHHHcCCeEEEcCCEEEEec
Confidence            2 3789987 5776 77899999999999999999999999999999999999887899999999999999999999987


Q ss_pred             CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCC--CCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEE
Q 011947          339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD--GPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI  416 (474)
Q Consensus       339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~--g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I  416 (474)
                      ..       +++|++++++++||++|+|++++++++  |+++|+|++++|+|||||++.|+++|++||+++++.+|+++|
T Consensus       296 ~~-------~l~g~~i~~~~~~D~~p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~~~~d~~~I  368 (450)
T 2o0b_A          296 PT-------GYDGFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVI  368 (450)
T ss_dssp             CS-------CCCCCEEECTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEE
T ss_pred             CC-------CcceeEEeCCCCHHHHHHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEEEECCEEEE
Confidence            52       589999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             eCCCCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhc-ccC
Q 011947          417 TPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSV-TKR  474 (474)
Q Consensus       417 ~g~~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~l-g~~  474 (474)
                      +| .+++|+.|++|+|||+||||++||++.++++|+|++||+|+||+||++|++| |++
T Consensus       369 ~g-~~l~g~~v~s~~DhR~ama~~iagl~~~~~~I~~~~~v~ksyp~f~~~l~~l~Ga~  426 (450)
T 2o0b_A          369 TA-TPLRPGIWRAYADHRMAMAGAIIGLRVAGVEVDDIAATTKTLPEFPRLWAEMVGPG  426 (450)
T ss_dssp             EC-CCCCCEEECCTTCHHHHHHHHHHHTTSTTEEESCGGGGGGTCTTHHHHHHHHHC--
T ss_pred             EC-cCCcCCeEECCcHHHHHHHHHHHHHcCCCEEEcccChhhCchHHHHHHHHhccCCC
Confidence            97 5689999999999999999999999877899999999999999999999999 974
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1g6sa_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 3e-74
d1rf6a_427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 5e-69
d1ejda_419 d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl 2e-50
d1p88a_216 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 9e-30
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

 Score =  237 bits (606), Expect = 3e-74
 Identities = 197/418 (47%), Positives = 261/418 (62%), Gaps = 19/418 (4%)

Query: 58  SLPSLSLS--FQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 115
           S  +L L+    G TV+ NLL S+D+ HML+AL  LG++        R  + G GG    
Sbjct: 25  SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHA 84

Query: 116 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 175
                  +             L        G+   +L G PRM+ERPIG LV  L+  GA
Sbjct: 85  EGALELFLGNAGTAMRPLAAALC------LGSNDIVLTGEPRMKERPIGHLVDALRLGGA 138

Query: 176 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 235
            +  +   N PP+R+  +GG  GG V + G +SSQ+LTALLM APLA  +  I I   L+
Sbjct: 139 KITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 196

Query: 236 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
           S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF+A AA+
Sbjct: 197 SKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAI 255

Query: 296 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 355
            GGTV V G G +S+QGD++FA+VLEKMGA + W ++             R  L A+D++
Sbjct: 256 KGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD--------YISCTRGELNAIDMD 307

Query: 356 MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCV 415
           MN +PD AMT+A  ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY  
Sbjct: 308 MNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIR 367

Query: 416 ITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
           ITPPEKL  A I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L  +++
Sbjct: 368 ITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1g6sa_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1rf6a_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1ejda_419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 100.0
d1ejda_419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 100.0
d1g6sa_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1rf6a_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.95
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.49
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 94.74
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 93.66
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-71  Score=568.63  Aligned_cols=420  Identities=50%  Similarity=0.831  Sum_probs=378.3

Q ss_pred             hhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeC
Q 011947           20 AQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF   99 (474)
Q Consensus        20 ~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~   99 (474)
                      .+++...++++|.+++||++++|.|+                +|+|++|+++|+|.+.++|+..|+++|++||++|++++
T Consensus         5 ~i~p~~~l~G~i~~pgsKs~s~R~l~----------------~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~   68 (427)
T d1g6sa_           5 TLQPIARVDGTINLPGSKSVSNRALL----------------LAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSA   68 (427)
T ss_dssp             EECCCCEEEEEEECCBCHHHHHHHHH----------------HHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECT
T ss_pred             EEcCCCeeEEEEEcCCcHHHHHHHHH----------------HHHHcCCCEEEccCCccHHHHHHHHHHHHcCCEEEEeC
Confidence            34666778999999999999999999                88999999999999999999999999999999999987


Q ss_pred             CcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEe
Q 011947          100 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDC  179 (474)
Q Consensus       100 ~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~  179 (474)
                      +...+++.|.++......    ...+++|+||+++|+++++++.  ++.++.++|+++|++||+.+|++.|++||++|+.
T Consensus        69 ~~~~i~i~g~g~~~~~~~----~~~i~~g~sgt~~r~l~~l~~~--~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~  142 (427)
T d1g6sa_          69 DRTRCEIIGNGGPLHAEG----ALELFLGNAGTAMRPLAAALCL--GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITY  142 (427)
T ss_dssp             TSCCEEEECCSSCCCCCT----TEEEECTTCHHHHHHHHHHTTS--SEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEEeCCCcccccc----cceeeccccchheeeeeeeecc--cceEEeccccchhccchhhhHHHHHHhcCCEEEE
Confidence            667788888764332221    3478999999999999886554  5789999999999999999999999999999987


Q ss_pred             eCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCc
Q 011947          180 ILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS  259 (474)
Q Consensus       180 ~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~  259 (474)
                      .++.+++|+.++|+  +.+.+++++++.|||+++++||||+++.++++|+...+..|+||+++|+++|++||++++..+.
T Consensus       143 ~~~~~~~p~~i~g~--~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~  220 (427)
T d1g6sa_         143 LEQENYPPLRLQGG--FTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY  220 (427)
T ss_dssp             SSSTTSSCEEEEEC--CCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETT
T ss_pred             eecccceeEEecCC--CcceeEEECCccCcHHHHHHHHHHHhccCCcEEEeccccccCchhhhchhhhcccccccccccc
Confidence            65556789999974  7789999999999999999999999999999987655556899999999999999999988765


Q ss_pred             eeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCC
Q 011947          260 WDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGP  339 (474)
Q Consensus       260 ~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~  339 (474)
                       +.+.+.+.+.+..+.++.+++|++.|+||++++++++|+++++|+..++.|.|..+++.|++||++++..++.+++.+.
T Consensus       221 -~~~~~~~~~~~~~~~~~~v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~~~d~~~~~~l~~~G~~i~~~~~~~~~~~~  299 (427)
T d1g6sa_         221 -QQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRG  299 (427)
T ss_dssp             -TEEEECSSCCCBCCSEEECCBCHHHHHHHHHHHHHHEEEEEEESCCTTCCCGGGGHHHHHHHHTCEEEECSSEEEEECC
T ss_pred             -ccccccCcccccCCceEeccchhhhhhHHHHHHHhhcCceeecccccccccchhhhhhhhhhccccEEEeccccccccc
Confidence             3667776555444678999999999999999999999999999999999999989999999999999999998877654


Q ss_pred             CCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCC
Q 011947          340 PRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPP  419 (474)
Q Consensus       340 ~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~  419 (474)
                              .+++++++..+.||.+|.+++++++++|.++++|+.++|.|||||+..+.++|++||+++++++|+++|+|+
T Consensus       300 --------~l~~~~~d~~~~pd~~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~L~klG~~i~~~~d~l~I~G~  371 (427)
T d1g6sa_         300 --------ELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPP  371 (427)
T ss_dssp             --------CCBCCEEECTTSTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECC
T ss_pred             --------cccceeccccccCCcchhHHHHHhhhcCccceecccccceEEehHHHHHHHHHHHCCCEEEEeCCEEEEeCC
Confidence                    689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhcc
Q 011947          420 EKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVT  472 (474)
Q Consensus       420 ~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~lg  472 (474)
                      ++++++++++++|||++|+|+++|+..++++|+|++||+||||+||++|++|-
T Consensus       372 ~~l~~~~v~s~~DHRiama~~iaal~~~g~~I~~~~~i~ksyP~F~~~l~~l~  424 (427)
T d1g6sa_         372 EKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARIS  424 (427)
T ss_dssp             SSCCCCEECCTTCHHHHHHHHGGGSSSSCEEEESGGGGGGTCTTHHHHHHHHE
T ss_pred             CCCccceEeCCCCHHHHHHHHHHHHcCCCeEEeCCCcccccCHHHHHHHHHHh
Confidence            88999999999999999999999998778999999999999999999999984
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure